AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047669.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047669.01.T01 MTR_4g132500 100.000 327 0 0 7 333 644 970 0.0 677
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047669.01.T01 AT4G04350 78.086 324 71 0 7 330 647 970 0.0 546

Find 84 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTGACCATCCAAATATT+TGG 0.193750 8:+89423052 None:intergenic
TGAAAAGCTATCCAAATATT+TGG 0.222159 8:-89423063 MsG0880047669.01.T01:CDS
TGAATTGCAGGTTCAATATA+TGG 0.257449 8:-89425837 MsG0880047669.01.T01:intron
GTCCTCCCAGTTCAGATTAA+TGG 0.266564 8:-89423158 MsG0880047669.01.T01:CDS
TTTGTCTGATGGCACATTTA+AGG 0.277698 8:-89425140 MsG0880047669.01.T01:CDS
GTTCCTTAATGCAGCATATA+AGG 0.313044 8:-89424886 MsG0880047669.01.T01:intron
ATACCTTATATGCTGCATTA+AGG 0.326356 8:+89424883 None:intergenic
GTCTTGCCATTAATCTGAAC+TGG 0.349758 8:+89423152 None:intergenic
GGAGTGTAGGTCACAAAATC+TGG 0.353139 8:-89425621 MsG0880047669.01.T01:intron
TCTCAGGTTCTCTTTGACAT+TGG 0.362378 8:-89426000 MsG0880047669.01.T01:intron
ATTTGGATGGTCAATCTATC+AGG 0.375379 8:-89423046 MsG0880047669.01.T01:CDS
TCGTTTATATGAAATGTTCA+TGG 0.378252 8:-89425472 MsG0880047669.01.T01:CDS
ATGTTCATTTAACATATTAG+TGG 0.381440 8:+89425775 None:intergenic
AAAGCCTCAACCACTGATCT+TGG 0.387519 8:+89424302 None:intergenic
GATGATGTCATTTCTGAGTA+TGG 0.392026 8:-89425507 MsG0880047669.01.T01:CDS
CAACGAAGTTGTTCTATAGT+AGG 0.392214 8:+89425091 None:intergenic
AACAACATTCAAAATCTTGC+CGG 0.394836 8:+89423007 None:intergenic
AGGAAGAGAATTTATGTTCC+CGG 0.399476 8:-89423026 MsG0880047669.01.T01:CDS
CACTGGAATTTCTGCAATGA+TGG 0.404997 8:-89424910 MsG0880047669.01.T01:CDS
AGAAAGAATTTCTGAGGAAA+AGG 0.409623 8:-89425747 MsG0880047669.01.T01:intron
CAAGACAAGAGGTACCATTC+AGG 0.424680 8:-89423135 MsG0880047669.01.T01:CDS
TACTCAGAAATGACATCATC+AGG 0.432097 8:+89425510 None:intergenic
TAAACCAGGGGATTATCCTT+GGG 0.448397 8:-89425942 MsG0880047669.01.T01:CDS
AGGTTCAATATATGGCTTGT+AGG 0.455087 8:-89425829 MsG0880047669.01.T01:CDS
CAAATTCATACCTTAGGAAA+AGG 0.456859 8:+89424194 None:intergenic
GACACATTGGAAGGGCTCCT+TGG 0.468091 8:+89425966 None:intergenic
TGGAATACTAGCGGCATTGA+AGG 0.474368 8:-89425211 MsG0880047669.01.T01:CDS
TTTAATGGAAATTCTTCGAT+TGG 0.475932 8:-89426358 None:intergenic
GCATGTTTCTTCAACCTGAA+TGG 0.476124 8:+89423121 None:intergenic
ATAAACCAGGGGATTATCCT+TGG 0.483743 8:-89425943 MsG0880047669.01.T01:CDS
GTCGTATCCTTCAGATAAGC+AGG 0.490254 8:+89423185 None:intergenic
AGAACTTGGAGGTTGATTGT+TGG 0.493059 8:-89425169 MsG0880047669.01.T01:CDS
GTTGGCTTACCTTTGTCTGA+TGG 0.495326 8:-89425151 MsG0880047669.01.T01:CDS
CGTTTATATGAAATGTTCAT+GGG 0.496727 8:-89425471 MsG0880047669.01.T01:CDS
CGGGCAAGTATACGTATGTC+AGG 0.496939 8:+89425573 None:intergenic
CCCATAAAATGAGTAAAAGC+AGG 0.499228 8:-89425548 MsG0880047669.01.T01:CDS
CTGGTTTATGACACATTGGA+AGG 0.506702 8:+89425957 None:intergenic
TCAGCCATGTGTGGCGCATA+TGG 0.506977 8:+89424263 None:intergenic
TATACCGTGTACATTTCTAC+TGG 0.522029 8:-89422942 MsG0880047669.01.T01:three_prime_UTR
GGTTCAATATATGGCTTGTA+GGG 0.523673 8:-89425828 MsG0880047669.01.T01:CDS
CTTCCAATGTGTCATAAACC+AGG 0.531145 8:-89425956 MsG0880047669.01.T01:CDS
CACACATGGCTGAGGAGCTA+TGG 0.538021 8:-89424253 MsG0880047669.01.T01:CDS
ACATTGGAAGGGCTCCTTGG+TGG 0.546192 8:+89425969 None:intergenic
CAGGTAACAGAGGAAATTGA+AGG 0.548038 8:-89424945 MsG0880047669.01.T01:CDS
ACAACATTCAAAATCTTGCC+GGG 0.549727 8:+89423008 None:intergenic
CAAGGTCAAACCTACCTCAA+TGG 0.554861 8:+89425447 None:intergenic
GAGGAGCTATGGTCTCGTCT+TGG 0.556746 8:-89424242 MsG0880047669.01.T01:CDS
CCTCCCCAAGGATAATCCCC+TGG 0.560132 8:+89425938 None:intergenic
ACATCCAAGATCAGTGGTTG+AGG 0.564673 8:-89424306 MsG0880047669.01.T01:CDS
