AlfalfaGEDB | MsG0580028419.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028419.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028419.01.T01	GAU27760.1	77.171	403	85	4	1	399	1	400	0	628

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028419.01.T01	H2DH18	50.882	397	189	4	1	394	68	461	2.23E-136	405

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028419.01.T01	A0A2Z6MVM5	77.171	403	85	4	1	399	1	400	0.0	628

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0580028419.01	0.835601	1.526197e-56	1.875391e-53
MsG0080047884.01	MsG0580028419.01	0.830504	2.829258e-55	2.986454e-52
MsG0080048507.01	MsG0580028419.01	-0.821742	3.433932e-53	2.817639e-50
MsG0080048660.01	MsG0580028419.01	0.807303	5.399173e-50	2.996802e-47
MsG0080048727.01	MsG0580028419.01	0.829079	6.291976e-55	6.371694e-52
MsG0080048748.01	MsG0580028419.01	0.886839	2.411259e-72	1.750147e-68
MsG0080048773.01	MsG0580028419.01	0.830976	2.168621e-55	2.321271e-52
MsG0080048802.01	MsG0580028419.01	0.802846	4.622223e-49	2.287942e-46
MsG0080048820.01	MsG0580028419.01	0.816711	4.804154e-52	3.429569e-49
MsG0080048845.01	MsG0580028419.01	0.819999	8.647531e-53	6.759661e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028419.01.T01	MTR_5g070690	77.419	403	85	3	1	399	70	470	0.0	621
MsG0580028419.01.T01	MTR_5g070800	77.419	403	85	3	1	399	70	470	0.0	621
MsG0580028419.01.T01	MTR_5g070700	76.675	403	88	3	1	399	72	472	0.0	607
MsG0580028419.01.T01	MTR_5g070850	73.945	403	99	3	1	399	72	472	0.0	605
MsG0580028419.01.T01	MTR_5g070710	73.945	403	97	4	1	399	71	469	0.0	593
MsG0580028419.01.T01	MTR_5g070920	74.938	403	94	4	1	399	72	471	0.0	585
MsG0580028419.01.T01	MTR_5g470730	73.803	355	88	2	1	352	72	424	0.0	531
MsG0580028419.01.T01	MTR_5g070830	74.294	354	87	2	50	399	229	582	0.0	524
MsG0580028419.01.T01	MTR_6g084770	54.157	421	184	5	1	415	72	489	1.04e-152	444
MsG0580028419.01.T01	MTR_2g065360	43.627	408	212	7	1	399	42	440	3.67e-111	337

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028419.01.T01	AT3G48310	34.940	415	252	6	1	410	67	468	1.91e-83	266
MsG0580028419.01.T01	AT2G30770	36.658	401	235	8	1	393	68	457	8.92e-83	265
MsG0580028419.01.T01	AT3G26330	35.577	416	239	10	1	401	66	467	2.04e-82	264
MsG0580028419.01.T01	AT3G26310	35.252	417	247	8	1	405	65	470	1.46e-81	261
MsG0580028419.01.T01	AT4G13310	34.300	414	252	7	1	404	67	470	3.40e-80	258
MsG0580028419.01.T01	AT3G48270	33.654	416	256	8	1	410	66	467	9.65e-79	254
MsG0580028419.01.T01	AT3G26320	34.398	407	239	9	1	393	66	458	1.31e-78	254
MsG0580028419.01.T01	AT3G26280	37.288	413	228	12	1	395	67	466	1.38e-78	254
MsG0580028419.01.T01	AT3G48300	34.491	403	246	7	1	398	64	453	1.89e-78	253
MsG0580028419.01.T01	AT3G48300	34.491	403	246	7	1	398	66	455	1.99e-78	253

