AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036813.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036813.01.T01 MTR_7g020830 62.667 75 28 0 63 137 35 109 4.27e-29 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036813.01.T01 AT2G29540 56.452 62 27 0 56 117 45 106 3.98e-19 79.3
MsG0780036813.01.T01 AT2G29540 59.322 59 24 0 63 121 35 93 1.89e-18 77.0
MsG0780036813.01.T01 AT2G29540 59.322 59 24 0 63 121 35 93 1.89e-18 77.0

Find 27 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATGTTAGGAGCACTTT+TGG 0.284863 7:+14333540 MsG0780036813.01.T01:CDS
ATTGCTTCTAACAGACTTGC+TGG 0.342054 7:-14333585 None:intergenic
ACTGCTTCCAACAGACTTGC+TGG 0.364194 7:-14333627 None:intergenic
ACCCACAAAATGTCACTCTT+TGG 0.394982 7:-14332365 None:intergenic
GTTACCACTTACCAGTTGTC+TGG 0.401383 7:-14332430 None:intergenic
TAGTGAGTCGGATGATGATA+TGG 0.429703 7:+14333664 MsG0780036813.01.T01:CDS
TGCTTATGTGCAAGCATGTT+AGG 0.455656 7:+14333529 MsG0780036813.01.T01:CDS
AATGTCAGAGTCCAGACAAC+TGG 0.483345 7:+14332419 MsG0780036813.01.T01:CDS
TCATACGCAGGATCAAGAAA+AGG 0.488534 7:-14331967 None:intergenic
GGTGTTAAAAGATGGTTGTC+AGG 0.493371 7:+14333500 MsG0780036813.01.T01:CDS
TCTAAGAAAGGTGGTGTAGT+GGG 0.530713 7:-14330042 None:intergenic
GCAAGTGAGGTGTTAAAAGA+TGG 0.554457 7:+14333492 MsG0780036813.01.T01:CDS
GTCTAAGAAAGGTGGTGTAG+TGG 0.556157 7:-14330043 None:intergenic
CATACGCAGGATCAAGAAAA+GGG 0.558435 7:-14331966 None:intergenic
GATCTCGATTCTGTCTACCT+TGG 0.561517 7:+14331988 MsG0780036813.01.T01:CDS
GTTAAAACCAGCAAGTCTGT+TGG 0.570443 7:+14333620 MsG0780036813.01.T01:CDS
TGGTGTAGTGGGATACCTCA+TGG 0.587176 7:-14330031 None:intergenic
GCTTTAACGAAGTCTAAGAA+AGG 0.592512 7:-14330054 None:intergenic
CCCACATGAAACACATGGGA+AGG 0.600890 7:-14330076 None:intergenic
GCCTTCCCACATGAAACACA+TGG 0.602508 7:-14330081 None:intergenic
TGTTAGAAGCAATTCTGAGA+AGG 0.604343 7:+14333595 MsG0780036813.01.T01:CDS
TGTAGGGGATCCAGCAAGTG+AGG 0.610245 7:+14333479 MsG0780036813.01.T01:intron
TGAGAAGTCAGTTAGTGAGT+CGG 0.628461 7:+14333652 MsG0780036813.01.T01:CDS
TTAACGAAGTCTAAGAAAGG+TGG 0.657201 7:-14330051 None:intergenic
TCTGGACTCTGACATTAACA+CGG 0.671455 7:-14332412 None:intergenic
CCTTCCCACATGAAACACAT+GGG 0.702731 7:-14330080 None:intergenic
ACAGAATCGAGATCATACGC+AGG 0.723602 7:-14331979 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATAAAAAATAAAAA+AGG + Chr7:14332771-14332790 MsG0780036813.01.T01:intron 0.0%
!! TTGTTGTAAAAATAAAAAAA+TGG - Chr7:14332647-14332666 None:intergenic 10.0%
!!! CAAAATTTTATTTAAAAAAC+TGG + Chr7:14330640-14330659 MsG0780036813.01.T01:intron 10.0%
!!! TTTTAAATAAAATTTTGCTA+TGG - Chr7:14330637-14330656 None:intergenic 10.0%
!! AAAAATGTGAGATTATTAAT+GGG - Chr7:14330839-14330858 None:intergenic 15.0%
!! ATCAATTTCAGTTTATTATT+AGG + Chr7:14330309-14330328 MsG0780036813.01.T01:intron 15.0%
!! TAAAAATGTGAGATTATTAA+TGG - Chr7:14330840-14330859 None:intergenic 15.0%
!! TAATAATAAACTGAAATTGA+TGG - Chr7:14330310-14330329 None:intergenic 15.0%
!!! AAAATCTACCTATTTTATAA+AGG - Chr7:14333194-14333213 None:intergenic 15.0%
!! AGAATTGAGAGAAATATATA+GGG + Chr7:14331558-14331577 MsG0780036813.01.T01:intron 20.0%
!! ATTATAGTTATACCTTAATG+AGG - Chr7:14330706-14330725 None:intergenic 20.0%
!! GAATTAACTACTTAAAAAGT+TGG - Chr7:14332710-14332729 None:intergenic 20.0%
!! GATAAAAATATTAAAAGGCA+AGG + Chr7:14332986-14333005 MsG0780036813.01.T01:intron 20.0%
!! GCTAAAAATGATAAGAATTA+AGG - Chr7:14332308-14332327 None:intergenic 20.0%
!! TAATACGTGAAGAAAAAAAA+CGG + Chr7:14331262-14331281 MsG0780036813.01.T01:intron 20.0%
!! TAGAATTGAGAGAAATATAT+AGG + Chr7:14331557-14331576 MsG0780036813.01.T01:intron 20.0%
!! TATATTAAAAATGTGACACT+AGG + Chr7:14330858-14330877 MsG0780036813.01.T01:intron 20.0%
!! TTCATATAGAAATGAATTGT+AGG + Chr7:14332897-14332916 MsG0780036813.01.T01:intron 20.0%
!!! AAAAAGGAATTTTCAGTATT+AGG - Chr7:14332510-14332529 None:intergenic 20.0%
!!! ATGTTCTAAATTATCTAAAC+AGG + Chr7:14332732-14332751 MsG0780036813.01.T01:intron 20.0%
!!! TAAATAAAATTTTGCTATGG+TGG - Chr7:14330634-14330653 None:intergenic 20.0%
!!! TAAGTAGTTTGATCATTTTA+TGG - Chr7:14330341-14330360 None:intergenic 20.0%
!!! TAATTTCTGATTTTTGTTAC+TGG + Chr7:14330544-14330563 MsG0780036813.01.T01:intron 20.0%
!!! TCTAAATTTGTTCTCTTTTA+TGG + Chr7:14333100-14333119 MsG0780036813.01.T01:intron 20.0%
!!! TTTTTTTTCTTCACGTATTA+TGG - Chr7:14331262-14331281 None:intergenic 20.0%
! AGAAGATAAGAAAACTTCAT+TGG - Chr7:14332857-14332876 None:intergenic 25.0%
! ATCAGTAATTTCTCATGAAT+GGG + Chr7:14333439-14333458 MsG0780036813.01.T01:intron 25.0%
! CTAGATATATAGTATTTCAC+AGG + Chr7:14330580-14330599 MsG0780036813.01.T01:intron 25.0%
! CTCTATTCAAAGCTAATAAT+AGG - Chr7:14332687-14332706 None:intergenic 25.0%
! CTGTGAAATACTATATATCT+AGG - Chr7:14330582-14330601 None:intergenic 25.0%
! GATCAAACTACTTAAAAGTA+GGG + Chr7:14330347-14330366 MsG0780036813.01.T01:intron 25.0%
! TAAAGAAAATACACCCAAAT+TGG + Chr7:14331047-14331066 MsG0780036813.01.T01:intron 25.0%
! TATAGAAATGAATTGTAGGT+TGG + Chr7:14332901-14332920 MsG0780036813.01.T01:intron 25.0%
! TGATCAAACTACTTAAAAGT+AGG + Chr7:14330346-14330365 MsG0780036813.01.T01:intron 25.0%
! TGCTATCATTATATGTGAAT+TGG + Chr7:14333131-14333150 MsG0780036813.01.T01:intron 25.0%
! TGTCATAACAAAAAACAAAG+TGG + Chr7:14332012-14332031 MsG0780036813.01.T01:CDS 25.0%
! TTCAAAGCTAATAATAGGAA+CGG - Chr7:14332682-14332701 None:intergenic 25.0%
! TTGTCTAGCAAAATATGAAT+TGG - Chr7:14332566-14332585 None:intergenic 25.0%
!! AAGAGAACAAATTTAGAACA+TGG - Chr7:14333097-14333116 None:intergenic 25.0%
!! ATGAACTCTAAAAGGAAAAT+TGG + Chr7:14333161-14333180 MsG0780036813.01.T01:intron 25.0%
!! TAGGTAGATTTTCATTTTGT+TGG + Chr7:14333202-14333221 MsG0780036813.01.T01:intron 25.0%
!!! AGTTTTTTATGTCGTGAATT+TGG + Chr7:14331897-14331916 MsG0780036813.01.T01:intron 25.0%
!!! GTGTATTTTCTTTATTTTGG+TGG - Chr7:14331041-14331060 None:intergenic 25.0%
!!! TGGGTGTATTTTCTTTATTT+TGG - Chr7:14331044-14331063 None:intergenic 25.0%
AAAATGCCAAAGTTTCATGT+TGG - Chr7:14332170-14332189 None:intergenic 30.0%
AAACAAGCTTCTTGTCTTAA+TGG - Chr7:14330503-14330522 None:intergenic 30.0%
AAAGACTTTCGTTGTATTTG+TGG + Chr7:14333387-14333406 MsG0780036813.01.T01:intron 30.0%
AAGTGATTGGCGATTTAATT+TGG - Chr7:14331389-14331408 None:intergenic 30.0%
ACAGCAGATTACAAAACAAA+AGG - Chr7:14330907-14330926 None:intergenic 30.0%
AGAAATATATAGGGAAACAG+AGG + Chr7:14331567-14331586 MsG0780036813.01.T01:intron 30.0%
AGTCTAACATTGATACTCTT+AGG - Chr7:14332136-14332155 None:intergenic 30.0%
ATGAAAAAGCCAAGTTAAAC+CGG - Chr7:14332250-14332269 None:intergenic 30.0%
CAAGCATAAAAAGAGAAAAC+AGG + Chr7:14331592-14331611 MsG0780036813.01.T01:intron 30.0%
CAATCAGTTTGGCAATAAAA+AGG - Chr7:14330431-14330450 None:intergenic 30.0%
CATCAGTAATTTCTCATGAA+TGG + Chr7:14333438-14333457 MsG0780036813.01.T01:intron 30.0%
CTTGTGATTGCGATATAAAA+AGG - Chr7:14332526-14332545 None:intergenic 30.0%
GAGTAGCTCCTTTATAAAAT+AGG + Chr7:14333183-14333202 MsG0780036813.01.T01:intron 30.0%
GATAAGAATTAAGGAAGAAG+AGG - Chr7:14332299-14332318 None:intergenic 30.0%
GATCAACAATGAACTCTAAA+AGG + Chr7:14333153-14333172 MsG0780036813.01.T01:intron 30.0%
GTAGCTCATATTATAAATGC+CGG + Chr7:14332228-14332247 MsG0780036813.01.T01:intron 30.0%
TAATAACATGCACAATGGTT+TGG - Chr7:14333327-14333346 None:intergenic 30.0%
TATGGATGTGAATTACATGA+CGG + Chr7:14333028-14333047 MsG0780036813.01.T01:intron 30.0%
TCATAAATAGTCTAGCAGTT+TGG + Chr7:14330260-14330279 MsG0780036813.01.T01:intron 30.0%
TTCTTCACGTATTATGGTTA+GGG - Chr7:14331256-14331275 None:intergenic 30.0%
TTTCTTCACGTATTATGGTT+AGG - Chr7:14331257-14331276 None:intergenic 30.0%
! AACATGAAACTTTGGCATTT+TGG + Chr7:14332169-14332188 MsG0780036813.01.T01:intron 30.0%
! ACAAATCTGAAGCACTAATA+AGG + Chr7:14333247-14333266 MsG0780036813.01.T01:intron 30.0%
! ATAGCTTTTTGGATACATTG+TGG - Chr7:14332110-14332129 None:intergenic 30.0%
! CTCTTAGGATAATAGCTTTT+TGG - Chr7:14332121-14332140 None:intergenic 30.0%
! CTGTTTTCTCTTTTTATGCT+TGG - Chr7:14331594-14331613 None:intergenic 30.0%
! TTTTATGTCGTGAATTTGGT+AGG + Chr7:14331901-14331920 MsG0780036813.01.T01:intron 30.0%
!! AAAAAACAAAGTGGATTGTG+GGG + Chr7:14332021-14332040 MsG0780036813.01.T01:CDS 30.0%
!! ACAAAAAACAAAGTGGATTG+TGG + Chr7:14332019-14332038 MsG0780036813.01.T01:CDS 30.0%
!! CAAAAAACAAAGTGGATTGT+GGG + Chr7:14332020-14332039 MsG0780036813.01.T01:CDS 30.0%
!! TTATAAATGCCGGTTTAACT+TGG + Chr7:14332238-14332257 MsG0780036813.01.T01:intron 30.0%
!!! ATCCATGATTTGTTTTTGAG+GGG + Chr7:14331866-14331885 MsG0780036813.01.T01:intron 30.0%
!!! ATTTTGTTGGTTTAAACGTG+TGG + Chr7:14333215-14333234 MsG0780036813.01.T01:intron 30.0%
!!! GATCCATGATTTGTTTTTGA+GGG + Chr7:14331865-14331884 MsG0780036813.01.T01:intron 30.0%
!!! GTTTTTTGTTATGACAACCA+AGG - Chr7:14332008-14332027 None:intergenic 30.0%
!!! TTATTTGGAGTTTTTAGCTG+TGG + Chr7:14330937-14330956 MsG0780036813.01.T01:intron 30.0%
AAAACAAATCATGGATCCGA+AGG - Chr7:14331862-14331881 None:intergenic 35.0%
AAAAGAGAAAACAGGAACAG+AGG + Chr7:14331600-14331619 MsG0780036813.01.T01:intron 35.0%
AATTAAGGAAGAAGAGGAAG+AGG - Chr7:14332293-14332312 None:intergenic 35.0%
ACACAAGTGCGACATATATA+TGG + Chr7:14331006-14331025 MsG0780036813.01.T01:intron 35.0%
ACATGTCCAACATGAAACTT+TGG + Chr7:14332161-14332180 MsG0780036813.01.T01:intron 35.0%
ACGTGAAGAAAAAAAACGGT+AGG + Chr7:14331266-14331285 MsG0780036813.01.T01:intron 35.0%
ACGTTCATCATTCCTCATTA+AGG + Chr7:14330691-14330710 MsG0780036813.01.T01:intron 35.0%
AGACAACAACAATTCTCATC+AGG - Chr7:14332340-14332359 None:intergenic 35.0%
ATATCTCTCTGTATCTGTAG+GGG + Chr7:14333464-14333483 MsG0780036813.01.T01:intron 35.0%
CAAAAACCAGAGAAAACAGA+GGG + Chr7:14331631-14331650 MsG0780036813.01.T01:intron 35.0%
CATATCTCTCTGTATCTGTA+GGG + Chr7:14333463-14333482 MsG0780036813.01.T01:intron 35.0%
CATGAGAATTACGCTATCTA+AGG - Chr7:14330178-14330197 None:intergenic 35.0%
CGTCATAATAACATGCACAA+TGG - Chr7:14333332-14333351 None:intergenic 35.0%
CTTAGATAGCGTAATTCTCA+TGG + Chr7:14330176-14330195 MsG0780036813.01.T01:intron 35.0%
GCTTTAACGAAGTCTAAGAA+AGG - Chr7:14330057-14330076 None:intergenic 35.0%
GGAAGAAAAGAAAAACTGGT+AGG + Chr7:14331111-14331130 MsG0780036813.01.T01:intron 35.0%
TACGGGAAGAAAAGAAAAAC+TGG + Chr7:14331107-14331126 MsG0780036813.01.T01:intron 35.0%
TATATGCAGAAAAGCCTACA+AGG - Chr7:14333058-14333077 None:intergenic 35.0%
TATTATGGTTAGGGGTGATT+TGG - Chr7:14331247-14331266 None:intergenic 35.0%
TCATATCTCTCTGTATCTGT+AGG + Chr7:14333462-14333481 MsG0780036813.01.T01:intron 35.0%
TCTTCACGTATTATGGTTAG+GGG - Chr7:14331255-14331274 None:intergenic 35.0%
TTAACGAAGTCTAAGAAAGG+TGG - Chr7:14330054-14330073 None:intergenic 35.0%
TTCACATCCATACATACTTG+TGG - Chr7:14333020-14333039 None:intergenic 35.0%
! ACATTAACACGGTTTTCTGA+TGG - Chr7:14332404-14332423 None:intergenic 35.0%
! AGAAATGAATTGTAGGTTGG+TGG + Chr7:14332904-14332923 MsG0780036813.01.T01:intron 35.0%
! ATGAAACTTTGGCATTTTGG+AGG + Chr7:14332172-14332191 MsG0780036813.01.T01:intron 35.0%
! CATTGGTTGAAGAGAATAGT+AGG - Chr7:14332840-14332859 None:intergenic 35.0%
! GAATTTTCAGTATTAGGCTC+TGG - Chr7:14332504-14332523 None:intergenic 35.0%
! TCCAAAGAGTGACATTTTGT+GGG + Chr7:14332364-14332383 MsG0780036813.01.T01:CDS 35.0%
! TGAAACTTTGGCATTTTGGA+GGG + Chr7:14332173-14332192 MsG0780036813.01.T01:intron 35.0%
! TGTTAGAAGCAATTCTGAGA+AGG + Chr7:14333595-14333614 MsG0780036813.01.T01:CDS 35.0%
! TTTCTTTTCTTCCCGTATTC+TGG - Chr7:14331104-14331123 None:intergenic 35.0%
!!! ATTTTGCTATGGTGGATTCT+AGG - Chr7:14330626-14330645 None:intergenic 35.0%
!!! GCTGTGTTGTTTTGCTTATT+TGG + Chr7:14330922-14330941 MsG0780036813.01.T01:intron 35.0%
!!! GCTTTGTTTGTGTAGAGTTT+TGG - Chr7:14331810-14331829 None:intergenic 35.0%
!!! GGATCCATGATTTGTTTTTG+AGG + Chr7:14331864-14331883 MsG0780036813.01.T01:intron 35.0%
!!! GTTGGCTTGTTTTAAGTTCA+GGG - Chr7:14331210-14331229 None:intergenic 35.0%
!!! TGTTGGCTTGTTTTAAGTTC+AGG - Chr7:14331211-14331230 None:intergenic 35.0%
!!! TTGGCTTGTTTTAAGTTCAG+GGG - Chr7:14331209-14331228 None:intergenic 35.0%
!!! TTTGTTTTTGAGGGGTGATT+TGG + Chr7:14331874-14331893 MsG0780036813.01.T01:intron 35.0%
ACCCACAAAATGTCACTCTT+TGG - Chr7:14332368-14332387 None:intergenic 40.0%
AGAGGGAAAATGGCAAAAAC+AGG + Chr7:14331648-14331667 MsG0780036813.01.T01:intron 40.0%
AGGGAAAATGGCAAAAACAG+GGG + Chr7:14331650-14331669 MsG0780036813.01.T01:intron 40.0%
AGTGTAGGAAAGTAAACACG+AGG + Chr7:14331500-14331519 MsG0780036813.01.T01:intron 40.0%
ATTGCTTCTAACAGACTTGC+TGG - Chr7:14333588-14333607 None:intergenic 40.0%
CAACTGGTAAGTGGTAACAT+AGG + Chr7:14332435-14332454 MsG0780036813.01.T01:intron 40.0%
CACCCCTCAAAAACAAATCA+TGG - Chr7:14331871-14331890 None:intergenic 40.0%
CAGAGAAAACAGAGGGAAAA+TGG + Chr7:14331638-14331657 MsG0780036813.01.T01:intron 40.0%
CATACGCAGGATCAAGAAAA+GGG - Chr7:14331969-14331988 None:intergenic 40.0%
GAGGGAAAATGGCAAAAACA+GGG + Chr7:14331649-14331668 MsG0780036813.01.T01:intron 40.0%
GCAAAAACCAGAGAAAACAG+AGG + Chr7:14331630-14331649 MsG0780036813.01.T01:intron 40.0%
GCTCTGTCAATCAATCAGTT+TGG - Chr7:14330442-14330461 None:intergenic 40.0%
GGATACATTGTGGATGCAAA+GGG - Chr7:14332100-14332119 None:intergenic 40.0%
GGTGTTAAAAGATGGTTGTC+AGG + Chr7:14333500-14333519 MsG0780036813.01.T01:CDS 40.0%
GTTAAAACCAGCAAGTCTGT+TGG + Chr7:14333620-14333639 MsG0780036813.01.T01:CDS 40.0%
TAACATAGGCTGTCTCAGTT+TGG + Chr7:14332449-14332468 MsG0780036813.01.T01:intron 40.0%
TAGTGAGTCGGATGATGATA+TGG + Chr7:14333664-14333683 MsG0780036813.01.T01:CDS 40.0%
TCATACGCAGGATCAAGAAA+AGG - Chr7:14331970-14331989 None:intergenic 40.0%
TCGTGTTTACTTTCCTACAC+TGG - Chr7:14331501-14331520 None:intergenic 40.0%
TCTAAGAAAGGTGGTGTAGT+GGG - Chr7:14330045-14330064 None:intergenic 40.0%
TCTGGACTCTGACATTAACA+CGG - Chr7:14332415-14332434 None:intergenic 40.0%
TGAGAAGTCAGTTAGTGAGT+CGG + Chr7:14333652-14333671 MsG0780036813.01.T01:CDS 40.0%
TGAGCATCCACAAGTATGTA+TGG + Chr7:14333010-14333029 MsG0780036813.01.T01:intron 40.0%
TGCTTATGTGCAAGCATGTT+AGG + Chr7:14333529-14333548 MsG0780036813.01.T01:CDS 40.0%
TGGATACATTGTGGATGCAA+AGG - Chr7:14332101-14332120 None:intergenic 40.0%
! CATTTTCCCTCTGTTTTCTC+TGG - Chr7:14331640-14331659 None:intergenic 40.0%
! GCAAGTGAGGTGTTAAAAGA+TGG + Chr7:14333492-14333511 MsG0780036813.01.T01:CDS 40.0%
! GTCCAAAGAGTGACATTTTG+TGG + Chr7:14332363-14332382 MsG0780036813.01.T01:intron 40.0%
! TCTTTTAACACCTCACTTGC+TGG - Chr7:14333492-14333511 None:intergenic 40.0%
! TGAAATTGATGGTAGCTGCA+AGG - Chr7:14330299-14330318 None:intergenic 40.0%
!! ACGTTTTTCAGCTGCTGTTT+TGG - Chr7:14331151-14331170 None:intergenic 40.0%
!! GACGTTTTTCAGCTGTGTTT+GGG - Chr7:14331305-14331324 None:intergenic 40.0%
!! TGACGTTTTTCAGCTGTGTT+TGG - Chr7:14331306-14331325 None:intergenic 40.0%
!! TTGGCGATTTAATTTGGCTG+CGG - Chr7:14331383-14331402 None:intergenic 40.0%
!!! AAGCATGTTAGGAGCACTTT+TGG + Chr7:14333540-14333559 MsG0780036813.01.T01:CDS 40.0%
!!! AGCATGTTAGGAGCACTTTT+GGG + Chr7:14333541-14333560 MsG0780036813.01.T01:CDS 40.0%
!!! CTGTTTTGGTCTGAGTCTTT+TGG - Chr7:14331137-14331156 None:intergenic 40.0%
!!! TGGCTTGTTTTAAGTTCAGG+GGG - Chr7:14331208-14331227 None:intergenic 40.0%
!!! TTTGGCTGTTTTTGAGTGTG+TGG - Chr7:14331792-14331811 None:intergenic 40.0%
!!! TTTTTGAGTGTGTGGTGTGT+TGG - Chr7:14331784-14331803 None:intergenic 40.0%
AAGGAAGAAGAGGAAGAGGT+TGG - Chr7:14332289-14332308 None:intergenic 45.0%
AATGTCAGAGTCCAGACAAC+TGG + Chr7:14332419-14332438 MsG0780036813.01.T01:CDS 45.0%
ACACTACCAACCCATGTATC+AGG + Chr7:14331448-14331467 MsG0780036813.01.T01:intron 45.0%
ACAGAATCGAGATCATACGC+AGG - Chr7:14331982-14332001 None:intergenic 45.0%
ACGCTATCTAAGGAACCATG+TGG - Chr7:14330168-14330187 None:intergenic 45.0%
AGGAACTCGTTCCTGATACA+TGG - Chr7:14331462-14331481 None:intergenic 45.0%
AGGAAGAAGAGGAAGAGGTT+GGG - Chr7:14332288-14332307 None:intergenic 45.0%
AGTTCCTACGTAGGTTCGAT+TGG + Chr7:14331475-14331494 MsG0780036813.01.T01:intron 45.0%
ATCACCCCTAAGCCAGAATA+CGG + Chr7:14331089-14331108 MsG0780036813.01.T01:intron 45.0%
ATGACATGTCCTGACCAAGT+GGG + Chr7:14330116-14330135 MsG0780036813.01.T01:intron 45.0%
ATGGATCCGAAGGATTGAGT+CGG - Chr7:14331852-14331871 None:intergenic 45.0%
CCAATCACTTACTCCCATCA+GGG + Chr7:14331399-14331418 MsG0780036813.01.T01:intron 45.0%
CCTTCCCACATGAAACACAT+GGG - Chr7:14330083-14330102 None:intergenic 45.0%
CCTTCCCATGTGTTTCATGT+GGG + Chr7:14330076-14330095 MsG0780036813.01.T01:intron 45.0%
GATCTCGATTCTGTCTACCT+TGG + Chr7:14331988-14332007 MsG0780036813.01.T01:CDS 45.0%
GGAACTCGTTCCTGATACAT+GGG - Chr7:14331461-14331480 None:intergenic 45.0%
GTAGCTGCAAGGTTATCTTC+TGG - Chr7:14330288-14330307 None:intergenic 45.0%
GTCTAAGAAAGGTGGTGTAG+TGG - Chr7:14330046-14330065 None:intergenic 45.0%
GTTACCACTTACCAGTTGTC+TGG - Chr7:14332433-14332452 None:intergenic 45.0%
TACATGACGGTAGTCCTTGT+AGG + Chr7:14333041-14333060 MsG0780036813.01.T01:intron 45.0%
TATGACATGTCCTGACCAAG+TGG + Chr7:14330115-14330134 MsG0780036813.01.T01:intron 45.0%
TGTATTTCTCGTTGCGAGAG+CGG - Chr7:14330989-14331008 None:intergenic 45.0%
TGTGTTTGGGTCTCTGTCTT+TGG - Chr7:14331292-14331311 None:intergenic 45.0%
! CAGTTGATATCTCTCCCTGA+GGG - Chr7:14330480-14330499 None:intergenic 45.0%
!! ACACGGTTTTCTGATGGATG+AGG - Chr7:14332398-14332417 None:intergenic 45.0%
!! CACGGTTTTCTGATGGATGA+GGG - Chr7:14332397-14332416 None:intergenic 45.0%
!! GTGGGGCTTCTTTTGTTTAC+CGG + Chr7:14332038-14332057 MsG0780036813.01.T01:CDS 45.0%
!! TACATGGGTTGGTAGTGTCT+CGG - Chr7:14331446-14331465 None:intergenic 45.0%
!! TCTTCCCGTATTCTGGCTTA+GGG - Chr7:14331097-14331116 None:intergenic 45.0%
!! TGGCGATTTAATTTGGCTGC+GGG - Chr7:14331382-14331401 None:intergenic 45.0%
!! TGGGGCTTCTTTTGTTTACC+GGG + Chr7:14332039-14332058 MsG0780036813.01.T01:CDS 45.0%
!! TTCTTCCCGTATTCTGGCTT+AGG - Chr7:14331098-14331117 None:intergenic 45.0%
!!! GGCTTGTTTTAAGTTCAGGG+GGG - Chr7:14331207-14331226 None:intergenic 45.0%
!!! GGGTGGCTTGTTTTAGTTCA+GGG - Chr7:14331362-14331381 None:intergenic 45.0%
!!! GGTGGCTTGTTTTAGTTCAG+GGG - Chr7:14331361-14331380 None:intergenic 45.0%
!!! GTGGCTTGTTTTAGTTCAGG+GGG - Chr7:14331360-14331379 None:intergenic 45.0%
!!! TGGCTTGTTTTAGTTCAGGG+GGG - Chr7:14331359-14331378 None:intergenic 45.0%
!!! TGTTAGGAGCACTTTTGGGA+AGG + Chr7:14333545-14333564 MsG0780036813.01.T01:CDS 45.0%
!!! TTTTTGATAAAAATATTAAA+AGG + Chr7:14332981-14333000 MsG0780036813.01.T01:intron 5.0%
ACCAGAGTGAAGTCGAAGCA+CGG + Chr7:14331690-14331709 MsG0780036813.01.T01:intron 50.0%
ACTGCTTCCAACAGACTTGC+TGG - Chr7:14333630-14333649 None:intergenic 50.0%
ATCCGAAGGATTGAGTCGGT+AGG - Chr7:14331848-14331867 None:intergenic 50.0%
ATGTGGCCTCCCTAGATGAA+GGG - Chr7:14330151-14330170 None:intergenic 50.0%
CACGAGGACGTAACGTAACA+CGG + Chr7:14331516-14331535 MsG0780036813.01.T01:intron 50.0%
CATTGTGGATGCAAAGGGCA+TGG - Chr7:14332095-14332114 None:intergenic 50.0%
CCCACATGAAACACATGGGA+AGG - Chr7:14330079-14330098 None:intergenic 50.0%
CCCATGTGTTTCATGTGGGA+AGG + Chr7:14330080-14330099 MsG0780036813.01.T01:intron 50.0%
CCCTGATGGGAGTAAGTGAT+TGG - Chr7:14331402-14331421 None:intergenic 50.0%
CTCGTTCCTGATACATGGGT+TGG - Chr7:14331457-14331476 None:intergenic 50.0%
GAGTCCAGACAACTGGTAAG+TGG + Chr7:14332426-14332445 MsG0780036813.01.T01:intron 50.0%
GCCAATCACTTACTCCCATC+AGG + Chr7:14331398-14331417 MsG0780036813.01.T01:intron 50.0%
GCCTTCCCACATGAAACACA+TGG - Chr7:14330084-14330103 None:intergenic 50.0%
GCCTTCCCATGTGTTTCATG+TGG + Chr7:14330075-14330094 MsG0780036813.01.T01:intron 50.0%
GCTTCGACTTCACTCTGGTT+CGG - Chr7:14331689-14331708 None:intergenic 50.0%
TCACCCCTAAGCCAGAATAC+GGG + Chr7:14331090-14331109 MsG0780036813.01.T01:intron 50.0%
TCAGGAACGAGTTCCTACGT+AGG + Chr7:14331466-14331485 MsG0780036813.01.T01:intron 50.0%
TTGGCAAGGCTGGTGTTTGT+TGG - Chr7:14331228-14331247 None:intergenic 50.0%
! GCAGTTGATATCTCTCCCTG+AGG - Chr7:14330481-14330500 None:intergenic 50.0%
! TAGGTTCGATTGGCCAGTGT+AGG + Chr7:14331485-14331504 MsG0780036813.01.T01:intron 50.0%
! TGGTTAGGGGTGATTTGGCA+AGG - Chr7:14331242-14331261 None:intergenic 50.0%
! TTTTGCCCGTGCAAGACACA+CGG + Chr7:14330962-14330981 MsG0780036813.01.T01:intron 50.0%
!! CACCTACCGACTCAATCCTT+CGG + Chr7:14331843-14331862 MsG0780036813.01.T01:intron 50.0%
!! CGATTTAATTTGGCTGCGGG+TGG - Chr7:14331379-14331398 None:intergenic 50.0%
!! CTTCCCGTATTCTGGCTTAG+GGG - Chr7:14331096-14331115 None:intergenic 50.0%
!! CTTCTTTTGTTTACCGGGCG+GGG + Chr7:14332044-14332063 MsG0780036813.01.T01:CDS 50.0%
!! GCTTCTTTTGTTTACCGGGC+GGG + Chr7:14332043-14332062 MsG0780036813.01.T01:CDS 50.0%
!! GGCTTCTTTTGTTTACCGGG+CGG + Chr7:14332042-14332061 MsG0780036813.01.T01:CDS 50.0%
!! GTATTCTGGCTTAGGGGTGA+TGG - Chr7:14331090-14331109 None:intergenic 50.0%
!! GTGTTGGTAGCAAGGTAGTC+AGG - Chr7:14331768-14331787 None:intergenic 50.0%
!! TGTGTGGTGTGTTGGTAGCA+AGG - Chr7:14331776-14331795 None:intergenic 50.0%
!! TTCTTTTGTTTACCGGGCGG+GGG + Chr7:14332045-14332064 MsG0780036813.01.T01:CDS 50.0%
!!! CGGGTGGCTTGTTTTAGTTC+AGG - Chr7:14331363-14331382 None:intergenic 50.0%
ACATGTCCTGACCAAGTGGG+CGG + Chr7:14330119-14330138 MsG0780036813.01.T01:intron 55.0%
ACCGTGCTTCGACTTCACTC+TGG - Chr7:14331694-14331713 None:intergenic 55.0%
ATCTCTCCCTGAGGGATGAG+AGG - Chr7:14330472-14330491 None:intergenic 55.0%
CATGTGGCCTCCCTAGATGA+AGG - Chr7:14330152-14330171 None:intergenic 55.0%
CTGGCCAATCGAACCTACGT+AGG - Chr7:14331482-14331501 None:intergenic 55.0%
CTTCATCTAGGGAGGCCACA+TGG + Chr7:14330150-14330169 MsG0780036813.01.T01:intron 55.0%
GCGGGTGTTTCGGCCAATTT+GGG - Chr7:14331063-14331082 None:intergenic 55.0%
GTGAAGTCGAAGCACGGTTG+AGG + Chr7:14331696-14331715 MsG0780036813.01.T01:intron 55.0%
TGTAGGGGATCCAGCAAGTG+AGG + Chr7:14333479-14333498 MsG0780036813.01.T01:intron 55.0%
TGTGGCCTCCCTAGATGAAG+GGG - Chr7:14330150-14330169 None:intergenic 55.0%
TTTGCCCGTGCAAGACACAC+GGG + Chr7:14330963-14330982 MsG0780036813.01.T01:intron 55.0%
! GGGTTAGTGTTCCTTGTGCG+AGG - Chr7:14330819-14330838 None:intergenic 55.0%
! TAGGGGTGATTTGGCAAGGC+TGG - Chr7:14331238-14331257 None:intergenic 55.0%
!! GTTGGTAGTGTCTCGGCTTG+CGG - Chr7:14331439-14331458 None:intergenic 55.0%
!! TCTTTTGTTTACCGGGCGGG+GGG + Chr7:14332046-14332065 MsG0780036813.01.T01:CDS 55.0%
AATTGGCCGAAACACCCGCC+TGG + Chr7:14331064-14331083 MsG0780036813.01.T01:intron 60.0%
ATCGTGCGATCCTGCGTGCT+GGG + Chr7:14331735-14331754 MsG0780036813.01.T01:intron 60.0%
ATGTCCTGACCAAGTGGGCG+GGG + Chr7:14330121-14330140 MsG0780036813.01.T01:intron 60.0%
CATGTCCTGACCAAGTGGGC+GGG + Chr7:14330120-14330139 MsG0780036813.01.T01:intron 60.0%
CGGGGTTGCCCCTTCATCTA+GGG + Chr7:14330139-14330158 MsG0780036813.01.T01:intron 60.0%
GCTTCTGTGCACCTCGCACA+AGG + Chr7:14330805-14330824 MsG0780036813.01.T01:intron 60.0%
GGCGGGTGTTTCGGCCAATT+TGG - Chr7:14331064-14331083 None:intergenic 60.0%
GGTCAGGTCTCGTCCCTGAT+GGG - Chr7:14331415-14331434 None:intergenic 60.0%
GGTTGCCCCTTCATCTAGGG+AGG + Chr7:14330142-14330161 MsG0780036813.01.T01:intron 60.0%
TCCCTGAGGGATGAGAGGCA+GGG - Chr7:14330467-14330486 None:intergenic 60.0%
TGATGGCCAGGCGGGTGTTT+CGG - Chr7:14331073-14331092 None:intergenic 60.0%
!! GAAGCACGGTTGAGGTGCTG+TGG + Chr7:14331704-14331723 MsG0780036813.01.T01:intron 60.0%
AGAACCTCTTACCCCCCGCC+CGG - Chr7:14332060-14332079 None:intergenic 65.0%
AGCGGCCCGTGTGTCTTGCA+CGG - Chr7:14330971-14330990 None:intergenic 65.0%
AGGAACGAGTCCCAGCACGC+AGG - Chr7:14331748-14331767 None:intergenic 65.0%
CCCCTGCCTCTCATCCCTCA+GGG + Chr7:14330463-14330482 MsG0780036813.01.T01:intron 65.0%
CCCTGAGGGATGAGAGGCAG+GGG - Chr7:14330466-14330485 None:intergenic 65.0%
CCTGAGGGATGAGAGGCAGG+GGG - Chr7:14330465-14330484 None:intergenic 65.0%
CGGTCAGGTCTCGTCCCTGA+TGG - Chr7:14331416-14331435 None:intergenic 65.0%
CTCCCTGAGGGATGAGAGGC+AGG - Chr7:14330468-14330487 None:intergenic 65.0%
CTGAGGGATGAGAGGCAGGG+GGG - Chr7:14330464-14330483 None:intergenic 65.0%
GATCGTGCGATCCTGCGTGC+TGG + Chr7:14331734-14331753 MsG0780036813.01.T01:intron 65.0%
GCGGGGTTGCCCCTTCATCT+AGG + Chr7:14330138-14330157 MsG0780036813.01.T01:intron 65.0%
TTTACCGGGCGGGGGGTAAG+AGG + Chr7:14332053-14332072 MsG0780036813.01.T01:intron 65.0%
! CTGGCTTAGGGGTGATGGCC+AGG - Chr7:14331085-14331104 None:intergenic 65.0%
! CTTAGGGGTGATGGCCAGGC+GGG - Chr7:14331081-14331100 None:intergenic 65.0%
! GCTTAGGGGTGATGGCCAGG+CGG - Chr7:14331082-14331101 None:intergenic 65.0%
! GGTAGTGTCTCGGCTTGCGG+CGG - Chr7:14331436-14331455 None:intergenic 65.0%
AAGGGGCAACCCCGCCCACT+TGG - Chr7:14330133-14330152 None:intergenic 70.0%
CCCCCTGCCTCTCATCCCTC+AGG + Chr7:14330462-14330481 MsG0780036813.01.T01:intron 70.0%
GCAACCCCGCCCACTTGGTC+AGG - Chr7:14330128-14330147 None:intergenic 70.0%
GCGGCCCGTGTGTCTTGCAC+GGG - Chr7:14330970-14330989 None:intergenic 70.0%
! TGTCTCGGCTTGCGGCGGTC+AGG - Chr7:14331431-14331450 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 14330033 14333731 14330033 ID=MsG0780036813.01;Name=MsG0780036813.01
Chr7 mRNA 14330033 14333731 14330033 ID=MsG0780036813.01.T01;Parent=MsG0780036813.01;Name=MsG0780036813.01.T01;_AED=0.60;_eAED=0.82;_QI=0|0|0|0.75|1|1|4|0|169
Chr7 exon 14330033 14330093 14330033 ID=MsG0780036813.01.T01:exon:2218;Parent=MsG0780036813.01.T01
Chr7 exon 14331944 14332067 14331944 ID=MsG0780036813.01.T01:exon:2219;Parent=MsG0780036813.01.T01
Chr7 exon 14332364 14332440 14332364 ID=MsG0780036813.01.T01:exon:2220;Parent=MsG0780036813.01.T01
Chr7 exon 14333484 14333731 14333484 ID=MsG0780036813.01.T01:exon:2221;Parent=MsG0780036813.01.T01
Chr7 CDS 14330033 14330093 14330033 ID=MsG0780036813.01.T01:cds;Parent=MsG0780036813.01.T01
Chr7 CDS 14331944 14332067 14331944 ID=MsG0780036813.01.T01:cds;Parent=MsG0780036813.01.T01
Chr7 CDS 14332364 14332440 14332364 ID=MsG0780036813.01.T01:cds;Parent=MsG0780036813.01.T01
Chr7 CDS 14333484 14333731 14333484 ID=MsG0780036813.01.T01:cds;Parent=MsG0780036813.01.T01
Gene Sequence

>MsG0780036813.01.T01

ATGAGGTATCCCACTACACCACCTTTCTTAGACTTCGTTAAAGCCTTCCCATGTGTTTCATATCTCACTATTTATGATATTGACCCTTTTCTTGATCCTGCGTATGATCTCGATTCTGTCTACCTTGGTTGTCATAACAAAAAACAAAGTGGATTGTGGGGCTTCTTTTGTTTACCGGGCGGGGGTCCAAAGAGTGACATTTTGTGGGTACAGATCCCTCATCCATCAGAAAACCGTGTTAATGTCAGAGTCCAGACAACTGGGGATCCAGCAAGTGAGGTGTTAAAAGATGGTTGTCAGGATCTGATGCTTATGTGCAAGCATGTTAGGAGCACTTTTGGGAAGGCAGTAATGATTTTAAAACCAGCAAGTCTGTTAGAAGCAATTCTGAGAAGGCAGTTAAAACCAGCAAGTCTGTTGGAAGCAGTTCTGAGAAGTCAGTTAGTGAGTCGGATGATGATATGGATGAACGAACTTAATCTACAAGTTATAGTTTTGATTTTGAGTTAG

Protein sequence

>MsG0780036813.01.T01

MRYPTTPPFLDFVKAFPCVSYLTIYDIDPFLDPAYDLDSVYLGCHNKKQSGLWGFFCLPGGGPKSDILWVQIPHPSENRVNVRVQTTGDPASEVLKDGCQDLMLMCKHVRSTFGKAVMILKPASLLEAILRRQLKPASLLEAVLRSQLVSRMMIWMNELNLQVIVLILS*