AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004548.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004548.01.T01 MTR_1g082380 89.820 167 5 2 1 158 1 164 2.50e-102 304
MsG0180004548.01.T01 MTR_1g082380 89.820 167 5 2 1 158 1 164 1.56e-101 303
MsG0180004548.01.T01 MTR_1g082370 62.500 136 19 4 308 413 19 152 1.22e-38 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004548.01.T01 AT5G27395 43.605 172 80 5 1 158 1 169 3.81e-34 129
MsG0180004548.01.T01 AT5G27395 53.043 115 51 2 45 158 74 186 1.60e-33 128

Find 0 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATTAATTTAATTT+GGG - Chr1:79465693-79465712 MsG0180004548.01.T01:CDS 0.0%
!!! TTTTTTTTTTTTTTTTAATT+TGG - Chr1:79465811-79465830 MsG0180004548.01.T01:intron 0.0%
!! AAAAAAAAAAAGTAAAATAC+GGG + Chr1:79465799-79465818 None:intergenic 10.0%
!! AATTTACTTAATAAAATTTG+TGG - Chr1:79466258-79466277 MsG0180004548.01.T01:intron 10.0%
!! TCTATTAAAGAATATTATAA+TGG + Chr1:79464296-79464315 None:intergenic 10.0%
!!! AAAAAAACGATTTTTAAAAT+AGG + Chr1:79465772-79465791 None:intergenic 10.0%
!!! AAAAAACGATTTTTAAAATA+GGG + Chr1:79465771-79465790 None:intergenic 10.0%
!!! AATTTATATTTAATTTCTTG+TGG - Chr1:79468024-79468043 MsG0180004548.01.T01:CDS 10.0%
!!! ATATATTTTATCTATGATTT+TGG + Chr1:79463437-79463456 None:intergenic 10.0%
!!! ATTATTTTAATCATTGATTA+AGG - Chr1:79463778-79463797 MsG0180004548.01.T01:intron 10.0%
!!! ATTGAAAATATAAGTTTTTA+AGG - Chr1:79468591-79468610 MsG0180004548.01.T01:intron 10.0%
!!! TATATTTTATCTATGATTTT+GGG + Chr1:79463436-79463455 None:intergenic 10.0%
!!! TATTTTAAAAATCGTTTTTT+TGG - Chr1:79465771-79465790 MsG0180004548.01.T01:intron 10.0%
!!! TTTTCTATATTATTGTTTTA+TGG - Chr1:79467267-79467286 MsG0180004548.01.T01:CDS 10.0%
!!! TTTTTTTGACAATATATTAA+AGG - Chr1:79463349-79463368 MsG0180004548.01.T01:intron 10.0%
!! AAAAAAAAAAGTAAAATACG+GGG + Chr1:79465798-79465817 None:intergenic 15.0%
!! AAATATACCAACAAAATAAT+TGG + Chr1:79463882-79463901 None:intergenic 15.0%
!! ATAGATATTAAAAATCTTTG+TGG + Chr1:79469116-79469135 None:intergenic 15.0%
!! GTTTAGAAAAAATCAAATAT+AGG - Chr1:79468432-79468451 MsG0180004548.01.T01:intron 15.0%
!! TAAAAAGCAAGAATATAAAA+AGG + Chr1:79469017-79469036 None:intergenic 15.0%
!! TAAAACAATAAAATCAATCT+AGG - Chr1:79464328-79464347 MsG0180004548.01.T01:intron 15.0%
!! TAAATAAAGAAATTTAACCT+TGG + Chr1:79468634-79468653 None:intergenic 15.0%
!! TTTCATTCAAAAACAAAATT+TGG + Chr1:79468469-79468488 None:intergenic 15.0%
!!! AAAAACGATTTTTAAAATAG+GGG + Chr1:79465770-79465789 None:intergenic 15.0%
!!! AATTATGATTTTTTTGCTTT+TGG - Chr1:79462785-79462804 MsG0180004548.01.T01:intron 15.0%
!!! ATGGAGTATTTTTTTTTTTT+AGG + Chr1:79464581-79464600 None:intergenic 15.0%
!!! ATTATGATTTTTTTGCTTTT+GGG - Chr1:79462786-79462805 MsG0180004548.01.T01:intron 15.0%
!!! ATTCTGAAAAAAAGTAAAAT+AGG - Chr1:79466010-79466029 MsG0180004548.01.T01:intron 15.0%
!!! GTTTTCATAAATTATCTTAA+AGG + Chr1:79463046-79463065 None:intergenic 15.0%
!!! TATTTTCAAATTATGTAATG+TGG + Chr1:79467239-79467258 None:intergenic 15.0%
!!! TTCTGAAAAAAAGTAAAATA+GGG - Chr1:79466011-79466030 MsG0180004548.01.T01:intron 15.0%
!!! TTCTTTTTGATCTTTTTATT+TGG + Chr1:79469574-79469593 None:intergenic 15.0%
!!! TTTACTTTTTTTCAGAATTT+TGG + Chr1:79466008-79466027 None:intergenic 15.0%
!! AAAAACAATTGTTACATAAG+AGG + Chr1:79464273-79464292 None:intergenic 20.0%
!! AAAACAATTGTTACATAAGA+GGG + Chr1:79464272-79464291 None:intergenic 20.0%
!! AAACAAAACTCTGATAATTA+TGG + Chr1:79466612-79466631 None:intergenic 20.0%
!! AACTATTATGAAAGATTTAG+AGG - Chr1:79467859-79467878 MsG0180004548.01.T01:intron 20.0%
!! AATCCAATTCTCAATTTAAA+AGG - Chr1:79469708-79469727 MsG0180004548.01.T01:intron 20.0%
!! ACATTATTGAAATCAAAACT+AGG - Chr1:79465512-79465531 MsG0180004548.01.T01:intron 20.0%
!! ATGAATATAGAATACAAGAA+GGG + Chr1:79463856-79463875 None:intergenic 20.0%
!! ATGATCCTATATATATGAAT+TGG - Chr1:79467100-79467119 MsG0180004548.01.T01:intron 20.0%
!! ATTTGTAAGGAGAATAAAAA+AGG + Chr1:79468697-79468716 None:intergenic 20.0%
!! CAATACAATAACTACAAATT+GGG + Chr1:79463195-79463214 None:intergenic 20.0%
!! CATTATTGAAATCAAAACTA+GGG - Chr1:79465513-79465532 MsG0180004548.01.T01:intron 20.0%
!! CTATTAATTAGAAAATTACG+AGG - Chr1:79465486-79465505 MsG0180004548.01.T01:intron 20.0%
!! GGGATACATATTTAATATAA+TGG - Chr1:79467037-79467056 MsG0180004548.01.T01:intron 20.0%
!! GGTTGAGAAATAATTTATAT+TGG + Chr1:79468136-79468155 None:intergenic 20.0%
!! GTATGGAATACAAAATTTAA+CGG + Chr1:79465301-79465320 None:intergenic 20.0%
!! TAATAATTGAATAGTAAACG+TGG - Chr1:79468774-79468793 MsG0180004548.01.T01:intron 20.0%
!! TATGAATATAGAATACAAGA+AGG + Chr1:79463857-79463876 None:intergenic 20.0%
!! TCTATTTCATAGAATAATTG+TGG + Chr1:79468002-79468021 None:intergenic 20.0%
!! TCTGAAAAAAAGTAAAATAG+GGG - Chr1:79466012-79466031 MsG0180004548.01.T01:intron 20.0%
!! TGAGAAATAATTTATATTGG+TGG + Chr1:79468133-79468152 None:intergenic 20.0%
!! TGTAAATTGTGTTATATGAA+TGG + Chr1:79463688-79463707 None:intergenic 20.0%
!! TTACTGAAAATTTATATCCT+TGG - Chr1:79467405-79467424 MsG0180004548.01.T01:intron 20.0%
!! TTCAAAAACAAAATTTGGAT+AGG + Chr1:79468464-79468483 None:intergenic 20.0%
!! TTGGATTAATGAAATTTACA+AGG - Chr1:79463212-79463231 MsG0180004548.01.T01:intron 20.0%
