AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005544.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005544.01.T01 MTR_1g102550 99.083 109 1 0 1 109 357 465 1.74e-74 228
MsG0180005544.01.T01 MTR_6g016335 74.038 104 27 0 1 104 379 482 3.12e-51 168
MsG0180005544.01.T01 MTR_6g016325 71.717 99 28 0 6 104 29 127 1.19e-49 154
MsG0180005544.01.T02 MTR_1g102550 98.492 199 3 0 1 199 108 306 3.56e-144 410
MsG0180005544.01.T02 MTR_6g016335 77.889 199 44 0 1 199 130 328 4.62e-112 329
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005544.01.T01 AT3G22890 88.991 109 12 0 1 109 355 463 1.81e-67 209
MsG0180005544.01.T01 AT4G14680 88.073 109 13 0 1 109 357 465 2.59e-67 209
MsG0180005544.01.T01 AT5G43780 84.259 108 16 1 1 107 359 466 1.20e-60 192
MsG0180005544.01.T01 AT1G19920 78.947 95 20 0 1 95 369 463 7.23e-51 167
MsG0180005544.01.T01 AT4G14680 87.500 72 9 0 1 72 357 428 1.70e-37 132
MsG0180005544.01.T02 AT3G22890 87.437 199 25 0 1 199 106 304 5.30e-128 369
MsG0180005544.01.T02 AT5G43780 83.417 199 33 0 1 199 110 308 2.78e-122 354
MsG0180005544.01.T02 AT4G14680 82.915 199 34 0 1 199 108 306 3.36e-119 346
MsG0180005544.01.T02 AT4G14680 83.333 198 33 0 1 198 108 305 1.37e-118 346
MsG0180005544.01.T02 AT1G19920 76.263 198 47 0 1 198 120 317 7.80e-110 323

Find 130 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTAAACATTCTTCCTTTC+AGG 0.110980 1:-93068836 MsG0180005544.01.T01:CDS
GAGCCATCCCAAACTTTATT+AGG 0.164478 1:+93068244 None:intergenic
CCGCAAGCGGCTTCTTGATA+TGG 0.186607 1:-93069674 MsG0180005544.01.T01:five_prime_UTR
CGAGCTATCCTTTCTTCTTT+AGG 0.220343 1:+93069943 None:intergenic
CCAAACTTTATTAGGGGATT+AGG 0.255588 1:+93068252 None:intergenic
CCTAATCCCCTAATAAAGTT+TGG 0.276547 1:-93068252 MsG0180005544.01.T01:three_prime_UTR
CAGGATTTCGTCTTCATATC+AGG 0.284177 1:-93068673 MsG0180005544.01.T01:CDS
AGCCATCCCAAACTTTATTA+GGG 0.307132 1:+93068245 None:intergenic
CTATAACTAATGCTGGAAAT+TGG 0.315885 1:-93069876 MsG0180005544.01.T01:five_prime_UTR
ATCCTCTTGCTTCATCCACT+TGG 0.327829 1:-93069637 MsG0180005544.01.T01:five_prime_UTR
GTGCATGGGAGACGGGAATA+TGG 0.342460 1:+93069029 None:intergenic
CCATTGCCTCTCTGTAAGTA+TGG 0.347967 1:-93068210 MsG0180005544.01.T01:three_prime_UTR
TCCTCTTGCTTCATCCACTT+GGG 0.354000 1:-93069636 MsG0180005544.01.T01:five_prime_UTR
ACGAAATCCTGAGGCCTTGA+TGG 0.360527 1:+93068685 None:intergenic
ACTTAAAGTTTCTCCCAATC+AGG 0.362842 1:+93068321 None:intergenic
CACTAGACCGGAACAGGTTC+CGG 0.365121 1:+93068363 None:intergenic
TTCAAGCAATGGCAAAGTTC+CGG 0.370171 1:-93068382 MsG0180005544.01.T01:CDS
GGCCATTGTGGACAGGATTC+CGG 0.375621 1:+93069719 None:intergenic
CAAAGTTCCGGAACCTGTTC+CGG 0.376156 1:-93068370 MsG0180005544.01.T01:CDS
AGCATTAGTTATAGTTTCTT+CGG 0.377760 1:+93069885 None:intergenic
GATTGTGGTTTGCAAATGAT+TGG 0.379825 1:-93068137 MsG0180005544.01.T01:three_prime_UTR
GTTATAGTTTCTTCGGCATA+AGG 0.383634 1:+93069892 None:intergenic
CATATCAAGAAGCCGCTTGC+GGG 0.394862 1:+93069675 None:intergenic
CGCAAGCGGCTTCTTGATAT+GGG 0.397191 1:-93069673 MsG0180005544.01.T01:five_prime_UTR
TTTAATGTATAAACCTGATT+GGG 0.399533 1:-93068334 MsG0180005544.01.T01:three_prime_UTR
GGGATTAGGCCATGAGATCT+TGG 0.399964 1:+93068266 None:intergenic
CTAATCCCCTAATAAAGTTT+GGG 0.400182 1:-93068251 MsG0180005544.01.T01:three_prime_UTR
CCTAAACATTCTTCCTTTCA+GGG 0.410178 1:-93068835 MsG0180005544.01.T01:intron
GATTTATGTGCCCTGGTGGC+TGG 0.411095 1:-93068440 MsG0180005544.01.T01:CDS
CTGTGTTTGCGTTCCAGCTC+CGG 0.416559 1:-93069738 MsG0180005544.01.T01:five_prime_UTR
AAGAAAGGATAGCTCGGACT+TGG 0.417849 1:-93069936 MsG0180005544.01.T01:five_prime_UTR
AGAAAGGATAGCTCGGACTT+GGG 0.421513 1:-93069935 MsG0180005544.01.T01:five_prime_UTR
CTGATGATGTCCCTCTTGAT+TGG 0.423972 1:-93069600 MsG0180005544.01.T01:five_prime_UTR
ACAGGATGGCCCATGCCTGC+AGG 0.424384 1:+93068927 None:intergenic
AATGCTGGAAATTGGTTGAT+TGG 0.426694 1:-93069868 MsG0180005544.01.T01:five_prime_UTR
AAGCCCATCATGATACTTGA+TGG 0.430211 1:+93069822 None:intergenic
CTTTGATCCATCAAGGCCTC+AGG 0.430540 1:-93068692 MsG0180005544.01.T01:CDS
TCGTCGAGACCCTGCAGGCA+TGG 0.436564 1:-93068937 MsG0180005544.01.T01:exon
ATACAACACTAGACCGGAAC+AGG 0.442459 1:+93068357 None:intergenic
TGTGGACAGGATTCCGGAGC+TGG 0.447826 1:+93069725 None:intergenic
CCCTGAAAGGAAGAATGTTT+AGG 0.461067 1:+93068835 None:intergenic
CTTTCTTAGGTACTTGAGGA+TGG 0.461877 1:-93069081 MsG0180005544.01.T01:intron
CAATACTTTCTTTCCGTGGT+CGG 0.462303 1:+93068881 None:intergenic
TGATCTTTCTTAGGTACTTG+AGG 0.466577 1:-93069085 MsG0180005544.01.T01:intron
CCTGATGGATTTATGTGCCC+TGG 0.467387 1:-93068447 MsG0180005544.01.T01:CDS
AAGAGGGACATCATCAGCTT+TGG 0.467660 1:+93069606 None:intergenic
ATGGACACAACTGTTGTCTC+TGG 0.474500 1:+93069048 None:intergenic
GAAGAAACTATAACTAATGC+TGG 0.479156 1:-93069883 MsG0180005544.01.T01:five_prime_UTR
