AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042779.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042779.01.T01 MTR_8g022050 93.814 194 10 1 3 196 236 427 2.33e-130 373
MsG0880042779.01.T01 MTR_4g124940 63.388 183 52 4 18 196 233 404 1.17e-69 217
MsG0880042779.01.T01 MTR_3g109090 54.502 211 76 8 2 196 218 424 1.72e-63 202
MsG0880042779.01.T01 MTR_3g109090 54.502 211 76 8 2 196 234 440 2.13e-63 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042779.01.T01 AT3G14100 71.500 200 50 3 1 196 231 427 3.27e-87 263
MsG0880042779.01.T01 AT1G17370 73.626 182 42 2 18 196 241 419 3.90e-85 258
MsG0880042779.01.T01 AT1G17370 73.889 180 41 2 20 196 240 416 4.99e-84 254
MsG0880042779.01.T01 AT1G54080 67.000 200 50 4 3 196 237 426 9.64e-78 239
MsG0880042779.01.T01 AT1G54080 67.000 200 50 4 3 196 241 430 1.16e-77 239

Find 72 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCACCATTTAATTTAAA+AGG 0.167469 8:-13945865 None:intergenic
TACAAATGTTTAATCTAATT+TGG 0.181298 8:-13945902 None:intergenic
CCTATCCGCAACAGATATTT+TGG 0.201236 8:+13945567 MsG0880042779.01.T01:CDS
CATCGTCATTTCCATGCTCT+TGG 0.280996 8:+13945099 MsG0880042779.01.T01:CDS
TCTCTGTGGCAAAATAATTA+AGG 0.291025 8:+13945236 MsG0880042779.01.T01:CDS
CCAATTGCAGCTTGCTTAAG+AGG 0.300686 8:-13945664 None:intergenic
GTCCAGCGTGATAAAGGATT+TGG 0.304987 8:+13945147 MsG0880042779.01.T01:CDS
ATCGTCATTTCCATGCTCTT+GGG 0.313391 8:+13945100 MsG0880042779.01.T01:CDS
AGCTGCAATTGGAGCTAGCC+AGG 0.366978 8:+13945675 MsG0880042779.01.T01:CDS
CCTCTTAAGCAAGCTGCAAT+TGG 0.368129 8:+13945664 MsG0880042779.01.T01:CDS
GTTCGTGTCCAGCGTGATAA+AGG 0.374267 8:+13945141 MsG0880042779.01.T01:CDS
AGAGGATTTGAAGCAGTTCC+AGG 0.379667 8:-13945514 None:intergenic
TACTCATGCTGAGGCAGCTC+TGG 0.384996 8:+13945185 MsG0880042779.01.T01:CDS
CCTGCTGCTGCGCCTCTACC+AGG 0.385593 8:+13945544 MsG0880042779.01.T01:CDS
CATTTCCATGCTCTTGGGGC+TGG 0.386711 8:+13945105 MsG0880042779.01.T01:CDS
GCTGTGCAGCAGCAACATTT+TGG 0.387873 8:-13945717 None:intergenic
CCTGGTAGAGGCGCAGCAGC+AGG 0.402401 8:-13945544 None:intergenic
TGTTCAAATATAGTGCTCTT+GGG 0.408510 8:+13945474 MsG0880042779.01.T01:intron
ATAACAACAATAAGATATAT+AGG 0.409012 8:-13946067 None:intergenic
GTGTTCAAATATAGTGCTCT+TGG 0.414047 8:+13945473 MsG0880042779.01.T01:intron
AGAGGCGCAGCAGCAGGTGG+GGG 0.429003 8:-13945538 None:intergenic
TCCAGCGTGATAAAGGATTT+GGG 0.430462 8:+13945148 MsG0880042779.01.T01:CDS
TAGTAACAATAAAACCCAAA+TGG 0.431858 8:-13946010 None:intergenic
GGTAGAGGCGCAGCAGCAGG+TGG 0.433312 8:-13945541 None:intergenic