ATGGCTTGTAGGGATGAAGA+TGG 0.571425 8:-89425818 MsG0880047669.01.T01:CDS
AAGCTATCCAAATATTTGGA+TGG 0.575661 8:-89423059 MsG0880047669.01.T01:CDS
GGCAAATCCTGCTTATCTGA+AGG 0.587593 8:-89423192 MsG0880047669.01.T01:CDS
TCCCCTGGTTTATGACACAT+TGG 0.591251 8:+89425953 None:intergenic
TCTTGCCATTAATCTGAACT+GGG 0.598472 8:+89423153 None:intergenic
TATAGTAGGTTCCTCATCAA+CGG 0.601768 8:+89425105 None:intergenic
TCTTCATAAATGCATCGCTA+AGG 0.602895 8:-89425068 MsG0880047669.01.T01:intron
ATCACCATATGCGCCACACA+TGG 0.603643 8:-89424267 MsG0880047669.01.T01:CDS
CAGATTAATGGCAAGACAAG+AGG 0.609112 8:-89423146 MsG0880047669.01.T01:CDS
TTTCAGTATTCAGGTAACAG+AGG 0.620541 8:-89424955 MsG0880047669.01.T01:intron
TAGAACTGTATCCGTTGATG+AGG 0.620647 8:-89425116 MsG0880047669.01.T01:CDS
TGGTTTATGACACATTGGAA+GGG 0.623525 8:+89425958 None:intergenic
TAATCTAGAAAGAATTTCTG+AGG 0.627440 8:-89425753 MsG0880047669.01.T01:CDS
TAATGCAAAAGCATCCTCCT+CGG 0.628072 8:+89423097 None:intergenic
AAATGTTCATGGGACCATTG+AGG 0.629242 8:-89425461 MsG0880047669.01.T01:intron
TTCCAATGTGTCATAAACCA+GGG 0.630548 8:-89425955 MsG0880047669.01.T01:CDS
CCATAAAATGAGTAAAAGCA+GGG 0.631882 8:-89425547 MsG0880047669.01.T01:CDS
TTAAATGTGCCATCAGACAA+AGG 0.639481 8:+89425142 None:intergenic
ATATGCGCCACACATGGCTG+AGG 0.641382 8:-89424261 MsG0880047669.01.T01:CDS
TTCCTAGAGACTCAAAGACA+TGG 0.642919 8:-89425231 MsG0880047669.01.T01:intron
GAAATGAAATTACCTCCCCA+AGG 0.647510 8:+89425926 None:intergenic
CATAGCTCCTCAGCCATGTG+TGG 0.647558 8:+89424254 None:intergenic
AAACCAGGGGATTATCCTTG+GGG 0.656449 8:-89425941 MsG0880047669.01.T01:CDS
GGACAAACATCCAAGATCAG+TGG 0.665935 8:-89424312 MsG0880047669.01.T01:CDS
TACCTTAGGAAAAGGCTCGT+AGG 0.668738 8:+89424202 None:intergenic
TCCAATGTGTCATAAACCAG+GGG 0.669853 8:-89425954 MsG0880047669.01.T01:CDS
GAAGGCACACGATTCAACAC+TGG 0.669921 8:-89424927 MsG0880047669.01.T01:CDS
CCAGGGGATTATCCTTGGGG+AGG 0.682877 8:-89425938 MsG0880047669.01.T01:intron
TGAAGAAACATGCACCGAGG+AGG 0.685995 8:-89423111 MsG0880047669.01.T01:CDS
CATAAAATGAGTAAAAGCAG+GGG 0.686594 8:-89425546 MsG0880047669.01.T01:CDS
CATTGGTGTTGTATCCACCA+AGG 0.689119 8:-89425983 MsG0880047669.01.T01:CDS
TCAAAGACATGGAATACTAG+CGG 0.696079 8:-89425220 MsG0880047669.01.T01:CDS
TGCCATTAATCTGAACTGGG+AGG 0.720415 8:+89423156 None:intergenic
GCTTCCAGTAGAAATGTACA+CGG 0.729643 8:+89422938 None:intergenic
GGTTGAAGAAACATGCACCG+AGG 0.790617 8:-89423114 MsG0880047669.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTATGTAGTTATA+AGG + Chr8:89424657-89424676 None:intergenic 10.0%
!! CATAAAGAAATAAATTAAAA+AGG + Chr8:89423931-89423950 None:intergenic 10.0%
!! TAAAGAAATAAATTAAAAAG+GGG + Chr8:89423929-89423948 None:intergenic 10.0%
!!! AATATTTTGAAATCTTTAAA+GGG - Chr8:89425967-89425986 MsG0880047669.01.T01:CDS 10.0%
!!! CTTTTTAATTTATTTCTTTA+TGG - Chr8:89423929-89423948 MsG0880047669.01.T01:intron 10.0%
!!! TTCTTATAATTTTATGATAA+AGG - Chr8:89425728-89425747 MsG0880047669.01.T01:intron 10.0%
!! TGTGTAACATAATAAAATAT+TGG + Chr8:89425421-89425440 None:intergenic 15.0%
!!! AAAAATAGAAAATTTGCTTT+TGG + Chr8:89424562-89424581 None:intergenic 15.0%
!!! AGTGTATTAAGTTTTTATAT+TGG + Chr8:89423068-89423087 None:intergenic 15.0%
!!! ATAAATTCACAATTTTCTAA+TGG - Chr8:89423418-89423437 MsG0880047669.01.T01:intron 15.0%
!!! ATATTTTGAAATCTTTAAAG+GGG - Chr8:89425968-89425987 MsG0880047669.01.T01:CDS 15.0%
!!! CAATATTTTGAAATCTTTAA+AGG - Chr8:89425966-89425985 MsG0880047669.01.T01:CDS 15.0%
!!! GTGTATTAAGTTTTTATATT+GGG + Chr8:89423067-89423086 None:intergenic 15.0%
!!! TGTATTAAGTTTTTATATTG+GGG + Chr8:89423066-89423085 None:intergenic 15.0%
!!! TTTAATTTATTTCTTTATGG+TGG - Chr8:89423932-89423951 MsG0880047669.01.T01:intron 15.0%
!!! TTTTTTATCTTATTCATGTT+TGG - Chr8:89424736-89424755 MsG0880047669.01.T01:intron 15.0%