CCGTCTCCCATGCACTATGC+TGG 0.482401 1:-93069021 MsG0180005544.01.T01:five_prime_UTR
ATGTTTAGGCGCTCGAGTCC+AGG 0.484149 1:+93068849 None:intergenic
AGTTTAGTGCTTTCAAGCAA+TGG 0.487220 1:-93068393 MsG0180005544.01.T01:CDS
CGTCGAGACCCTGCAGGCAT+GGG 0.489760 1:-93068936 MsG0180005544.01.T01:exon
TCTTCGGCATAAGGCAGGCC+GGG 0.491192 1:+93069901 None:intergenic
ATTGTGGTTTGCAAATGATT+GGG 0.492045 1:-93068136 MsG0180005544.01.T01:three_prime_UTR
GCAAAGGCTAGGATCAATGC+TGG 0.493443 1:-93068977 MsG0180005544.01.T01:five_prime_UTR
TTCTTCGGCATAAGGCAGGC+CGG 0.503309 1:+93069900 None:intergenic
CCTCTTGCTTCATCCACTTG+GGG 0.504239 1:-93069635 MsG0180005544.01.T01:five_prime_UTR
TAGTTTCTTCGGCATAAGGC+AGG 0.506724 1:+93069896 None:intergenic
AAGAAGCCGCTTGCGGGTAT+CGG 0.507237 1:+93069681 None:intergenic
CAGCATAGTGCATGGGAGAC+GGG 0.510140 1:+93069022 None:intergenic
AACTCATCACGGAGTTCTGA+AGG 0.511645 1:+93069781 None:intergenic
GGTGAAATCAGTGTCTTAGC+AGG 0.512159 1:+93068287 None:intergenic
TGCTCAATACTTTCTTTCCG+TGG 0.512487 1:+93068877 None:intergenic
TCTCTGTAATATATTGATTG+TGG 0.515230 1:-93068152 MsG0180005544.01.T01:three_prime_UTR
CCAGGGCACATAAATCCATC+AGG 0.520870 1:+93068447 None:intergenic
TGGCATTCTTTGATCCATCA+AGG 0.522843 1:-93068699 MsG0180005544.01.T01:CDS
CAGGATGGCCCATGCCTGCA+GGG 0.525821 1:+93068928 None:intergenic
CAAAGGCTAGGATCAATGCT+GGG 0.528599 1:-93068976 MsG0180005544.01.T01:five_prime_UTR
ATAAGCATCCTAAAGAAGAA+AGG 0.528895 1:-93069951 MsG0180005544.01.T01:five_prime_UTR
ACTAGCACCTTCCAGCCACC+AGG 0.530061 1:+93068429 None:intergenic
TGCTGCTTATGACAAGACTC+AGG 0.532676 1:-93068728 MsG0180005544.01.T01:CDS
GAACCCATCAAGTATCATGA+TGG 0.533542 1:-93069826 MsG0180005544.01.T01:five_prime_UTR
CTGATTTCACCAAGATCTCA+TGG 0.533656 1:-93068275 MsG0180005544.01.T01:three_prime_UTR
AAAGCATGGCCATTGTGGAC+AGG 0.534971 1:+93069712 None:intergenic
CCAGCATAGTGCATGGGAGA+CGG 0.537239 1:+93069021 None:intergenic
TGACAAGACTCAGGGTAAGA+TGG 0.539176 1:-93068719 MsG0180005544.01.T01:CDS
AGTTCATCAATTACCCTGAA+AGG 0.541572 1:+93068822 None:intergenic
TGATGGGTTCTATAACCTCT+AGG 0.543315 1:+93069839 None:intergenic
CTAAAGAAGAAAGGATAGCT+CGG 0.547383 1:-93069942 MsG0180005544.01.T01:five_prime_UTR
AACAAAGAAAGTCCTCCTGA+TGG 0.550290 1:-93068462 MsG0180005544.01.T01:CDS
AAAGTATTGAGCATGGCACC+TGG 0.552120 1:-93068867 MsG0180005544.01.T01:CDS
TATGTGCCCTGGTGGCTGGA+AGG 0.556507 1:-93068436 MsG0180005544.01.T01:CDS
CATTGTCGTCGAGACCCTGC+AGG 0.557517 1:-93068942 MsG0180005544.01.T01:five_prime_UTR
GAAAGGATAGCTCGGACTTG+GGG 0.563416 1:-93069934 MsG0180005544.01.T01:five_prime_UTR
ACTTGGGGAACAACTGCTCC+CGG 0.563450 1:-93069919 MsG0180005544.01.T01:five_prime_UTR
GAGAATGAAACAACATGAGA+AGG 0.566866 1:-93069578 MsG0180005544.01.T01:intron
TGCAGATGCGGACACTTGCT+AGG 0.568842 1:-93068485 MsG0180005544.01.T01:intron
CTCTTGCTTCATCCACTTGG+GGG 0.575679 1:-93069634 MsG0180005544.01.T01:five_prime_UTR
CAGTGGTCCAGCATAGTGCA+TGG 0.581870 1:+93069014 None:intergenic
ATTAAAATACAACACTAGAC+CGG 0.582109 1:+93068351 None:intergenic
AACCCATCAAGTATCATGAT+GGG 0.586308 1:-93069825 MsG0180005544.01.T01:five_prime_UTR
TCCCCTAATAAAGTTTGGGA+TGG 0.595490 1:-93068247 MsG0180005544.01.T01:three_prime_UTR
AGCCCATCATGATACTTGAT+GGG 0.597356 1:+93069823 None:intergenic
GCCATCCCAAACTTTATTAG+GGG 0.598743 1:+93068246 None:intergenic
GCTGGAAATTGGTTGATTGG+TGG 0.600582 1:-93069865 MsG0180005544.01.T01:five_prime_UTR
CCATATCAAGAAGCCGCTTG+CGG 0.602478 1:+93069674 None:intergenic
GTTTCATTCTCCAATCAAGA+GGG 0.604184 1:+93069590 None:intergenic
TGCAGTGGCATGCAAAGGCT+AGG 0.605138 1:-93068988 MsG0180005544.01.T01:five_prime_UTR
TGTTTCATTCTCCAATCAAG+AGG 0.605490 1:+93069589 None:intergenic
CCATACTTACAGAGAGGCAA+TGG 0.606547 1:+93068210 None:intergenic
TGCATGCCACTGCACCTCAG+TGG 0.608688 1:+93068997 None:intergenic
TGAGGTGCAGTGGCATGCAA+AGG 0.611774 1:-93068993 MsG0180005544.01.T01:five_prime_UTR
TTAGCAAAGCATGGCCATTG+TGG 0.614348 1:+93069707 None:intergenic
AGTGGATGAAGCAAGAGGAT+CGG 0.620500 1:+93069640 None:intergenic
GCTGGACCACTGAGGTGCAG+TGG 0.620784 1:-93069003 MsG0180005544.01.T01:five_prime_UTR
CTGGAACGCAAACACAGCAT+CGG 0.624640 1:+93069744 None:intergenic
AGTGGTCCAGCATAGTGCAT+GGG 0.625547 1:+93069015 None:intergenic
CGTCTTCATATCAGGCACAA+AGG 0.625919 1:-93068665 MsG0180005544.01.T01:intron
TATCGGTCATTAGCAAAGCA+TGG 0.627110 1:+93069698 None:intergenic
GGTGGCACTATAACTGCAAG+AGG 0.629772 1:+93068175 None:intergenic
ACTCATCACGGAGTTCTGAA+GGG 0.630273 1:+93069782 None:intergenic
AACTCCGTGATGAGTTCACA+AGG 0.634078 1:-93069774 MsG0180005544.01.T01:five_prime_UTR
CTCATCACGGAGTTCTGAAG+GGG 0.634921 1:+93069783 None:intergenic
TGCGCCTTGTGAACTCATCA+CGG 0.635019 1:+93069770 None:intergenic
ATCAATATATTACAGAGAGG+TGG 0.636443 1:+93068157 None:intergenic