TCAATACACAACTGTTTATG+TGG 0.446274 8:+13944679 MsG0880042779.01.T01:CDS
GTGTATTGAGGATTGTTCTC+AGG 0.448950 8:-13944665 None:intergenic
ACTGTTTATGTGGGTAACCT+TGG 0.450682 8:+13944689 MsG0880042779.01.T01:CDS
GGGAGCAAGCCCACTCCACC+TGG 0.463873 8:+13945496 MsG0880042779.01.T01:CDS
TTATTATTCTGCGCATTGGT+TGG 0.467531 8:+13945804 MsG0880042779.01.T01:three_prime_UTR
CTGTTTATGTGGGTAACCTT+GGG 0.467747 8:+13944690 MsG0880042779.01.T01:CDS
TCTATTATTATTCTGCGCAT+TGG 0.472744 8:+13945800 MsG0880042779.01.T01:three_prime_UTR
GGTGTTAAAAGTAAAACTCT+AGG 0.478246 8:+13945825 MsG0880042779.01.T01:three_prime_UTR
TGTTTAATCTAATTTGGTAG+TGG 0.485287 8:-13945896 None:intergenic
AGTAACAATAAAACCCAAAT+GGG 0.490147 8:-13946009 None:intergenic
GGCAGCTCTGGCAATTCAGA+TGG 0.502691 8:+13945197 MsG0880042779.01.T01:CDS
TCTTGGGGCTGGTGTGATAG+AGG 0.507053 8:+13945116 MsG0880042779.01.T01:CDS
CCAAAATATCTGTTGCGGAT+AGG 0.514090 8:-13945567 None:intergenic
ACATAAACAGTTGTGTATTG+AGG 0.517017 8:-13944677 None:intergenic
ATATCTGTTGCGGATAGGCC+TGG 0.519370 8:-13945562 None:intergenic
TAGAGGCGCAGCAGCAGGTG+GGG 0.531472 8:-13945539 None:intergenic
CAGCTAGCAATGAGCAAGAT+GGG 0.532413 8:+13945601 MsG0880042779.01.T01:CDS
GAAGCAGTTCCAGGTGGAGT+GGG 0.535669 8:-13945505 None:intergenic
GCAGCTAGCAATGAGCAAGA+TGG 0.547662 8:+13945600 MsG0880042779.01.T01:CDS
TCGTCATTTCCATGCTCTTG+GGG 0.548558 8:+13945101 MsG0880042779.01.T01:CDS
ACCCACCGTCGTATATCGCC+TGG 0.548862 8:-13945693 None:intergenic
TGAAGCAGTTCCAGGTGGAG+TGG 0.549578 8:-13945506 None:intergenic
GTTCAAATATAGTGCTCTTG+GGG 0.552630 8:+13945475 MsG0880042779.01.T01:intron
GTAGAGGCGCAGCAGCAGGT+GGG 0.554923 8:-13945540 None:intergenic
GTTGCGGATAGGCCTGGTAG+AGG 0.555251 8:-13945556 None:intergenic
CTGTTGTCTTAGTTAACAGA+TGG 0.557430 8:+13944569 MsG0880042779.01.T01:intron
TTAAGAGGATGCTGTGCTTG+AGG 0.565759 8:-13945649 None:intergenic
TCACACCAGCCCCAAGAGCA+TGG 0.567987 8:-13945110 None:intergenic
TGTGGGTAACCTTGGGTCGG+AGG 0.581624 8:+13944697 MsG0880042779.01.T01:CDS
TTATGTGGGTAACCTTGGGT+CGG 0.588868 8:+13944694 MsG0880042779.01.T01:CDS
ACCCAAATCCTTTATCACGC+TGG 0.596264 8:-13945149 None:intergenic
GTGTTAAAAGTAAAACTCTA+GGG 0.603841 8:+13945826 MsG0880042779.01.T01:three_prime_UTR
GCAGCTCTGGCAATTCAGAT+GGG 0.613986 8:+13945198 MsG0880042779.01.T01:CDS
TTTGCCACAGAGATAAGACT+GGG 0.619779 8:-13945226 None:intergenic
GGATTTGAAGCAGTTCCAGG+TGG 0.620256 8:-13945511 None:intergenic
GTATGCCAAAATATCTGTTG+CGG 0.625088 8:-13945572 None:intergenic
