AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003117.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003117.01.T01 MTR_1g054310 100.000 207 0 0 1 207 33 239 1.66e-153 425
MsG0180003117.01.T01 MTR_7g107380 97.000 200 4 1 8 207 9 206 9.40e-143 396
MsG0180003117.01.T01 MTR_0515s0010 89.744 78 8 0 44 121 3 80 6.35e-48 152
MsG0180003117.01.T01 MTR_0306s0010 89.744 78 8 0 44 121 3 80 6.35e-48 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003117.01.T01 AT2G37270 92.105 190 14 1 19 207 18 207 3.37e-130 365
MsG0180003117.01.T01 AT2G37270 92.105 190 14 1 19 207 18 207 3.37e-130 365
MsG0180003117.01.T01 AT3G11940 90.000 190 18 1 19 207 18 207 3.02e-128 360
MsG0180003117.01.T01 AT3G11940 90.000 190 18 1 19 207 18 207 3.02e-128 360
MsG0180003117.01.T01 ATCG01240 34.532 139 78 5 71 207 22 149 9.79e-11 58.5
MsG0180003117.01.T01 ATCG00900 34.532 139 78 5 71 207 22 149 9.79e-11 58.5

Find 60 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTGAATGATGGTTTA+TGG 0.240046 1:+56861777 MsG0180003117.01.T01:three_prime_UTR
CAGATTACTGATTTGTCTCT+TGG 0.294356 1:+56858972 MsG0180003117.01.T01:intron
CCATAAAACTTCATTAAATA+AGG 0.324325 1:-56861640 None:intergenic
GATACTCGAAGAAGCGATTC+AGG 0.345165 1:+56859051 MsG0180003117.01.T01:CDS
CAATGACCTGAATCGGGTTC+TGG 0.354972 1:-56859202 None:intergenic
AGCTTGACTTCGATCAGGTT+TGG 0.359219 1:-56858565 None:intergenic
CTGGAGCTTCGATGACGTTC+AGG 0.377509 1:+56858597 MsG0180003117.01.T01:CDS
TGGAACATATGTTGCATGTT+TGG 0.388336 1:-56859015 None:intergenic
AGATTACTGATTTGTCTCTT+GGG 0.391228 1:+56858973 MsG0180003117.01.T01:intron
GGATCTGAAACGACTGCAAC+AGG 0.391313 1:-56858544 None:intergenic
AACTGACCAGAACCCGATTC+AGG 0.391358 1:+56859196 MsG0180003117.01.T01:CDS
TAATTTGAATGATGGTTTAT+GGG 0.394565 1:+56861778 MsG0180003117.01.T01:three_prime_UTR
GCATCAACAATGACCTGAAT+CGG 0.397413 1:-56859209 None:intergenic
TAATATGATAATTTGAATGA+TGG 0.400451 1:+56861770 MsG0180003117.01.T01:three_prime_UTR
AATTGTCTTAATATTTCTAA+AGG 0.421513 1:-56861349 None:intergenic
GAAAGAAGCTTATGGCAGTT+AGG 0.436208 1:+56859138 MsG0180003117.01.T01:CDS
CGTGAAGATGCAACTCGTAT+TGG 0.440985 1:+56861228 MsG0180003117.01.T01:CDS
TTGTTGATGCTGTCGTCAAC+AGG 0.441734 1:+56859222 MsG0180003117.01.T01:CDS
AAGACTGAAGCTGCTGAGAA+TGG 0.444567 1:-56858392 None:intergenic
GCCATCTATCTTCTAACTAC+TGG 0.451088 1:+56861312 MsG0180003117.01.T01:CDS
GAACTTATTAATGCAGCAAA+AGG 0.453667 1:+56861390 MsG0180003117.01.T01:CDS
GAACAATGGAAAGAAGCTTA+TGG 0.464147 1:+56859130 MsG0180003117.01.T01:CDS
ACCAGTAGTTAGAAGATAGA+TGG 0.466476 1:-56861313 None:intergenic
TGAAGAGCTTGACTTCGATC+AGG 0.472581 1:-56858570 None:intergenic
GTTGCTAAGGCAAATCGTTA+AGG 0.480990 1:+56861572 MsG0180003117.01.T01:CDS
GCAACTCGTATTGGTTCTGC+TGG 0.481223 1:+56861237 MsG0180003117.01.T01:CDS
CAGCAAAAGGATCATCCAAC+AGG 0.484289 1:+56861403 MsG0180003117.01.T01:CDS
GATTACTGATTTGTCTCTTG+GGG 0.496398 1:+56858974 MsG0180003117.01.T01:intron
TAAGGAGCTTGTGGCAGCAT+TGG 0.502599 1:+56861590 MsG0180003117.01.T01:exon
AAGTCAAGCTCTTCAACCGC+TGG 0.503610 1:+56858578 MsG0180003117.01.T01:CDS
TGCTGAGAATGGAGAAGGTA+TGG 0.510821 1:-56858381 None:intergenic
TTGTCTCTTGGGGATTACAT+TGG 0.513322 1:+56858984 MsG0180003117.01.T01:CDS
TGAAATTGAAAGAGTTGCTA+AGG 0.514135 1:+56861559 MsG0180003117.01.T01:CDS
GGCTTGATTCACACGACGAA+GGG 0.519901 1:-56861292 None:intergenic
TGCTGGAGTTGTAAGAAGAC+AGG 0.532743 1:+56861254 MsG0180003117.01.T01:CDS
ACATATGTTCCACACACTGC+TGG 0.537649 1:+56859026 MsG0180003117.01.T01:CDS
TTAGTGAGCCTCTCAACAAT+GGG 0.543323 1:-56859086 None:intergenic
CATCAACAATGACCTGAATC+GGG 0.560268 1:-56859208 None:intergenic
CTAACTCTCTCATGATGCAT+GGG 0.561374 1:+56859105 MsG0180003117.01.T01:CDS
GTTAGTGAGCCTCTCAACAA+TGG 0.562680 1:-56859087 None:intergenic
ACTAACTCTCTCATGATGCA+TGG 0.563337 1:+56859104 MsG0180003117.01.T01:CDS
AACCGTGATTGTGGTGGATG+CGG 0.564962 1:-56858419 None:intergenic
ATGATGCATGGGAGGAACAA+TGG 0.566550 1:+56859116 MsG0180003117.01.T01:CDS
AGTTGTAAGAAGACAGGCTG+TGG 0.574582 1:+56861260 MsG0180003117.01.T01:CDS
TAACAAATGAATAATCTCCA+TGG 0.584701 1:-56859174 None:intergenic
TGCCGCATCCACCACAATCA+CGG 0.590840 1:+56858417 MsG0180003117.01.T01:five_prime_UTR
CTCAGTGTCCCATTGTTGAG+AGG 0.591866 1:+56859078 MsG0180003117.01.T01:CDS
GCAAATCGTTAAGGAGCTTG+TGG 0.593014 1:+56861581 MsG0180003117.01.T01:exon
TTCTTCAATGACATCAGCCA+TGG 0.596830 1:-56858521 None:intergenic
GAAGCTGCTGAGAATGGAGA+AGG 0.604330 1:-56858386 None:intergenic
TAGGATCATTAAGCATGCCA+TGG 0.604935 1:+56859157 MsG0180003117.01.T01:CDS
GAGTATCTACCAGCAGTGTG+TGG 0.639793 1:-56859035 None:intergenic
CAACGATAAAACAAAATCTG+AGG 0.644709 1:-56861615 None:intergenic
ACTCTCTCATGATGCATGGG+AGG 0.648954 1:+56859108 MsG0180003117.01.T01:CDS
TGAACGAACCGTGATTGTGG+TGG 0.652757 1:-56858425 None:intergenic
AAATGAACGAACCGTGATTG+TGG 0.654236 1:-56858428 None:intergenic
GAACGTCATCGAAGCTCCAG+CGG 0.655762 1:-56858594 None:intergenic
TGGCTTGATTCACACGACGA+AGG 0.656812 1:-56861293 None:intergenic
GCTTGATTCACACGACGAAG+GGG 0.665666 1:-56861291 None:intergenic
ATACGAGTTGCATCTTCACG+AGG 0.709806 1:-56861225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAACAAAAAATTAAC+TGG - Chr1:56859453-56859472 None:intergenic 10.0%
!!! TCTTTTTTTAAATTTTTTTC+TGG + Chr1:56859700-56859719 MsG0180003117.01.T01:intron 10.0%
!! AATTATGAAACAGTAATATT+TGG - Chr1:56861151-56861170 None:intergenic 15.0%
!! AATTGAAAATAAAAATGAAC+TGG - Chr1:56860557-56860576 None:intergenic 15.0%
!! ATTGAAAATAAAAATGAACT+GGG - Chr1:56860556-56860575 None:intergenic 15.0%
!! TAAATTCTAATTAGACATAT+TGG + Chr1:56859467-56859486 MsG0180003117.01.T01:intron 15.0%
!! TAATATGATAATTTGAATGA+TGG + Chr1:56861770-56861789 MsG0180003117.01.T01:three_prime_UTR 15.0%
!!! AATTGTCTTAATATTTCTAA+AGG - Chr1:56861352-56861371 None:intergenic 15.0%
!!! CAATGATTTTTTTTATTTTC+TGG + Chr1:56859325-56859344 MsG0180003117.01.T01:intron 15.0%
!!! CTTATTTAATGAAGTTTTAT+GGG + Chr1:56861641-56861660 MsG0180003117.01.T01:three_prime_UTR 15.0%
!!! GATATTTTTTTTTGTGTTTT+TGG + Chr1:56858767-56858786 MsG0180003117.01.T01:intron 15.0%
!!! GTTTTTTTAGTTCAATTAAT+TGG + Chr1:56858745-56858764 MsG0180003117.01.T01:intron 15.0%
!!! TAATATTAACTTTATTTAGC+TGG - Chr1:56860344-56860363 None:intergenic 15.0%
!!! TAATATTTCTATGTTTTTGA+TGG + Chr1:56859604-56859623 MsG0180003117.01.T01:intron 15.0%
!!! TATCATATTATAACTTTTGA+AGG - Chr1:56861760-56861779 None:intergenic 15.0%
!! AAAAAATTAACTGGAATGAT+AGG - Chr1:56859444-56859463 None:intergenic 20.0%
!! AAAAATGTAGTGATTAATGT+TGG + Chr1:56858929-56858948 MsG0180003117.01.T01:intron 20.0%
!! AATCATAATTTCATTCATTG+AGG - Chr1:56860871-56860890 None:intergenic 20.0%
!! AGTAATATTTGTTTCATAAC+AGG - Chr1:56861102-56861121 None:intergenic 20.0%
!! ATAATTTGAATGATGGTTTA+TGG + Chr1:56861777-56861796 MsG0180003117.01.T01:three_prime_UTR 20.0%
!! CATAAATAAACAATTGCAAT+TGG + Chr1:56859918-56859937 MsG0180003117.01.T01:intron 20.0%
!! CCATAAAACTTCATTAAATA+AGG - Chr1:56861643-56861662 None:intergenic 20.0%
!! GTTATCATAAATAAACACTT+TGG + Chr1:56859578-56859597 MsG0180003117.01.T01:intron 20.0%
!! TAATTATTGTGATTGTGATT+AGG + Chr1:56859673-56859692 MsG0180003117.01.T01:intron 20.0%
!! TAATTTGAATGATGGTTTAT+GGG + Chr1:56861778-56861797 MsG0180003117.01.T01:three_prime_UTR 20.0%
!! TAGAAATCAATCAGAAATAT+GGG + Chr1:56860200-56860219 MsG0180003117.01.T01:intron 20.0%
!! TTAGAAATCAATCAGAAATA+TGG + Chr1:56860199-56860218 MsG0180003117.01.T01:intron 20.0%
!! TTCAATTTATAACAAGACTT+TGG + Chr1:56860570-56860589 MsG0180003117.01.T01:intron 20.0%
!!! ATGAATAATTTGTTTCCTAT+TGG + Chr1:56860472-56860491 MsG0180003117.01.T01:intron 20.0%
!!! ATGAATATTTGTTTTCCTAT+TGG + Chr1:56860094-56860113 MsG0180003117.01.T01:intron 20.0%
!!! CCTTATTTAATGAAGTTTTA+TGG + Chr1:56861640-56861659 MsG0180003117.01.T01:three_prime_UTR 20.0%
!!! CTGTTTCATAATTTTGAATT+TGG + Chr1:56861158-56861177 MsG0180003117.01.T01:intron 20.0%
!!! TTTTATTTTCTGGTTTGATA+TGG + Chr1:56859335-56859354 MsG0180003117.01.T01:intron 20.0%
! ATCAAAACTCATGAAATGTA+AGG - Chr1:56860690-56860709 None:intergenic 25.0%
! ATGAATATTTGTTTCCCTAT+TGG + Chr1:56859744-56859763 MsG0180003117.01.T01:intron 25.0%
! ATTCTCGTGTATTTATTGTT+TGG + Chr1:56860050-56860069 MsG0180003117.01.T01:intron 25.0%
! ATTTGATGTTAAACCTACTT+TGG + Chr1:56860726-56860745 MsG0180003117.01.T01:intron 25.0%
! CATTACTAACGAAACATAAA+GGG - Chr1:56859509-56859528 None:intergenic 25.0%
! GAAACATAAAAGTTCATTAC+TGG - Chr1:56859828-56859847 None:intergenic 25.0%
! TAAAACAAATTGCATCATTC+TGG - Chr1:56859778-56859797 None:intergenic 25.0%
! TAACAAATGAATAATCTCCA+TGG - Chr1:56859177-56859196 None:intergenic 25.0%
! TCATTACTAACGAAACATAA+AGG - Chr1:56859510-56859529 None:intergenic 25.0%
! TGATATGTAAATAACAACCT+CGG - Chr1:56860986-56861005 None:intergenic 25.0%
! TGTTTAACTGTTGCAATTTA+TGG + Chr1:56861026-56861045 MsG0180003117.01.T01:intron 25.0%
! TTCTGTGATATCAGATTATT+TGG + Chr1:56858822-56858841 MsG0180003117.01.T01:intron 25.0%
!!! AATTTGGATCTGATTTGTTT+TGG + Chr1:56861174-56861193 MsG0180003117.01.T01:intron 25.0%
!!! ATGAATTTTTGTTTCCCTAT+TGG + Chr1:56859369-56859388 MsG0180003117.01.T01:intron 25.0%
!!! GATGTTTTTATGTACTTGTT+TGG + Chr1:56860420-56860439 MsG0180003117.01.T01:intron 25.0%
AAACGAAGAATGAGAAACAA+TGG - Chr1:56858491-56858510 None:intergenic 30.0%
AATACAAAATGCCATCATTC+TGG - Chr1:56860128-56860147 None:intergenic 30.0%
AATACAATTTGCCATCATTC+TGG - Chr1:56860506-56860525 None:intergenic 30.0%
AGAAACAATGGATACAGAAA+AGG - Chr1:56858479-56858498 None:intergenic 30.0%
CAACCACTTACAGTAATATT+TGG - Chr1:56860930-56860949 None:intergenic 30.0%
CAACGATAAAACAAAATCTG+AGG - Chr1:56861618-56861637 None:intergenic 30.0%
CACGAGATGAAAAAAATTCA+TGG - Chr1:56861469-56861488 None:intergenic 30.0%
CTATGCTTAAAAACCAAAGT+AGG - Chr1:56860742-56860761 None:intergenic 30.0%
GAACTTATTAATGCAGCAAA+AGG + Chr1:56861390-56861409 MsG0180003117.01.T01:CDS 30.0%
TAAAAATGAACTGGGAGATA+AGG - Chr1:56860548-56860567 None:intergenic 30.0%
TGAAATTGAAAGAGTTGCTA+AGG + Chr1:56861559-56861578 MsG0180003117.01.T01:CDS 30.0%
TTACTGGAATGATATGAGAA+TGG - Chr1:56859812-56859831 None:intergenic 30.0%
TTAGATACAAACAAATGACC+TGG - Chr1:56860179-56860198 None:intergenic 30.0%
TTCGTTAGTAATGATTGTTG+AGG + Chr1:56859516-56859535 MsG0180003117.01.T01:intron 30.0%
! AATGATGGTTTATGGGTTTT+TGG + Chr1:56861785-56861804 MsG0180003117.01.T01:three_prime_UTR 30.0%
! ACAGTTAAACACAACACTTT+TGG - Chr1:56861017-56861036 None:intergenic 30.0%
! ATGATTGGTTATTTCCCTAT+TGG + Chr1:56860794-56860813 MsG0180003117.01.T01:intron 30.0%
! ATTTGTAAAAGCATACCTGT+TGG - Chr1:56861421-56861440 None:intergenic 30.0%
! CAGTTAAACACAACACTTTT+GGG - Chr1:56861016-56861035 None:intergenic 30.0%
! TATGAATTGTGGATTGTTGA+TGG + Chr1:56859245-56859264 MsG0180003117.01.T01:intron 30.0%
! TTGCAATTTTCTTATCAAGC+AGG + Chr1:56860375-56860394 MsG0180003117.01.T01:intron 30.0%
!! AGATTACTGATTTGTCTCTT+GGG + Chr1:56858973-56858992 MsG0180003117.01.T01:intron 30.0%
!! ATTTATTGTTTGGCTTGGAA+TGG + Chr1:56860060-56860079 MsG0180003117.01.T01:intron 30.0%
!!! TATTTTCTGGTTTGATATGG+AGG + Chr1:56859338-56859357 MsG0180003117.01.T01:intron 30.0%
AACAAATGACCTGGAATGTT+AGG - Chr1:56860170-56860189 None:intergenic 35.0%
ACCAGTAGTTAGAAGATAGA+TGG - Chr1:56861316-56861335 None:intergenic 35.0%
AGAACAGTGACAATTGTAGT+TGG + Chr1:56860760-56860779 MsG0180003117.01.T01:intron 35.0%
ATACATAAATGCCATCATCC+AGG - Chr1:56860828-56860847 None:intergenic 35.0%
ATGACTAGTAATGACTGTTG+AGG + Chr1:56859855-56859874 MsG0180003117.01.T01:intron 35.0%
CGTGTATTTATTGTTTGGCT+TGG + Chr1:56860055-56860074 MsG0180003117.01.T01:intron 35.0%
GAACAATGGAAAGAAGCTTA+TGG + Chr1:56859130-56859149 MsG0180003117.01.T01:CDS 35.0%
GACATGTCAAGAAAAGCAAA+AGG - Chr1:56861080-56861099 None:intergenic 35.0%
GCACCAAATATTACTGTAAG+TGG + Chr1:56860924-56860943 MsG0180003117.01.T01:intron 35.0%
GTGTACGCAAACAAAAATCT+AGG - Chr1:56861676-56861695 None:intergenic 35.0%
TAACTGGAATGATAGGAGAA+TGG - Chr1:56859437-56859456 None:intergenic 35.0%
TATGGTATGTGATAAACCCT+AGG - Chr1:56858366-56858385 None:intergenic 35.0%
TGGAACATATGTTGCATGTT+TGG - Chr1:56859018-56859037 None:intergenic 35.0%
TTGGAGAATGACATGATGAT+TGG + Chr1:56860779-56860798 MsG0180003117.01.T01:intron 35.0%
! GTGTTTGTGAACTTTTTGTC+TGG + Chr1:56859979-56859998 MsG0180003117.01.T01:intron 35.0%
! TGTGAACTTTTTGTCTGGTT+TGG + Chr1:56859984-56860003 MsG0180003117.01.T01:intron 35.0%
!! CAGATTACTGATTTGTCTCT+TGG + Chr1:56858972-56858991 MsG0180003117.01.T01:intron 35.0%
!! GAAGGTTGATAATCAAACAC+AGG - Chr1:56861742-56861761 None:intergenic 35.0%
!! GATTACTGATTTGTCTCTTG+GGG + Chr1:56858974-56858993 MsG0180003117.01.T01:intron 35.0%
!! TCTATGTTTTTGATGGCTGT+AGG + Chr1:56859611-56859630 MsG0180003117.01.T01:intron 35.0%
!! TTCTGGTTTGATATCGAGAA+TGG + Chr1:56859717-56859736 MsG0180003117.01.T01:intron 35.0%
!!! ACTTTTTGTCTGGTTTGGAA+TGG + Chr1:56859989-56860008 MsG0180003117.01.T01:intron 35.0%
AAATGAACGAACCGTGATTG+TGG - Chr1:56858431-56858450 None:intergenic 40.0%
AAATGAACTGGGAGATAAGG+TGG - Chr1:56860545-56860564 None:intergenic 40.0%
ACAATTTGCCATCATTCTGG+CGG - Chr1:56860503-56860522 None:intergenic 40.0%
ACTAACTCTCTCATGATGCA+TGG + Chr1:56859104-56859123 MsG0180003117.01.T01:CDS 40.0%
ACTCTTGCAGTCAAACCAAT+AGG - Chr1:56859387-56859406 None:intergenic 40.0%
ATCCAGGCAATCAATCCAAT+AGG - Chr1:56860812-56860831 None:intergenic 40.0%
ATTCTGGCAGTCAAACCAAT+AGG - Chr1:56859762-56859781 None:intergenic 40.0%
CATCAACAATGACCTGAATC+GGG - Chr1:56859211-56859230 None:intergenic 40.0%
CCAACAACATCTTCTGCAAA+GGG - Chr1:56860646-56860665 None:intergenic 40.0%
CGAAGATTCGAAGAAACTGA+AGG - Chr1:56858454-56858473 None:intergenic 40.0%
CTAACTCTCTCATGATGCAT+GGG + Chr1:56859105-56859124 MsG0180003117.01.T01:CDS 40.0%
CTCTTGCAGTCAAACCAATA+GGG - Chr1:56859386-56859405 None:intergenic 40.0%
GAAAGAAGCTTATGGCAGTT+AGG + Chr1:56859138-56859157 MsG0180003117.01.T01:CDS 40.0%
GCATCAACAATGACCTGAAT+CGG - Chr1:56859212-56859231 None:intergenic 40.0%
GCCATCTATCTTCTAACTAC+TGG + Chr1:56861312-56861331 MsG0180003117.01.T01:CDS 40.0%
GTTGCTAAGGCAAATCGTTA+AGG + Chr1:56861572-56861591 MsG0180003117.01.T01:CDS 40.0%
TAGGATCATTAAGCATGCCA+TGG + Chr1:56859157-56859176 MsG0180003117.01.T01:CDS 40.0%
TATGTACTTGTTTGGCACTC+TGG + Chr1:56860428-56860447 MsG0180003117.01.T01:intron 40.0%
TCCAACAACATCTTCTGCAA+AGG - Chr1:56860647-56860666 None:intergenic 40.0%
TCCAGGCAATCAATCCAATA+GGG - Chr1:56860811-56860830 None:intergenic 40.0%
TCGTCAACAGGTATGAATTG+TGG + Chr1:56859234-56859253 MsG0180003117.01.T01:intron 40.0%
TTAGTGAGCCTCTCAACAAT+GGG - Chr1:56859089-56859108 None:intergenic 40.0%
TTCTGGCAGTCAAACCAATA+GGG - Chr1:56859761-56859780 None:intergenic 40.0%
TTCTTCAATGACATCAGCCA+TGG - Chr1:56858524-56858543 None:intergenic 40.0%
TTGTCTCTTGGGGATTACAT+TGG + Chr1:56858984-56859003 MsG0180003117.01.T01:CDS 40.0%
!! CGCTTGTGTCATTTGTATAG+TGG + Chr1:56861201-56861220 MsG0180003117.01.T01:intron 40.0%
!! TATTGTTTGGCTTGGAATGG+AGG + Chr1:56860063-56860082 MsG0180003117.01.T01:intron 40.0%
!! TTCTGGTTTGATATGGAGGA+TGG + Chr1:56859342-56859361 MsG0180003117.01.T01:intron 40.0%
!!! TTTTGTCTGGTTTGGAATGG+TGG + Chr1:56859992-56860011 MsG0180003117.01.T01:intron 40.0%
AAGACTGAAGCTGCTGAGAA+TGG - Chr1:56858395-56858414 None:intergenic 45.0%
ACATATGTTCCACACACTGC+TGG + Chr1:56859026-56859045 MsG0180003117.01.T01:CDS 45.0%
AGCTTGACTTCGATCAGGTT+TGG - Chr1:56858568-56858587 None:intergenic 45.0%
AGTTGTAAGAAGACAGGCTG+TGG + Chr1:56861260-56861279 MsG0180003117.01.T01:CDS 45.0%
ATACGAGTTGCATCTTCACG+AGG - Chr1:56861228-56861247 None:intergenic 45.0%
ATGATGCATGGGAGGAACAA+TGG + Chr1:56859116-56859135 MsG0180003117.01.T01:CDS 45.0%
ATGGAAGACTGCATGTGTAC+AGG - Chr1:56861450-56861469 None:intergenic 45.0%
ATTCTGGCGGTCAAACCAAT+AGG - Chr1:56860490-56860509 None:intergenic 45.0%
CAGCAAAAGGATCATCCAAC+AGG + Chr1:56861403-56861422 MsG0180003117.01.T01:CDS 45.0%
CCCTTTGCAGAAGATGTTGT+TGG + Chr1:56860643-56860662 MsG0180003117.01.T01:intron 45.0%
CGGAAAATACACAGCTAGCA+TGG - Chr1:56860966-56860985 None:intergenic 45.0%
CGTGAAGATGCAACTCGTAT+TGG + Chr1:56861228-56861247 MsG0180003117.01.T01:CDS 45.0%
GACCATTCTCCTAACATTCC+AGG + Chr1:56860158-56860177 MsG0180003117.01.T01:intron 45.0%
GACCTGGAATGTTAGGAGAA+TGG - Chr1:56860163-56860182 None:intergenic 45.0%
GATACTCGAAGAAGCGATTC+AGG + Chr1:56859051-56859070 MsG0180003117.01.T01:CDS 45.0%
GCAAATCGTTAAGGAGCTTG+TGG + Chr1:56861581-56861600 MsG0180003117.01.T01:exon 45.0%
GTTAGTGAGCCTCTCAACAA+TGG - Chr1:56859090-56859109 None:intergenic 45.0%
TCCCTATTGGATTGATTGCC+TGG + Chr1:56860807-56860826 MsG0180003117.01.T01:intron 45.0%
TGAAGAGCTTGACTTCGATC+AGG - Chr1:56858573-56858592 None:intergenic 45.0%
TGCTGAGAATGGAGAAGGTA+TGG - Chr1:56858384-56858403 None:intergenic 45.0%
TGCTGGAGTTGTAAGAAGAC+AGG + Chr1:56861254-56861273 MsG0180003117.01.T01:CDS 45.0%
TGGATTGATTGCCTGGATGA+TGG + Chr1:56860814-56860833 MsG0180003117.01.T01:intron 45.0%
TGGTTTGACTGCCAGAATGA+TGG + Chr1:56859764-56859783 MsG0180003117.01.T01:intron 45.0%
TTCGTTTCTCTATGCAGCCA+TGG + Chr1:56858504-56858523 MsG0180003117.01.T01:intron 45.0%
TTGTTGATGCTGTCGTCAAC+AGG + Chr1:56859222-56859241 MsG0180003117.01.T01:CDS 45.0%
! TGCTAGCTGTGTATTTTCCG+AGG + Chr1:56860966-56860985 MsG0180003117.01.T01:intron 45.0%
!! CTCTGGCTTGATTTGTAGGA+TGG + Chr1:56860445-56860464 MsG0180003117.01.T01:intron 45.0%
!!! GGTTTATGGGTTTTTGGCCT+AGG + Chr1:56861791-56861810 MsG0180003117.01.T01:three_prime_UTR 45.0%
!!! TTTTTTTTACATAAATTAAT+TGG + Chr1:56858882-56858901 MsG0180003117.01.T01:intron 5.0%
AACTGACCAGAACCCGATTC+AGG + Chr1:56859196-56859215 MsG0180003117.01.T01:CDS 50.0%
AAGTCAAGCTCTTCAACCGC+TGG + Chr1:56858578-56858597 MsG0180003117.01.T01:CDS 50.0%
ACTCTCTCATGATGCATGGG+AGG + Chr1:56859108-56859127 MsG0180003117.01.T01:CDS 50.0%
CAATGACCTGAATCGGGTTC+TGG - Chr1:56859205-56859224 None:intergenic 50.0%
CTCAGTGTCCCATTGTTGAG+AGG + Chr1:56859078-56859097 MsG0180003117.01.T01:CDS 50.0%
GAACTGGGAGATAAGGTGGA+TGG - Chr1:56860541-56860560 None:intergenic 50.0%
GAAGCTGCTGAGAATGGAGA+AGG - Chr1:56858389-56858408 None:intergenic 50.0%
GAGTATCTACCAGCAGTGTG+TGG - Chr1:56859038-56859057 None:intergenic 50.0%
GCTTGATTCACACGACGAAG+GGG - Chr1:56861294-56861313 None:intergenic 50.0%
GGCTTGATTCACACGACGAA+GGG - Chr1:56861295-56861314 None:intergenic 50.0%
TAAGGAGCTTGTGGCAGCAT+TGG + Chr1:56861590-56861609 MsG0180003117.01.T01:exon 50.0%
TGAACGAACCGTGATTGTGG+TGG - Chr1:56858428-56858447 None:intergenic 50.0%
TGGCTTGATTCACACGACGA+AGG - Chr1:56861296-56861315 None:intergenic 50.0%
TGGTTTGACCGCCAGAATGA+TGG + Chr1:56860492-56860511 MsG0180003117.01.T01:intron 50.0%
! GGATCTGAAACGACTGCAAC+AGG - Chr1:56858547-56858566 None:intergenic 50.0%
!! AACCGTGATTGTGGTGGATG+CGG - Chr1:56858422-56858441 None:intergenic 50.0%
!! GCAACTCGTATTGGTTCTGC+TGG + Chr1:56861237-56861256 MsG0180003117.01.T01:CDS 50.0%
!! GGCACTCTGGCTTGATTTGT+AGG + Chr1:56860441-56860460 MsG0180003117.01.T01:intron 50.0%
