Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004129.01.T01 | XP_003590835.1 | 99.248 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 2.02E-86 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004129.01.T01 | P55844 | 90.977 | 133 | 12 | 0 | 1 | 133 | 1 | 133 | 1.45E-82 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004129.01.T01 | G7I4V0 | 99.248 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 9.63e-87 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048216.01 | MsG0180004129.01 | 0.811969 | 5.366256e-51 | 3.368847e-48 |
| MsG0080048687.01 | MsG0180004129.01 | 0.827662 | 1.382137e-54 | 1.342990e-51 |
| MsG0080048968.01 | MsG0180004129.01 | 0.811512 | 6.745865e-51 | 4.184081e-48 |
| MsG0080048971.01 | MsG0180004129.01 | 0.883001 | 6.486798e-71 | 4.040223e-67 |
| MsG0180000139.01 | MsG0180004129.01 | 0.848340 | 6.523980e-60 | 1.193434e-56 |
| MsG0180000339.01 | MsG0180004129.01 | 0.902941 | 5.787844e-79 | 8.388375e-75 |
| MsG0180000614.01 | MsG0180004129.01 | 0.841514 | 4.538467e-58 | 6.684521e-55 |
| MsG0180000615.01 | MsG0180004129.01 | 0.809234 | 2.092915e-50 | 1.222194e-47 |
| MsG0180002023.01 | MsG0180004129.01 | 0.851499 | 8.530876e-61 | 1.730080e-57 |
| MsG0180002458.01 | MsG0180004129.01 | 0.813117 | 3.010071e-51 | 1.948467e-48 |
| MsG0180002547.01 | MsG0180004129.01 | 0.804840 | 1.781074e-49 | 9.279547e-47 |
| MsG0180003115.01 | MsG0180004129.01 | 0.849379 | 3.358301e-60 | 6.354558e-57 |
| MsG0180003117.01 | MsG0180004129.01 | 0.887349 | 1.542694e-72 | 1.143044e-68 |
| MsG0180003313.01 | MsG0180004129.01 | 0.815309 | 9.873557e-52 | 6.783255e-49 |
| MsG0180003612.01 | MsG0180004129.01 | 0.843353 | 1.476779e-58 | 2.304484e-55 |
| MsG0180003651.01 | MsG0180004129.01 | 0.829917 | 3.935285e-55 | 4.084475e-52 |
| MsG0180003793.01 | MsG0180004129.01 | 0.905772 | 3.012849e-80 | 4.946788e-76 |
| MsG0180004009.01 | MsG0180004129.01 | 0.878377 | 2.951041e-69 | 1.537211e-65 |
| MsG0180004129.01 | MsG0180004130.01 | 0.973806 | 4.679597e-137 | 6.189336e-131 |
| MsG0180004129.01 | MsG0180004481.01 | 0.833210 | 6.078075e-56 | 6.952314e-53 |
| MsG0180004129.01 | MsG0180004482.01 | 0.829886 | 4.004088e-55 | 4.152349e-52 |
| MsG0180004129.01 | MsG0180004509.01 | 0.861504 | 9.795570e-64 | 2.778064e-60 |
| MsG0180004129.01 | MsG0180004548.01 | 0.818497 | 1.900930e-52 | 1.425244e-49 |
| MsG0180004129.01 | MsG0180004656.01 | 0.802264 | 6.093723e-49 | 2.971790e-46 |
| MsG0180004129.01 | MsG0180004854.01 | 0.841661 | 4.150158e-58 | 6.140201e-55 |
| MsG0180004129.01 | MsG0180005366.01 | 0.806346 | 8.601936e-50 | 4.657857e-47 |
| MsG0180004129.01 | MsG0180005382.01 | 0.800049 | 1.729334e-48 | 7.973106e-46 |
| MsG0180004129.01 | MsG0180005426.01 | 0.879163 | 1.559639e-69 | 8.367616e-66 |
| MsG0180004129.01 | MsG0180005436.01 | 0.820241 | 7.608878e-53 | 5.987705e-50 |
| MsG0180004129.01 | MsG0180005659.01 | 0.866297 | 3.159878e-65 | 1.059748e-61 |
| MsG0180004129.01 | MsG0180005851.01 | 0.852249 | 5.224131e-61 | 1.085056e-57 |
| MsG0180004129.01 | MsG0180005957.01 | 0.856842 | 2.446642e-62 | 5.917008e-59 |
| MsG0180004129.01 | MsG0280006406.01 | 0.858367 | 8.649485e-63 | 2.202224e-59 |
| MsG0180004129.01 | MsG0280006424.01 | 0.821008 | 5.071556e-53 | 4.077485e-50 |
| MsG0180004129.01 | MsG0280006741.01 | 0.849578 | 2.955560e-60 | 5.628162e-57 |
| MsG0180004129.01 | MsG0280006819.01 | 0.861208 | 1.205794e-63 | 3.384932e-60 |