!! ACATTTAAATACTTATACTG+TGG - Chr8:89425903-89425922 MsG0880047669.01.T01:intron 20.0%
!! ATCTCTAAATCTTTCTTAAT+AGG + Chr8:89425203-89425222 None:intergenic 20.0%
!! ATGTTCATTTAACATATTAG+TGG + Chr8:89423508-89423527 None:intergenic 20.0%
!! TCTCTAAATCTTTCTTAATA+GGG + Chr8:89425202-89425221 None:intergenic 20.0%
!! TGATTTATGATAGAACATTA+TGG - Chr8:89425300-89425319 MsG0880047669.01.T01:intron 20.0%
!!! AAATATTGGTTAGACATTAT+TGG + Chr8:89425407-89425426 None:intergenic 20.0%
!!! ATATGTAAAAGCTATACTTT+TGG + Chr8:89425494-89425513 None:intergenic 20.0%
!!! CTTTTACATATTTATCACAA+AGG - Chr8:89425503-89425522 MsG0880047669.01.T01:CDS 20.0%
!!! GTTATTATTTAACTTCTAGA+AGG + Chr8:89423112-89423131 None:intergenic 20.0%
!!! TATGATCTCTATATTTTTCT+TGG - Chr8:89424930-89424949 MsG0880047669.01.T01:CDS 20.0%
!!! TATTTTGAAATCTTTAAAGG+GGG - Chr8:89425969-89425988 MsG0880047669.01.T01:CDS 20.0%
!!! TCATAATGTTGTTTTGATTA+AGG + Chr8:89423896-89423915 None:intergenic 20.0%
!!! TCATTTTCATAGTATCATTT+GGG + Chr8:89425805-89425824 None:intergenic 20.0%
!!! TTCATTTTCATAGTATCATT+TGG + Chr8:89425806-89425825 None:intergenic 20.0%
! AAAAAAACACCAACACAAAT+AGG + Chr8:89425759-89425778 None:intergenic 25.0%
! AAAGGTTCAAAATCTTAACT+CGG + Chr8:89423602-89423621 None:intergenic 25.0%
! AAATGTTTGTAAAAGACTTC+TGG + Chr8:89425889-89425908 None:intergenic 25.0%
! AACTCATTTAAATCCCTAAT+TGG + Chr8:89423185-89423204 None:intergenic 25.0%
! AATATATGCCACAAGTAATA+GGG + Chr8:89423861-89423880 None:intergenic 25.0%
! AATCAAAGAGAAAATTGATG+TGG + Chr8:89424012-89424031 None:intergenic 25.0%
! ACTTAACAAATCATACCATT+AGG + Chr8:89425633-89425652 None:intergenic 25.0%
! AGAATTTACTTTCAGTATTC+AGG - Chr8:89424316-89424335 MsG0880047669.01.T01:CDS 25.0%
! ATCAAAGAGAAAATTGATGT+GGG + Chr8:89424011-89424030 None:intergenic 25.0%
! ATTGAAATTTAAACACAACC+TGG + Chr8:89426003-89426022 None:intergenic 25.0%
! ATTGATAAATCCACCAATTA+GGG - Chr8:89423169-89423188 MsG0880047669.01.T01:CDS 25.0%
! CATCATATGTATATCCTATA+TGG - Chr8:89424794-89424813 MsG0880047669.01.T01:intron 25.0%
! CGTTTATATGAAATGTTCAT+GGG - Chr8:89423809-89423828 MsG0880047669.01.T01:intron 25.0%
! GGATTTAAATGAGTTCAATA+AGG - Chr8:89423190-89423209 MsG0880047669.01.T01:CDS 25.0%
! TAATCTAGAAAGAATTTCTG+AGG - Chr8:89423527-89423546 MsG0880047669.01.T01:intron 25.0%
! TCGTTTATATGAAATGTTCA+TGG - Chr8:89423808-89423827 MsG0880047669.01.T01:intron 25.0%
! TCTTGTCAAGGAAAAAAAAA+AGG + Chr8:89423620-89423639 None:intergenic 25.0%
! TGAAAAGCTATCCAAATATT+TGG - Chr8:89426217-89426236 MsG0880047669.01.T01:intron 25.0%
! TGATGTACATTATACCATAT+AGG + Chr8:89424811-89424830 None:intergenic 25.0%
! TTAAATAATAACTGCCAACT+TGG - Chr8:89423120-89423139 MsG0880047669.01.T01:CDS 25.0%
! TTGGTACTAAAGAAAATAGT+TGG - Chr8:89422941-89422960 MsG0880047669.01.T01:three_prime_UTR 25.0%
! TTTATGAAGTGTATTGTGTT+TGG - Chr8:89424835-89424854 MsG0880047669.01.T01:intron 25.0%
!! TATGTAATATCTGTCTGTTT+TGG + Chr8:89424516-89424535 None:intergenic 25.0%
!! TTATCACCTATGCAATTTTT+CGG + Chr8:89424621-89424640 None:intergenic 25.0%
!! TTATTTCTTTATGGTGGTAT+GGG - Chr8:89423938-89423957 MsG0880047669.01.T01:intron 25.0%
!! TTTATTTCTTTATGGTGGTA+TGG - Chr8:89423937-89423956 MsG0880047669.01.T01:intron 25.0%
!! TTTTCCTAAGGTATGAATTT+GGG - Chr8:89425088-89425107 MsG0880047669.01.T01:CDS 25.0%
!!! ATTGATTTGTCTATGGAATA+GGG - Chr8:89424472-89424491 MsG0880047669.01.T01:intron 25.0%
!!! GAACAATATTGATTTGTCTA+TGG - Chr8:89424465-89424484 MsG0880047669.01.T01:intron 25.0%
!!! TATTGATTTGTCTATGGAAT+AGG - Chr8:89424471-89424490 MsG0880047669.01.T01:intron 25.0%
!!! TTGTGTTGGTGTTTTTTTTT+TGG - Chr8:89425761-89425780 MsG0880047669.01.T01:CDS 25.0%
!!! TTTAGCTTTAATTGCAGTTT+CGG - Chr8:89424680-89424699 MsG0880047669.01.T01:intron 25.0%