CAATACACAACTGTTTATGT+GGG 0.627906 8:+13944680 MsG0880042779.01.T01:CDS
CAAGAGCATGGAAATGACGA+TGG 0.630427 8:-13945098 None:intergenic
AGTTTCTTACCTCCGACCCA+AGG 0.634040 8:-13944706 None:intergenic
GCCAGGCGATATACGACGGT+GGG 0.639764 8:+13945692 MsG0880042779.01.T01:CDS
ATCTCTTTACCGTCCTCTGT+AGG 0.641602 8:-13944626 None:intergenic
ATGAGTTTGTATCATGTATG+CGG 0.659413 8:+13945924 MsG0880042779.01.T01:three_prime_UTR
GAGATATAGTACTCATGCTG+AGG 0.660148 8:+13945176 MsG0880042779.01.T01:CDS
CTAGCAATGAGCAAGATGGG+TGG 0.664649 8:+13945604 MsG0880042779.01.T01:CDS
TTCAAATATAGTGCTCTTGG+GGG 0.666129 8:+13945476 MsG0880042779.01.T01:intron
AATGCCCAGTCTTATCTCTG+TGG 0.700945 8:+13945222 MsG0880042779.01.T01:CDS
AGCCAGGCGATATACGACGG+TGG 0.723213 8:+13945691 MsG0880042779.01.T01:CDS
GCTAGCCAGGCGATATACGA+CGG 0.738610 8:+13945688 MsG0880042779.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATATTGTAAAATCAAA+AGG - Chr8:13944969-13944988 None:intergenic 15.0%
!! ATAAAACAAAAAGCTAAAAT+AGG - Chr8:13944883-13944902 None:intergenic 15.0%
!! ATAACAACAATAAGATATAT+AGG - Chr8:13946070-13946089 None:intergenic 15.0%
!! TACAAATGTTTAATCTAATT+TGG - Chr8:13945905-13945924 None:intergenic 15.0%
!!! CTTTTTCCTTTTAAATTAAA+TGG + Chr8:13945859-13945878 MsG0880042779.01.T01:three_prime_UTR 15.0%
!!! TATATCTATTTTTCAATCTA+TGG + Chr8:13944734-13944753 MsG0880042779.01.T01:intron 15.0%
!! CTTTATTCATGAATTTGATT+TGG + Chr8:13945422-13945441 MsG0880042779.01.T01:intron 20.0%
!! TTAATACATCTCTAACATAA+TGG - Chr8:13944924-13944943 None:intergenic 20.0%
!! TTAATCACCTAAAAATCATT+AGG - Chr8:13944517-13944536 None:intergenic 20.0%
!! TTCGATTTAAAAATAGATCT+GGG + Chr8:13944453-13944472 MsG0880042779.01.T01:intron 20.0%
!! TTTCGATTTAAAAATAGATC+TGG + Chr8:13944452-13944471 MsG0880042779.01.T01:intron 20.0%
!!! TTTCCTTTTAAATTAAATGG+TGG + Chr8:13945862-13945881 MsG0880042779.01.T01:three_prime_UTR 20.0%
! AAAGGTCGTAATGATTAAAA+TGG - Chr8:13945048-13945067 None:intergenic 25.0%
! AGTAACAATAAAACCCAAAT+GGG - Chr8:13946012-13946031 None:intergenic 25.0%
! GTGTTAAAAGTAAAACTCTA+GGG + Chr8:13945826-13945845 MsG0880042779.01.T01:three_prime_UTR 25.0%
! TAGTAACAATAAAACCCAAA+TGG - Chr8:13946013-13946032 None:intergenic 25.0%
! TCGATTTAAAAATAGATCTG+GGG + Chr8:13944454-13944473 MsG0880042779.01.T01:intron 25.0%
! TGTTTAATCTAATTTGGTAG+TGG - Chr8:13945899-13945918 None:intergenic 25.0%
! TTTATTCTCCATTTCTACTT+TGG + Chr8:13944898-13944917 MsG0880042779.01.T01:intron 25.0%
!! AGGAATACAAATATTGGTTA+TGG - Chr8:13944857-13944876 None:intergenic 25.0%