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Find 93 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATATAATCTCACCTA+GGG	0.558090	5:-80290780	None:intergenic
AAAGCAAGCGTTGGATGTTT+TGG	0.282959	5:+80286434	MsG0580028419.01.T01:CDS
AAATCTATACCGTTTGGTTC+TGG	0.347640	5:+80287716	MsG0580028419.01.T01:CDS
AACAAGTAAATCACTTGATG+AGG	0.576535	5:+80287130	MsG0580028419.01.T01:CDS
AACATGAAAATGAATTATGA+AGG	0.520560	5:+80287683	MsG0580028419.01.T01:CDS
AACATTAAGACTTTACCCTG+TGG	0.706162	5:+80287502	MsG0580028419.01.T01:CDS
AACATTGGCTAATCAATATC+GGG	0.502875	5:-80290951	None:intergenic
AATGAGATACAAAATGAAGT+AGG	0.531517	5:+80287413	MsG0580028419.01.T01:CDS
AATGTGTATAAGATGATACT+CGG	0.650024	5:+80286534	MsG0580028419.01.T01:CDS
ACAATTCAATCTCCAGCTGT+CGG	0.612927	5:+80290523	MsG0580028419.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGTAAATCACTTGATG+AGG	+	Chr5:80287130-80287149	MsG0580028419.01.T01:CDS	30.0%
AATCAAACCCAATTGAATTC+CGG	+	Chr5:80290141-80290160	MsG0580028419.01.T01:intron	30.0%
AGCCAACATTTAGTGTATTT+GGG	-	Chr5:80289823-80289842	None:intergenic	30.0%
AGCTTGTATAACAAGTAACT+TGG	+	Chr5:80289295-80289314	MsG0580028419.01.T01:intron	30.0%
ATCAAAATGGACGAGTATAT+TGG	+	Chr5:80286851-80286870	MsG0580028419.01.T01:intron	30.0%
ATCAAACACATTTGAATTCC+CGG	-	Chr5:80287755-80287774	None:intergenic	30.0%
ATCAACAAGATTAAAAGCTC+CGG	-	Chr5:80286619-80286638	None:intergenic	30.0%
ATTTGCGGTCAATAAAAGAA+TGG	-	Chr5:80290470-80290489	None:intergenic	30.0%
CATGAGTTATAGTAAATGCA+TGG	-	Chr5:80290303-80290322	None:intergenic	30.0%
GAAGTTTAGATACTTGGATA+TGG	+	Chr5:80287469-80287488	MsG0580028419.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80286183	80290960	80286183	ID=MsG0580028419.01;Name=MsG0580028419.01
Chr5	mRNA	80286183	80290960	80286183	ID=MsG0580028419.01.T01;Parent=MsG0580028419.01;Name=MsG0580028419.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|0.33\|0.25\|1\|1\|1\|4\|95\|478
Chr5	exon	80286183	80286675	80286183	ID=MsG0580028419.01.T01:exon:32870;Parent=MsG0580028419.01.T01
Chr5	exon	80287120	80287802	80287120	ID=MsG0580028419.01.T01:exon:32871;Parent=MsG0580028419.01.T01
Chr5	exon	80290521	80290596	80290521	ID=MsG0580028419.01.T01:exon:32872;Parent=MsG0580028419.01.T01
Chr5	exon	80290681	80290960	80290681	ID=MsG0580028419.01.T01:exon:32873;Parent=MsG0580028419.01.T01
Chr5	CDS	80286183	80286675	80286183	ID=MsG0580028419.01.T01:cds;Parent=MsG0580028419.01.T01
Chr5	CDS	80287120	80287802	80287120	ID=MsG0580028419.01.T01:cds;Parent=MsG0580028419.01.T01
Chr5	CDS	80290521	80290596	80290521	ID=MsG0580028419.01.T01:cds;Parent=MsG0580028419.01.T01
Chr5	CDS	80290681	80290865	80290681	ID=MsG0580028419.01.T01:cds;Parent=MsG0580028419.01.T01
Chr5	three_prime_UTR	80290866	80290960	80290866	ID=MsG0580028419.01.T01:three_prime_utr;Parent=MsG0580028419.01.T01