GATGGATTTATGTGCCCTGG+TGG 0.643053 1:-93068444 MsG0180005544.01.T01:CDS
CTCCGGAATCCTGTCCACAA+TGG 0.646104 1:-93069721 MsG0180005544.01.T01:five_prime_UTR
CGGAAAGAAAGTATTGAGCA+TGG 0.652115 1:-93068874 MsG0180005544.01.T01:CDS
CCCCAAGTGGATGAAGCAAG+AGG 0.656771 1:+93069635 None:intergenic
CTAGCACCTTCCAGCCACCA+GGG 0.661333 1:+93068430 None:intergenic
TAATGACCGATACCCGCAAG+CGG 0.664200 1:-93069687 MsG0180005544.01.T01:five_prime_UTR
GCTGCTTATGACAAGACTCA+GGG 0.667419 1:-93068727 MsG0180005544.01.T01:CDS
GATCTGTATGATGCCGACCA+CGG 0.670228 1:-93068894 MsG0180005544.01.T01:CDS
GTTGATTGGTGGTGACCTAG+AGG 0.677209 1:-93069854 MsG0180005544.01.T01:five_prime_UTR
AAAGGCTAGGATCAATGCTG+GGG 0.690474 1:-93068975 MsG0180005544.01.T01:five_prime_UTR
GGGCACATAAATCCATCAGG+AGG 0.714670 1:+93068450 None:intergenic
TACAAGCCATACTTACAGAG+AGG 0.714959 1:+93068204 None:intergenic
ACAATCAATATATTACAGAG+AGG 0.733857 1:+93068154 None:intergenic
GATATGAAGACGAAATCCTG+AGG 0.734668 1:+93068676 None:intergenic
TGCACTATGCTGGACCACTG+AGG 0.743932 1:-93069011 MsG0180005544.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAATAAAAAAGG+AGG + Chr1:93069388-93069407 None:intergenic 10.0%
!! TATATAATAAAACTACAAAA+AGG + Chr1:93068231-93068250 None:intergenic 10.0%
!!! AATTTATTTTTGTATTTGTT+TGG + Chr1:93069583-93069602 None:intergenic 10.0%
!! AATGAAAAAGAATTAAAACA+AGG + Chr1:93069273-93069292 None:intergenic 15.0%
!! ATCTTAATCTTAATTAACAA+AGG - Chr1:93071402-93071421 MsG0180005544.01.T01:five_prime_UTR 15.0%
!!! AAAAATGAAATTCGTTTTTT+TGG + Chr1:93068254-93068273 None:intergenic 15.0%
!! AGATGAAAAATATTAGTCAT+AGG + Chr1:93069929-93069948 None:intergenic 20.0%
!! AGATTAAGATACAACATAAA+TGG + Chr1:93071392-93071411 None:intergenic 20.0%
!! CAAAAACATGAAATTTACAT+AGG + Chr1:93068913-93068932 None:intergenic 20.0%
!! CTCTCATAAAAAAACAAAAA+TGG + Chr1:93069108-93069127 None:intergenic 20.0%
!! TAGACAAAATACAATATTCA+TGG + Chr1:93069774-93069793 None:intergenic 20.0%
!! TTTAATGTATAAACCTGATT+GGG - Chr1:93071588-93071607 MsG0180005544.01.T01:five_prime_UTR 20.0%
!! TTTAATTGGTCAATTATTGT+AGG - Chr1:93069201-93069220 MsG0180005544.01.T01:intron 20.0%
!!! AACAAAAAACTTTTAAGTAG+TGG + Chr1:93068114-93068133 None:intergenic 20.0%
!!! AATTCTTTTTCATTTTGTGT+TGG - Chr1:93069279-93069298 MsG0180005544.01.T01:intron 20.0%
!!! GGAGTAACAATATTTTTATT+GGG + Chr1:93069000-93069019 None:intergenic 20.0%
!!! TATGACTAATATTTTTCATC+TGG - Chr1:93069928-93069947 MsG0180005544.01.T01:five_prime_UTR 20.0%
!!! TTTTAATGTATAAACCTGAT+TGG - Chr1:93071587-93071606 MsG0180005544.01.T01:five_prime_UTR 20.0%
! AAACTATCTCAAAATCATCA+CGG + Chr1:93069345-93069364 None:intergenic 25.0%
! ACAATCAATATATTACAGAG+AGG + Chr1:93071771-93071790 None:intergenic 25.0%
! AGCATATCATAAAACAATAG+TGG + Chr1:93070554-93070573 None:intergenic 25.0%
! AGCATTAGTTATAGTTTCTT+CGG + Chr1:93070040-93070059 None:intergenic 25.0%
! ATTAAAATACAACACTAGAC+CGG + Chr1:93071574-93071593 None:intergenic 25.0%
! CACAAAAAGAAAAGAAAAAG+TGG + Chr1:93070420-93070439 None:intergenic 25.0%
! GATTATTTCCATTCATTTGT+AGG - Chr1:93071170-93071189 MsG0180005544.01.T01:five_prime_UTR 25.0%
! TAAATTTCCCAGTTGAAATA+AGG + Chr1:93069624-93069643 None:intergenic 25.0%
! TAATCAGTGTTCTTAAATAG+CGG - Chr1:93070476-93070495 MsG0180005544.01.T01:intron 25.0%
! TATTAGTCATAGGAAACAAA+TGG + Chr1:93069919-93069938 None:intergenic 25.0%
! TCAAAGAGAGATTTGAAAAA+AGG - Chr1:93068494-93068513 MsG0180005544.01.T01:intron 25.0%
! TCTTGGTAAAACTATAGTTT+GGG + Chr1:93070705-93070724 None:intergenic 25.0%
! TTCAAAGATTGATGTTGAAT+GGG - Chr1:93068547-93068566 MsG0180005544.01.T01:intron 25.0%
! TTCTCACTAATAACTATATG+AGG - Chr1:93071127-93071146 MsG0180005544.01.T01:intron 25.0%
! TTCTTGGTAAAACTATAGTT+TGG + Chr1:93070706-93070725 None:intergenic 25.0%
! TTTCAAAGATTGATGTTGAA+TGG - Chr1:93068546-93068565 MsG0180005544.01.T01:intron 25.0%
!! AGTATTGTTTTCAATATGCA+GGG - Chr1:93069150-93069169 MsG0180005544.01.T01:intron 25.0%
!! ATTTAAGAACACTGATTAGA+AGG + Chr1:93070474-93070493 None:intergenic 25.0%
!! TAGTATTGTTTTCAATATGC+AGG - Chr1:93069149-93069168 MsG0180005544.01.T01:intron 25.0%
!! TATGTTTTCTTGTTGCAAAT+AGG - Chr1:93069724-93069743 MsG0180005544.01.T01:five_prime_UTR 25.0%
!! TCTCTGTAATATATTGATTG+TGG - Chr1:93071770-93071789 MsG0180005544.01.T01:five_prime_UTR 25.0%
!! TGTATCTTTTGATCTTTCTT+AGG - Chr1:93070828-93070847 MsG0180005544.01.T01:intron 25.0%
!! TTTAAGAACACTGATTAGAA+GGG + Chr1:93070473-93070492 None:intergenic 25.0%
!!! GGGAGTAACAATATTTTTAT+TGG + Chr1:93069001-93069020 None:intergenic 25.0%
!!! GTAAATTTCATGTTTTTGTG+AGG - Chr1:93068915-93068934 MsG0180005544.01.T01:CDS 25.0%
!!! GTATGTTTGTTATGTGATTT+TGG - Chr1:93071279-93071298 MsG0180005544.01.T01:five_prime_UTR 25.0%
!!! TTGTTTTTTGTCTGTTCTTA+GGG - Chr1:93068940-93068959 MsG0180005544.01.T01:exon 25.0%