!! TCACCACCATTTAATTTAAA+AGG - Chr8:13945868-13945887 None:intergenic 25.0%
!!! AATAATGTTTTGAAACCCAT+TGG + Chr8:13944830-13944849 MsG0880042779.01.T01:intron 25.0%
!!! ATTTTAATCATTACGACCTT+TGG + Chr8:13945047-13945066 MsG0880042779.01.T01:intron 25.0%
!!! TTTTAAATTAAATGGTGGTG+AGG + Chr8:13945867-13945886 MsG0880042779.01.T01:three_prime_UTR 25.0%
ACATAAACAGTTGTGTATTG+AGG - Chr8:13944680-13944699 None:intergenic 30.0%
ACCTAAAAATCATTAGGTCA+AGG - Chr8:13944511-13944530 None:intergenic 30.0%
AGGTGAAGGAATACAAATAT+TGG - Chr8:13944863-13944882 None:intergenic 30.0%
ATGAGTTTGTATCATGTATG+CGG + Chr8:13945924-13945943 MsG0880042779.01.T01:three_prime_UTR 30.0%
CAAAAAGCTAAAATAGGTGA+AGG - Chr8:13944877-13944896 None:intergenic 30.0%
CAATACACAACTGTTTATGT+GGG + Chr8:13944680-13944699 MsG0880042779.01.T01:CDS 30.0%
CCTAAAAATCATTAGGTCAA+GGG - Chr8:13944510-13944529 None:intergenic 30.0%
CGATTTAAAAATAGATCTGG+GGG + Chr8:13944455-13944474 MsG0880042779.01.T01:intron 30.0%
GCATCATAGAATAATAAGCT+TGG - Chr8:13944804-13944823 None:intergenic 30.0%
GGTGTTAAAAGTAAAACTCT+AGG + Chr8:13945825-13945844 MsG0880042779.01.T01:three_prime_UTR 30.0%
TAAGCTTGGAAAATCATCAA+TGG - Chr8:13944790-13944809 None:intergenic 30.0%
TCAATACACAACTGTTTATG+TGG + Chr8:13944679-13944698 MsG0880042779.01.T01:CDS 30.0%
TCTATTATTATTCTGCGCAT+TGG + Chr8:13945800-13945819 MsG0880042779.01.T01:three_prime_UTR 30.0%
TCTCTGTGGCAAAATAATTA+AGG + Chr8:13945236-13945255 MsG0880042779.01.T01:CDS 30.0%
TGTTCAAATATAGTGCTCTT+GGG + Chr8:13945474-13945493 MsG0880042779.01.T01:intron 30.0%
TTGAACACAATAATAGTCAG+AGG - Chr8:13945461-13945480 None:intergenic 30.0%
TTTATGCTGAATATTGTGTG+AGG + Chr8:13945326-13945345 MsG0880042779.01.T01:intron 30.0%
TTTGAACAAAACAGTTCATC+TGG + Chr8:13944757-13944776 MsG0880042779.01.T01:intron 30.0%
! AAATATTGGTTATGGACCAA+TGG - Chr8:13944849-13944868 None:intergenic 30.0%
! AATATTGGTTATGGACCAAT+GGG - Chr8:13944848-13944867 None:intergenic 30.0%
!! AAACACTTTTTATCCTACAG+AGG + Chr8:13944613-13944632 MsG0880042779.01.T01:CDS 30.0%
AAGCATGTCAATTGTCAATG+TGG - Chr8:13945365-13945384 None:intergenic 35.0%
ATAGTCAGAGGCAATAAGAT+CGG - Chr8:13945449-13945468 None:intergenic 35.0%
ATTAGGTCAAGGGTAAAAAG+AGG - Chr8:13944500-13944519 None:intergenic 35.0%
CATAATGGCCAAAGTAGAAA+TGG - Chr8:13944909-13944928 None:intergenic 35.0%
CTGTTGTCTTAGTTAACAGA+TGG + Chr8:13944569-13944588 MsG0880042779.01.T01:intron 35.0%
GTATGCCAAAATATCTGTTG+CGG - Chr8:13945575-13945594 None:intergenic 35.0%
GTGTTCAAATATAGTGCTCT+TGG + Chr8:13945473-13945492 MsG0880042779.01.T01:intron 35.0%