!!! TTTTCTTGTGTCTTTGTTTA+TGG - Chr8:89424261-89424280 MsG0880047669.01.T01:CDS 25.0%
AAACCATTCCTATTCATTCA+TGG - Chr8:89425119-89425138 MsG0880047669.01.T01:CDS 30.0%
AACAACATTCAAAATCTTGC+CGG + Chr8:89426276-89426295 None:intergenic 30.0%
AAGCTATCCAAATATTTGGA+TGG - Chr8:89426221-89426240 MsG0880047669.01.T01:intron 30.0%
AGATTGACCATCCAAATATT+TGG + Chr8:89426231-89426250 None:intergenic 30.0%
ATACCTTATATGCTGCATTA+AGG + Chr8:89424400-89424419 None:intergenic 30.0%
ATGGATTTAACAAGCTGATT+TGG - Chr8:89424280-89424299 MsG0880047669.01.T01:CDS 30.0%
ATTACTTGTGGCATATATTG+TGG - Chr8:89423862-89423881 MsG0880047669.01.T01:intron 30.0%
CAAATTCATACCTTAGGAAA+AGG + Chr8:89425089-89425108 None:intergenic 30.0%
CAATATATGCCACAAGTAAT+AGG + Chr8:89423862-89423881 None:intergenic 30.0%
CATAAAATGAGTAAAAGCAG+GGG - Chr8:89423734-89423753 MsG0880047669.01.T01:intron 30.0%
CCATAAAATGAGTAAAAGCA+GGG - Chr8:89423733-89423752 MsG0880047669.01.T01:intron 30.0%
CCTTATCTTTAATCTAAGTG+GGG + Chr8:89422978-89422997 None:intergenic 30.0%
CTAAATCCGAAAAATTGCAT+AGG - Chr8:89424612-89424631 MsG0880047669.01.T01:intron 30.0%
CTATTACCAATTGTTAGTGT+TGG - Chr8:89423223-89423242 MsG0880047669.01.T01:intron 30.0%
GATTAATGAGTTAGATCGAA+TGG - Chr8:89425220-89425239 MsG0880047669.01.T01:CDS 30.0%
GATTGATAAATCCACCAATT+AGG - Chr8:89423168-89423187 MsG0880047669.01.T01:CDS 30.0%
GCCTTATCTTTAATCTAAGT+GGG + Chr8:89422979-89422998 None:intergenic 30.0%
GGTAATATAAGTTCTTGTCA+AGG + Chr8:89423632-89423651 None:intergenic 30.0%
TATTTCTTTATGGTGGTATG+GGG - Chr8:89423939-89423958 MsG0880047669.01.T01:intron 30.0%
TCAAAGAGAAAATTGATGTG+GGG + Chr8:89424010-89424029 None:intergenic 30.0%
TCATTTAAATCCCTAATTGG+TGG + Chr8:89423182-89423201 None:intergenic 30.0%
TCCATAAGTGAGTGAAAATA+GGG + Chr8:89424708-89424727 None:intergenic 30.0%
TGAATAGGAATGGTTTGATA+TGG + Chr8:89425115-89425134 None:intergenic 30.0%
TGAATTGCAGGTTCAATATA+TGG - Chr8:89423443-89423462 MsG0880047669.01.T01:intron 30.0%
TTCCATAAGTGAGTGAAAAT+AGG + Chr8:89424709-89424728 None:intergenic 30.0%
TTCTTCTGCTTGAAATTTGA+GGG - Chr8:89423374-89423393 MsG0880047669.01.T01:intron 30.0%
TTTCTAATGGTTTGAATTGC+AGG - Chr8:89423431-89423450 MsG0880047669.01.T01:intron 30.0%
TTTCTTCTGCTTGAAATTTG+AGG - Chr8:89423373-89423392 MsG0880047669.01.T01:intron 30.0%
! AATTACTGATTGCGTCAAAT+AGG - Chr8:89425451-89425470 MsG0880047669.01.T01:intron 30.0%
! AGAAAGAATTTCTGAGGAAA+AGG - Chr8:89423533-89423552 MsG0880047669.01.T01:intron 30.0%
! AGCCTTATCTTTAATCTAAG+TGG + Chr8:89422980-89422999 None:intergenic 30.0%
! CAACACTAACAATTGGTAAT+AGG + Chr8:89423225-89423244 None:intergenic 30.0%
! CAAGATTTTGAATGTTGTTC+TGG - Chr8:89426277-89426296 MsG0880047669.01.T01:intron 30.0%
! CTTTTCCTAAGGTATGAATT+TGG - Chr8:89425087-89425106 MsG0880047669.01.T01:CDS 30.0%
! TATTGGTTAGACATTATTGG+AGG + Chr8:89425404-89425423 None:intergenic 30.0%
! TCTCTAGGAACATGTTAAAA+AGG + Chr8:89424039-89424058 None:intergenic 30.0%
! TCTTGGCATATATTTTCAGT+GGG - Chr8:89424947-89424966 MsG0880047669.01.T01:intron 30.0%
! TGTAAAAGCTATACTTTTGG+TGG + Chr8:89425491-89425510 None:intergenic 30.0%
! TTCTTGGCATATATTTTCAG+TGG - Chr8:89424946-89424965 MsG0880047669.01.T01:intron 30.0%
! TTTTACTCATTTTATGGGCA+CGG + Chr8:89423730-89423749 None:intergenic 30.0%
! TTTTCACTCACTTATGGAAT+TGG - Chr8:89424710-89424729 MsG0880047669.01.T01:intron 30.0%
!! CACCAATCTTGATGTTTTTA+CGG + Chr8:89426304-89426323 None:intergenic 30.0%
!! CCTGCTTTTACTCATTTTAT+GGG + Chr8:89423735-89423754 None:intergenic 30.0%
!!! AGCGGTATTTTTTTTCCTAA+TGG - Chr8:89425615-89425634 MsG0880047669.01.T01:CDS 30.0%
!!! ATCGTTTTTTAGGTAGAACT+TGG - Chr8:89424097-89424116 MsG0880047669.01.T01:intron 30.0%