!! GTTTGGCTTGGAATGGAGGA+TGG + Chr1:56860067-56860086 MsG0180003117.01.T01:intron 50.0%
CTGGAGCTTCGATGACGTTC+AGG + Chr1:56858597-56858616 MsG0180003117.01.T01:CDS 55.0%
GAACGTCATCGAAGCTCCAG+CGG - Chr1:56858597-56858616 None:intergenic 55.0%
TGCCGCATCCACCACAATCA+CGG + Chr1:56858417-56858436 MsG0180003117.01.T01:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 56858366 56861810 56858366 ID=MsG0180003117.01;Name=MsG0180003117.01
Chr1 mRNA 56858366 56861810 56858366 ID=MsG0180003117.01.T01;Parent=MsG0180003117.01;Name=MsG0180003117.01.T01;_AED=0.44;_eAED=0.44;_QI=75|1|1|1|0.6|0.33|6|197|207
Chr1 exon 56858366 56858438 56858366 ID=MsG0180003117.01.T01:exon:15630;Parent=MsG0180003117.01.T01
Chr1 exon 56858521 56858618 56858521 ID=MsG0180003117.01.T01:exon:15631;Parent=MsG0180003117.01.T01
Chr1 exon 56858975 56859243 56858975 ID=MsG0180003117.01.T01:exon:15632;Parent=MsG0180003117.01.T01
Chr1 exon 56861221 56861424 56861221 ID=MsG0180003117.01.T01:exon:15633;Parent=MsG0180003117.01.T01
Chr1 exon 56861538 56861741 56861538 ID=MsG0180003117.01.T01:exon:15634;Parent=MsG0180003117.01.T01
Chr1 exon 56861763 56861810 56861763 ID=MsG0180003117.01.T01:exon:15635;Parent=MsG0180003117.01.T01
Chr1 five_prime_UTR 56858366 56858438 56858366 ID=MsG0180003117.01.T01:five_prime_utr;Parent=MsG0180003117.01.T01
Chr1 five_prime_UTR 56858521 56858522 56858521 ID=MsG0180003117.01.T01:five_prime_utr;Parent=MsG0180003117.01.T01
Chr1 CDS 56858523 56858618 56858523 ID=MsG0180003117.01.T01:cds;Parent=MsG0180003117.01.T01
Chr1 CDS 56858975 56859243 56858975 ID=MsG0180003117.01.T01:cds;Parent=MsG0180003117.01.T01
Chr1 CDS 56861221 56861424 56861221 ID=MsG0180003117.01.T01:cds;Parent=MsG0180003117.01.T01
Chr1 CDS 56861538 56861592 56861538 ID=MsG0180003117.01.T01:cds;Parent=MsG0180003117.01.T01
Chr1 three_prime_UTR 56861593 56861741 56861593 ID=MsG0180003117.01.T01:three_prime_utr;Parent=MsG0180003117.01.T01
Chr1 three_prime_UTR 56861763 56861810 56861763 ID=MsG0180003117.01.T01:three_prime_utr;Parent=MsG0180003117.01.T01
Gene Sequence

>MsG0180003117.01.T01

ATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTTTCAGATCCAAACCTGATCGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAACATGCAACATATGTTCCACACACTGCTGGTAGATACTCGAAGAAGCGATTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCAGTTAGGATCATTAAGCATGCCATGGAGATTATTCATTTGTTAACTGACCAGAACCCGATTCAGGTCATTGTTGATGCTGTCGTCAACAGTGGTCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCGCGTGAAGCAGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCTAAGGCAAATCGTTAA

Protein sequence

>MsG0180003117.01.T01

MADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*