GTTCAAATATAGTGCTCTTG+GGG + Chr8:13945475-13945494 MsG0880042779.01.T01:intron 35.0%
TTCAAATATAGTGCTCTTGG+GGG + Chr8:13945476-13945495 MsG0880042779.01.T01:intron 35.0%
! ACTTTTTATCCTACAGAGGA+CGG + Chr8:13944617-13944636 MsG0880042779.01.T01:CDS 35.0%
! ATGTTTTCATCTCACCCATT+TGG + Chr8:13945995-13946014 MsG0880042779.01.T01:three_prime_UTR 35.0%
! CCCTTGACCTAATGATTTTT+AGG + Chr8:13944507-13944526 MsG0880042779.01.T01:intron 35.0%
! TGTTTTCATCTCACCCATTT+GGG + Chr8:13945996-13946015 MsG0880042779.01.T01:three_prime_UTR 35.0%
! TTATTATTCTGCGCATTGGT+TGG + Chr8:13945804-13945823 MsG0880042779.01.T01:three_prime_UTR 35.0%
!! CTGTATCTTTGAAATCTGTG+CGG + Chr8:13945010-13945029 MsG0880042779.01.T01:intron 35.0%
ACTGTTTATGTGGGTAACCT+TGG + Chr8:13944689-13944708 MsG0880042779.01.T01:CDS 40.0%
ATCGTCATTTCCATGCTCTT+GGG + Chr8:13945100-13945119 MsG0880042779.01.T01:CDS 40.0%
CCAAAATATCTGTTGCGGAT+AGG - Chr8:13945570-13945589 None:intergenic 40.0%
CTGTTTATGTGGGTAACCTT+GGG + Chr8:13944690-13944709 MsG0880042779.01.T01:CDS 40.0%
GAGATATAGTACTCATGCTG+AGG + Chr8:13945176-13945195 MsG0880042779.01.T01:CDS 40.0%
GTCGTGTATATTTCACAGCA+CGG - Chr8:13945395-13945414 None:intergenic 40.0%
GTGTATTGAGGATTGTTCTC+AGG - Chr8:13944668-13944687 None:intergenic 40.0%
TCCAGCGTGATAAAGGATTT+GGG + Chr8:13945148-13945167 MsG0880042779.01.T01:CDS 40.0%
TCGTGTATATTTCACAGCAC+GGG - Chr8:13945394-13945413 None:intergenic 40.0%
TGAATATTGTGTGAGGAGTG+TGG + Chr8:13945333-13945352 MsG0880042779.01.T01:intron 40.0%
TTTGCCACAGAGATAAGACT+GGG - Chr8:13945229-13945248 None:intergenic 40.0%
! CCTATCCGCAACAGATATTT+TGG + Chr8:13945567-13945586 MsG0880042779.01.T01:CDS 40.0%
! TTTTCACCTTTTGATGTCGC+TGG + Chr8:13945264-13945283 MsG0880042779.01.T01:intron 40.0%
! TTTTGCCACAGAGATAAGAC+TGG - Chr8:13945230-13945249 None:intergenic 40.0%
!!! CAGATATTTTGGCATACGAG+CGG + Chr8:13945578-13945597 MsG0880042779.01.T01:CDS 40.0%
ACCCAAATCCTTTATCACGC+TGG - Chr8:13945152-13945171 None:intergenic 45.0%
ATCTCTTTACCGTCCTCTGT+AGG - Chr8:13944629-13944648 None:intergenic 45.0%
CAGCTAGCAATGAGCAAGAT+GGG + Chr8:13945601-13945620 MsG0880042779.01.T01:CDS 45.0%
CATCGTCATTTCCATGCTCT+TGG + Chr8:13945099-13945118 MsG0880042779.01.T01:CDS 45.0%
CCTCTTAAGCAAGCTGCAAT+TGG + Chr8:13945664-13945683 MsG0880042779.01.T01:CDS 45.0%
CTGGGGGCTTACTAAAACTT+TGG + Chr8:13944471-13944490 MsG0880042779.01.T01:intron 45.0%
GTCCAGCGTGATAAAGGATT+TGG + Chr8:13945147-13945166 MsG0880042779.01.T01:CDS 45.0%