!!! TGCAACAATTTTTTCCTCTT+GGG - Chr8:89425669-89425688 MsG0880047669.01.T01:intron 30.0%
!!! TTGCAACAATTTTTTCCTCT+TGG - Chr8:89425668-89425687 MsG0880047669.01.T01:intron 30.0%
AAAAATACCGCTGTAAGTTG+TGG + Chr8:89425607-89425626 None:intergenic 35.0%
AAGCCATGAATGAATAGGAA+TGG + Chr8:89425125-89425144 None:intergenic 35.0%
AATAACCAACTTGTAAGGTG+AGG + Chr8:89423030-89423049 None:intergenic 35.0%
ACAACATTCAAAATCTTGCC+GGG + Chr8:89426275-89426294 None:intergenic 35.0%
ACATATAACAGACATGATCG+TGG + Chr8:89426058-89426077 None:intergenic 35.0%
ACGCAATCAGTAATTGTAGA+GGG + Chr8:89425446-89425465 None:intergenic 35.0%
AGGAAGAGAATTTATGTTCC+CGG - Chr8:89426254-89426273 MsG0880047669.01.T01:intron 35.0%
ATAACCAACTTGTAAGGTGA+GGG + Chr8:89423029-89423048 None:intergenic 35.0%
ATATTGTTCGCTTATTCCCT+TGG + Chr8:89424454-89424473 None:intergenic 35.0%
ATTGCACCAACACTAACAAT+TGG + Chr8:89423232-89423251 None:intergenic 35.0%
ATTTGGATGGTCAATCTATC+AGG - Chr8:89426234-89426253 MsG0880047669.01.T01:intron 35.0%
CAACGAAGTTGTTCTATAGT+AGG + Chr8:89424192-89424211 None:intergenic 35.0%
CCATAAGTGAGTGAAAATAG+GGG + Chr8:89424707-89424726 None:intergenic 35.0%
CCCATAAAATGAGTAAAAGC+AGG - Chr8:89423732-89423751 MsG0880047669.01.T01:intron 35.0%
CCCCACTTAGATTAAAGATA+AGG - Chr8:89422975-89422994 MsG0880047669.01.T01:CDS 35.0%
CTGTGATCTTGTTCTAATAC+AGG - Chr8:89423977-89423996 MsG0880047669.01.T01:intron 35.0%
CTGTTATATGTTGTAACTGC+AGG - Chr8:89426067-89426086 MsG0880047669.01.T01:intron 35.0%
GAACTTATATTACCTTTCCC+TGG - Chr8:89423638-89423657 MsG0880047669.01.T01:intron 35.0%
GACCGTAAAAACATCAAGAT+TGG - Chr8:89426299-89426318 MsG0880047669.01.T01:intron 35.0%
GTTCCTTAATGCAGCATATA+AGG - Chr8:89424394-89424413 MsG0880047669.01.T01:intron 35.0%
TACTCAGAAATGACATCATC+AGG + Chr8:89423773-89423792 None:intergenic 35.0%
TATACCGTGTACATTTCTAC+TGG - Chr8:89426338-89426357 MsG0880047669.01.T01:intron 35.0%
TATAGTAGGTTCCTCATCAA+CGG + Chr8:89424178-89424197 None:intergenic 35.0%
TATTAGAACAAGATCACAGC+TGG + Chr8:89423976-89423995 None:intergenic 35.0%
TCAAAGACATGGAATACTAG+CGG - Chr8:89424060-89424079 MsG0880047669.01.T01:intron 35.0%
TCATAGTATCATTTGGGCTT+AGG + Chr8:89425799-89425818 None:intergenic 35.0%
TCTTCATAAATGCATCGCTA+AGG - Chr8:89424212-89424231 MsG0880047669.01.T01:CDS 35.0%
TCTTGCCATTAATCTGAACT+GGG + Chr8:89426130-89426149 None:intergenic 35.0%
TGGTTTATGACACATTGGAA+GGG + Chr8:89423325-89423344 None:intergenic 35.0%
TTAAATGTGCCATCAGACAA+AGG + Chr8:89424141-89424160 None:intergenic 35.0%
TTCCAATGTGTCATAAACCA+GGG - Chr8:89423325-89423344 MsG0880047669.01.T01:intron 35.0%
TTGACAAGCCATGAATGAAT+AGG + Chr8:89425130-89425149 None:intergenic 35.0%
TTTCAGTATTCAGGTAACAG+AGG - Chr8:89424325-89424344 MsG0880047669.01.T01:intron 35.0%
TTTGTCTGATGGCACATTTA+AGG - Chr8:89424140-89424159 MsG0880047669.01.T01:intron 35.0%
! AGGTTCAATATATGGCTTGT+AGG - Chr8:89423451-89423470 MsG0880047669.01.T01:intron 35.0%
! ATGCTTTTGCATTAGCATCT+AGG - Chr8:89426192-89426211 MsG0880047669.01.T01:intron 35.0%
! GATGATGTCATTTCTGAGTA+TGG - Chr8:89423773-89423792 MsG0880047669.01.T01:intron 35.0%
! GGTTCAATATATGGCTTGTA+GGG - Chr8:89423452-89423471 MsG0880047669.01.T01:intron 35.0%
! GTATGTCAGGATTTTCTTTC+AGG + Chr8:89423697-89423716 None:intergenic 35.0%
! TAGATCGAATGGTGTCAATT+TGG - Chr8:89425231-89425250 MsG0880047669.01.T01:intron 35.0%
! TGCTTTTGCATTAGCATCTA+GGG - Chr8:89426193-89426212 MsG0880047669.01.T01:intron 35.0%
! TTTACTCATTTTATGGGCAC+GGG + Chr8:89423729-89423748 None:intergenic 35.0%
!! ACCTTACAAGTTGGTTATTG+GGG - Chr8:89423031-89423050 MsG0880047669.01.T01:CDS 35.0%
!! CACCTTACAAGTTGGTTATT+GGG - Chr8:89423030-89423049 MsG0880047669.01.T01:CDS 35.0%
!! CCCTGCTTTTACTCATTTTA+TGG + Chr8:89423736-89423755 None:intergenic 35.0%