Gene Sequence

>MsG0580028419.01.T01

ATGTCCTTACAACTTGGTCAAGTTCCAACTATTGTTATTTCATCTTCAAAAGCTGCAGAATCATTCCTCAAAACTCATGACATTGACATCAATTTTGCAAGCCGACCAAAGACTCAAGGATCTGAGCTCATGTCAAATGGTGCCAAAGGGTTGGCTTTTTCTGAGTATGGTCCTTATTGGCATAGCGTGAGAAAACTTTCCACTTTAAAACTTCTTAATGATTCAAAAGTTGAGATGTTTGGTCCTGTTAGAAAGCAAGCGTTGGATGTTTTGGTTAAATCTTTGATGAAAGCTGCTTTAGTAGGTGAAGTTGTGAATGTTAGTGAGGCTGTACAGAATCTTATAGAGGAAAATGTGTATAAGATGATACTCGGTCGGAGTAAGTGTGAGCAATTTGACTTGAAGAAGTTGGTTCAAGAAGGGGTTACTTTGACCGGAGCTTTTAATCTTGTTGATTATGTTCCTTGGCTAGGAGCATTTGATATTCAGGTATCCTGCAAGAAAACAAGTAAATCACTTGATGAGGTGTTGGAGATGATAATATCCGAGCATGAACAAACTATTAATGTAGACAAAGTTTGTCATGAAGACTTCATAGACATACTACTCTCAATTAAGCACCAAACCATAGATCCAAAAAATGAACAGAAACATGTCATTGATCGACCAAACATTAAGGCAATTTTACTAGACATGGTTATGGCAGCAATTGAAACATCTGCTACCGCGATTGAATGGGCTTTATCTGAACTTTTAAGGAATCCAAGAGTGATGAAAAGCCTTCAAAATGAGATACAAAATGAAGTAGGAAATGAAAGAATGGTTGAAGAGAAAGATTTAAAGAAGTTTAGATACTTGGATATGGTGGTTGATGAAACATTAAGACTTTACCCTGTGGGACCCTTATTACTCCCTCGTGAATGTAGAGAGAGCATAACAATTGATGGTTATTTTATGAAGGAAAAGACACGAGTTATAGTAAATGCATGGACTATAGGGAGAGATTCTAATGTTTGGTCAGACAATGTTGAAGAATTCCATCCAGAAAGATTTATTAACATGAAAATGAATTATGAAGGACATGAGTTTAAATCTATACCGTTTGGTTCTGGTCGTAGACGTTGTCCGGGAATTCAAATGTGTTTGATCACAATTAAAATGGTTATAGCTCAATTGGTACAATTCAATCTCCAGCTGTCGGAGAAGGAGCAAGTTGATAGGGCAAAGGTTGTGCTTCCTTTTGAACACCAAGGAAATGGTGCACCGATTCAAATTTATGATGGTAGAAGATCCCTTGAAGAGAGCAGCAGTGAGGGGGCACCTCTTTCAAAGGGTAAAAAGGAGGACTCAGCCCTAGGTGAGATTATATATTTTCGTGATTCAGATGATGAGATGCCAGATTCTGATGAAGACCCAGATGATGATTTAGATATATGA

Protein sequence

>MsG0580028419.01.T01

MSLQLGQVPTIVISSSKAAESFLKTHDIDINFASRPKTQGSELMSNGAKGLAFSEYGPYWHSVRKLSTLKLLNDSKVEMFGPVRKQALDVLVKSLMKAALVGEVVNVSEAVQNLIEENVYKMILGRSKCEQFDLKKLVQEGVTLTGAFNLVDYVPWLGAFDIQVSCKKTSKSLDEVLEMIISEHEQTINVDKVCHEDFIDILLSIKHQTIDPKNEQKHVIDRPNIKAILLDMVMAAIETSATAIEWALSELLRNPRVMKSLQNEIQNEVGNERMVEEKDLKKFRYLDMVVDETLRLYPVGPLLLPRECRESITIDGYFMKEKTRVIVNAWTIGRDSNVWSDNVEEFHPERFINMKMNYEGHEFKSIPFGSGRRRCPGIQMCLITIKMVIAQLVQFNLQLSEKEQVDRAKVVLPFEHQGNGAPIQIYDGRRSLEESSSEGAPLSKGKKEDSALGEIIYFRDSDDEMPDSDEDPDDDLDI*