GTTGCCTGTAGAATCACCAA+AGG - Chr8:13945066-13945085 None:intergenic 45.0%
TCGTCATTTCCATGCTCTTG+GGG + Chr8:13945101-13945120 MsG0880042779.01.T01:CDS 45.0%
TTAAGAGGATGCTGTGCTTG+AGG - Chr8:13945652-13945671 None:intergenic 45.0%
TTATGTGGGTAACCTTGGGT+CGG + Chr8:13944694-13944713 MsG0880042779.01.T01:CDS 45.0%
! AATGCCCAGTCTTATCTCTG+TGG + Chr8:13945222-13945241 MsG0880042779.01.T01:CDS 45.0%
! ACGACCTTTGGTGATTCTAC+AGG + Chr8:13945059-13945078 MsG0880042779.01.T01:intron 45.0%
! AGAGGATTTGAAGCAGTTCC+AGG - Chr8:13945517-13945536 None:intergenic 45.0%
! CAAGAGCATGGAAATGACGA+TGG - Chr8:13945101-13945120 None:intergenic 45.0%
! CCAATTGCAGCTTGCTTAAG+AGG - Chr8:13945667-13945686 None:intergenic 45.0%
AGTGAGCCAGCGACATCAAA+AGG - Chr8:13945273-13945292 None:intergenic 50.0%
AGTTTCTTACCTCCGACCCA+AGG - Chr8:13944709-13944728 None:intergenic 50.0%
ATATCTGTTGCGGATAGGCC+TGG - Chr8:13945565-13945584 None:intergenic 50.0%
CTAGCAATGAGCAAGATGGG+TGG + Chr8:13945604-13945623 MsG0880042779.01.T01:CDS 50.0%
GCAGCTAGCAATGAGCAAGA+TGG + Chr8:13945600-13945619 MsG0880042779.01.T01:CDS 50.0%
GTTCGTGTCCAGCGTGATAA+AGG + Chr8:13945141-13945160 MsG0880042779.01.T01:CDS 50.0%
! GCAGCTCTGGCAATTCAGAT+GGG + Chr8:13945198-13945217 MsG0880042779.01.T01:CDS 50.0%
! GCTGTGCAGCAGCAACATTT+TGG - Chr8:13945720-13945739 None:intergenic 50.0%
! GGATTTGAAGCAGTTCCAGG+TGG - Chr8:13945514-13945533 None:intergenic 50.0%
AGCTGCAATTGGAGCTAGCC+AGG + Chr8:13945675-13945694 MsG0880042779.01.T01:CDS 55.0%
CATTTCCATGCTCTTGGGGC+TGG + Chr8:13945105-13945124 MsG0880042779.01.T01:CDS 55.0%
GAAGCAGTTCCAGGTGGAGT+GGG - Chr8:13945508-13945527 None:intergenic 55.0%
GCTAGCCAGGCGATATACGA+CGG + Chr8:13945688-13945707 MsG0880042779.01.T01:CDS 55.0%
TACTCATGCTGAGGCAGCTC+TGG + Chr8:13945185-13945204 MsG0880042779.01.T01:CDS 55.0%
TGAAGCAGTTCCAGGTGGAG+TGG - Chr8:13945509-13945528 None:intergenic 55.0%
! GGCAGCTCTGGCAATTCAGA+TGG + Chr8:13945197-13945216 MsG0880042779.01.T01:CDS 55.0%
! TCTTGGGGCTGGTGTGATAG+AGG + Chr8:13945116-13945135 MsG0880042779.01.T01:CDS 55.0%
ACCCACCGTCGTATATCGCC+TGG - Chr8:13945696-13945715 None:intergenic 60.0%
AGCCAGGCGATATACGACGG+TGG + Chr8:13945691-13945710 MsG0880042779.01.T01:CDS 60.0%
GCCAGGCGATATACGACGGT+GGG + Chr8:13945692-13945711 MsG0880042779.01.T01:CDS 60.0%
GTTGCGGATAGGCCTGGTAG+AGG - Chr8:13945559-13945578 None:intergenic 60.0%
TCACACCAGCCCCAAGAGCA+TGG - Chr8:13945113-13945132 None:intergenic 60.0%
TGTGGGTAACCTTGGGTCGG+AGG + Chr8:13944697-13944716 MsG0880042779.01.T01:CDS 60.0%