!! TCACCTTACAAGTTGGTTAT+TGG - Chr8:89423029-89423048 MsG0880047669.01.T01:CDS 35.0%
!!! GTTTTTTAGGTAGAACTTGG+AGG - Chr8:89424100-89424119 MsG0880047669.01.T01:intron 35.0%
!!! TCCATTGTTTTTGCATCCAA+GGG - Chr8:89424435-89424454 MsG0880047669.01.T01:intron 35.0%
!!! TTCCATTGTTTTTGCATCCA+AGG - Chr8:89424434-89424453 MsG0880047669.01.T01:intron 35.0%
AAATGTTCATGGGACCATTG+AGG - Chr8:89423819-89423838 MsG0880047669.01.T01:intron 40.0%
AAGGCACAACCTATTTGTGT+TGG - Chr8:89425747-89425766 MsG0880047669.01.T01:intron 40.0%
ACCTTGAACCCTATTACTTG+TGG - Chr8:89423850-89423869 MsG0880047669.01.T01:intron 40.0%
AGAACCTGAGATGCAAAACT+CGG + Chr8:89423271-89423290 None:intergenic 40.0%
AGAGAGAAGCGAAGGAAAAA+AGG + Chr8:89424896-89424915 None:intergenic 40.0%
ATAAACCAGGGGATTATCCT+TGG - Chr8:89423337-89423356 MsG0880047669.01.T01:intron 40.0%
CACTGGAATTTCTGCAATGA+TGG - Chr8:89424370-89424389 MsG0880047669.01.T01:intron 40.0%
CAGATTAATGGCAAGACAAG+AGG - Chr8:89426134-89426153 MsG0880047669.01.T01:intron 40.0%
CAGGTAACAGAGGAAATTGA+AGG - Chr8:89424335-89424354 MsG0880047669.01.T01:intron 40.0%
CTGGTTTATGACACATTGGA+AGG + Chr8:89423326-89423345 None:intergenic 40.0%
CTTATACTGTGGTTGTGAAG+AGG - Chr8:89425914-89425933 MsG0880047669.01.T01:intron 40.0%
CTTCCAATGTGTCATAAACC+AGG - Chr8:89423324-89423343 MsG0880047669.01.T01:intron 40.0%
CTTTAATCTAAGTGGGGCTT+TGG + Chr8:89422972-89422991 None:intergenic 40.0%
GAAATGAAATTACCTCCCCA+AGG + Chr8:89423357-89423376 None:intergenic 40.0%
GACGCAATCAGTAATTGTAG+AGG + Chr8:89425447-89425466 None:intergenic 40.0%
GCATGTTTCTTCAACCTGAA+TGG + Chr8:89426162-89426181 None:intergenic 40.0%
GCTTCCAGTAGAAATGTACA+CGG + Chr8:89426345-89426364 None:intergenic 40.0%
GTCTTGCCATTAATCTGAAC+TGG + Chr8:89426131-89426150 None:intergenic 40.0%
GTGGCATATATTGTGGAGAT+TGG - Chr8:89423869-89423888 MsG0880047669.01.T01:intron 40.0%
TAAACCAGGGGATTATCCTT+GGG - Chr8:89423338-89423357 MsG0880047669.01.T01:intron 40.0%
TAGAACTGTATCCGTTGATG+AGG - Chr8:89424164-89424183 MsG0880047669.01.T01:intron 40.0%
TCCAATGTGTCATAAACCAG+GGG - Chr8:89423326-89423345 MsG0880047669.01.T01:intron 40.0%
TCCCCAATAACCAACTTGTA+AGG + Chr8:89423035-89423054 None:intergenic 40.0%
TCCCTTGGATGCAAAAACAA+TGG + Chr8:89424439-89424458 None:intergenic 40.0%
TCTCAGGTTCTCTTTGACAT+TGG - Chr8:89423280-89423299 MsG0880047669.01.T01:intron 40.0%
TGGACCCAAATTCATACCTT+AGG + Chr8:89425095-89425114 None:intergenic 40.0%
TTCCATGTCTTTGAGTCTCT+AGG + Chr8:89424054-89424073 None:intergenic 40.0%
TTCCTAGAGACTCAAAGACA+TGG - Chr8:89424049-89424068 MsG0880047669.01.T01:intron 40.0%
TTGCGTCAAATAGGTATCTC+TGG - Chr8:89425460-89425479 MsG0880047669.01.T01:intron 40.0%
! AGAACTTGGAGGTTGATTGT+TGG - Chr8:89424111-89424130 MsG0880047669.01.T01:intron 40.0%
! ATTTTGTGACCTACACTCCA+GGG + Chr8:89423658-89423677 None:intergenic 40.0%
! CCCCTATTTTCACTCACTTA+TGG - Chr8:89424704-89424723 MsG0880047669.01.T01:intron 40.0%
! CGAATGGTGTCAATTTGGAT+GGG - Chr8:89425236-89425255 MsG0880047669.01.T01:intron 40.0%
! CGTAGGCTAATGATTTTGTG+TGG + Chr8:89425064-89425083 None:intergenic 40.0%
! TCGAATGGTGTCAATTTGGA+TGG - Chr8:89425235-89425254 MsG0880047669.01.T01:intron 40.0%
! TTAAAGGGGGATGTTTTTCC+AGG - Chr8:89425982-89426001 MsG0880047669.01.T01:CDS 40.0%
! TTAACCGAGTTTTGCATCTC+AGG - Chr8:89423264-89423283 MsG0880047669.01.T01:intron 40.0%
! TTACTCAAGTTGTTCCCAAG+AGG + Chr8:89425686-89425705 None:intergenic 40.0%
!! TAATGCAAAAGCATCCTCCT+CGG + Chr8:89426186-89426205 None:intergenic 40.0%
!!! GAAGGCGTACATCGTTTTTT+AGG - Chr8:89424087-89424106 MsG0880047669.01.T01:intron 40.0%
AAACCAGGGGATTATCCTTG+GGG - Chr8:89423339-89423358 MsG0880047669.01.T01:intron 45.0%
AAAGCCTCAACCACTGATCT+TGG + Chr8:89424981-89425000 None:intergenic 45.0%
ACATCCAAGATCAGTGGTTG+AGG - Chr8:89424974-89424993 MsG0880047669.01.T01:intron 45.0%
ACATCCCTCACCTTACAAGT+TGG - Chr8:89423022-89423041 MsG0880047669.01.T01:CDS 45.0%
ATTACCTTTCCCTGGAGTGT+AGG - Chr8:89423646-89423665 MsG0880047669.01.T01:intron 45.0%
CAAGGTCAAACCTACCTCAA+TGG + Chr8:89423836-89423855 None:intergenic 45.0%
GCCACAAGTAATAGGGTTCA+AGG + Chr8:89423854-89423873 None:intergenic 45.0%
GGACAAACATCCAAGATCAG+TGG - Chr8:89424968-89424987 MsG0880047669.01.T01:intron 45.0%
GGAGTGTAGGTCACAAAATC+TGG - Chr8:89423659-89423678 MsG0880047669.01.T01:intron 45.0%
GGCAAATCCTGCTTATCTGA+AGG - Chr8:89426088-89426107 MsG0880047669.01.T01:intron 45.0%
GGTTGTGAAGAGGATCAATC+TGG - Chr8:89425924-89425943 MsG0880047669.01.T01:intron 45.0%
GTCCTCCCAGTTCAGATTAA+TGG - Chr8:89426122-89426141 MsG0880047669.01.T01:intron 45.0%
GTCGTATCCTTCAGATAAGC+AGG + Chr8:89426098-89426117 None:intergenic 45.0%
TACACAGCCACAACTTACAG+CGG - Chr8:89425597-89425616 MsG0880047669.01.T01:CDS 45.0%
TACCTTAGGAAAAGGCTCGT+AGG + Chr8:89425081-89425100 None:intergenic 45.0%
TCCCCTGGTTTATGACACAT+TGG + Chr8:89423330-89423349 None:intergenic 45.0%
TCTTTATGGTGGTATGGGGA+GGG - Chr8:89423943-89423962 MsG0880047669.01.T01:intron 45.0%
TGCCATTAATCTGAACTGGG+AGG + Chr8:89426127-89426146 None:intergenic 45.0%
TTCTTTATGGTGGTATGGGG+AGG - Chr8:89423942-89423961 MsG0880047669.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr8:89425349-89425368 None:intergenic 45.0%
! ATGGCTTGTAGGGATGAAGA+TGG - Chr8:89423462-89423481 MsG0880047669.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr8:89425350-89425369 None:intergenic 45.0%
! GATTTTGTGACCTACACTCC+AGG + Chr8:89423659-89423678 None:intergenic 45.0%
! GTTGGCTTACCTTTGTCTGA+TGG - Chr8:89424129-89424148 MsG0880047669.01.T01:intron 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + Chr8:89425351-89425370 None:intergenic 45.0%
! TGGAATACTAGCGGCATTGA+AGG - Chr8:89424069-89424088 MsG0880047669.01.T01:intron 45.0%
!! CAAGACAAGAGGTACCATTC+AGG - Chr8:89426145-89426164 MsG0880047669.01.T01:intron 45.0%
!! CATTGGTGTTGTATCCACCA+AGG - Chr8:89423297-89423316 MsG0880047669.01.T01:intron 45.0%
!! ATAAAGAAATAAATTAAAAA+GGG + Chr8:89423930-89423949 None:intergenic 5.0%
ACTAAGTGGGGTCAGCAACA+TGG + Chr8:89425337-89425356 None:intergenic 50.0%
ATCACCATATGCGCCACACA+TGG - Chr8:89425013-89425032 MsG0880047669.01.T01:intron 50.0%
ATGTTGCTGACCCCACTTAG+TGG - Chr8:89425336-89425355 MsG0880047669.01.T01:intron 50.0%
CGGGCAAGTATACGTATGTC+AGG + Chr8:89423710-89423729 None:intergenic 50.0%
CTCGTAACAGAGAGAAGCGA+AGG + Chr8:89424904-89424923 None:intergenic 50.0%
CTTTATGGTGGTATGGGGAG+GGG - Chr8:89423944-89423963 MsG0880047669.01.T01:intron 50.0%
GGTTGAAGAAACATGCACCG+AGG - Chr8:89426166-89426185 MsG0880047669.01.T01:intron 50.0%
GTTCATGGGACCATTGAGGT+AGG - Chr8:89423823-89423842 MsG0880047669.01.T01:intron 50.0%
TGAAGAAACATGCACCGAGG+AGG - Chr8:89426169-89426188 MsG0880047669.01.T01:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - Chr8:89425343-89425362 MsG0880047669.01.T01:intron 50.0%
TGCCAACTTGGTTGAGTCGT+CGG - Chr8:89423132-89423151 MsG0880047669.01.T01:CDS 50.0%
TGTTGCTGACCCCACTTAGT+GGG - Chr8:89425337-89425356 MsG0880047669.01.T01:intron 50.0%
! AGCCTACGAGCCTTTTCCTA+AGG - Chr8:89425076-89425095 MsG0880047669.01.T01:CDS 50.0%
! GAAGGCACACGATTCAACAC+TGG - Chr8:89424353-89424372 MsG0880047669.01.T01:intron 50.0%
ACATTGGAAGGGCTCCTTGG+TGG + Chr8:89423314-89423333 None:intergenic 55.0%
AGCCGACGACTCAACCAAGT+TGG + Chr8:89423137-89423156 None:intergenic 55.0%
ATATGCGCCACACATGGCTG+AGG - Chr8:89425019-89425038 MsG0880047669.01.T01:intron 55.0%
CACACATGGCTGAGGAGCTA+TGG - Chr8:89425027-89425046 MsG0880047669.01.T01:intron 55.0%
CATAGCTCCTCAGCCATGTG+TGG + Chr8:89425029-89425048 None:intergenic 55.0%
GACACATTGGAAGGGCTCCT+TGG + Chr8:89423317-89423336 None:intergenic 55.0%
GAGGAGCTATGGTCTCGTCT+TGG - Chr8:89425038-89425057 MsG0880047669.01.T01:intron 55.0%
GTGACCTACACTCCAGGGAA+AGG + Chr8:89423653-89423672 None:intergenic 55.0%
TCAGCCATGTGTGGCGCATA+TGG + Chr8:89425020-89425039 None:intergenic 55.0%
CCAGGGGATTATCCTTGGGG+AGG - Chr8:89423342-89423361 MsG0880047669.01.T01:intron 60.0%
CCTCCCCAAGGATAATCCCC+TGG + Chr8:89423345-89423364 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 89422926 89426376 89422926 ID=MsG0880047669.01;Name=MsG0880047669.01
Chr8 mRNA 89422926 89426376 89422926 ID=MsG0880047669.01.T01;Parent=MsG0880047669.01;Name=MsG0880047669.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.85|0.87|1|1|1|8|45|333
Chr8 exon 89422926 89423213 89422926 ID=MsG0880047669.01.T01:exon:2442;Parent=MsG0880047669.01.T01
Chr8 exon 89424205 89424336 89424205 ID=MsG0880047669.01.T01:exon:2441;Parent=MsG0880047669.01.T01
Chr8 exon 89424887 89424964 89424887 ID=MsG0880047669.01.T01:exon:2440;Parent=MsG0880047669.01.T01
Chr8 exon 89425069 89425246 89425069 ID=MsG0880047669.01.T01:exon:2439;Parent=MsG0880047669.01.T01
Chr8 exon 89425462 89425634 89425462 ID=MsG0880047669.01.T01:exon:2438;Parent=MsG0880047669.01.T01
Chr8 exon 89425748 89425849 89425748 ID=MsG0880047669.01.T01:exon:2437;Parent=MsG0880047669.01.T01
Chr8 exon 89425939 89426016 89425939 ID=MsG0880047669.01.T01:exon:2436;Parent=MsG0880047669.01.T01
Chr8 exon 89426359 89426376 89426359 ID=MsG0880047669.01.T01:exon:2435;Parent=MsG0880047669.01.T01
Chr8 CDS 89426359 89426376 89426359 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89425939 89426016 89425939 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89425748 89425849 89425748 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89425462 89425634 89425462 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89425069 89425246 89425069 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89424887 89424964 89424887 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89424205 89424336 89424205 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 CDS 89422971 89423213 89422971 ID=MsG0880047669.01.T01:cds;Parent=MsG0880047669.01.T01
Chr8 three_prime_UTR 89422926 89422970 89422926 ID=MsG0880047669.01.T01:three_prime_utr;Parent=MsG0880047669.01.T01
Gene Sequence

>MsG0880047669.01.T01

ATGGAAATTCTTCGATTGGTTCTCTTTGACATTGGTGTTGTATCCACCAAGGAGCCCTTCCAATGTGTCATAAACCAGGGGATTATCCTTGGGGAGGTTCAATATATGGCTTGTAGGGATGAAGATGGAAATCTGATATCTGCTGATTCCACTAATATGTTAAATGAACATAATCTAGAAAGAATTTCTGAGGAAAAGGTCACAAAATCTGGAGATTCGTTTGTCCTGAAAGAAAATCCTGACATACGTATACTTGCCCGTGCCCATAAAATGAGTAAAAGCAGGGGAAATGTTGTTAATCCTGATGATGTCATTTCTGAGTATGGAGCAGATTCTCTTCGTTTATATGAAATGTTCATGGGACCATTGAGAGACTCAAAGACATGGAATACTAGCGGCATTGAAGGCGTACATCGTTTTTTAGGTAGAACTTGGAGGTTGATTGTTGGCTTACCTTTGTCTGATGGCACATTTAAGGATAGAACTGTATCCGTTGATGAGGAACCTACTATAGAACAACTTCGTTGTCTTCATAAATGCATCGCTAAGGTAACAGAGGAAATTGAAGGCACACGATTCAACACTGGAATTTCTGCAATGATGGAGTTCCTTAATGCAGCATATAAGTGGGACAAACATCCAAGATCAGTGGTTGAGGCTTTTGTTTTGCTGTTATCACCATATGCGCCACACATGGCTGAGGAGCTATGGTCTCGTCTTGGCCACACAAAATCATTAGCCTACGAGCCTTTTCCTAAGGCAAATCCTGCTTATCTGAAGGATACGACAGTAGTCCTCCCAGTTCAGATTAATGGCAAGACAAGAGGTACCATTCAGGTTGAAGAAACATGCACCGAGGAGGATGCTTTTGCATTAGCATCTAGGGATGAAAAGCTATCCAAATATTTGGATGGTCAATCTATCAGGAAGAGAATTTATGTTCCCGGCAAGATTTTGAATGTTGTTCTGGACCGTAAAAACATCAAGATTGGTGTACAGTAG

Protein sequence

>MsG0880047669.01.T01

MEILRLVLFDIGVVSTKEPFQCVINQGIILGEVQYMACRDEDGNLISADSTNMLNEHNLERISEEKVTKSGDSFVLKENPDIRILARAHKMSKSRGNVVNPDDVISEYGADSLRLYEMFMGPLRDSKTWNTSGIEGVHRFLGRTWRLIVGLPLSDGTFKDRTVSVDEEPTIEQLRCLHKCIAKVTEEIEGTRFNTGISAMMEFLNAAYKWDKHPRSVVEAFVLLLSPYAPHMAEELWSRLGHTKSLAYEPFPKANPAYLKDTTVVLPVQINGKTRGTIQVEETCTEEDAFALASRDEKLSKYLDGQSIRKRIYVPGKILNVVLDRKNIKIGVQ*