!!! TTTGTTTTTTGTCTGTTCTT+AGG - Chr1:93068939-93068958 MsG0180005544.01.T01:exon 25.0%
AAAAAGCAACTTGAACCATA+TGG + Chr1:93070783-93070802 None:intergenic 30.0%
AAAAGCAACTTGAACCATAT+GGG + Chr1:93070782-93070801 None:intergenic 30.0%
AATTCACTTAGACTCAATGA+TGG - Chr1:93068650-93068669 MsG0180005544.01.T01:intron 30.0%
ACAAAACCTCTAGATACATA+GGG - Chr1:93069550-93069569 MsG0180005544.01.T01:intron 30.0%
ACAAGGAAACAAAACATGTA+CGG + Chr1:93069256-93069275 None:intergenic 30.0%
ACATGAACAAGAGAAGAAAA+AGG + Chr1:93068810-93068829 None:intergenic 30.0%
AGCATTGTGAAATAGACTAT+AGG - Chr1:93069514-93069533 MsG0180005544.01.T01:intron 30.0%
AGCCAATCATAGAGTTTAAT+TGG - Chr1:93069187-93069206 MsG0180005544.01.T01:intron 30.0%
ATAAGCATCCTAAAGAAGAA+AGG - Chr1:93069971-93069990 MsG0180005544.01.T01:intron 30.0%
ATCAATATATTACAGAGAGG+TGG + Chr1:93071768-93071787 None:intergenic 30.0%
ATCCAGCTCACAAAAAATAA+CGG + Chr1:93070645-93070664 None:intergenic 30.0%
ATTCACTTAGACTCAATGAT+GGG - Chr1:93068651-93068670 MsG0180005544.01.T01:intron 30.0%
ATTCATGGCATGATTATGTA+TGG + Chr1:93069759-93069778 None:intergenic 30.0%
CATGTTCTATTTACCAATGT+TGG - Chr1:93069446-93069465 MsG0180005544.01.T01:intron 30.0%
CTAATCCCCTAATAAAGTTT+GGG - Chr1:93071671-93071690 MsG0180005544.01.T01:five_prime_UTR 30.0%
CTATAACTAATGCTGGAAAT+TGG - Chr1:93070046-93070065 MsG0180005544.01.T01:intron 30.0%
GAAGAAACTATAACTAATGC+TGG - Chr1:93070039-93070058 MsG0180005544.01.T01:intron 30.0%
GACCAATTAAACTCTATGAT+TGG + Chr1:93069192-93069211 None:intergenic 30.0%
GGAATATAATCTGGTAATCT+AGG - Chr1:93068964-93068983 MsG0180005544.01.T01:five_prime_UTR 30.0%
TAACTATATGAGGTTCACAT+AGG - Chr1:93071137-93071156 MsG0180005544.01.T01:intron 30.0%
TCAACACAATCAACTAGAAA+CGG + Chr1:93069803-93069822 None:intergenic 30.0%
TCATCAATAGCCAAAACAAT+CGG + Chr1:93068698-93068717 None:intergenic 30.0%
TGTTGAGGATTAATCAAGTT+GGG + Chr1:93069021-93069040 None:intergenic 30.0%
TTCTTATCACTACAGTTTCT+TGG + Chr1:93070722-93070741 None:intergenic 30.0%
TTGTGTTGGAATGTTATGAT+TGG - Chr1:93069293-93069312 MsG0180005544.01.T01:intron 30.0%
TTGTTGAGGATTAATCAAGT+TGG + Chr1:93069022-93069041 None:intergenic 30.0%
TTTCACAATGCTTTATAACG+AGG + Chr1:93069506-93069525 None:intergenic 30.0%
! ATCTTTGAAAGCTTTATCCT+TGG + Chr1:93068536-93068555 None:intergenic 30.0%
! ATTGTGGTTTGCAAATGATT+GGG - Chr1:93071786-93071805 MsG0180005544.01.T01:five_prime_UTR 30.0%
! TCATCTTCCTTATTTCAACT+GGG - Chr1:93069614-93069633 MsG0180005544.01.T01:five_prime_UTR 30.0%
! TTCATCTTCCTTATTTCAAC+TGG - Chr1:93069613-93069632 MsG0180005544.01.T01:five_prime_UTR 30.0%
!! AGTTGCTCTTTTTGATTCTA+AGG - Chr1:93068751-93068770 MsG0180005544.01.T01:intron 30.0%
!! GTTGCTCTTTTTGATTCTAA+GGG - Chr1:93068752-93068771 MsG0180005544.01.T01:intron 30.0%
!! TATGTATCTAGAGGTTTTGT+GGG + Chr1:93069550-93069569 None:intergenic 30.0%
!! TTGATGATGATCAGAAACAT+CGG - Chr1:93068711-93068730 MsG0180005544.01.T01:CDS 30.0%
!!! TACAGATCTCTTTTTTCAAC+AGG + Chr1:93071016-93071035 None:intergenic 30.0%
!!! TATGGTTCAAGTTGCTTTTT+TGG - Chr1:93070783-93070802 MsG0180005544.01.T01:intron 30.0%
!!! TGTTTTTTGTCTGTTCTTAG+GGG - Chr1:93068941-93068960 MsG0180005544.01.T01:five_prime_UTR 30.0%
AAAGCAACTTGAACCATATG+GGG + Chr1:93070781-93070800 None:intergenic 35.0%
AACCCATCAAGTATCATGAT+GGG - Chr1:93070097-93070116 MsG0180005544.01.T01:intron 35.0%
AATGCTGGAAATTGGTTGAT+TGG - Chr1:93070054-93070073 MsG0180005544.01.T01:intron 35.0%
ACTTAAAGTTTCTCCCAATC+AGG + Chr1:93071604-93071623 None:intergenic 35.0%
AGCCATCCCAAACTTTATTA+GGG + Chr1:93071680-93071699 None:intergenic 35.0%
AGTTCATCAATTACCCTGAA+AGG + Chr1:93071103-93071122 None:intergenic 35.0%
AGTTTAGTGCTTTCAAGCAA+TGG - Chr1:93071529-93071548 MsG0180005544.01.T01:five_prime_UTR 35.0%
ATCATCAGAACAACCAACAT+TGG + Chr1:93069462-93069481 None:intergenic 35.0%
CACAAAACCTCTAGATACAT+AGG - Chr1:93069549-93069568 MsG0180005544.01.T01:intron 35.0%
CCAAACTTTATTAGGGGATT+AGG + Chr1:93071673-93071692 None:intergenic 35.0%
CCTAAACATTCTTCCTTTCA+GGG - Chr1:93071087-93071106 MsG0180005544.01.T01:intron 35.0%
CCTAATCCCCTAATAAAGTT+TGG - Chr1:93071670-93071689 MsG0180005544.01.T01:five_prime_UTR 35.0%
CTAAAGAAGAAAGGATAGCT+CGG - Chr1:93069980-93069999 MsG0180005544.01.T01:intron 35.0%
CTGCTATGCTATAGCATTAT+GGG + Chr1:93070519-93070538 None:intergenic 35.0%
GAGAATGAAACAACATGAGA+AGG - Chr1:93070344-93070363 MsG0180005544.01.T01:intron 35.0%
GTTATAGTTTCTTCGGCATA+AGG + Chr1:93070033-93070052 None:intergenic 35.0%
GTTCTTAAATAGCGGCTAAT+CGG - Chr1:93070484-93070503 MsG0180005544.01.T01:intron 35.0%
GTTGGAATGTTATGATTGGT+TGG - Chr1:93069297-93069316 MsG0180005544.01.T01:intron 35.0%
GTTTCATTCTCCAATCAAGA+GGG + Chr1:93070335-93070354 None:intergenic 35.0%
TCCAGCTCACAAAAAATAAC+GGG + Chr1:93070644-93070663 None:intergenic 35.0%
TCTGCTATGCTATAGCATTA+TGG + Chr1:93070520-93070539 None:intergenic 35.0%
TGAAACTCTGAGTTTCTGAT+TGG + Chr1:93068420-93068439 None:intergenic 35.0%
TGATCTTTCTTAGGTACTTG+AGG - Chr1:93070837-93070856 MsG0180005544.01.T01:intron 35.0%
TGTTTCATTCTCCAATCAAG+AGG + Chr1:93070336-93070355 None:intergenic 35.0%
! AATTGAAATGAAGCGTTTGG+AGG + Chr1:93068634-93068653 None:intergenic 35.0%
! ACTCTATGATTGGCTAAAGA+AGG + Chr1:93069182-93069201 None:intergenic 35.0%
! ATGTTGGTTGTTCTGATGAT+TGG - Chr1:93069462-93069481 MsG0180005544.01.T01:intron 35.0%
! CAAATGGGTATCAAACGTTT+TGG + Chr1:93068352-93068371 None:intergenic 35.0%
! CTATGTATCTAGAGGTTTTG+TGG + Chr1:93069551-93069570 None:intergenic 35.0%
! GATTGTGGTTTGCAAATGAT+TGG - Chr1:93071785-93071804 MsG0180005544.01.T01:five_prime_UTR 35.0%
! GGTATCTTACTCTTTGAGAA+TGG + Chr1:93068789-93068808 None:intergenic 35.0%
! GTGAATTGAAATGAAGCGTT+TGG + Chr1:93068637-93068656 None:intergenic 35.0%
! TATGTCTGTTCCGATTGTTT+TGG - Chr1:93068685-93068704 MsG0180005544.01.T01:CDS 35.0%
! TTACTTGCATTTTGCAGATG+CGG - Chr1:93071425-93071444 MsG0180005544.01.T01:five_prime_UTR 35.0%
!! CAAAAAGGTATTGTTGCTAG+TGG + Chr1:93068216-93068235 None:intergenic 35.0%
!! TTTGGTGTTTGTGTCTATGT+TGG + Chr1:93071336-93071355 None:intergenic 35.0%
!!! GAAAGAGGTTTTGGACAAAA+GGG + Chr1:93068313-93068332 None:intergenic 35.0%
!!! GATCTCTTTTTTCAACAGGA+TGG + Chr1:93071012-93071031 None:intergenic 35.0%
!!! GTTATTTTTTGTGAGCTGGA+TGG - Chr1:93070644-93070663 MsG0180005544.01.T01:intron 35.0%
!!! GTTCAAGTTGCTTTTTTGGA+TGG - Chr1:93070787-93070806 MsG0180005544.01.T01:intron 35.0%
!!! GTTTTTTGTCTGTTCTTAGG+GGG - Chr1:93068942-93068961 MsG0180005544.01.T01:five_prime_UTR 35.0%
!!! TTTTTTGTCTGTTCTTAGGG+GGG - Chr1:93068943-93068962 MsG0180005544.01.T01:five_prime_UTR 35.0%
AAAATTGGTAGAGCTTGTGG+TGG - Chr1:93068466-93068485 MsG0180005544.01.T01:CDS 40.0%
AACAAAGAAAGTCCTCCTGA+TGG - Chr1:93071460-93071479 MsG0180005544.01.T01:five_prime_UTR 40.0%
AAGCCCATCATGATACTTGA+TGG + Chr1:93070103-93070122 None:intergenic 40.0%
AGACAGAAAGACAGAAACGT+AGG + Chr1:93068087-93068106 None:intergenic 40.0%
AGCAGCAACCTACAAATGAA+TGG + Chr1:93071181-93071200 None:intergenic 40.0%
AGCCCATCATGATACTTGAT+GGG + Chr1:93070102-93070121 None:intergenic 40.0%
ATCAGAGTCAACGTAGCAAT+TGG - Chr1:93068380-93068399 MsG0180005544.01.T01:CDS 40.0%
CAAAGACCCTATGTATCTAG+AGG + Chr1:93069559-93069578 None:intergenic 40.0%
CAATACTTTCTTTCCGTGGT+CGG + Chr1:93071044-93071063 None:intergenic 40.0%
CAGAAACTCAGAGTTTCATC+CGG - Chr1:93068422-93068441 MsG0180005544.01.T01:CDS 40.0%
CAGGATTTCGTCTTCATATC+AGG - Chr1:93071249-93071268 MsG0180005544.01.T01:five_prime_UTR 40.0%
CCCTGAAAGGAAGAATGTTT+AGG + Chr1:93071090-93071109 None:intergenic 40.0%
CGAGCTATCCTTTCTTCTTT+AGG + Chr1:93069982-93070001 None:intergenic 40.0%
CTGATTTCACCAAGATCTCA+TGG - Chr1:93071647-93071666 MsG0180005544.01.T01:five_prime_UTR 40.0%
CTTTCTTAGGTACTTGAGGA+TGG - Chr1:93070841-93070860 MsG0180005544.01.T01:intron 40.0%
GAACCCATCAAGTATCATGA+TGG - Chr1:93070096-93070115 MsG0180005544.01.T01:intron 40.0%
GAGCCATCCCAAACTTTATT+AGG + Chr1:93071681-93071700 None:intergenic 40.0%
GAGGCAAACAATGACAATAG+AGG + Chr1:93069369-93069388 None:intergenic 40.0%
GATATGAAGACGAAATCCTG+AGG + Chr1:93071249-93071268 None:intergenic 40.0%
GATGATCAGAAACATCGGAT+CGG - Chr1:93068716-93068735 MsG0180005544.01.T01:CDS 40.0%
GCCATCCCAAACTTTATTAG+GGG + Chr1:93071679-93071698 None:intergenic 40.0%
GCCTAAACATTCTTCCTTTC+AGG - Chr1:93071086-93071105 MsG0180005544.01.T01:intron 40.0%
GGTTGTTCTGATGATTGGTA+AGG - Chr1:93069467-93069486 MsG0180005544.01.T01:intron 40.0%
TACAAGCCATACTTACAGAG+AGG + Chr1:93071721-93071740 None:intergenic 40.0%
TATCGGTCATTAGCAAAGCA+TGG + Chr1:93070227-93070246 None:intergenic 40.0%
TCCCCTAATAAAGTTTGGGA+TGG - Chr1:93071675-93071694 MsG0180005544.01.T01:five_prime_UTR 40.0%
TCTTAGGGGGGAATATAATC+TGG - Chr1:93068955-93068974 MsG0180005544.01.T01:five_prime_UTR 40.0%
TGCTCAATACTTTCTTTCCG+TGG + Chr1:93071048-93071067 None:intergenic 40.0%
TGGAAAATTGGTAGAGCTTG+TGG - Chr1:93068463-93068482 MsG0180005544.01.T01:CDS 40.0%
TGGCATTCTTTGATCCATCA+AGG - Chr1:93071223-93071242 MsG0180005544.01.T01:five_prime_UTR 40.0%
TTCAAGCAATGGCAAAGTTC+CGG - Chr1:93071540-93071559 MsG0180005544.01.T01:five_prime_UTR 40.0%
! ACTCTTTGAGAATGGCAACA+GGG + Chr1:93068781-93068800 None:intergenic 40.0%
! GTATTGTTGCTAGTGGATGA+AGG + Chr1:93068209-93068228 None:intergenic 40.0%
! GTGAAGCTTTATCATTGCCA+AGG - Chr1:93068516-93068535 MsG0180005544.01.T01:intron 40.0%
! TACTCTTTGAGAATGGCAAC+AGG + Chr1:93068782-93068801 None:intergenic 40.0%
! TCTACCAATTTTCCACCATC+CGG + Chr1:93068458-93068477 None:intergenic 40.0%
! TCTGAGTTTCTGATTGGTTC+TGG + Chr1:93068414-93068433 None:intergenic 40.0%
! TTCATCCGGTTTGATTGAAC+CGG - Chr1:93068436-93068455 MsG0180005544.01.T01:CDS 40.0%
!! AATTGCTACGTTGACTCTGA+TGG + Chr1:93068381-93068400 None:intergenic 40.0%
!! ATTGCTACGTTGACTCTGAT+GGG + Chr1:93068380-93068399 None:intergenic 40.0%
!! CGGAAAGAAAGTATTGAGCA+TGG - Chr1:93071048-93071067 MsG0180005544.01.T01:intron 40.0%
!! TGATGGGTTCTATAACCTCT+AGG + Chr1:93070086-93070105 None:intergenic 40.0%
!! TTTTGGAGAGAGAGTGAGAA+GGG + Chr1:93068335-93068354 None:intergenic 40.0%
!!! ACCCGTTATTTTTTGTGAGC+TGG - Chr1:93070640-93070659 MsG0180005544.01.T01:intron 40.0%
!!! GGAAAGAGGTTTTGGACAAA+AGG + Chr1:93068314-93068333 None:intergenic 40.0%
!!! GGCAGCTCTAACTGATTTTT+TGG + Chr1:93070760-93070779 None:intergenic 40.0%
AAAGGCTAGGATCAATGCTG+GGG - Chr1:93070947-93070966 MsG0180005544.01.T01:intron 45.0%
AACTCCGTGATGAGTTCACA+AGG - Chr1:93070148-93070167 MsG0180005544.01.T01:intron 45.0%
AAGAAAGGATAGCTCGGACT+TGG - Chr1:93069986-93070005 MsG0180005544.01.T01:intron 45.0%
AAGAGGGACATCATCAGCTT+TGG + Chr1:93070319-93070338 None:intergenic 45.0%
ACCATCCGGTTCAATCAAAC+CGG + Chr1:93068444-93068463 None:intergenic 45.0%
AGAAAGGATAGCTCGGACTT+GGG - Chr1:93069987-93070006 MsG0180005544.01.T01:intron 45.0%
AGAAGGGAAACGTGCATATG+TGG + Chr1:93070457-93070476 None:intergenic 45.0%
AGTGGATGAAGCAAGAGGAT+CGG + Chr1:93070285-93070304 None:intergenic 45.0%
AGTGGATGAAGGAGGGTAAA+AGG + Chr1:93068198-93068217 None:intergenic 45.0%
ATACAACACTAGACCGGAAC+AGG + Chr1:93071568-93071587 None:intergenic 45.0%
ATCCTCTTGCTTCATCCACT+TGG - Chr1:93070285-93070304 MsG0180005544.01.T01:intron 45.0%
ATGGACACAACTGTTGTCTC+TGG + Chr1:93070877-93070896 None:intergenic 45.0%
CAAAGGCTAGGATCAATGCT+GGG - Chr1:93070946-93070965 MsG0180005544.01.T01:intron 45.0%
CCATACTTACAGAGAGGCAA+TGG + Chr1:93071715-93071734 None:intergenic 45.0%
CCATTGCCTCTCTGTAAGTA+TGG - Chr1:93071712-93071731 MsG0180005544.01.T01:five_prime_UTR 45.0%
CGTCTTCATATCAGGCACAA+AGG - Chr1:93071257-93071276 MsG0180005544.01.T01:five_prime_UTR 45.0%
CTCTCATGAAACCACCAAGT+GGG + Chr1:93068601-93068620 None:intergenic 45.0%
GCTGCTTATGACAAGACTCA+GGG - Chr1:93071195-93071214 MsG0180005544.01.T01:five_prime_UTR 45.0%
GCTGGAAATTGGTTGATTGG+TGG - Chr1:93070057-93070076 MsG0180005544.01.T01:intron 45.0%
GGTGAAATCAGTGTCTTAGC+AGG + Chr1:93071638-93071657 None:intergenic 45.0%
GTCAGCATCAGTGTCATGTT+TGG + Chr1:93071354-93071373 None:intergenic 45.0%
GTGGATGAAGGAGGGTAAAA+GGG + Chr1:93068197-93068216 None:intergenic 45.0%
TAGTTTCTTCGGCATAAGGC+AGG + Chr1:93070029-93070048 None:intergenic 45.0%
TCCTCTTGCTTCATCCACTT+GGG - Chr1:93070286-93070305 MsG0180005544.01.T01:intron 45.0%
TCTCATGAAACCACCAAGTG+GGG + Chr1:93068600-93068619 None:intergenic 45.0%
TCTCTCATGAAACCACCAAG+TGG + Chr1:93068602-93068621 None:intergenic 45.0%
TGACAAGACTCAGGGTAAGA+TGG - Chr1:93071203-93071222 MsG0180005544.01.T01:five_prime_UTR 45.0%
TTAGCAAAGCATGGCCATTG+TGG + Chr1:93070218-93070237 None:intergenic 45.0%
TTTGGACAAAAGGGTAGCCA+TGG + Chr1:93068304-93068323 None:intergenic 45.0%
! AACAAGTTGAGCCAAACCAC+CGG - Chr1:93069037-93069056 MsG0180005544.01.T01:five_prime_UTR 45.0%
! AACTCATCACGGAGTTCTGA+AGG + Chr1:93070144-93070163 None:intergenic 45.0%
! CTGATGATGTCCCTCTTGAT+TGG - Chr1:93070322-93070341 MsG0180005544.01.T01:intron 45.0%
! GTGAGAAGGGAAAGAGGTTT+TGG + Chr1:93068322-93068341 None:intergenic 45.0%
! TGCTGCTTATGACAAGACTC+AGG - Chr1:93071194-93071213 MsG0180005544.01.T01:five_prime_UTR 45.0%
! TGTTGCTAGTGGATGAAGGA+GGG + Chr1:93068205-93068224 None:intergenic 45.0%
! TTGTTGCTAGTGGATGAAGG+AGG + Chr1:93068206-93068225 None:intergenic 45.0%
!! AAAGTATTGAGCATGGCACC+TGG - Chr1:93071055-93071074 MsG0180005544.01.T01:intron 45.0%
!! ACTCATCACGGAGTTCTGAA+GGG + Chr1:93070143-93070162 None:intergenic 45.0%
!! TGAACCGGATGGTGGAAAAT+TGG - Chr1:93068451-93068470 MsG0180005544.01.T01:CDS 45.0%
!! TGGTTTGGCTCAACTTGTTG+AGG + Chr1:93069036-93069055 None:intergenic 45.0%
!!! GTTTTGGAGAGAGAGTGAGA+AGG + Chr1:93068336-93068355 None:intergenic 45.0%
!! GAATAAAAATAAAATAAAAA+AGG + Chr1:93069391-93069410 None:intergenic 5.0%
AAAGCATGGCCATTGTGGAC+AGG + Chr1:93070213-93070232 None:intergenic 50.0%
ACGAAATCCTGAGGCCTTGA+TGG + Chr1:93071240-93071259 None:intergenic 50.0%
AGTGGTCCAGCATAGTGCAT+GGG + Chr1:93070910-93070929 None:intergenic 50.0%
CAAAGTTCCGGAACCTGTTC+CGG - Chr1:93071552-93071571 MsG0180005544.01.T01:five_prime_UTR 50.0%
CACACCTTCAATGGCTTCCA+TGG - Chr1:93068284-93068303 MsG0180005544.01.T01:three_prime_UTR 50.0%
CATATCAAGAAGCCGCTTGC+GGG + Chr1:93070250-93070269 None:intergenic 50.0%
CATGGAAGCCATTGAAGGTG+TGG + Chr1:93068286-93068305 None:intergenic 50.0%
CCAGGGCACATAAATCCATC+AGG + Chr1:93071478-93071497 None:intergenic 50.0%
CCATATCAAGAAGCCGCTTG+CGG + Chr1:93070251-93070270 None:intergenic 50.0%
CCTCTTGCTTCATCCACTTG+GGG - Chr1:93070287-93070306 MsG0180005544.01.T01:intron 50.0%
CGCAAGCGGCTTCTTGATAT+GGG - Chr1:93070249-93070268 MsG0180005544.01.T01:intron 50.0%
CTCTTGCTTCATCCACTTGG+GGG - Chr1:93070288-93070307 MsG0180005544.01.T01:intron 50.0%
CTGGAACGCAAACACAGCAT+CGG + Chr1:93070181-93070200 None:intergenic 50.0%
CTTTGATCCATCAAGGCCTC+AGG - Chr1:93071230-93071249 MsG0180005544.01.T01:five_prime_UTR 50.0%
GAAAGGATAGCTCGGACTTG+GGG - Chr1:93069988-93070007 MsG0180005544.01.T01:intron 50.0%
GAGAGAGTGAGAAGGGAAAG+AGG + Chr1:93068328-93068347 None:intergenic 50.0%
GATCTGTATGATGCCGACCA+CGG - Chr1:93071028-93071047 MsG0180005544.01.T01:intron 50.0%
GCAAAGGCTAGGATCAATGC+TGG - Chr1:93070945-93070964 MsG0180005544.01.T01:intron 50.0%
GGGATTAGGCCATGAGATCT+TGG + Chr1:93071659-93071678 None:intergenic 50.0%
GGGCACATAAATCCATCAGG+AGG + Chr1:93071475-93071494 None:intergenic 50.0%
GGGTTCATGTGCTGAGTGAA+GGG - Chr1:93068567-93068586 MsG0180005544.01.T01:intron 50.0%
GGTGGCACTATAACTGCAAG+AGG + Chr1:93071750-93071769 None:intergenic 50.0%
GGTTTGATTGAACCGGATGG+TGG - Chr1:93068443-93068462 MsG0180005544.01.T01:CDS 50.0%
GTAGCCATGGAAGCCATTGA+AGG + Chr1:93068291-93068310 None:intergenic 50.0%
TAATGACCGATACCCGCAAG+CGG - Chr1:93070235-93070254 MsG0180005544.01.T01:intron 50.0%
TCAGTTAGAGCTGCCCCATA+TGG - Chr1:93070765-93070784 MsG0180005544.01.T01:intron 50.0%
TCATGTGCTGAGTGAAGGGT+GGG - Chr1:93068571-93068590 MsG0180005544.01.T01:intron 50.0%
TGCGCCTTGTGAACTCATCA+CGG + Chr1:93070155-93070174 None:intergenic 50.0%
TGGGTTCATGTGCTGAGTGA+AGG - Chr1:93068566-93068585 MsG0180005544.01.T01:intron 50.0%
TTCAGCCACCACACCTTCAA+TGG - Chr1:93068275-93068294 MsG0180005544.01.T01:three_prime_UTR 50.0%
TTCATGTGCTGAGTGAAGGG+TGG - Chr1:93068570-93068589 MsG0180005544.01.T01:intron 50.0%
! ACAAGTTGAGCCAAACCACC+GGG - Chr1:93069038-93069057 MsG0180005544.01.T01:five_prime_UTR 50.0%
! GATGGATTTATGTGCCCTGG+TGG - Chr1:93071478-93071497 MsG0180005544.01.T01:five_prime_UTR 50.0%
! TCCGGTTTGATTGAACCGGA+TGG - Chr1:93068440-93068459 MsG0180005544.01.T01:CDS 50.0%
!! CCTGATGGATTTATGTGCCC+TGG - Chr1:93071475-93071494 MsG0180005544.01.T01:five_prime_UTR 50.0%
!! CTACGTTGACTCTGATGGGA+GGG + Chr1:93068376-93068395 None:intergenic 50.0%
!! CTCATCACGGAGTTCTGAAG+GGG + Chr1:93070142-93070161 None:intergenic 50.0%
!! GTTGATTGGTGGTGACCTAG+AGG - Chr1:93070068-93070087 MsG0180005544.01.T01:intron 50.0%
!! TACGTTGACTCTGATGGGAG+GGG + Chr1:93068375-93068394 None:intergenic 50.0%
AAACCACCGGGCAAGTGGTT+GGG - Chr1:93069050-93069069 MsG0180005544.01.T01:five_prime_UTR 55.0%
AAACCTCCCAACCACTTGCC+CGG + Chr1:93069059-93069078 None:intergenic 55.0%
AAGAAGCCGCTTGCGGGTAT+CGG + Chr1:93070244-93070263 None:intergenic 55.0%
ACTCTGATGGGAGGGGCAAA+TGG + Chr1:93068368-93068387 None:intergenic 55.0%
ACTTGGGGAACAACTGCTCC+CGG - Chr1:93070003-93070022 MsG0180005544.01.T01:intron 55.0%
ATGTTTAGGCGCTCGAGTCC+AGG + Chr1:93071076-93071095 None:intergenic 55.0%
CACTAGACCGGAACAGGTTC+CGG + Chr1:93071562-93071581 None:intergenic 55.0%
CAGCATAGTGCATGGGAGAC+GGG + Chr1:93070903-93070922 None:intergenic 55.0%
CAGTGGTCCAGCATAGTGCA+TGG + Chr1:93070911-93070930 None:intergenic 55.0%
CCAGCATAGTGCATGGGAGA+CGG + Chr1:93070904-93070923 None:intergenic 55.0%
CCCCAAGTGGATGAAGCAAG+AGG + Chr1:93070290-93070309 None:intergenic 55.0%
CCGCAAGCGGCTTCTTGATA+TGG - Chr1:93070248-93070267 MsG0180005544.01.T01:intron 55.0%
CTCCGGAATCCTGTCCACAA+TGG - Chr1:93070201-93070220 MsG0180005544.01.T01:intron 55.0%
CTCTGATGGGAGGGGCAAAT+GGG + Chr1:93068367-93068386 None:intergenic 55.0%
CTGTGTTTGCGTTCCAGCTC+CGG - Chr1:93070184-93070203 MsG0180005544.01.T01:intron 55.0%
GATTTATGTGCCCTGGTGGC+TGG - Chr1:93071482-93071501 MsG0180005544.01.T01:five_prime_UTR 55.0%
GCTTTGGTATAGCCCCCAAG+TGG + Chr1:93070303-93070322 None:intergenic 55.0%
GGCCATTGTGGACAGGATTC+CGG + Chr1:93070206-93070225 None:intergenic 55.0%
GTGCATGGGAGACGGGAATA+TGG + Chr1:93070896-93070915 None:intergenic 55.0%
TGAGGTGCAGTGGCATGCAA+AGG - Chr1:93070929-93070948 MsG0180005544.01.T01:intron 55.0%
TGCACTATGCTGGACCACTG+AGG - Chr1:93070911-93070930 MsG0180005544.01.T01:intron 55.0%
TGCAGATGCGGACACTTGCT+AGG - Chr1:93071437-93071456 MsG0180005544.01.T01:five_prime_UTR 55.0%
TGCAGTGGCATGCAAAGGCT+AGG - Chr1:93070934-93070953 MsG0180005544.01.T01:intron 55.0%
TTCTTCGGCATAAGGCAGGC+CGG + Chr1:93070025-93070044 None:intergenic 55.0%
! GGAAGCCATTGAAGGTGTGG+TGG + Chr1:93068283-93068302 None:intergenic 55.0%
!! GCTACGTTGACTCTGATGGG+AGG + Chr1:93068377-93068396 None:intergenic 55.0%
ACTAGCACCTTCCAGCCACC+AGG + Chr1:93071496-93071515 None:intergenic 60.0%
CAAACCACCGGGCAAGTGGT+TGG - Chr1:93069049-93069068 MsG0180005544.01.T01:five_prime_UTR 60.0%
CAACCACTTGCCCGGTGGTT+TGG + Chr1:93069051-93069070 None:intergenic 60.0%
CATTGTCGTCGAGACCCTGC+AGG - Chr1:93070980-93070999 MsG0180005544.01.T01:intron 60.0%
CCGTCTCCCATGCACTATGC+TGG - Chr1:93070901-93070920 MsG0180005544.01.T01:intron 60.0%
CTAGCACCTTCCAGCCACCA+GGG + Chr1:93071495-93071514 None:intergenic 60.0%
TATGTGCCCTGGTGGCTGGA+AGG - Chr1:93071486-93071505 MsG0180005544.01.T01:five_prime_UTR 60.0%
TCTTCGGCATAAGGCAGGCC+GGG + Chr1:93070024-93070043 None:intergenic 60.0%
TGCATGCCACTGCACCTCAG+TGG + Chr1:93070928-93070947 None:intergenic 60.0%
TGTGGACAGGATTCCGGAGC+TGG + Chr1:93070200-93070219 None:intergenic 60.0%
ACAGGATGGCCCATGCCTGC+AGG + Chr1:93070998-93071017 None:intergenic 65.0%
CAGGATGGCCCATGCCTGCA+GGG + Chr1:93070997-93071016 None:intergenic 65.0%
CGTCGAGACCCTGCAGGCAT+GGG - Chr1:93070986-93071005 MsG0180005544.01.T01:intron 65.0%
GAGCCAAACCACCGGGCAAG+TGG - Chr1:93069045-93069064 MsG0180005544.01.T01:five_prime_UTR 65.0%
GCTGGACCACTGAGGTGCAG+TGG - Chr1:93070919-93070938 MsG0180005544.01.T01:intron 65.0%
TCGTCGAGACCCTGCAGGCA+TGG - Chr1:93070985-93071004 MsG0180005544.01.T01:intron 65.0%
!! GAAGGGTGGGCTACCCCACT+TGG - Chr1:93068584-93068603 MsG0180005544.01.T01:intron 65.0%
CCACCGGGCAAGTGGTTGGG+AGG - Chr1:93069053-93069072 MsG0180005544.01.T01:five_prime_UTR 70.0%
CCTCCCAACCACTTGCCCGG+TGG + Chr1:93069056-93069075 None:intergenic 70.0%
!! GGGTGGGCTACCCCACTTGG+TGG - Chr1:93068587-93068606 MsG0180005544.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93068083 93071861 93068083 ID=MsG0180005544.01;Name=MsG0180005544.01
Chr1 mRNA 93068083 93071861 93068083 ID=MsG0180005544.01.T01;Parent=MsG0180005544.01;Name=MsG0180005544.01.T01;_AED=0.49;_eAED=0.49;_QI=1276|1|1|1|0.75|0.8|5|282|109
Chr1 exon 93068083 93068502 93068083 ID=MsG0180005544.01.T01:exon:19049;Parent=MsG0180005544.01.T01
Chr1 exon 93068666 93068752 93068666 ID=MsG0180005544.01.T01:exon:19048;Parent=MsG0180005544.01.T01
Chr1 exon 93068836 93069094 93068836 ID=MsG0180005544.01.T01:exon:19047;Parent=MsG0180005544.01.T01
Chr1 exon 93069579 93069984 93069579 ID=MsG0180005544.01.T01:exon:19046;Parent=MsG0180005544.01.T01
Chr1 five_prime_UTR 93071146 93071861 93071146 ID=MsG0180005544.01.T01:five_prime_utr;Parent=MsG0180005544.01.T01
Chr1 five_prime_UTR 93069579 93069984 93069579 ID=MsG0180005544.01.T01:five_prime_utr;Parent=MsG0180005544.01.T01
Chr1 five_prime_UTR 93068941 93069094 93068941 ID=MsG0180005544.01.T01:five_prime_utr;Parent=MsG0180005544.01.T01
Chr1 CDS 93068836 93068940 93068836 ID=MsG0180005544.01.T01:cds;Parent=MsG0180005544.01.T01
Chr1 CDS 93068666 93068752 93068666 ID=MsG0180005544.01.T01:cds;Parent=MsG0180005544.01.T01
Chr1 CDS 93068365 93068502 93068365 ID=MsG0180005544.01.T01:cds;Parent=MsG0180005544.01.T01
Chr1 three_prime_UTR 93068083 93068364 93068083 ID=MsG0180005544.01.T01:three_prime_utr;Parent=MsG0180005544.01.T01
Chr1 mRNA 93069555 93071861 93069555 ID=MsG0180005544.01.T02;Parent=MsG0180005544.01;Name=MsG0180005544.01.T02;_AED=0.50;_eAED=0.50;_QI=531|1|0.5|1|1|1|2|0|204
Chr1 exon 93069555 93069984 93069555 ID=MsG0180005544.01.T02:exon:19050;Parent=MsG0180005544.01.T02
Chr1 five_prime_UTR 93071331 93071861 93071331 ID=MsG0180005544.01.T02:five_prime_utr;Parent=MsG0180005544.01.T02
Chr1 CDS 93071146 93071330 93071146 ID=MsG0180005544.01.T02:cds;Parent=MsG0180005544.01.T02
Chr1 CDS 93069555 93069984 93069555 ID=MsG0180005544.01.T02:cds;Parent=MsG0180005544.01.T02
Gene Sequence

>MsG0180005544.01.T01

ATGGGCCATCCTGTTGAAAAAAGAGATCTGTATGATGCCGACCACGGAAAGAAAGTATTGAGCATGGCACCTGGACTCGAGCGCCTAAACATTCTTCCTTTCAGGGTTGCTGCTTATGACAAGACTCAGGGTAAGATGGCATTCTTTGATCCATCAAGGCCTCAGGATTTCGTCTTCATATCAGGCACAAAGATGCGGACACTTGCTAGGAACAAAGAAAGTCCTCCTGATGGATTTATGTGCCCTGGTGGCTGGAAGGTGCTAGTTGACTATTATGATAGTTTAGTGCTTTCAAGCAATGGCAAAGTTCCGGAACCTGTTCCGGTCTAG

>MsG0180005544.01.T02

ATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAGACTCAATGATGGGTCTTTTGTGAATATGTCTGTTCCGATTGTTTTGGCTATTGATGATGATCAGAAACATCGGATCGGTGAATCTACAAAAGTTGCTCTTTTTGATTCTAAGGGTAACCCTGTTGCCATTCTCAAAGATATCGAAATTTATAAGCATCCTAAAGAAGAAAGGATAGCTCGGACTTGGGGAACAACTGCTCCCGGCCTGCCTTATGCCGAAGAAACTATAACTAATGCTGGAAATTGGTTGATTGGTGGTGACCTAGAGGTTATAGAACCCATCAAGTATCATGATGGGCTTGATCATTTTCGTCTGTCCCCTTCAGAACTCCGTGATGAGTTCACAAGGCGCAATGCCGATGCTGTGTTTGCGTTCCAGCTCCGGAATCCTGTCCACAATGGCCATGCTTTGCTAATGACCGATACCCGCAAGCGGCTTCTTGATATGGGTTACAAGAATCCGATCCTCTTGCTTCATCCACTTGGGGGCTATACCAAAGCTGATGATGTCCCTCTTGATTGGAGAATGAAACAACATGAGAAGGTATGTGCACTAGTGAATATGTGA
Protein sequence

>MsG0180005544.01.T01

MGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFVFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSLVLSSNGKVPEPVPV*

>MsG0180005544.01.T02

MREREFLQTLHFNSLRLNDGSFVNMSVPIVLAIDDDQKHRIGESTKVALFDSKGNPVAILKDIEIYKHPKEERIARTWGTTAPGLPYAEETITNAGNWLIGGDLEVIEPIKYHDGLDHFRLSPSELRDEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLDMGYKNPILLLHPLGGYTKADDVPLDWRMKQHEKVCALVNM*