| MsG0180004129.01 | MsG0280006836.01 | 0.879285 | 1.411897e-69 | 7.612148e-66 |
| MsG0180004129.01 | MsG0280006993.01 | 0.916181 | 2.424805e-85 | 6.586683e-81 |
| MsG0180004129.01 | MsG0280007634.01 | 0.818192 | 2.227971e-52 | 1.656437e-49 |
| MsG0180004129.01 | MsG0280007690.01 | 0.810905 | 9.135987e-51 | 5.576431e-48 |
| MsG0180004129.01 | MsG0280007847.01 | 0.823811 | 1.132966e-53 | 9.859405e-51 |
| MsG0180004129.01 | MsG0280008118.01 | 0.917092 | 8.083205e-86 | 2.292622e-81 |
| MsG0180004129.01 | MsG0280008283.01 | 0.919952 | 2.363835e-87 | 7.800972e-83 |
| MsG0180004129.01 | MsG0280009141.01 | 0.844337 | 8.047311e-59 | 1.295041e-55 |
| MsG0180004129.01 | MsG0280009230.01 | 0.875438 | 3.081262e-68 | 1.438459e-64 |
| MsG0180004129.01 | MsG0280009372.01 | 0.857523 | 1.540711e-62 | 3.813631e-59 |
| MsG0180004129.01 | MsG0280009375.01 | 0.928697 | 2.000271e-92 | 1.071414e-87 |
| MsG0180004129.01 | MsG0280009575.01 | 0.829517 | 4.923913e-55 | 5.051081e-52 |
| MsG0180004129.01 | MsG0280009716.01 | 0.830487 | 2.855989e-55 | 3.013168e-52 |
| MsG0180004129.01 | MsG0280010130.01 | 0.801835 | 7.466248e-49 | 3.601570e-46 |
| MsG0180004129.01 | MsG0280010383.01 | 0.846316 | 2.344814e-59 | 4.019675e-56 |
| MsG0180004129.01 | MsG0280010495.01 | 0.907021 | 7.946632e-81 | 1.382521e-76 |
| MsG0180004129.01 | MsG0280010525.01 | 0.823174 | 1.596848e-53 | 1.364714e-50 |
| MsG0180004129.01 | MsG0280010776.01 | 0.885191 | 1.005625e-71 | 6.836790e-68 |
| MsG0180004129.01 | MsG0280010801.01 | 0.893604 | 5.386854e-75 | 5.167685e-71 |
| MsG0180004129.01 | MsG0280010995.01 | 0.832432 | 9.486546e-56 | 1.060098e-52 |
| MsG0180004129.01 | MsG0280011234.01 | 0.832425 | 9.520687e-56 | 1.063734e-52 |
| MsG0180004129.01 | MsG0280011387.01 | 0.871685 | 5.659656e-67 | 2.303615e-63 |
| MsG0180004129.01 | MsG0380011614.01 | 0.838137 | 3.437793e-57 | 4.562157e-54 |
| MsG0180004129.01 | MsG0380011643.01 | 0.821614 | 3.676159e-53 | 3.005438e-50 |
| MsG0180004129.01 | MsG0380011704.01 | 0.807312 | 5.375349e-50 | 2.984304e-47 |
| MsG0180004129.01 | MsG0380012073.01 | 0.863958 | 1.715660e-64 | 5.296403e-61 |
| MsG0180004129.01 | MsG0380012108.01 | 0.867211 | 1.617865e-65 | 5.602545e-62 |
| MsG0180004129.01 | MsG0380014577.01 | 0.829120 | 6.149816e-55 | 6.235563e-52 |
| MsG0180004129.01 | MsG0380015027.01 | 0.829653 | 4.562813e-55 | 4.699510e-52 |
| MsG0180004129.01 | MsG0380015818.01 | 0.820468 | 6.750492e-53 | 5.345892e-50 |
| MsG0180004129.01 | MsG0380016290.01 | 0.818118 | 2.315895e-52 | 1.718283e-49 |
| MsG0180004129.01 | MsG0380017382.01 | 0.851023 | 1.162687e-60 | 2.321685e-57 |
| MsG0180004129.01 | MsG0380017556.01 | 0.820268 | 7.503423e-53 | 5.909151e-50 |
| MsG0180004129.01 | MsG0380017788.01 | 0.815700 | 8.081808e-52 | 5.612313e-49 |
| MsG0180004129.01 | MsG0480018252.01 | 0.802579 | 5.246633e-49 | 2.579268e-46 |
| MsG0180004129.01 | MsG0480018477.01 | 0.867457 | 1.349229e-65 | 4.714228e-62 |
| MsG0180004129.01 | MsG0480020959.01 | 0.897726 | 1.063373e-76 | 1.217205e-72 |
| MsG0180004129.01 | MsG0480021006.01 | 0.916368 | 1.937128e-85 | 5.309276e-81 |
| MsG0180004129.01 | MsG0480021159.01 | 0.803955 | 2.722744e-49 | 1.386611e-46 |
| MsG0180004129.01 | MsG0480021904.01 | 0.862406 | 5.185378e-64 | 1.516904e-60 |
| MsG0180004129.01 | MsG0480021994.01 | 0.800403 | 1.465388e-48 | 6.817173e-46 |
| MsG0180004129.01 | MsG0480022035.01 | 0.819412 | 1.177663e-52 | 9.055620e-50 |
| MsG0180004129.01 | MsG0480022693.01 | 0.827381 | 1.614149e-54 | 1.555961e-51 |
| MsG0180004129.01 | MsG0480022913.01 | 0.820448 | 6.822747e-53 | 5.400093e-50 |
| MsG0180004129.01 | MsG0480022960.01 | 0.802015 | 6.856476e-49 | 3.322570e-46 |
| MsG0180004129.01 | MsG0480023149.01 | 0.901141 | 3.614593e-78 | 4.818519e-74 |
| MsG0180004129.01 | MsG0480023221.01 | 0.803849 | 2.864115e-49 | 1.454628e-46 |
| MsG0180004129.01 | MsG0480023467.01 | 0.865028 | 7.947231e-65 | 2.548754e-61 |
| MsG0180004129.01 | MsG0480023559.01 | 0.801254 | 9.820369e-49 | 4.668132e-46 |
| MsG0180004129.01 | MsG0480023968.01 | 0.862751 | 4.060181e-64 | 1.202240e-60 |
| MsG0180004129.01 | MsG0580024084.01 | 0.801350 | 9.387124e-49 | 4.473010e-46 |
| MsG0180004129.01 | MsG0580024369.01 | 0.860654 | 1.776970e-63 | 4.893833e-60 |
| MsG0180004129.01 | MsG0580024390.01 | 0.829060 | 6.356670e-55 | 6.433624e-52 |
| MsG0180004129.01 | MsG0580024544.01 | 0.828039 | 1.122015e-54 | 1.102397e-51 |
| MsG0180004129.01 | MsG0580025400.01 | 0.891488 | 3.796496e-74 | 3.335482e-70 |
| MsG0180004129.01 | MsG0580025421.01 | 0.843542 | 1.314194e-58 | 2.062943e-55 |
| MsG0180004129.01 | MsG0580027043.01 | 0.936088 | 3.035801e-97 | 2.536030e-92 |
| MsG0180004129.01 | MsG0580027361.01 | 0.801423 | 9.069244e-49 | 4.329413e-46 |
| MsG0180004129.01 | MsG0580029132.01 | 0.902012 | 1.497261e-78 | 2.077643e-74 |
| MsG0180004129.01 | MsG0580029283.01 | 0.855424 | 6.366441e-62 | 1.469238e-58 |
| MsG0180004129.01 | MsG0580029300.01 | 0.830910 | 2.249971e-55 | 2.403836e-52 |
| MsG0180004129.01 | MsG0680030414.01 | 0.816475 | 5.425978e-52 | 3.848540e-49 |
| MsG0180004129.01 | MsG0680030721.01 | 0.803190 | 3.924151e-49 | 1.959467e-46 |
| MsG0180004129.01 | MsG0680031628.01 | 0.817424 | 3.322194e-52 | 2.418554e-49 |
| MsG0180004129.01 | MsG0680031763.01 | 0.814798 | 1.282251e-51 | 8.687696e-49 |
| MsG0180004129.01 | MsG0680031822.01 | 0.817096 | 3.936563e-52 | 2.840034e-49 |
| MsG0180004129.01 | MsG0680032770.01 | 0.849971 | 2.295348e-60 | 4.427937e-57 |
| MsG0180004129.01 | MsG0680034671.01 | 0.830335 | 3.112402e-55 | 3.269455e-52 |
| MsG0180004129.01 | MsG0680035306.01 | 0.806667 | 7.359428e-50 | 4.017681e-47 |
| MsG0180004129.01 | MsG0680035848.01 | 0.866275 | 3.212617e-65 | 1.076596e-61 |
| MsG0180004129.01 | MsG0680035854.01 | 0.872815 | 2.379492e-67 | 1.009476e-63 |
| MsG0180004129.01 | MsG0780036240.01 | 0.913465 | 5.962010e-84 | 1.411752e-79 |
| MsG0180004129.01 | MsG0780036547.01 | 0.853795 | 1.886173e-61 | 4.124083e-58 |
| MsG0180004129.01 | MsG0780036813.01 | 0.832072 | 1.164186e-55 | 1.287278e-52 |
| MsG0180004129.01 | MsG0780036822.01 | 0.839368 | 1.652655e-57 | 2.277385e-54 |
| MsG0180004129.01 | MsG0780038400.01 | 0.884918 | 1.271125e-71 | 8.547269e-68 |
| MsG0180004129.01 | MsG0780038587.01 | 0.876843 | 1.011595e-68 | 4.978609e-65 |
| MsG0180004129.01 | MsG0780039258.01 | 0.808472 | 3.045066e-50 | 1.742719e-47 |
| MsG0180004129.01 | MsG0780039271.01 | 0.801071 | 1.070247e-48 | 5.064234e-46 |
| MsG0180004129.01 | MsG0780039643.01 | 0.825019 | 5.889872e-54 | 5.305189e-51 |
| MsG0180004129.01 | MsG0780039848.01 | 0.823245 | 1.536401e-53 | 1.315680e-50 |
| MsG0180004129.01 | MsG0780040338.01 | 0.881804 | 1.770323e-70 | 1.051766e-66 |
| MsG0180004129.01 | MsG0780040718.01 | 0.819937 | 8.935039e-53 | 6.972352e-50 |
| MsG0180004129.01 | MsG0780040900.01 | 0.849452 | 3.204520e-60 | 6.077529e-57 |
| MsG0180004129.01 | MsG0780041137.01 | 0.821618 | 3.668775e-53 | 2.999722e-50 |
| MsG0180004129.01 | MsG0780041147.01 | 0.838511 | 2.753363e-57 | 3.696084e-54 |
| MsG0180004129.01 | MsG0780041223.01 | 0.890952 | 6.181122e-74 | 5.311378e-70 |
| MsG0180004129.01 | MsG0780041224.01 | 0.815357 | 9.634574e-52 | 6.627851e-49 |
| MsG0180004129.01 | MsG0780041462.01 | 0.840379 | 9.008478e-58 | 1.280897e-54 |
| MsG0180004129.01 | MsG0780041519.01 | 0.889850 | 1.673173e-73 | 1.372975e-69 |
| MsG0180004129.01 | MsG0780041688.01 | 0.886688 | 2.751044e-72 | 1.985262e-68 |
| MsG0180004129.01 | MsG0880041967.01 | 0.838903 | 2.180912e-57 | 2.962615e-54 |
| MsG0180004129.01 | MsG0880042128.01 | 0.805010 | 1.641125e-49 | 8.587256e-47 |
| MsG0180004129.01 | MsG0880042519.01 | 0.808948 | 2.409829e-50 | 1.396414e-47 |
| MsG0180004129.01 | MsG0880042581.01 | 0.860122 | 2.574521e-63 | 6.962322e-60 |
| MsG0180004129.01 | MsG0880042991.01 | 0.846873 | 1.652050e-59 | 2.883531e-56 |
| MsG0180004129.01 | MsG0880043517.01 | 0.805744 | 1.151482e-49 | 6.140376e-47 |
| MsG0180004129.01 | MsG0880043770.01 | 0.826303 | 2.920839e-54 | 2.728711e-51 |
| MsG0180004129.01 | MsG0880044711.01 | 0.844855 | 5.837150e-59 | 9.548072e-56 |
| MsG0180004129.01 | MsG0880045656.01 | 0.801658 | 8.115001e-49 | 3.896948e-46 |
| MsG0180004129.01 | MsG0880046177.01 | 0.839972 | 1.150578e-57 | 1.615564e-54 |
| MsG0180004129.01 | MsG0880046321.01 | 0.800172 | 1.632540e-48 | 7.550166e-46 |
| MsG0180004129.01 | MsG0880046328.01 | 0.830148 | 3.457283e-55 | 3.612259e-52 |
| MsG0180004129.01 | MsG0880046444.01 | 0.849856 | 2.471174e-60 | 4.749038e-57 |
| MsG0180004129.01 | MsG0880046575.01 | 0.939232 | 1.795004e-99 | 1.822693e-94 |
| MsG0180004129.01 | MsG0880046631.01 | 0.816904 | 4.348724e-52 | 3.120943e-49 |
| MsG0180004129.01 | MsG0880046879.01 | 0.876340 | 1.509142e-68 | 7.289778e-65 |
| MsG0180004129.01 | MsG0880046933.01 | 0.822859 | 1.890941e-53 | 1.601789e-50 |
| MsG0180004129.01 | MsG0880047427.01 | 0.841945 | 3.492044e-58 | 5.212915e-55 |
| MsG0180004129.01 | MsG0880047428.01 | 0.866803 | 2.183096e-65 | 7.453924e-62 |
| MsG0180004129.01 | MsG0880047448.01 | 0.807248 | 5.546588e-50 | 3.074189e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004129.01 | MsG0180004130.01 | PPI |
| MsG0280009331.01 | MsG0180004129.01 | PPI |
| MsG0380018062.01 | MsG0180004129.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004129.01.T01 | MTR_1g075720 | 99.248 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 2.44e-90 | 258 |
| MsG0180004129.01.T01 | MTR_4g120770 | 95.489 | 133 | 6 | 0 | 1 | 133 | 1 | 133 | 4.62e-89 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004129.01.T01 | AT2G20450 | 84.962 | 133 | 20 | 0 | 1 | 133 | 1 | 133 | 7.83e-77 | 224 |
| MsG0180004129.01.T01 | AT4G27090 | 85.385 | 130 | 19 | 0 | 1 | 130 | 1 | 130 | 6.79e-76 | 221 |
Find 43 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTATCAAAATCATTA+AGG | 0.237759 | 1:-73744319 | None:intergenic |
| GATTATGTTGGCCAAGATTA+AGG | 0.263288 | 1:+73744343 | MsG0180004129.01.T01:CDS |
| GTCAACTATGGTCCAGATTA+TGG | 0.285686 | 1:+73743848 | MsG0180004129.01.T01:CDS |
| GAAAATGGGTTACCCTAGTT+TGG | 0.329740 | 1:-73743901 | None:intergenic |
| TTTGACGAGATCCTTCTTCT+TGG | 0.330249 | 1:-73744096 | None:intergenic |
| GAAAGCCTCTTGAAATTGAT+TGG | 0.348542 | 1:-73744038 | None:intergenic |
| TTGACGAGATCCTTCTTCTT+GGG | 0.370770 | 1:-73744095 | None:intergenic |
| ACAACGAGCTTGCCATAATC+TGG | 0.375981 | 1:-73743860 | None:intergenic |
| CTAAAATTATACCTTAATCT+TGG | 0.381940 | 1:-73744354 | None:intergenic |
| TCCAAGTTGTACTAAATAGA+AGG | 0.385008 | 1:-73745146 | None:intergenic |
| GTGCCTCAGAAAATCGAAAA+TGG | 0.394255 | 1:+73743705 | MsG0180004129.01.T01:exon |
| TGCAGAGGGCTGGTGTTGTT+AGG | 0.431787 | 1:+73745045 | MsG0180004129.01.T01:intron |
| TTGATGTTATCGACCAAACT+AGG | 0.433748 | 1:+73743888 | MsG0180004129.01.T01:CDS |
| GAACCTATCAAAATCATTAA+GGG | 0.440003 | 1:-73744318 | None:intergenic |
| AACAATCAATTTCCTTCCCC+AGG | 0.448020 | 1:-73744279 | None:intergenic |
| ATTGGAGCTCTCTCCATGTC+AGG | 0.463357 | 1:-73744020 | None:intergenic |
| AGAGTTGCACTTGTCAACTA+TGG | 0.467898 | 1:+73743836 | MsG0180004129.01.T01:CDS |
| GCTGAGGAAGACCGCTGCTT+AGG | 0.472651 | 1:+73745082 | MsG0180004129.01.T01:CDS |
| AATTCTACCTGCAGCTTCCA+TGG | 0.474519 | 1:-73744120 | None:intergenic |
| TTTCAATTTGTGCAGAGGGC+TGG | 0.483986 | 1:+73745035 | MsG0180004129.01.T01:intron |
| GGAAATTGATTGTTAAGAAG+AGG | 0.493248 | 1:+73744288 | MsG0180004129.01.T01:CDS |
| TTCAAGAGGTTTGTTGAGAT+CGG | 0.494020 | 1:+73743812 | MsG0180004129.01.T01:CDS |
| CAAGAGAGTTCCCAAGAAGA+AGG | 0.508677 | 1:+73744085 | MsG0180004129.01.T01:CDS |
| ACAAGTGGGAGAAGAGCTCC+TGG | 0.539704 | 1:+73744261 | MsG0180004129.01.T01:CDS |
| AATTGATTGTTAAGAAGAGG+AGG | 0.539799 | 1:+73744291 | MsG0180004129.01.T01:CDS |
| TGATAGGTTCAAGATTATGT+TGG | 0.542816 | 1:+73744331 | MsG0180004129.01.T01:CDS |
| TGATAGATGTGAAGAACAAG+TGG | 0.562094 | 1:+73744246 | MsG0180004129.01.T01:intron |
| GGCACTCGCAGCTGAAACAA+AGG | 0.562800 | 1:-73743687 | None:intergenic |
| GTCAAAGCCATGGAAGCTGC+AGG | 0.563654 | 1:+73744113 | MsG0180004129.01.T01:CDS |
| ATCTCAACAAACCTCTTGAA+CGG | 0.571035 | 1:-73743809 | None:intergenic |
| GAAGGATCTCGTCAAAGCCA+TGG | 0.572972 | 1:+73744103 | MsG0180004129.01.T01:CDS |
| GAGCTCCAATCAATTTCAAG+AGG | 0.584468 | 1:+73744033 | MsG0180004129.01.T01:CDS |
| ATCAAGCAAGAAAGAGCTAG+AGG | 0.585153 | 1:+73745300 | MsG0180004129.01.T01:three_prime_UTR |
| GGGAGAAGAGCTCCTGGGGA+AGG | 0.586483 | 1:+73744267 | MsG0180004129.01.T01:CDS |
| TCTTTGTTCAGCCGTTCAAG+AGG | 0.591089 | 1:+73743798 | MsG0180004129.01.T01:intron |
| TCTTGTTGATGCACCTGACA+TGG | 0.596389 | 1:+73744007 | MsG0180004129.01.T01:CDS |
| ATTGATTGTTAAGAAGAGGA+GGG | 0.602431 | 1:+73744292 | MsG0180004129.01.T01:CDS |
| TGATGTTATCGACCAAACTA+GGG | 0.607546 | 1:+73743889 | MsG0180004129.01.T01:CDS |
| GGCAAGAACTTGCTAAGCTG+AGG | 0.613930 | 1:+73745066 | MsG0180004129.01.T01:CDS |
| AAGTGGGAGAAGAGCTCCTG+GGG | 0.619297 | 1:+73744263 | MsG0180004129.01.T01:CDS |
| GATAGATGTGAAGAACAAGT+GGG | 0.623335 | 1:+73744247 | MsG0180004129.01.T01:intron |
| CAAGTGGGAGAAGAGCTCCT+GGG | 0.641380 | 1:+73744262 | MsG0180004129.01.T01:CDS |
| ATGAAGTAATGCCTAAGCAG+CGG | 0.686386 | 1:-73745093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGTATTTTTTTTTTTTG+TGG | + | Chr1:73744203-73744222 | MsG0180004129.01.T01:intron | 10.0% |
| !! | ACAAAAATAAATACATAGAT+AGG | - | Chr1:73744157-73744176 | None:intergenic | 15.0% |
| !! | TATGTTCAAAAATTGTTAAA+TGG | - | Chr1:73744868-73744887 | None:intergenic | 15.0% |
| !! | TTTGGTTAAATAACTTAATT+AGG | + | Chr1:73744423-73744442 | MsG0180004129.01.T01:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTGGTAAT+TGG | + | Chr1:73744210-73744229 | MsG0180004129.01.T01:intron | 15.0% |
| !! | AAAGATTGGAAATTTGAAAA+TGG | - | Chr1:73743919-73743938 | None:intergenic | 20.0% |
| !! | AAGATTGGAAATTTGAAAAT+GGG | - | Chr1:73743918-73743937 | None:intergenic | 20.0% |
| !! | ATTAGAGAAAGATTAAGAAA+TGG | - | Chr1:73743766-73743785 | None:intergenic | 20.0% |
| !! | CTAAAATTATACCTTAATCT+TGG | - | Chr1:73744357-73744376 | None:intergenic | 20.0% |
| !! | TTAAGTTATTTAACCAAACA+AGG | - | Chr1:73744421-73744440 | None:intergenic | 20.0% |
| !!! | AATCTGTTTCTTAAGTTATT+TGG | + | Chr1:73744825-73744844 | MsG0180004129.01.T01:intron | 20.0% |
| !!! | ATTGTTTTTGTATAAGCTTT+AGG | + | Chr1:73744607-73744626 | MsG0180004129.01.T01:intron | 20.0% |
| !!! | GTTTGCATATTTTTTAATGT+TGG | + | Chr1:73745338-73745357 | MsG0180004129.01.T01:three_prime_UTR | 20.0% |
| !!! | TGTTTTTTCAAATTGTGTTT+TGG | + | Chr1:73744974-73744993 | MsG0180004129.01.T01:intron | 20.0% |
| !!! | TTGTTTTTGTATAAGCTTTA+GGG | + | Chr1:73744608-73744627 | MsG0180004129.01.T01:intron | 20.0% |
| !!! | TTTTCAGAAATTAAGCAAAT+GGG | - | Chr1:73743959-73743978 | None:intergenic | 20.0% |
| !!! | TTTTTCAGAAATTAAGCAAA+TGG | - | Chr1:73743960-73743979 | None:intergenic | 20.0% |
| ! | ATAATTTCAATTTGTGCAGA+GGG | + | Chr1:73745031-73745050 | MsG0180004129.01.T01:intron | 25.0% |
| ! | GAACCTATCAAAATCATTAA+GGG | - | Chr1:73744321-73744340 | None:intergenic | 25.0% |
| ! | TATGCAATCAAAAGCAAAAA+TGG | - | Chr1:73745261-73745280 | None:intergenic | 25.0% |
| ! | TGAACCTATCAAAATCATTA+AGG | - | Chr1:73744322-73744341 | None:intergenic | 25.0% |
| ! | TTTGGATAAATACCTTAACT+TGG | + | Chr1:73744505-73744524 | MsG0180004129.01.T01:intron | 25.0% |
| !! | TTAAGGTATTTATCCAAACA+GGG | - | Chr1:73744503-73744522 | None:intergenic | 25.0% |
| !! | TTTTCATAAGTCAATCCAAA+CGG | - | Chr1:73744635-73744654 | None:intergenic | 25.0% |
| !!! | CTAGAGGTTTTATTGTTATT+AGG | + | Chr1:73745316-73745335 | MsG0180004129.01.T01:three_prime_UTR | 25.0% |
| !!! | TTGTGAAATGCTTTTAAGTT+AGG | + | Chr1:73744477-73744496 | MsG0180004129.01.T01:intron | 25.0% |
| !!! | TTGTGAAATGCTTTTTAGTT+AGG | + | Chr1:73744395-73744414 | MsG0180004129.01.T01:intron | 25.0% |
| AAAGTTGTATCTTCATAAGC+TGG | + | Chr1:73744710-73744729 | MsG0180004129.01.T01:intron | 30.0% | |
| AATTGATTGTTAAGAAGAGG+AGG | + | Chr1:73744291-73744310 | MsG0180004129.01.T01:CDS | 30.0% | |
| ATTGATTGTTAAGAAGAGGA+GGG | + | Chr1:73744292-73744311 | MsG0180004129.01.T01:CDS | 30.0% | |
| CATAATTTCAATTTGTGCAG+AGG | + | Chr1:73745030-73745049 | MsG0180004129.01.T01:intron | 30.0% | |
| GGAAATTGATTGTTAAGAAG+AGG | + | Chr1:73744288-73744307 | MsG0180004129.01.T01:CDS | 30.0% | |
| GGATGAAAATGGAAAAAGAT+TGG | - | Chr1:73743933-73743952 | None:intergenic | 30.0% | |
| TAATATTCATGAGCTTGTCA+AGG | - | Chr1:73744750-73744769 | None:intergenic | 30.0% | |
| TCCAAGTTGTACTAAATAGA+AGG | - | Chr1:73745149-73745168 | None:intergenic | 30.0% | |
| TCCTTCTATTTAGTACAACT+TGG | + | Chr1:73745145-73745164 | MsG0180004129.01.T01:intron | 30.0% | |
| TCTCGTAACACAAATATCTT+AGG | - | Chr1:73745217-73745236 | None:intergenic | 30.0% | |
| TGATAGGTTCAAGATTATGT+TGG | + | Chr1:73744331-73744350 | MsG0180004129.01.T01:CDS | 30.0% | |
| ! | AATTAGGCTTTTAGTGTAAG+TGG | + | Chr1:73744439-73744458 | MsG0180004129.01.T01:intron | 30.0% |
| ! | GTTAAGGTATTTATCCAAAC+AGG | - | Chr1:73744504-73744523 | None:intergenic | 30.0% |
| ! | TTTTGTATCACTAAGACAGT+TGG | + | Chr1:73745178-73745197 | MsG0180004129.01.T01:intron | 30.0% |
| !!! | TTGTGATTTGTTTGTTTTGC+AGG | + | Chr1:73743983-73744002 | MsG0180004129.01.T01:intron | 30.0% |
| AAACCCTATAAACTCAGCTA+AGG | - | Chr1:73744949-73744968 | None:intergenic | 35.0% | |
| AACCCTATAAACTCAGCTAA+GGG | - | Chr1:73744948-73744967 | None:intergenic | 35.0% | |
| ACACAATAAGCTCCAAGTTA+AGG | - | Chr1:73744520-73744539 | None:intergenic | 35.0% | |
| ACCAACTTGAAACTTATGTG+TGG | - | Chr1:73744891-73744910 | None:intergenic | 35.0% | |
| ATCTCAACAAACCTCTTGAA+CGG | - | Chr1:73743812-73743831 | None:intergenic | 35.0% | |
| CAGATTAAGTCTGTTCAGAT+TGG | - | Chr1:73744811-73744830 | None:intergenic | 35.0% | |
| GAAAGCCTCTTGAAATTGAT+TGG | - | Chr1:73744041-73744060 | None:intergenic | 35.0% | |
| GATAGATGTGAAGAACAAGT+GGG | + | Chr1:73744247-73744266 | MsG0180004129.01.T01:intron | 35.0% | |
| GATTATGTTGGCCAAGATTA+AGG | + | Chr1:73744343-73744362 | MsG0180004129.01.T01:CDS | 35.0% | |
| GGTTATTATACGAGCTGTTA+TGG | + | Chr1:73744546-73744565 | MsG0180004129.01.T01:intron | 35.0% | |
| TGATAGATGTGAAGAACAAG+TGG | + | Chr1:73744246-73744265 | MsG0180004129.01.T01:intron | 35.0% | |
| TGATGTTATCGACCAAACTA+GGG | + | Chr1:73743889-73743908 | MsG0180004129.01.T01:CDS | 35.0% | |
| TGGAGCTTATTGTGTAAATG+TGG | + | Chr1:73744525-73744544 | MsG0180004129.01.T01:intron | 35.0% | |
| TTGATGTTATCGACCAAACT+AGG | + | Chr1:73743888-73743907 | MsG0180004129.01.T01:CDS | 35.0% | |
| ! | ACCACACATAAGTTTCAAGT+TGG | + | Chr1:73744887-73744906 | MsG0180004129.01.T01:intron | 35.0% |
| ! | AGAAATTAAGCAAATGGGCT+AGG | - | Chr1:73743954-73743973 | None:intergenic | 35.0% |
| ! | TCACCATTTTCGATTTTCTG+AGG | - | Chr1:73743711-73743730 | None:intergenic | 35.0% |
| !! | CTGCCCTTAATGATTTTGAT+AGG | + | Chr1:73744315-73744334 | MsG0180004129.01.T01:CDS | 35.0% |
| !! | TTCAAGAGGTTTGTTGAGAT+CGG | + | Chr1:73743812-73743831 | MsG0180004129.01.T01:CDS | 35.0% |
| !!! | CTTTTTAGTTAGGCCTTGTT+TGG | + | Chr1:73744405-73744424 | MsG0180004129.01.T01:intron | 35.0% |
| AACAATCAATTTCCTTCCCC+AGG | - | Chr1:73744282-73744301 | None:intergenic | 40.0% | |
| AAGCCCTTAGCTGAGTTTAT+AGG | + | Chr1:73744942-73744961 | MsG0180004129.01.T01:intron | 40.0% | |
| AGAGTTGCACTTGTCAACTA+TGG | + | Chr1:73743836-73743855 | MsG0180004129.01.T01:CDS | 40.0% | |
| AGCCCTTAGCTGAGTTTATA+GGG | + | Chr1:73744943-73744962 | MsG0180004129.01.T01:intron | 40.0% | |
| ATCAAGCAAGAAAGAGCTAG+AGG | + | Chr1:73745300-73745319 | MsG0180004129.01.T01:three_prime_UTR | 40.0% | |
| ATGAAGTAATGCCTAAGCAG+CGG | - | Chr1:73745096-73745115 | None:intergenic | 40.0% | |
| GAGCTCCAATCAATTTCAAG+AGG | + | Chr1:73744033-73744052 | MsG0180004129.01.T01:CDS | 40.0% | |
| GTCAACTATGGTCCAGATTA+TGG | + | Chr1:73743848-73743867 | MsG0180004129.01.T01:CDS | 40.0% | |
| GTGCCTCAGAAAATCGAAAA+TGG | + | Chr1:73743705-73743724 | MsG0180004129.01.T01:exon | 40.0% | |
| TTGACGAGATCCTTCTTCTT+GGG | - | Chr1:73744098-73744117 | None:intergenic | 40.0% | |
| TTTGACGAGATCCTTCTTCT+TGG | - | Chr1:73744099-73744118 | None:intergenic | 40.0% | |
| !! | CAAATGGGCTAGGATGAAAA+TGG | - | Chr1:73743944-73743963 | None:intergenic | 40.0% |
| !! | GAAAATGGGTTACCCTAGTT+TGG | - | Chr1:73743904-73743923 | None:intergenic | 40.0% |
| !! | TATAAGCTTTAGGGTCCGTT+TGG | + | Chr1:73744617-73744636 | MsG0180004129.01.T01:intron | 40.0% |
| !!! | CTTTTAAGTTAGGCCCTGTT+TGG | + | Chr1:73744487-73744506 | MsG0180004129.01.T01:intron | 40.0% |
| AATTCTACCTGCAGCTTCCA+TGG | - | Chr1:73744123-73744142 | None:intergenic | 45.0% | |
| ACAACGAGCTTGCCATAATC+TGG | - | Chr1:73743863-73743882 | None:intergenic | 45.0% | |
| CAAGAGAGTTCCCAAGAAGA+AGG | + | Chr1:73744085-73744104 | MsG0180004129.01.T01:CDS | 45.0% | |
| TCTTGTTGATGCACCTGACA+TGG | + | Chr1:73744007-73744026 | MsG0180004129.01.T01:CDS | 45.0% | |
| TCTTTGTTCAGCCGTTCAAG+AGG | + | Chr1:73743798-73743817 | MsG0180004129.01.T01:intron | 45.0% | |
| TTTCAATTTGTGCAGAGGGC+TGG | + | Chr1:73745035-73745054 | MsG0180004129.01.T01:intron | 45.0% | |
| ! | AACTCAGCTAAGGGCTTGTT+TGG | - | Chr1:73744939-73744958 | None:intergenic | 45.0% |
| ! | AGCTAAGGGCTTGTTTGGAT+TGG | - | Chr1:73744934-73744953 | None:intergenic | 45.0% |
| ATTGGAGCTCTCTCCATGTC+AGG | - | Chr1:73744023-73744042 | None:intergenic | 50.0% | |
| GAAGGATCTCGTCAAAGCCA+TGG | + | Chr1:73744103-73744122 | MsG0180004129.01.T01:CDS | 50.0% | |
| !! | GGCAAGAACTTGCTAAGCTG+AGG | + | Chr1:73745066-73745085 | MsG0180004129.01.T01:CDS | 50.0% |
| AAGTGGGAGAAGAGCTCCTG+GGG | + | Chr1:73744263-73744282 | MsG0180004129.01.T01:CDS | 55.0% | |
| ACAAGTGGGAGAAGAGCTCC+TGG | + | Chr1:73744261-73744280 | MsG0180004129.01.T01:CDS | 55.0% | |
| CAAGTGGGAGAAGAGCTCCT+GGG | + | Chr1:73744262-73744281 | MsG0180004129.01.T01:CDS | 55.0% | |
| GGCACTCGCAGCTGAAACAA+AGG | - | Chr1:73743690-73743709 | None:intergenic | 55.0% | |
| GTCAAAGCCATGGAAGCTGC+AGG | + | Chr1:73744113-73744132 | MsG0180004129.01.T01:CDS | 55.0% | |
| !! | TGCAGAGGGCTGGTGTTGTT+AGG | + | Chr1:73745045-73745064 | MsG0180004129.01.T01:intron | 55.0% |
| GCTGAGGAAGACCGCTGCTT+AGG | + | Chr1:73745082-73745101 | MsG0180004129.01.T01:CDS | 60.0% | |
| GGGAGAAGAGCTCCTGGGGA+AGG | + | Chr1:73744267-73744286 | MsG0180004129.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 73743674 | 73745451 | 73743674 | ID=MsG0180004129.01;Name=MsG0180004129.01 |
| Chr1 | mRNA | 73743674 | 73745451 | 73743674 | ID=MsG0180004129.01.T01;Parent=MsG0180004129.01;Name=MsG0180004129.01.T01;_AED=0.47;_eAED=0.47;_QI=50|1|1|1|0.4|0.5|6|272|133 |
| Chr1 | exon | 73743674 | 73743726 | 73743674 | ID=MsG0180004129.01.T01:exon:5355;Parent=MsG0180004129.01.T01 |
| Chr1 | exon | 73743809 | 73743910 | 73743809 | ID=MsG0180004129.01.T01:exon:5356;Parent=MsG0180004129.01.T01 |
| Chr1 | exon | 73744005 | 73744134 | 73744005 | ID=MsG0180004129.01.T01:exon:5357;Parent=MsG0180004129.01.T01 |
| Chr1 | exon | 73744252 | 73744364 | 73744252 | ID=MsG0180004129.01.T01:exon:5358;Parent=MsG0180004129.01.T01 |
| Chr1 | exon | 73745050 | 73745156 | 73745050 | ID=MsG0180004129.01.T01:exon:5359;Parent=MsG0180004129.01.T01 |
| Chr1 | exon | 73745233 | 73745451 | 73745233 | ID=MsG0180004129.01.T01:exon:5360;Parent=MsG0180004129.01.T01 |
| Chr1 | five_prime_UTR | 73743674 | 73743723 | 73743674 | ID=MsG0180004129.01.T01:five_prime_utr;Parent=MsG0180004129.01.T01 |
| Chr1 | CDS | 73743724 | 73743726 | 73743724 | ID=MsG0180004129.01.T01:cds;Parent=MsG0180004129.01.T01 |
| Chr1 | CDS | 73743809 | 73743910 | 73743809 | ID=MsG0180004129.01.T01:cds;Parent=MsG0180004129.01.T01 |
| Chr1 | CDS | 73744005 | 73744134 | 73744005 | ID=MsG0180004129.01.T01:cds;Parent=MsG0180004129.01.T01 |
| Chr1 | CDS | 73744252 | 73744364 | 73744252 | ID=MsG0180004129.01.T01:cds;Parent=MsG0180004129.01.T01 |
| Chr1 | CDS | 73745050 | 73745103 | 73745050 | ID=MsG0180004129.01.T01:cds;Parent=MsG0180004129.01.T01 |
| Chr1 | three_prime_UTR | 73745104 | 73745156 | 73745104 | ID=MsG0180004129.01.T01:three_prime_utr;Parent=MsG0180004129.01.T01 |
| Chr1 | three_prime_UTR | 73745233 | 73745451 | 73745233 | ID=MsG0180004129.01.T01:three_prime_utr;Parent=MsG0180004129.01.T01 |
| Gene Sequence |
| Protein sequence |