!! TTTGTAAGGAGAATAAAAAA+GGG + Chr1:79468696-79468715 None:intergenic 20.0%
!!! AAAACGATTTTTAAAATAGG+GGG + Chr1:79465769-79465788 None:intergenic 20.0%
!!! AAATAAATGGTCTATCTTTT+GGG + Chr1:79465646-79465665 None:intergenic 20.0%
!!! AACATTTTTATGAAAATAGG+GGG - Chr1:79466043-79466062 MsG0180004548.01.T01:intron 20.0%
!!! ACCAACATTTTTATGAAAAT+AGG - Chr1:79466040-79466059 MsG0180004548.01.T01:intron 20.0%
!!! ATTTTCATAAAAATGTTGGT+TGG + Chr1:79466040-79466059 None:intergenic 20.0%
!!! CAACATTTTTATGAAAATAG+GGG - Chr1:79466042-79466061 MsG0180004548.01.T01:intron 20.0%
!!! CCAACATTTTTATGAAAATA+GGG - Chr1:79466041-79466060 MsG0180004548.01.T01:intron 20.0%
!!! CTTCTTTTTGATCTTTTTAT+TGG + Chr1:79469575-79469594 None:intergenic 20.0%
!!! GCTGTTTTTTAATTCTTTAT+AGG - Chr1:79466335-79466354 MsG0180004548.01.T01:intron 20.0%
!!! GTATATTTGAATTGATTTAC+TGG - Chr1:79463894-79463913 MsG0180004548.01.T01:intron 20.0%
!!! TAAATAAATGGTCTATCTTT+TGG + Chr1:79465647-79465666 None:intergenic 20.0%
!!! TAAGTTTTCATATCTTTTGT+GGG - Chr1:79464632-79464651 MsG0180004548.01.T01:intron 20.0%
!!! TATACAACTACCATAAATTT+TGG + Chr1:79468319-79468338 None:intergenic 20.0%
!!! TATCCTTTTAAATTGAGAAT+TGG + Chr1:79469714-79469733 None:intergenic 20.0%
!!! TCATATACCAATTATTTTGT+TGG - Chr1:79463872-79463891 MsG0180004548.01.T01:intron 20.0%
!!! TGTGCTTTATTTGATATTTT+AGG - Chr1:79466761-79466780 MsG0180004548.01.T01:intron 20.0%
!!! TTAAGTTTTCATATCTTTTG+TGG - Chr1:79464631-79464650 MsG0180004548.01.T01:intron 20.0%
!!! TTATGAAAACAACTTTTGAT+GGG - Chr1:79463056-79463075 MsG0180004548.01.T01:intron 20.0%
!!! TTATGATTTTTTTGCTTTTG+GGG - Chr1:79462787-79462806 MsG0180004548.01.T01:intron 20.0%
!!! TTATTTTACTCTTCAATTAG+AGG - Chr1:79463986-79464005 MsG0180004548.01.T01:intron 20.0%
!!! TTTATGAAAACAACTTTTGA+TGG - Chr1:79463055-79463074 MsG0180004548.01.T01:intron 20.0%
!!! TTTTAAATTGAGAATTGGAT+TGG + Chr1:79469709-79469728 None:intergenic 20.0%
!!! TTTTTGAAGTTAATCTCATA+TGG - Chr1:79466965-79466984 MsG0180004548.01.T01:intron 20.0%
! AAAGAAGAGACCAAAATTTA+TGG - Chr1:79468306-79468325 MsG0180004548.01.T01:intron 25.0%
! AAGGCATGAAAATTAATACT+TGG + Chr1:79464383-79464402 None:intergenic 25.0%
! AATAACATCCATAGAAGAAA+GGG + Chr1:79465141-79465160 None:intergenic 25.0%
! AATTTATGACTACCAATTGT+TGG - Chr1:79463394-79463413 MsG0180004548.01.T01:intron 25.0%
! ACATAGTTAGGTTTCAAAAT+TGG + Chr1:79464943-79464962 None:intergenic 25.0%
! ACTGACATATCATTATTTCA+GGG - Chr1:79464403-79464422 MsG0180004548.01.T01:intron 25.0%
! AGTCAGAATATAAATTCGAA+TGG - Chr1:79463612-79463631 MsG0180004548.01.T01:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - Chr1:79463145-79463164 MsG0180004548.01.T01:CDS 25.0%
! ATCTAATGCATTATGCTAAT+TGG + Chr1:79467617-79467636 None:intergenic 25.0%
! ATGAGTCAAAAAATAAAGCT+TGG + Chr1:79465323-79465342 None:intergenic 25.0%
! ATGATACTATTCAATCCAAT+CGG + Chr1:79466895-79466914 None:intergenic 25.0%
! ATGGTTTAAGGAGATATTAA+AGG - Chr1:79463320-79463339 MsG0180004548.01.T01:intron 25.0%
! ATTAAATATGTATCCCAGAA+AGG + Chr1:79467033-79467052 None:intergenic 25.0%
! CATACATAAAGAGATTTGTA+AGG + Chr1:79468710-79468729 None:intergenic 25.0%
! CATAGTTAGGTTTCAAAATT+GGG + Chr1:79464942-79464961 None:intergenic 25.0%
! CCAATACAATAACTACAAAT+TGG + Chr1:79463196-79463215 None:intergenic 25.0%
! CCAATTTGTAGTTATTGTAT+TGG - Chr1:79463193-79463212 MsG0180004548.01.T01:intron 25.0%
! CTGAAAAAAAGTAAAATAGG+GGG - Chr1:79466013-79466032 MsG0180004548.01.T01:intron 25.0%
! CTTTCTATCATTCATGAAAA+TGG + Chr1:79462871-79462890 None:intergenic 25.0%
! GAAATAATGATATGTCAGTA+AGG + Chr1:79464402-79464421 None:intergenic 25.0%
! GAATCATGTATAACACTATA+TGG + Chr1:79464600-79464619 None:intergenic 25.0%
! GCAAAAATATGTCTAATAAG+CGG - Chr1:79465923-79465942 MsG0180004548.01.T01:intron 25.0%
! GTTATTACATAGACATAGTT+AGG + Chr1:79464955-79464974 None:intergenic 25.0%
! TAATAGCGTAAATTAGTAAC+AGG + Chr1:79465472-79465491 None:intergenic 25.0%
! TACTGACATATCATTATTTC+AGG - Chr1:79464402-79464421 MsG0180004548.01.T01:intron 25.0%
! TAGAAAAGATGGTAGAAAAT+AGG - Chr1:79467738-79467757 MsG0180004548.01.T01:intron 25.0%
! TAGCATTTCCATAAAAGAAA+GGG + Chr1:79468510-79468529 None:intergenic 25.0%
! TATATATAGGATCATCATCA+TGG + Chr1:79467095-79467114 None:intergenic 25.0%
! TCAAAAAATAAAGCTTGGTA+TGG + Chr1:79465318-79465337 None:intergenic 25.0%
! TCAATCTAGAGGTAAATAAA+TGG + Chr1:79465659-79465678 None:intergenic 25.0%
! TCGTATTTCATATACACATT+TGG + Chr1:79466805-79466824 None:intergenic 25.0%
! TCTAGCCAATTCATATATAT+AGG + Chr1:79467108-79467127 None:intergenic 25.0%
! TCTATGATGTTTCATATATC+AGG - Chr1:79464822-79464841 MsG0180004548.01.T01:CDS 25.0%
! TCTCAAATATCCATATATCA+CGG + Chr1:79468214-79468233 None:intergenic 25.0%
! TCTTTCATAATAGTTTCTCT+AGG + Chr1:79467854-79467873 None:intergenic 25.0%
! TGATATATGGATATTTGAGA+AGG - Chr1:79468214-79468233 MsG0180004548.01.T01:intron 25.0%
! TTAAAGTAAGAGAAACTACA+TGG - Chr1:79466656-79466675 MsG0180004548.01.T01:intron 25.0%
! TTAGCATTTCCATAAAAGAA+AGG + Chr1:79468511-79468530 None:intergenic 25.0%
! TTATTTCATCACTAAAACTC+TGG - Chr1:79469301-79469320 MsG0180004548.01.T01:intron 25.0%
! TTATTTGTGAAACGAATTGT+GGG + Chr1:79468831-79468850 None:intergenic 25.0%
! TTCTTACTAGTTATGGTTTA+AGG - Chr1:79463308-79463327 MsG0180004548.01.T01:intron 25.0%
! TTTATTTGTGAAACGAATTG+TGG + Chr1:79468832-79468851 None:intergenic 25.0%
!! AAGGAAAGGAAATTTTATCA+TGG + Chr1:79466438-79466457 None:intergenic 25.0%
!! ACATTTTTATGAAAATAGGG+GGG - Chr1:79466044-79466063 MsG0180004548.01.T01:intron 25.0%
!! ATCAAGCTTAAAACTTTTTG+CGG - Chr1:79468907-79468926 MsG0180004548.01.T01:intron 25.0%
!! ATTTGCTTCATTTTGTTCTT+TGG - Chr1:79466305-79466324 MsG0180004548.01.T01:intron 25.0%
!! CAAAAAGCAAAAATTGATTC+AGG + Chr1:79465169-79465188 None:intergenic 25.0%
!! CCCTATTTTCATAAAAATGT+TGG + Chr1:79466044-79466063 None:intergenic 25.0%
!! GTTTAAGTTCTTACTAGTTA+TGG - Chr1:79463301-79463320 MsG0180004548.01.T01:intron 25.0%
!! TAATGAGTTGGATTCAAATA+TGG - Chr1:79467883-79467902 MsG0180004548.01.T01:intron 25.0%
!! TAATGATTTAGATGGACTTT+AGG - Chr1:79464243-79464262 MsG0180004548.01.T01:CDS 25.0%
!! TTATATTGGTGGTAAAGAAA+TGG + Chr1:79468122-79468141 None:intergenic 25.0%
!!! CTCTGGATAAAATTTTTTAG+CGG - Chr1:79469227-79469246 MsG0180004548.01.T01:intron 25.0%
!!! GGTTTTAAAAAGGTTGATTT+TGG + Chr1:79465541-79465560 None:intergenic 25.0%
!!! TAGACATATTTTTGCTAACA+TGG + Chr1:79465918-79465937 None:intergenic 25.0%
!!! TGAAAAGGTGTTGTTTTAAT+GGG + Chr1:79469201-79469220 None:intergenic 25.0%
!!! TTCATGTATTTTTAACCACT+AGG - Chr1:79466358-79466377 MsG0180004548.01.T01:intron 25.0%
!!! TTCTTTAGAGATATCCTTTT+TGG + Chr1:79469516-79469535 None:intergenic 25.0%
AAAATTCGCAATTGAAGTGA+AGG - Chr1:79463946-79463965 MsG0180004548.01.T01:intron 30.0%
AAAGAAACAGTTCTATCTAG+AGG - Chr1:79465247-79465266 MsG0180004548.01.T01:intron 30.0%
AAATCTCTGTATCAAAAGTG+TGG + Chr1:79466289-79466308 None:intergenic 30.0%
AAATTCGCAATTGAAGTGAA+GGG - Chr1:79463947-79463966 MsG0180004548.01.T01:intron 30.0%
AACTTTATAAGTATGCATCC+TGG - Chr1:79464786-79464805 MsG0180004548.01.T01:CDS 30.0%
AATACAGATTAATCCCAAAG+TGG + Chr1:79469166-79469185 None:intergenic 30.0%
AATGACTCATTCATGAAAGT+GGG - Chr1:79469667-79469686 MsG0180004548.01.T01:intron 30.0%
AATTTAAGAGAACCTACCAT+AGG + Chr1:79462939-79462958 None:intergenic 30.0%
ACAGTTCATAGCTACAATTA+AGG - Chr1:79464029-79464048 MsG0180004548.01.T01:intron 30.0%
ACTAGGACAATTTATCATGA+TGG - Chr1:79466375-79466394 MsG0180004548.01.T01:intron 30.0%
ACTTATTTGAGCTTATCTAC+TGG - Chr1:79463015-79463034 MsG0180004548.01.T01:intron 30.0%
ACTTTCAGAATTGATCTTAG+AGG + Chr1:79469872-79469891 None:intergenic 30.0%
AGAATGTAGATGACTAAGTT+AGG + Chr1:79469141-79469160 None:intergenic 30.0%
AGCATTTCCATAAAAGAAAG+GGG + Chr1:79468509-79468528 None:intergenic 30.0%
ATACTTGGTCTGCAAATAAA+CGG + Chr1:79464368-79464387 None:intergenic 30.0%
ATAGAAATATAGAGAAGACC+AGG + Chr1:79464807-79464826 None:intergenic 30.0%
ATAGTATCATTACCTTTGCT+AGG - Chr1:79466905-79466924 MsG0180004548.01.T01:intron 30.0%
ATATGCTTCAAATTTCTGCA+AGG + Chr1:79467483-79467502 None:intergenic 30.0%
ATCATGATAAATTGTCCTAG+TGG + Chr1:79466376-79466395 None:intergenic 30.0%
ATCCTTCTAAATCATTAGCA+AGG + Chr1:79468880-79468899 None:intergenic 30.0%
ATCTACATTCTTACCACTTT+GGG - Chr1:79469150-79469169 MsG0180004548.01.T01:intron 30.0%
ATGTAATAAGGCTGAAGATA+AGG - Chr1:79469437-79469456 MsG0180004548.01.T01:intron 30.0%
ATTGATTAAGGTTATCCAAG+TGG - Chr1:79463790-79463809 MsG0180004548.01.T01:intron 30.0%
ATTGCAAGGTTAAGAAAAAC+AGG - Chr1:79465218-79465237 MsG0180004548.01.T01:intron 30.0%
ATTTAAGAGAACCTACCATA+GGG + Chr1:79462938-79462957 None:intergenic 30.0%
ATTTATGTATCTGCTTCATC+AGG + Chr1:79466213-79466232 None:intergenic 30.0%
CATAAGTTGTTTATCCAAAC+AGG - Chr1:79463144-79463163 MsG0180004548.01.T01:CDS 30.0%
CTATCAGATTCAATAACACT+TGG - Chr1:79469037-79469056 MsG0180004548.01.T01:intron 30.0%
GAAACCAGTACTTGAATAAA+GGG + Chr1:79468170-79468189 None:intergenic 30.0%
GAAATATGTTCAAATGGCTA+AGG + Chr1:79466189-79466208 None:intergenic 30.0%
GAATAACATCCATAGAAGAA+AGG + Chr1:79465142-79465161 None:intergenic 30.0%
GATTCAATAACACTTGGTAA+AGG - Chr1:79469043-79469062 MsG0180004548.01.T01:intron 30.0%
GCTACAATCAATAAACTACA+TGG - Chr1:79465614-79465633 MsG0180004548.01.T01:CDS 30.0%
GTATGCTTTACACGTTAAAA+TGG - Chr1:79467377-79467396 MsG0180004548.01.T01:intron 30.0%
TAAACACACTTATAGCCTAA+TGG - Chr1:79466467-79466486 MsG0180004548.01.T01:intron 30.0%
TAAGGTTCATAGATAATTCC+TGG + Chr1:79464451-79464470 None:intergenic 30.0%
TAATGACTCATTCATGAAAG+TGG - Chr1:79469666-79469685 MsG0180004548.01.T01:intron 30.0%
TAATTGAATAGTAAACGTGG+AGG - Chr1:79468777-79468796 MsG0180004548.01.T01:intron 30.0%
TAGTATCATTACCTTTGCTA+GGG - Chr1:79466906-79466925 MsG0180004548.01.T01:intron 30.0%
TCAGGTGAAATATGTTCAAA+TGG + Chr1:79466195-79466214 None:intergenic 30.0%
TCCAGAGTTAATGATTTAGA+TGG - Chr1:79464235-79464254 MsG0180004548.01.T01:CDS 30.0%
TCCATCTAAATCATTAACTC+TGG + Chr1:79464239-79464258 None:intergenic 30.0%
TCCTTCTAAATCATTAGCAA+GGG + Chr1:79468879-79468898 None:intergenic 30.0%
TCTACTCTTATACTACATAC+TGG + Chr1:79467792-79467811 None:intergenic 30.0%
TCTTTGTCTCATATAGTAGA+CGG - Chr1:79467665-79467684 MsG0180004548.01.T01:intron 30.0%
TGATGAAGCAGATACATAAA+TGG - Chr1:79466212-79466231 MsG0180004548.01.T01:intron 30.0%
TGGTTTATGATCGAACATTA+TGG - Chr1:79467903-79467922 MsG0180004548.01.T01:intron 30.0%
TTGTCACGTCATAAATGAAT+AGG + Chr1:79465872-79465891 None:intergenic 30.0%
TTGTTGTCAATGTCTTTCTT+AGG - Chr1:79462833-79462852 MsG0180004548.01.T01:intron 30.0%
TTTATAAGTATGCACCCATT+AGG - Chr1:79465583-79465602 MsG0180004548.01.T01:CDS 30.0%
TTTCATGAATGAGTCATTAG+AGG + Chr1:79469665-79469684 None:intergenic 30.0%
TTTGACATTTCGATCTACAA+TGG - Chr1:79462739-79462758 MsG0180004548.01.T01:CDS 30.0%
! AACCTAACCTTTTCCAAAAT+GGG + Chr1:79464492-79464511 None:intergenic 30.0%
! ATTGCGAATTTTGAACAGAA+AGG + Chr1:79463938-79463957 None:intergenic 30.0%
! CTAAGATCAATTCTGAAAGT+GGG - Chr1:79469872-79469891 MsG0180004548.01.T01:CDS 30.0%
! GTTTCAAAACTGCATCTTTT+AGG + Chr1:79466116-79466135 None:intergenic 30.0%
! TCTAAGATCAATTCTGAAAG+TGG - Chr1:79469871-79469890 MsG0180004548.01.T01:CDS 30.0%
! TCTGCTAATTTTCCAACAAT+TGG + Chr1:79463409-79463428 None:intergenic 30.0%
! TGTTTTTCTTAACCTTGCAA+TGG + Chr1:79465219-79465238 None:intergenic 30.0%
! TTTGAAGCATATGACTCAAA+AGG - Chr1:79467491-79467510 MsG0180004548.01.T01:intron 30.0%
!! AGAAAATCCCATTTTGGAAA+AGG - Chr1:79464482-79464501 MsG0180004548.01.T01:intron 30.0%
!! AGAAGCGTTTGATAAAACAT+TGG + Chr1:79462699-79462718 None:intergenic 30.0%
!! TAAAGGCTTTAATGCACTTT+TGG + Chr1:79466070-79466089 None:intergenic 30.0%
!! TCTGCAAATAAACGGATTAT+AGG + Chr1:79464360-79464379 None:intergenic 30.0%
!! TTATCTTCAGCCTTATTACA+TGG + Chr1:79469438-79469457 None:intergenic 30.0%
!! TTTGATTTGATGTATCCTTC+TGG + Chr1:79465562-79465581 None:intergenic 30.0%
!!! ATATCCTTTGCTTTTTTGGA+AGG + Chr1:79469090-79469109 None:intergenic 30.0%
!!! CTTTGCTCGTCTATTTTTTT+AGG - Chr1:79463279-79463298 MsG0180004548.01.T01:intron 30.0%
!!! GAAGATATCCTTTGCTTTTT+TGG + Chr1:79469094-79469113 None:intergenic 30.0%
!!! GTATCCTTCTGGTTTTAAAA+AGG + Chr1:79465551-79465570 None:intergenic 30.0%
!!! GTGAAAAGGTGTTGTTTTAA+TGG + Chr1:79469202-79469221 None:intergenic 30.0%
!!! TCAACCTTTTTAAAACCAGA+AGG - Chr1:79465544-79465563 MsG0180004548.01.T01:intron 30.0%
!!! TTTTTTGCTTTTGGGGTTTT+GGG - Chr1:79462794-79462813 MsG0180004548.01.T01:intron 30.0%
!!! TTTTTTTGCTTTTGGGGTTT+TGG - Chr1:79462793-79462812 MsG0180004548.01.T01:intron 30.0%
AAAAATAGACGAGCAAAGCT+CGG + Chr1:79463277-79463296 None:intergenic 35.0%
AAAATGCCTATACCATTGCA+AGG - Chr1:79465204-79465223 MsG0180004548.01.T01:intron 35.0%
AACCAAGTTAAAGATTGCTG+TGG + Chr1:79468381-79468400 None:intergenic 35.0%
AACGAAAAGCGACTTAATGA+TGG - Chr1:79464871-79464890 MsG0180004548.01.T01:intron 35.0%
AAGATTGGGGGCAAATAAAA+AGG + Chr1:79465007-79465026 None:intergenic 35.0%
AAGTGAAGGGTTTCTTCAAA+AGG - Chr1:79463960-79463979 MsG0180004548.01.T01:intron 35.0%
AAGTGACCAAAAATGAGACA+AGG - Chr1:79465981-79466000 MsG0180004548.01.T01:intron 35.0%
AATGAGTGTTTGTCACCATT+AGG + Chr1:79466485-79466504 None:intergenic 35.0%
ACAATATTCATCCCATCTTC+TGG - Chr1:79462655-79462674 MsG0180004548.01.T01:CDS 35.0%
ACATCCTTCCAAAAAAGCAA+AGG - Chr1:79469083-79469102 MsG0180004548.01.T01:intron 35.0%
ACATGTTTAGCCAAATCTCA+AGG + Chr1:79467359-79467378 None:intergenic 35.0%
ACCATCCATTGAAAAGACAA+AGG + Chr1:79464140-79464159 None:intergenic 35.0%
ACCCTTGCTAATGATTTAGA+AGG - Chr1:79468875-79468894 MsG0180004548.01.T01:intron 35.0%
AGAAGATGGGATGAATATTG+TGG + Chr1:79462656-79462675 None:intergenic 35.0%
AGAATTGATCTTAGAGGCTT+TGG + Chr1:79469866-79469885 None:intergenic 35.0%
AGAGTTCGTATCAAAACAAC+AGG + Chr1:79466708-79466727 None:intergenic 35.0%
AGATGGTAGAAAATAGGCTT+AGG - Chr1:79467744-79467763 MsG0180004548.01.T01:intron 35.0%
AGATTGGGGGCAAATAAAAA+GGG + Chr1:79465006-79465025 None:intergenic 35.0%
AGATTTAGAGGCTAATGAGT+TGG - Chr1:79467871-79467890 MsG0180004548.01.T01:intron 35.0%
AGTAACTGCAGTAGAAAAGA+TGG - Chr1:79467727-79467746 MsG0180004548.01.T01:intron 35.0%
AGTGTGTTTATCTGCAGAAA+AGG + Chr1:79466457-79466476 None:intergenic 35.0%
ATAGTAGACGGGATAGAATT+AGG - Chr1:79467677-79467696 MsG0180004548.01.T01:intron 35.0%
ATCAGATTACCCTTGAGATT+TGG - Chr1:79467346-79467365 MsG0180004548.01.T01:intron 35.0%
ATCATTATCTTGTGCCCTAA+GGG + Chr1:79468540-79468559 None:intergenic 35.0%
ATGAATTGGCTAGATCTTGT+TGG - Chr1:79467114-79467133 MsG0180004548.01.T01:intron 35.0%
ATGACGTGACAATGCTTATT+AGG - Chr1:79465880-79465899 MsG0180004548.01.T01:intron 35.0%
ATGGTGACAAACACTCATTA+AGG - Chr1:79466486-79466505 MsG0180004548.01.T01:intron 35.0%
ATGTCAATCAATGAACCTTG+TGG - Chr1:79468727-79468746 MsG0180004548.01.T01:intron 35.0%
ATTTCTTTGTCTTTGCAGCT+TGG - Chr1:79467292-79467311 MsG0180004548.01.T01:CDS 35.0%
CAATATTCATCCCATCTTCT+GGG - Chr1:79462656-79462675 MsG0180004548.01.T01:CDS 35.0%
CACACTGGAAAAATCACAAA+AGG + Chr1:79466551-79466570 None:intergenic 35.0%
CATCTACATTCTTACCACTT+TGG - Chr1:79469149-79469168 MsG0180004548.01.T01:intron 35.0%
CATGTTTAGCCAAATCTCAA+GGG + Chr1:79467358-79467377 None:intergenic 35.0%
CTTCGCAAAAAAATACACAC+TGG + Chr1:79466566-79466585 None:intergenic 35.0%
CTTTGTCTCATATAGTAGAC+GGG - Chr1:79467666-79467685 MsG0180004548.01.T01:intron 35.0%
GAACAACAAGATTGCCAAAA+AGG - Chr1:79469499-79469518 MsG0180004548.01.T01:intron 35.0%
GACAAGAACCTGGAAAATAT+AGG + Chr1:79468192-79468211 None:intergenic 35.0%
GAGATAAGAAGCTAAAGCAA+TGG + Chr1:79464532-79464551 None:intergenic 35.0%
GCATTTCCATAAAAGAAAGG+GGG + Chr1:79468508-79468527 None:intergenic 35.0%
GGAAACCAGTACTTGAATAA+AGG + Chr1:79468171-79468190 None:intergenic 35.0%
GGATAAACAACTTATGTTGC+AGG + Chr1:79463140-79463159 None:intergenic 35.0%
GTATAAGAGTAGATCAGATG+AGG - Chr1:79467799-79467818 MsG0180004548.01.T01:intron 35.0%
GTTAGGGATACCATGTAATA+AGG - Chr1:79469425-79469444 MsG0180004548.01.T01:intron 35.0%
GTTTATCTGCAGAAAAGGAA+AGG + Chr1:79466452-79466471 None:intergenic 35.0%
TACCTCTAGATTGAAACTAG+AGG - Chr1:79465665-79465684 MsG0180004548.01.T01:CDS 35.0%
TAGAGTTTCTTTGACCTGAT+GGG - Chr1:79463587-79463606 MsG0180004548.01.T01:intron 35.0%
TAGCAATAAACAGACCACAA+AGG + Chr1:79466147-79466166 None:intergenic 35.0%
TATATTCTGACTATCCCATC+AGG + Chr1:79463604-79463623 None:intergenic 35.0%
TATCCAGAGATGATGTGAAA+AGG + Chr1:79469216-79469235 None:intergenic 35.0%
TCTTAACCTTGCAATGGTAT+AGG + Chr1:79465213-79465232 None:intergenic 35.0%
TCTTGTGGCATGAATTATGT+GGG - Chr1:79468039-79468058 MsG0180004548.01.T01:CDS 35.0%
TGAAACATCAAACTCCTTTG+TGG - Chr1:79466130-79466149 MsG0180004548.01.T01:intron 35.0%
TGCTAACATGGATATTAGTG+TGG + Chr1:79465906-79465925 None:intergenic 35.0%
TGTCAATCAATGAACCTTGT+GGG - Chr1:79468728-79468747 MsG0180004548.01.T01:intron 35.0%
TTATGCATGCACAATTTCCA+AGG - Chr1:79468614-79468633 MsG0180004548.01.T01:intron 35.0%
TTCTTCTTCTTCTTGATCCA+GGG + Chr1:79469834-79469853 None:intergenic 35.0%
TTCTTGTGGCATGAATTATG+TGG - Chr1:79468038-79468057 MsG0180004548.01.T01:CDS 35.0%
! AATACAAGAAGGGCATAAGT+GGG + Chr1:79463846-79463865 None:intergenic 35.0%
! ACTGAGAAGATTTTTCCGTA+TGG - Chr1:79466518-79466537 MsG0180004548.01.T01:intron 35.0%
! AGTACTGAATACTGGACAAT+AGG - Chr1:79465109-79465128 MsG0180004548.01.T01:intron 35.0%
! ATTTATCATGATGGTCTTGC+TGG - Chr1:79466384-79466403 MsG0180004548.01.T01:intron 35.0%
! CAACCTAACCTTTTCCAAAA+TGG + Chr1:79464493-79464512 None:intergenic 35.0%
! CTTTTCAATGGATGGTAAAG+TGG - Chr1:79464144-79464163 MsG0180004548.01.T01:intron 35.0%
! GAATTTCCCCCTTTCTTTTA+TGG - Chr1:79468499-79468518 MsG0180004548.01.T01:intron 35.0%
! TGAAAAGAGGCTTTAGTTGT+TGG + Chr1:79465359-79465378 None:intergenic 35.0%
! TTCCTCTAGTTTCAATCTAG+AGG + Chr1:79465670-79465689 None:intergenic 35.0%
! TTTGGTCCTTGTCTCATTTT+TGG + Chr1:79465990-79466009 None:intergenic 35.0%
!! ACTGGTTTCCTATATTTTCC+AGG - Chr1:79468181-79468200 MsG0180004548.01.T01:intron 35.0%
!! ATCCCATTTTGGAAAAGGTT+AGG - Chr1:79464487-79464506 MsG0180004548.01.T01:intron 35.0%
!! CAATCTTTAACTTGGTTCCT+TGG - Chr1:79468384-79468403 MsG0180004548.01.T01:intron 35.0%
!! TTTTTATTTGCCCCCAATCT+TGG - Chr1:79465006-79465025 MsG0180004548.01.T01:intron 35.0%
!!! AAGGTGTTGTTTTAATGGGT+AGG + Chr1:79469197-79469216 None:intergenic 35.0%
!!! AGGTGTTGTTTTAATGGGTA+GGG + Chr1:79469196-79469215 None:intergenic 35.0%
AACTATCAGTTCCCTTGCTA+TGG + Chr1:79468074-79468093 None:intergenic 40.0%
AAGAGAAACTACATGGAGCA+AGG - Chr1:79466663-79466682 MsG0180004548.01.T01:intron 40.0%
AATCATCCAACTGTGCTGTA+TGG - Chr1:79462979-79462998 MsG0180004548.01.T01:intron 40.0%
AATCGAGCAATTCTTCCACT+TGG + Chr1:79463808-79463827 None:intergenic 40.0%
ACAAAGACGCAGTATGATCT+AGG + Chr1:79468252-79468271 None:intergenic 40.0%
ACACCTCATCTAGTGAAAAG+AGG + Chr1:79465372-79465391 None:intergenic 40.0%
ACCTCCAAAAATAGACCCTA+TGG + Chr1:79466932-79466951 None:intergenic 40.0%
ACTGTGCTGTATGGTCTAAT+TGG - Chr1:79462988-79463007 MsG0180004548.01.T01:intron 40.0%
AGAACTCCATCTTCACATCT+GGG - Chr1:79469260-79469279 MsG0180004548.01.T01:intron 40.0%
AGAGGCTATCAGTATGTACA+AGG - Chr1:79465265-79465284 MsG0180004548.01.T01:intron 40.0%
AGATAATTCCTGGACTTGAC+AGG + Chr1:79464441-79464460 None:intergenic 40.0%
AGCTATGAACTGTGTGTCTT+GGG + Chr1:79464022-79464041 None:intergenic 40.0%
AGGGAGTGGGAGATAAAAAT+TGG + Chr1:79464987-79465006 None:intergenic 40.0%
AGGTTCTTGTCCGTGATATA+TGG - Chr1:79468201-79468220 MsG0180004548.01.T01:intron 40.0%
ATATATCACGGACAAGAACC+TGG + Chr1:79468202-79468221 None:intergenic 40.0%
ATCAATGAACCTTGTGGGAA+AGG - Chr1:79468733-79468752 MsG0180004548.01.T01:intron 40.0%
ATCAGGATGTTCACTAGAAG+TGG - Chr1:79464839-79464858 MsG0180004548.01.T01:intron 40.0%
ATCATACTGCGTCTTTGTGA+CGG - Chr1:79468254-79468273 MsG0180004548.01.T01:intron 40.0%
ATGACACCATTAGAGAGAGT+TGG - Chr1:79467701-79467720 MsG0180004548.01.T01:intron 40.0%
ATGACCCAAAAATGAGACGA+AGG + Chr1:79465838-79465857 None:intergenic 40.0%
ATGCTGCAATTCTCCAAGAT+TGG + Chr1:79465022-79465041 None:intergenic 40.0%
ATTAGACCATACAGCACAGT+TGG + Chr1:79462988-79463007 None:intergenic 40.0%
CAAAGACGCAGTATGATCTA+GGG + Chr1:79468251-79468270 None:intergenic 40.0%
CATATGTGTATCTGCTCTTC+TGG + Chr1:79467170-79467189 None:intergenic 40.0%
CATGAGATAACTACGATGCT+TGG + Chr1:79468286-79468305 None:intergenic 40.0%
CATTGAAGACGGTGACTTTA+GGG - Chr1:79469333-79469352 MsG0180004548.01.T01:intron 40.0%
CCACGCTATAACATAGAGTA+TGG - Chr1:79468968-79468987 MsG0180004548.01.T01:intron 40.0%
CCAGTACTTGAATAAAGGGT+AGG + Chr1:79468166-79468185 None:intergenic 40.0%
CCATACTCTATGTTATAGCG+TGG + Chr1:79468971-79468990 None:intergenic 40.0%
CCTACCCTTTATTCAAGTAC+TGG - Chr1:79468163-79468182 MsG0180004548.01.T01:intron 40.0%
CGAACACTAACAAACATGAC+AGG + Chr1:79463503-79463522 None:intergenic 40.0%
CTAAGATGAACTTGTCTCCA+AGG + Chr1:79468404-79468423 None:intergenic 40.0%
CTACATGGAGCAAGGTTTAT+TGG - Chr1:79466671-79466690 MsG0180004548.01.T01:intron 40.0%
CTAGAGTTTCTTTGACCTGA+TGG - Chr1:79463586-79463605 MsG0180004548.01.T01:intron 40.0%
CTCTTCAATTAGAGGAAGAG+TGG - Chr1:79463994-79464013 MsG0180004548.01.T01:intron 40.0%
CTTCTTCTTCTTCTTGATCC+AGG + Chr1:79469835-79469854 None:intergenic 40.0%
GAAAAGCGACTTAATGATGG+AGG - Chr1:79464874-79464893 MsG0180004548.01.T01:intron 40.0%
GAAAATAGGCTTAGGTGGTT+TGG - Chr1:79467752-79467771 MsG0180004548.01.T01:intron 40.0%
GAATAGTAAACGTGGAGGAA+TGG - Chr1:79468782-79468801 MsG0180004548.01.T01:intron 40.0%
GAATGAGTCATTAGAGGCTT+TGG + Chr1:79469659-79469678 None:intergenic 40.0%
GATCATTATCTTGTGCCCTA+AGG + Chr1:79468541-79468560 None:intergenic 40.0%
GATGTTCACTAGAAGTGGTT+GGG - Chr1:79464844-79464863 MsG0180004548.01.T01:intron 40.0%
GCCTTGAAGACACATCAAAT+CGG + Chr1:79464737-79464756 None:intergenic 40.0%
GGAGCAAGGTTTATTGGAAA+TGG - Chr1:79466677-79466696 MsG0180004548.01.T01:intron 40.0%
GTTGAGGAGATGGTTAAAGA+AGG - Chr1:79469477-79469496 MsG0180004548.01.T01:intron 40.0%
TAATCTACCATGTCCCTGTT+TGG + Chr1:79463161-79463180 None:intergenic 40.0%
TACTCTATGTTATAGCGTGG+CGG + Chr1:79468968-79468987 None:intergenic 40.0%
TAGCAAATTCCTTTCCCACA+AGG + Chr1:79468745-79468764 None:intergenic 40.0%
TAGCTATGAACTGTGTGTCT+TGG + Chr1:79464023-79464042 None:intergenic 40.0%
TATCATGGAGCCAACAAAAG+AGG + Chr1:79466423-79466442 None:intergenic 40.0%
TCAATGTCTTTCTTAGGCTG+CGG - Chr1:79462839-79462858 MsG0180004548.01.T01:intron 40.0%
TCGCTGGAGATAAAAAAAGG+AGG - Chr1:79467521-79467540 MsG0180004548.01.T01:intron 40.0%
TCTCTTCTTCTCTTGATCCA+GGG + Chr1:79469623-79469642 None:intergenic 40.0%
TGACACCATTAGAGAGAGTT+GGG - Chr1:79467702-79467721 MsG0180004548.01.T01:intron 40.0%
TGCCACAGCAATCTTTAACT+TGG - Chr1:79468376-79468395 MsG0180004548.01.T01:intron 40.0%
TGCTGCAATTCTCCAAGATT+GGG + Chr1:79465021-79465040 None:intergenic 40.0%
TGGTAGAAAATAGGCTTAGG+TGG - Chr1:79467747-79467766 MsG0180004548.01.T01:intron 40.0%
TGTGAAGATGGAGTTCTCTT+TGG + Chr1:79469257-79469276 None:intergenic 40.0%
TGTGAGCATATGTGACAATG+TGG - Chr1:79469748-79469767 MsG0180004548.01.T01:intron 40.0%
TGTTTATCCAAACAGGGACA+TGG - Chr1:79463151-79463170 MsG0180004548.01.T01:CDS 40.0%
TTCTCTTCTTCTCTTGATCC+AGG + Chr1:79469624-79469643 None:intergenic 40.0%
TTCTGATTGTGAAGCAGACA+AGG - Chr1:79469396-79469415 MsG0180004548.01.T01:intron 40.0%
TTGTGAAACGAATTGTGGGT+TGG + Chr1:79468827-79468846 None:intergenic 40.0%
TTTGGGCTCAAATGCACATT+TGG - Chr1:79465710-79465729 MsG0180004548.01.T01:CDS 40.0%
! AAAGAGGCTTTAGTTGTTGG+TGG + Chr1:79465356-79465375 None:intergenic 40.0%
! AAATGCTAACTTGTGCCCTT+AGG - Chr1:79468522-79468541 MsG0180004548.01.T01:intron 40.0%
! AAGCCTCTTTTCACTAGATG+AGG - Chr1:79465366-79465385 MsG0180004548.01.T01:CDS 40.0%
! AATGCTAACTTGTGCCCTTA+GGG - Chr1:79468523-79468542 MsG0180004548.01.T01:intron 40.0%
! ACACCTTTTCACATCATCTC+TGG - Chr1:79469210-79469229 MsG0180004548.01.T01:intron 40.0%
! AGCAGCCTTTGTCTTTTCAA+TGG - Chr1:79464132-79464151 MsG0180004548.01.T01:intron 40.0%
! ATGAATTATGTGGGAGCATG+GGG - Chr1:79468048-79468067 MsG0180004548.01.T01:CDS 40.0%
! ATTTTCTCACGAGGTTCGTA+AGG + Chr1:79464469-79464488 None:intergenic 40.0%
! CAAAATGGGATTTTCTCACG+AGG + Chr1:79464478-79464497 None:intergenic 40.0%
! CATGAATTATGTGGGAGCAT+GGG - Chr1:79468047-79468066 MsG0180004548.01.T01:CDS 40.0%
! CTCGTGAGAAAATCCCATTT+TGG - Chr1:79464476-79464495 MsG0180004548.01.T01:intron 40.0%
! GAATACAAGAAGGGCATAAG+TGG + Chr1:79463847-79463866 None:intergenic 40.0%
! GATGTGTTGGGTTGTTCAAT+TGG + Chr1:79463660-79463679 None:intergenic 40.0%
! GCCTTTGTCTTTTCAATGGA+TGG - Chr1:79464136-79464155 MsG0180004548.01.T01:intron 40.0%
! GGAACTGATAGTTGATACAG+TGG - Chr1:79468081-79468100 MsG0180004548.01.T01:CDS 40.0%
! GTGTCGCTGGAGATAAAAAA+AGG - Chr1:79467518-79467537 MsG0180004548.01.T01:intron 40.0%
! TCTTGCTAACTTGTGCTCTA+AGG + Chr1:79468673-79468692 None:intergenic 40.0%
! TGGAAAAGGTTAGGTTGCAA+TGG - Chr1:79464496-79464515 MsG0180004548.01.T01:intron 40.0%
! TGGAGAAGAAAGAGCATGAA+AGG - Chr1:79463532-79463551 MsG0180004548.01.T01:intron 40.0%
! TTGGTCCTTCGTCTCATTTT+TGG - Chr1:79465830-79465849 MsG0180004548.01.T01:intron 40.0%
!! ACCGATTTGATGTGTCTTCA+AGG - Chr1:79464733-79464752 MsG0180004548.01.T01:intron 40.0%
!! AGGTTTTGATGTGTGTCTCA+CGG + Chr1:79466869-79466888 None:intergenic 40.0%
!! CAAGGATGACTTTTGTTGTG+TGG - Chr1:79463230-79463249 MsG0180004548.01.T01:intron 40.0%
!! GTGCAGAAAGTACTGAATAC+TGG - Chr1:79465101-79465120 MsG0180004548.01.T01:intron 40.0%
!! TGGTCCTTCGTCTCATTTTT+GGG - Chr1:79465831-79465850 MsG0180004548.01.T01:intron 40.0%
!!! TGTTGTTTTAATGGGTAGGG+TGG + Chr1:79469193-79469212 None:intergenic 40.0%
!!! TTTGCTTTTTGCTCTGCTAC+AGG - Chr1:79465178-79465197 MsG0180004548.01.T01:intron 40.0%
AAGTATGCACCCATTAGGTG+AGG - Chr1:79465588-79465607 MsG0180004548.01.T01:CDS 45.0%
AATGGTAGAGACCTCTCAAC+AGG - Chr1:79463630-79463649 MsG0180004548.01.T01:intron 45.0%
ACAAAAGGAAGCGAGCCATA+CGG + Chr1:79466536-79466555 None:intergenic 45.0%
ACATCAAAACCTGGTCCGAT+TGG - Chr1:79466877-79466896 MsG0180004548.01.T01:intron 45.0%
ACTACCCCAACTCTCTCTAA+TGG + Chr1:79467710-79467729 None:intergenic 45.0%
AGACACACACTACAGGATGT+AGG + Chr1:79467559-79467578 None:intergenic 45.0%
AGCAGACAAGGTCGTAAGTT+AGG - Chr1:79469408-79469427 MsG0180004548.01.T01:intron 45.0%
ATGAATGGCTCGTGATGTGT+TGG + Chr1:79463673-79463692 None:intergenic 45.0%
ATGTAGTCGAACCCACTTAG+TGG - Chr1:79467940-79467959 MsG0180004548.01.T01:intron 45.0%
ATTACCTTTGCTAGGGCCAT+AGG - Chr1:79466913-79466932 MsG0180004548.01.T01:intron 45.0%
CCAACAAAAGAGGCAAACGA+AGG + Chr1:79466413-79466432 None:intergenic 45.0%
CTATTCAATCCAATCGGACC+AGG + Chr1:79466889-79466908 None:intergenic 45.0%
CTGCAATTCTCCAAGATTGG+GGG + Chr1:79465019-79465038 None:intergenic 45.0%
CTTCCAAAAATCAAGCTCCC+TGG - Chr1:79469603-79469622 MsG0180004548.01.T01:CDS 45.0%
GAATAAAGGGTAGGACACTG+AGG + Chr1:79468157-79468176 None:intergenic 45.0%
GAATACTGGACAATAGGCAG+TGG - Chr1:79465115-79465134 MsG0180004548.01.T01:intron 45.0%
GACACCATTAGAGAGAGTTG+GGG - Chr1:79467703-79467722 MsG0180004548.01.T01:intron 45.0%
GAGAACTCCATCTTCACATC+TGG - Chr1:79469259-79469278 MsG0180004548.01.T01:intron 45.0%
GATAGGCCTAACAGGTACAT+AGG + Chr1:79467148-79467167 None:intergenic 45.0%
GCAGACAAGGTCGTAAGTTA+GGG - Chr1:79469409-79469428 MsG0180004548.01.T01:intron 45.0%
GCATGAATTATGTGGGAGCA+TGG - Chr1:79468046-79468065 MsG0180004548.01.T01:CDS 45.0%
GCATTGAAGACGGTGACTTT+AGG - Chr1:79469332-79469351 MsG0180004548.01.T01:intron 45.0%
GCTGCAATTCTCCAAGATTG+GGG + Chr1:79465020-79465039 None:intergenic 45.0%
GGATGTTCACTAGAAGTGGT+TGG - Chr1:79464843-79464862 MsG0180004548.01.T01:intron 45.0%
GGCTATCAGTATGTACAAGG+AGG - Chr1:79465268-79465287 MsG0180004548.01.T01:intron 45.0%
GGGGCAAATAAAAAGGGAGT+GGG + Chr1:79465000-79465019 None:intergenic 45.0%
GTACTGGGACTTCACAACTT+AGG - Chr1:79467436-79467455 MsG0180004548.01.T01:intron 45.0%
GTAGATCAGATGAGGAGAGT+CGG - Chr1:79467807-79467826 MsG0180004548.01.T01:intron 45.0%
GTGAGACACACATCAAAACC+TGG - Chr1:79466868-79466887 MsG0180004548.01.T01:intron 45.0%
GTGTATCTGCTCTTCTGGAT+AGG + Chr1:79467165-79467184 None:intergenic 45.0%
GTTAGTGTTCGTAGTCGTCT+TGG - Chr1:79463512-79463531 MsG0180004548.01.T01:intron 45.0%
TAAGAGAACCTACCATAGGG+CGG + Chr1:79462935-79462954 None:intergenic 45.0%
TATCCAGAGACACACACTAC+AGG + Chr1:79467566-79467585 None:intergenic 45.0%
TGAATGGCTCGTGATGTGTT+GGG + Chr1:79463672-79463691 None:intergenic 45.0%
TGAGACAATGCAGCATAAGC+AGG + Chr1:79466837-79466856 None:intergenic 45.0%
TGCATGCCTATGTACCTGTT+AGG - Chr1:79467139-79467158 MsG0180004548.01.T01:intron 45.0%
TGCTTCACAATCAGAACCTC+TGG + Chr1:79469392-79469411 None:intergenic 45.0%
TGTAGCTGACCTCACCTAAT+GGG + Chr1:79465600-79465619 None:intergenic 45.0%
TGTAGTCGAACCCACTTAGT+GGG - Chr1:79467941-79467960 MsG0180004548.01.T01:intron 45.0%
TTACCTTTGCTAGGGCCATA+GGG - Chr1:79466914-79466933 MsG0180004548.01.T01:intron 45.0%
TTGTAGCTGACCTCACCTAA+TGG + Chr1:79465601-79465620 None:intergenic 45.0%
! ACTAAGTGGGTTCGACTACA+TGG + Chr1:79467941-79467960 None:intergenic 45.0%
! AGGGCCATAGGGTCTATTTT+TGG - Chr1:79466925-79466944 MsG0180004548.01.T01:intron 45.0%
! CACCACCTTTTCCAGATAGA+GGG + Chr1:79463565-79463584 None:intergenic 45.0%
! CCTTCGTTTGCCTCTTTTGT+TGG - Chr1:79466410-79466429 MsG0180004548.01.T01:intron 45.0%
! CTGTGAGCATTGTGACAATG+TGG - Chr1:79469538-79469557 MsG0180004548.01.T01:intron 45.0%
! GAAGCCTTATCCCACTAAGT+GGG + Chr1:79467954-79467973 None:intergenic 45.0%
! GATCCAGGGAGCTTGATTTT+TGG + Chr1:79469609-79469628 None:intergenic 45.0%
!! ATCCTTGGTGTCATGAGTAC+TGG - Chr1:79467420-79467439 MsG0180004548.01.T01:intron 45.0%
!! CAATTGGTTAGCCTGTTGAG+AGG + Chr1:79463644-79463663 None:intergenic 45.0%
!! CAGGGAGCTTGATTTTTGGA+AGG + Chr1:79469605-79469624 None:intergenic 45.0%
!! GACTTTTGTTGTGTGGAGGA+TGG - Chr1:79463237-79463256 MsG0180004548.01.T01:intron 45.0%
!! GCTTTAGTTGTTGGTGGTTG+TGG + Chr1:79465350-79465369 None:intergenic 45.0%
!! GGATGACTTTTGTTGTGTGG+AGG - Chr1:79463233-79463252 MsG0180004548.01.T01:intron 45.0%
!! GGCTTCACAAGCATTGAAGA+CGG - Chr1:79469322-79469341 MsG0180004548.01.T01:intron 45.0%
!! TCCTTGGTGTCATGAGTACT+GGG - Chr1:79467421-79467440 MsG0180004548.01.T01:intron 45.0%
!!! GCCATAGGGTCTATTTTTGG+AGG - Chr1:79466928-79466947 MsG0180004548.01.T01:intron 45.0%
!! AAAAAAAAAAAAGTAAAATA+CGG + Chr1:79465800-79465819 None:intergenic 5.0%
!! AGTAAATTATTATTAATATA+TGG + Chr1:79465444-79465463 None:intergenic 5.0%
!! ATATATGAAATATTATTTAA+CGG - Chr1:79463451-79463470 MsG0180004548.01.T01:intron 5.0%
!! ATATATTAATAATAATTTAC+TGG - Chr1:79465443-79465462 MsG0180004548.01.T01:intron 5.0%
!! TATATTTAATAGAAAATTAA+AGG + Chr1:79466087-79466106 None:intergenic 5.0%
!!! ACATAATTTTTTTTTAAAAT+AGG + Chr1:79465741-79465760 None:intergenic 5.0%
!!! ATAATTTTTTTTTAAAATAG+GGG + Chr1:79465739-79465758 None:intergenic 5.0%
!!! CATAATTTTTTTTTAAAATA+GGG + Chr1:79465740-79465759 None:intergenic 5.0%
!!! GAAATTTTATTAATTTAATT+TGG - Chr1:79465692-79465711 MsG0180004548.01.T01:CDS 5.0%
!!! TTTTAAAAAAAAATTATGTT+TGG - Chr1:79465742-79465761 MsG0180004548.01.T01:intron 5.0%
ATCTCCTCAACGTTCGTGCA+TGG + Chr1:79469468-79469487 None:intergenic 50.0%
ATGCACGAACGTTGAGGAGA+TGG - Chr1:79469467-79469486 MsG0180004548.01.T01:intron 50.0%
CAGATGCCCAGATGTGAAGA+TGG + Chr1:79469269-79469288 None:intergenic 50.0%
CAGATTTGCCTGTCAAGTCC+AGG - Chr1:79464430-79464449 MsG0180004548.01.T01:intron 50.0%
CATCCTGTAGTGTGTGTCTC+TGG - Chr1:79467560-79467579 MsG0180004548.01.T01:intron 50.0%
CCTCTATCTGGAAAAGGTGG+TGG - Chr1:79463563-79463582 MsG0180004548.01.T01:intron 50.0%
CGAACCCACTTAGTGGGATA+AGG - Chr1:79467947-79467966 MsG0180004548.01.T01:intron 50.0%
CTCAAAAGGTTCTGTGTCGC+TGG - Chr1:79467505-79467524 MsG0180004548.01.T01:intron 50.0%
CTCTTCTGGATAGGCCTAAC+AGG + Chr1:79467156-79467175 None:intergenic 50.0%
GGGGGCAAATAAAAAGGGAG+TGG + Chr1:79465001-79465020 None:intergenic 50.0%
TAATGCACAAGTCCGCCCTA+TGG - Chr1:79462920-79462939 MsG0180004548.01.T01:intron 50.0%
TCCCAGTACTCATGACACCA+AGG + Chr1:79467425-79467444 None:intergenic 50.0%
TCTGCAGCTACCCAGAAGAT+GGG + Chr1:79462669-79462688 None:intergenic 50.0%
TTCAACCTCAACTGCACCAG+AGG - Chr1:79469373-79469392 MsG0180004548.01.T01:intron 50.0%
TTCTCCATGCACGAACGTTG+AGG - Chr1:79469461-79469480 MsG0180004548.01.T01:intron 50.0%
TTCTGCAGCTACCCAGAAGA+TGG + Chr1:79462670-79462689 None:intergenic 50.0%
! ATAGGGCGGACTTGTGCATT+AGG + Chr1:79462921-79462940 None:intergenic 50.0%
! CACCTTTTCCAGATAGAGGG+CGG + Chr1:79463562-79463581 None:intergenic 50.0%
! CCACCACCTTTTCCAGATAG+AGG + Chr1:79463566-79463585 None:intergenic 50.0%
! CGAAGCCTTATCCCACTAAG+TGG + Chr1:79467955-79467974 None:intergenic 50.0%
!! GCAAGGGTGTCGTGTTGTTA+TGG + Chr1:79468863-79468882 None:intergenic 50.0%
AAGGATTGCCGCCCTCTATC+TGG - Chr1:79463551-79463570 MsG0180004548.01.T01:intron 55.0%
ACGAACTCTGCGTGCTCGTA+TGG - Chr1:79466719-79466738 MsG0180004548.01.T01:intron 55.0%
AGACCCTATGGCCCTAGCAA+AGG + Chr1:79466920-79466939 None:intergenic 55.0%
CAGAACCTCTGGTGCAGTTG+AGG + Chr1:79469381-79469400 None:intergenic 55.0%
CGCCCTCTATCTGGAAAAGG+TGG - Chr1:79463560-79463579 MsG0180004548.01.T01:intron 55.0%
CTGCTGCGCAGAACCTTTCT+GGG - Chr1:79467017-79467036 MsG0180004548.01.T01:intron 55.0%
GAGGAGAGTCGGATCAGAAG+AGG - Chr1:79467818-79467837 MsG0180004548.01.T01:intron 55.0%
GGCAGTGGCCCTTTCTTCTA+TGG - Chr1:79465130-79465149 MsG0180004548.01.T01:intron 55.0%
TCTGCTGCGCAGAACCTTTC+TGG - Chr1:79467016-79467035 MsG0180004548.01.T01:intron 55.0%
TGCCGCCCTCTATCTGGAAA+AGG - Chr1:79463557-79463576 MsG0180004548.01.T01:intron 55.0%
GCACAAGTCCGCCCTATGGT+AGG - Chr1:79462924-79462943 MsG0180004548.01.T01:intron 60.0%
GGAGCATGGGGCCATAGCAA+GGG - Chr1:79468060-79468079 MsG0180004548.01.T01:CDS 60.0%
! GGGAGCATGGGGCCATAGCA+AGG - Chr1:79468059-79468078 MsG0180004548.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79462596 79469931 79462596 ID=MsG0180004548.01;
Chr1 mRNA 79462596 79469931 79462596 ID=MsG0180004548.01.T01;Parent=MsG0180004548.01
Chr1 CDS 79462596 79462797 79462596 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79463107 79463194 79463107 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79464200 79464324 79464200 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79464762 79464846 79464762 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79465320 79465400 79465320 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79465578 79465744 79465578 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79465867 79465886 79465867 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79467238 79467327 79467238 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79467632 79467683 79467632 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79468024 79468103 79468024 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79469586 79469672 79469586 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Chr1 CDS 79469767 79469931 79469767 ID=MsG0180004548.01.T01.cds;Parent=MsG0180004548.01.T01
Gene Sequence

>MsG0180004548.01.T01

ATGTCATTGAAACGCTTACAATTAGCTCGCAATCTCTATCATTCTTCTCAGATTCAACCACAATATTCATCCCATCTTCTGGGTAGCTGCAGAAACTATTCCAATGTTTTATCAAACGCTTCTGATTTCGCTAATGTTAAAACTTTGACATTTCGATCTACAATGGCTGCGGAGTTTTCCATTTTCATGAATGATAGAAAGATGTCAACTAGTGCAGTGAAAGTCAGACCTAATGCACAAGTCCGCCCTATGGGAGCACAGATTTGCCTGTCAAGTCCAGGAATTATCTATGAACCTTACGAACCTCGTGAGAAAATCCCATTTTGGAAAAGGATGTTCACTAGAAGTGGTTGGGAAAGAACGAAAAGCGACTTAATGATGGAGGTCAAAAATGCCTATACCATTGCAAGGTTAAGAAAAACAGGATATTCAAAGAAACAGTTCTATCTAGAGGCTATCAGTATGTACAAGGAGACACTTAGAATGAAATTAAAGCAAGATGATGTTGAAATTCCAAATGTGTATATGAAATACGAGAAAGAAGACCTGCTTATGCTGCATTGTCTCAACTTGCTATCCGTGAGACACACATCAAAACCTGGTCCGATTGGATTGAATAGTATCATTACCTTTGCTAGGGCCATAGGGTCTATTTTTGGAGATCTTGTTGGTATGCATGCCTATGTACCTGTTAGGCCTATCCAGAAGAGCAGATACACATATGACACTGAGTTGTACTCATTAGACGGGATAGAATTAGGAATGACACCATTAGAGAGAGTTGGGGTAGTAACTGCAGTAGAAAAGATGGTAGAAAATAGGCTTAGGTTCTTGTCCGTGATATATGGATATTTGAGAAGGCTTCGTTCTCTCCCTAGATCATACTGCGTCTTTGTGACGGATATCTCCAAGCATCGTAGTTATCTCATGAAAGAAGAGACCAAAATTTATGCATTGAAGACGGTGACTTTAGGGTGTTCTACACGTAACAGTTCAACCTCAACTGCACCAGAGGTTCTGATTGTGAAGCAGACAAGGTCGATATCTCTAAAGAAATCTGTGAGCATATGTGACAATGTGGAACATATTCTGCCAAATAAAAAGATCAAAAAGAAGAGCAAGTCCTTCCAAAAATCAAGCTCCCTGGATCAAGAAGAAGAAGAAGAAGAAGAACCAAAGCCTCTAAGATCAATTCTGAAAGTGGGTTCTGATCTCAATGACCAATCCAATTCAATTTGTTGA
Protein sequence

>MsG0180004548.01.T01

MSLKRLQLARNLYHSSQIQPQYSSHLLGSCRNYSNVLSNASDFANVKTLTFRSTMAAEFSIFMNDRKMSTSAVKVRPNAQVRPMGAQICLSSPGIIYEPYEPREKIPFWKRMFTRSGWERTKSDLMMEVKNAYTIARLRKTGYSKKQFYLEAISMYKETLRMKLKQDDVEIPNVYMKYEKEDLLMLHCLNLLSVRHTSKPGPIGLNSIITFARAIGSIFGDLVGMHAYVPVRPIQKSRYTYDTELYSLDGIELGMTPLERVGVVTAVEKMVENRLRFLSVIYGYLRRLRSLPRSYCVFVTDISKHRSYLMKEETKIYALKTVTLGCSTRNSSTSTAPEVLIVKQTRSISLKKSVSICDNVEHILPNKKIKKKSKSFQKSSSLDQEEEEEEEPKPLRSILKVGSDLNDQSNSIC*