! GTAGAGGCGCAGCAGCAGGT+GGG - Chr8:13945543-13945562 None:intergenic 65.0%
! TAGAGGCGCAGCAGCAGGTG+GGG - Chr8:13945542-13945561 None:intergenic 65.0%
CCTGCTGCTGCGCCTCTACC+AGG + Chr8:13945544-13945563 MsG0880042779.01.T01:CDS 70.0%
GCAGCAGCAGGTGGGGGAAG+AGG - Chr8:13945535-13945554 None:intergenic 70.0%
GGGAGCAAGCCCACTCCACC+TGG + Chr8:13945496-13945515 MsG0880042779.01.T01:CDS 70.0%
! AGAGGCGCAGCAGCAGGTGG+GGG - Chr8:13945541-13945560 None:intergenic 70.0%
! CCTGGTAGAGGCGCAGCAGC+AGG - Chr8:13945547-13945566 None:intergenic 70.0%
! GGTAGAGGCGCAGCAGCAGG+TGG - Chr8:13945544-13945563 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 13944415 13946089 13944415 ID=MsG0880042779.01;Name=MsG0880042779.01
Chr8 mRNA 13944415 13946089 13944415 ID=MsG0880042779.01.T01;Parent=MsG0880042779.01;Name=MsG0880042779.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.5|1|0.66|0.5|4|330|196
Chr8 exon 13944415 13944417 13944415 ID=MsG0880042779.01.T01:exon:13372;Parent=MsG0880042779.01.T01
Chr8 exon 13944581 13944718 13944581 ID=MsG0880042779.01.T01:exon:13373;Parent=MsG0880042779.01.T01
Chr8 exon 13945081 13945257 13945081 ID=MsG0880042779.01.T01:exon:13374;Parent=MsG0880042779.01.T01
Chr8 exon 13945487 13946089 13945487 ID=MsG0880042779.01.T01:exon:13375;Parent=MsG0880042779.01.T01
Chr8 CDS 13944415 13944417 13944415 ID=MsG0880042779.01.T01:cds;Parent=MsG0880042779.01.T01
Chr8 CDS 13944581 13944718 13944581 ID=MsG0880042779.01.T01:cds;Parent=MsG0880042779.01.T01
Chr8 CDS 13945081 13945257 13945081 ID=MsG0880042779.01.T01:cds;Parent=MsG0880042779.01.T01
Chr8 CDS 13945487 13945759 13945487 ID=MsG0880042779.01.T01:cds;Parent=MsG0880042779.01.T01
Chr8 three_prime_UTR 13945760 13946089 13945760 ID=MsG0880042779.01.T01:three_prime_utr;Parent=MsG0880042779.01.T01
Gene Sequence

>MsG0880042779.01.T01

ATGTTAACAGATGGAATACTAGATATTCAATTAACAAACACTTTTTATCCTACAGAGGACGGTAAAGAGATATCTAGCAATGATGTTCCTGAGAACAATCCTCAATACACAACTGTTTATGTGGGTAACCTTGGGTCGGAGGCAACACAGCTTGATCTCCATCGTCATTTCCATGCTCTTGGGGCTGGTGTGATAGAGGAAGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGATATAGTACTCATGCTGAGGCAGCTCTGGCAATTCAGATGGGAAATGCCCAGTCTTATCTCTGTGGCAAAATAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCGCCTCTACCAGGCCTATCCGCAACAGATATTTTGGCATACGAGCGGCAGCTAGCAATGAGCAAGATGGGTGGAGTTCATGCTGCGTTGATGCATCCTCAAGCACAGCATCCTCTTAAGCAAGCTGCAATTGGAGCTAGCCAGGCGATATACGACGGTGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTATTATCAGTAA

Protein sequence

>MsG0880042779.01.T01

MLTDGILDIQLTNTFYPTEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ*