Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006829.01.T01 | XP_013462544.1 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 5.54E-178 | 499 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006829.01.T01 | Q9LET0 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 7.68E-30 | 114 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006829.01.T01 | A0A072V5E0 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 2.64e-178 | 499 |
Gene ID | Type | Classification |
---|---|---|
MsG0280006829.01.T01 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001108.01 | MsG0280006829.01 | 0.804032 | 2.624409e-49 | 1.339139e-46 |
MsG0280006829.01 | MsG0280007786.01 | 0.801290 | 9.654343e-49 | 4.593444e-46 |
MsG0280006829.01 | MsG0280009232.01 | 0.801940 | 7.103325e-49 | 3.435601e-46 |
MsG0280006829.01 | MsG0380018004.01 | 0.807988 | 3.862212e-50 | 2.182283e-47 |
MsG0280006829.01 | MsG0480018563.01 | 0.803699 | 3.078036e-49 | 1.557173e-46 |
MsG0280006829.01 | MsG0480020722.01 | 0.829272 | 5.648063e-55 | 5.753553e-52 |
MsG0280006829.01 | MsG0480021129.01 | 0.803202 | 3.901730e-49 | 1.948824e-46 |
MsG0280006829.01 | MsG0480021396.01 | 0.801712 | 7.912445e-49 | 3.804841e-46 |
MsG0280006829.01 | MsG0480023322.01 | 0.809145 | 2.187122e-50 | 1.274147e-47 |
MsG0280006829.01 | MsG0580024218.01 | 0.816873 | 4.419066e-52 | 3.168923e-49 |
MsG0280006829.01 | MsG0580024839.01 | 0.803232 | 3.846175e-49 | 1.922526e-46 |
MsG0280006829.01 | MsG0580025431.01 | 0.824563 | 7.541772e-54 | 6.704814e-51 |
MsG0280006829.01 | MsG0580025432.01 | 0.815119 | 1.088603e-51 | 7.439582e-49 |
MsG0280006829.01 | MsG0580025682.01 | 0.801661 | 8.104641e-49 | 3.892240e-46 |
MsG0280006829.01 | MsG0580026162.01 | 0.808489 | 3.020224e-50 | 1.729222e-47 |
MsG0280006829.01 | MsG0580027337.01 | 0.804416 | 2.183373e-49 | 1.125078e-46 |
MsG0280006829.01 | MsG0680030960.01 | 0.813582 | 2.379359e-51 | 1.559912e-48 |
MsG0280006829.01 | MsG0680031474.01 | 0.815365 | 9.595889e-52 | 6.602701e-49 |
MsG0280006829.01 | MsG0680034418.01 | 0.803429 | 3.501618e-49 | 1.759220e-46 |
MsG0280006829.01 | MsG0780037182.01 | 0.807193 | 5.695891e-50 | 3.152398e-47 |
MsG0280006829.01 | MsG0780038519.01 | 0.817210 | 3.710864e-52 | 2.685639e-49 |
MsG0280006829.01 | MsG0780038924.01 | 0.801421 | 9.075667e-49 | 4.332321e-46 |
MsG0280006829.01 | MsG0780039916.01 | 0.813711 | 2.229020e-51 | 1.466527e-48 |
MsG0280006829.01 | MsG0780039949.01 | 0.815604 | 8.492637e-52 | 5.882208e-49 |
MsG0280006829.01 | MsG0780040497.01 | 0.810610 | 1.058144e-50 | 6.407642e-48 |
MsG0280006829.01 | MsG0780041180.01 | 0.816622 | 5.029932e-52 | 3.582088e-49 |
MsG0280006829.01 | MsG0880042810.01 | 0.809235 | 2.091891e-50 | 1.221616e-47 |
MsG0280006829.01 | MsG0880045677.01 | 0.802828 | 4.662127e-49 | 2.306735e-46 |
MsG0280006829.01 | MsG0880046863.01 | 0.802301 | 5.987000e-49 | 2.922657e-46 |
MsG0280006829.01 | MsG0880047714.01 | 0.805736 | 1.155645e-49 | 6.161511e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006829.01.T01 | MTR_2g015890 | 94.922 | 256 | 13 | 0 | 1 | 256 | 1 | 256 | 0.0 | 499 |
MsG0280006829.01.T01 | MTR_2g015890 | 81.250 | 256 | 8 | 1 | 1 | 256 | 1 | 216 | 3.20e-146 | 407 |
MsG0280006829.01.T01 | MTR_2g015890 | 92.405 | 158 | 12 | 0 | 99 | 256 | 1 | 158 | 1.56e-105 | 302 |
MsG0280006829.01.T01 | MTR_4g087920 | 55.932 | 236 | 99 | 3 | 3 | 233 | 10 | 245 | 2.22e-71 | 220 |
MsG0280006829.01.T01 | MTR_2g015890 | 70.253 | 158 | 7 | 1 | 99 | 256 | 1 | 118 | 7.94e-70 | 211 |
MsG0280006829.01.T01 | MTR_4g079760 | 47.727 | 220 | 109 | 4 | 19 | 234 | 21 | 238 | 1.12e-53 | 174 |
MsG0280006829.01.T01 | MTR_2g091190 | 49.268 | 205 | 98 | 3 | 29 | 229 | 23 | 225 | 1.23e-52 | 171 |
MsG0280006829.01.T01 | MTR_3g070970 | 38.506 | 174 | 88 | 4 | 67 | 227 | 73 | 240 | 2.77e-28 | 108 |
MsG0280006829.01.T01 | MTR_1g093750 | 48.201 | 139 | 65 | 1 | 63 | 194 | 154 | 292 | 2.87e-28 | 110 |
MsG0280006829.01.T01 | MTR_5g032375 | 34.694 | 147 | 82 | 3 | 56 | 189 | 34 | 179 | 1.08e-17 | 79.3 |
MsG0280006829.01.T01 | MTR_5g066080 | 32.883 | 222 | 118 | 4 | 63 | 254 | 33 | 253 | 2.84e-17 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006829.01.T01 | AT3G56770 | 40.116 | 172 | 92 | 5 | 62 | 228 | 40 | 205 | 7.83e-31 | 114 |
MsG0280006829.01.T01 | AT2G40200 | 38.889 | 162 | 91 | 2 | 69 | 224 | 65 | 224 | 3.48e-30 | 113 |
MsG0280006829.01.T01 | AT1G68810 | 43.605 | 172 | 91 | 4 | 56 | 223 | 164 | 333 | 1.92e-28 | 111 |
MsG0280006829.01.T01 | AT2G41130 | 34.529 | 223 | 130 | 5 | 17 | 228 | 11 | 228 | 5.06e-27 | 105 |
MsG0280006829.01.T01 | AT3G25710 | 44.118 | 136 | 73 | 2 | 56 | 189 | 122 | 256 | 1.68e-24 | 100 |
MsG0280006829.01.T01 | AT4G38070 | 34.959 | 123 | 76 | 2 | 66 | 188 | 91 | 209 | 4.25e-17 | 78.6 |
Find 45 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGAACAATGTCAACTTAT+TGG | 0.161618 | 2:-6830256 | MsG0280006829.01.T01:CDS |
CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | 2:-6830555 | MsG0280006829.01.T01:CDS |
ATCAACAAACTCATTGGTTT+TGG | 0.255474 | 2:-6832216 | MsG0280006829.01.T01:CDS |
CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | 2:+6830391 | None:intergenic |
AAGTCCCCTCCAATAATTAA+TGG | 0.304566 | 2:-6832170 | MsG0280006829.01.T01:CDS |
TAGTAGCTCTGAAGAATCAT+AGG | 0.328548 | 2:-6832115 | MsG0280006829.01.T01:CDS |
AATGCCACTTCATATAGATT+TGG | 0.335342 | 2:-6832272 | MsG0280006829.01.T01:CDS |
AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | 2:-6832080 | MsG0280006829.01.T01:CDS |
TGATAAACTTCAACTACAAT+TGG | 0.375139 | 2:-6830359 | MsG0280006829.01.T01:CDS |
CCAGTACAGAACTCAGTTCC+TGG | 0.377817 | 2:+6830221 | None:intergenic |
AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | 2:-6830457 | MsG0280006829.01.T01:CDS |
AAGGGAAGAAATATCAACTT+TGG | 0.396844 | 2:-6830335 | MsG0280006829.01.T01:CDS |
AAATATCAACTTTGGGAGAC+AGG | 0.404598 | 2:-6830327 | MsG0280006829.01.T01:CDS |
TTCACTTCATCATCATCTGT+TGG | 0.414183 | 2:+6830478 | None:intergenic |
GTTTGTATCAACAAACTCAT+TGG | 0.426459 | 2:-6832222 | MsG0280006829.01.T01:CDS |
TTCTCTCCATTAATTATTGG+AGG | 0.433494 | 2:+6832164 | None:intergenic |
AGGGAAGAAATATCAACTTT+GGG | 0.445016 | 2:-6830334 | MsG0280006829.01.T01:CDS |
AACTTCAACTACAATTGGTA+AGG | 0.473092 | 2:-6830354 | MsG0280006829.01.T01:CDS |
CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | 2:-6830221 | MsG0280006829.01.T01:CDS |
ACTGAGTTCTGTACTGGAAA+GGG | 0.489265 | 2:-6830215 | MsG0280006829.01.T01:CDS |
CTCTCCATTAATTATTGGAG+GGG | 0.498785 | 2:+6832166 | None:intergenic |
TATTATACCTTTGGAGAGGA+GGG | 0.509382 | 2:+6832029 | None:intergenic |
ATTATAGCTCTGATATTTCG+AGG | 0.509996 | 2:-6832304 | MsG0280006829.01.T01:CDS |
CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | 2:-6832244 | MsG0280006829.01.T01:CDS |
TCTCTCCATTAATTATTGGA+GGG | 0.544195 | 2:+6832165 | None:intergenic |
TTATTATACCTTTGGAGAGG+AGG | 0.544800 | 2:+6832028 | None:intergenic |
AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | 2:-6830216 | MsG0280006829.01.T01:CDS |
AGTAGCTCTGAAGAATCATA+GGG | 0.557776 | 2:-6832114 | MsG0280006829.01.T01:CDS |
CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | 2:-6830563 | MsG0280006829.01.T01:CDS |
AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | 2:-6830511 | MsG0280006829.01.T01:CDS |
ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | 2:-6832036 | MsG0280006829.01.T01:intron |
GGAAAGGGTTTCTACCTCGA+TGG | 0.569167 | 2:-6830200 | MsG0280006829.01.T01:CDS |
AGCACCAAATCTATATGAAG+TGG | 0.573695 | 2:+6832268 | None:intergenic |
AATATCAACTTTGGGAGACA+GGG | 0.583527 | 2:-6830326 | MsG0280006829.01.T01:CDS |
TATTGGAAATAATGTTCACC+AGG | 0.592874 | 2:-6830239 | MsG0280006829.01.T01:CDS |
TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | 2:-6832245 | MsG0280006829.01.T01:CDS |
AGATTATTATACCTTTGGAG+AGG | 0.615783 | 2:+6832025 | None:intergenic |
ACTTCAACTACAATTGGTAA+GGG | 0.620942 | 2:-6830353 | MsG0280006829.01.T01:CDS |
ATCAACAAGAGCAAAACTCA+TGG | 0.629280 | 2:+6830113 | None:intergenic |
GTTGAACCATGTGAAAATGG+TGG | 0.637388 | 2:-6830454 | MsG0280006829.01.T01:CDS |
TGCATCTGTTTGCAAAGACG+TGG | 0.639661 | 2:+6830160 | None:intergenic |
GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | 2:+6832042 | None:intergenic |
GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | 2:-6832248 | MsG0280006829.01.T01:CDS |
AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | 2:-6832103 | MsG0280006829.01.T01:CDS |
TCTTAACGAGTAATCCATCG+AGG | 0.765808 | 2:+6830186 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTAAGGATTATTAAA+TGG | + | Chr2:6831597-6831616 | None:intergenic | 10.0% |
!!! | TTGTTTTTAAAATATTTTTG+TGG | - | Chr2:6830516-6830535 | MsG0280006829.01.T01:CDS | 10.0% |
!! | TATAAAAAATACGAAAAGAA+AGG | + | Chr2:6830424-6830443 | None:intergenic | 15.0% |
!!! | ACTTCGTTATATTTTTTTAA+GGG | - | Chr2:6830473-6830492 | MsG0280006829.01.T01:CDS | 15.0% |
!!! | ATTGTTATCTGATTTTAAAA+AGG | - | Chr2:6830631-6830650 | MsG0280006829.01.T01:intron | 15.0% |
!!! | TAGTATTAATTTATTTGTTG+TGG | - | Chr2:6831515-6831534 | MsG0280006829.01.T01:intron | 15.0% |
!!! | TTATAATGTTTAACTTTTGT+TGG | + | Chr2:6831147-6831166 | None:intergenic | 15.0% |
!! | AAACTGTAAAAAAGTTCAAT+TGG | + | Chr2:6830585-6830604 | None:intergenic | 20.0% |
!! | ACTATAATGTAACATCATAT+TGG | - | Chr2:6831260-6831279 | MsG0280006829.01.T01:intron | 20.0% |
!! | CTGAAAAAATACATTTACTT+AGG | - | Chr2:6830827-6830846 | MsG0280006829.01.T01:intron | 20.0% |
!! | TATGTACATACTGTTATTAA+TGG | - | Chr2:6831810-6831829 | MsG0280006829.01.T01:intron | 20.0% |
!! | TTTAAGGATTATTAAATGGT+TGG | + | Chr2:6831593-6831612 | None:intergenic | 20.0% |
!!! | ATTAATTTATTTGTTGTGGT+GGG | - | Chr2:6831519-6831538 | MsG0280006829.01.T01:intron | 20.0% |
!!! | CACTTCGTTATATTTTTTTA+AGG | - | Chr2:6830472-6830491 | MsG0280006829.01.T01:CDS | 20.0% |
!!! | TATTAATTTATTTGTTGTGG+TGG | - | Chr2:6831518-6831537 | MsG0280006829.01.T01:intron | 20.0% |
!!! | TTTTTCTCTCCATTAATTAT+TGG | + | Chr2:6830264-6830283 | None:intergenic | 20.0% |
! | AAATGAAACAACCTTAGTTT+GGG | + | Chr2:6831323-6831342 | None:intergenic | 25.0% |
! | AACATATGATTCTTAGTTGT+GGG | - | Chr2:6831369-6831388 | MsG0280006829.01.T01:intron | 25.0% |
! | AAGAGAAGAAACAGAATTAA+TGG | - | Chr2:6830342-6830361 | MsG0280006829.01.T01:CDS | 25.0% |
! | AAGGAAGATTATTATACCTT+TGG | + | Chr2:6830405-6830424 | None:intergenic | 25.0% |
! | ATTCCTAATTGCAACTTAAT+TGG | + | Chr2:6831022-6831041 | None:intergenic | 25.0% |
! | ATTGAACAATGTCAACTTAT+TGG | - | Chr2:6832166-6832185 | MsG0280006829.01.T01:CDS | 25.0% |
! | CTGATTTCTAATATGTGTTA+GGG | - | Chr2:6831673-6831692 | MsG0280006829.01.T01:intron | 25.0% |
! | TAAATGAAACAACCTTAGTT+TGG | + | Chr2:6831324-6831343 | None:intergenic | 25.0% |
! | TAACATATGATTCTTAGTTG+TGG | - | Chr2:6831368-6831387 | MsG0280006829.01.T01:intron | 25.0% |
! | TATGTGTTAGGGTTTAATAT+CGG | - | Chr2:6831684-6831703 | MsG0280006829.01.T01:intron | 25.0% |
! | TCTGATTTCTAATATGTGTT+AGG | - | Chr2:6831672-6831691 | MsG0280006829.01.T01:intron | 25.0% |
! | TGATAAACTTCAACTACAAT+TGG | - | Chr2:6832063-6832082 | MsG0280006829.01.T01:CDS | 25.0% |
AAAGTTGAACCATGTGAAAA+TGG | - | Chr2:6831965-6831984 | MsG0280006829.01.T01:intron | 30.0% | |
AACTTCAACTACAATTGGTA+AGG | - | Chr2:6832068-6832087 | MsG0280006829.01.T01:CDS | 30.0% | |
AAGGGAAGAAATATCAACTT+TGG | - | Chr2:6832087-6832106 | MsG0280006829.01.T01:CDS | 30.0% | |
AAGTCAACTATATAAGGTTG+TGG | - | Chr2:6831213-6831232 | MsG0280006829.01.T01:intron | 30.0% | |
AAGTTCAATTGGTAAACCAT+CGG | + | Chr2:6830574-6830593 | None:intergenic | 30.0% | |
ACACAATGATCGAATATGAT+TGG | + | Chr2:6830452-6830471 | None:intergenic | 30.0% | |
ACTTCAACTACAATTGGTAA+GGG | - | Chr2:6832069-6832088 | MsG0280006829.01.T01:CDS | 30.0% | |
AGGGAAGAAATATCAACTTT+GGG | - | Chr2:6832088-6832107 | MsG0280006829.01.T01:CDS | 30.0% | |
ATTGAAATTCATGCAGCATT+GGG | + | Chr2:6830939-6830958 | None:intergenic | 30.0% | |
ATTGATGGAAATACAAGCTA+TGG | - | Chr2:6830884-6830903 | MsG0280006829.01.T01:intron | 30.0% | |
GTTTGTATCAACAAACTCAT+TGG | - | Chr2:6830200-6830219 | MsG0280006829.01.T01:CDS | 30.0% | |
TATTGGAAATAATGTTCACC+AGG | - | Chr2:6832183-6832202 | MsG0280006829.01.T01:CDS | 30.0% | |
TCTCTCCATTAATTATTGGA+GGG | + | Chr2:6830260-6830279 | None:intergenic | 30.0% | |
TTCTCTCCATTAATTATTGG+AGG | + | Chr2:6830261-6830280 | None:intergenic | 30.0% | |
TTGATGGAAATACAAGCTAT+GGG | - | Chr2:6830885-6830904 | MsG0280006829.01.T01:intron | 30.0% | |
! | AATGCCACTTCATATAGATT+TGG | - | Chr2:6830150-6830169 | MsG0280006829.01.T01:CDS | 30.0% |
! | ACACCAATTAAGTTGCAATT+AGG | - | Chr2:6831016-6831035 | MsG0280006829.01.T01:intron | 30.0% |
! | AGATTATTATACCTTTGGAG+AGG | + | Chr2:6830400-6830419 | None:intergenic | 30.0% |
! | ATAAACATGTTTTACACCGA+TGG | - | Chr2:6830555-6830574 | MsG0280006829.01.T01:CDS | 30.0% |
! | CCTTATATAGTTGACTTTAG+CGG | + | Chr2:6831210-6831229 | None:intergenic | 30.0% |
! | TTGACTGGTCAAATGTATAT+GGG | - | Chr2:6831182-6831201 | MsG0280006829.01.T01:intron | 30.0% |
! | TTTTGCAGATTTATCTTCGA+TGG | - | Chr2:6831296-6831315 | MsG0280006829.01.T01:intron | 30.0% |
!! | ATTATAGCTCTGATATTTCG+AGG | - | Chr2:6830118-6830137 | MsG0280006829.01.T01:CDS | 30.0% |
!! | CAGAAAGAATGATTTGTTGA+GGG | + | Chr2:6831428-6831447 | None:intergenic | 30.0% |
!! | TCAGAAAGAATGATTTGTTG+AGG | + | Chr2:6831429-6831448 | None:intergenic | 30.0% |
!! | TCTGATTTTAAAAAGGCTAG+CGG | - | Chr2:6830638-6830657 | MsG0280006829.01.T01:intron | 30.0% |
!! | TGTTTAACTTTTGTTGGTGA+TGG | + | Chr2:6831141-6831160 | None:intergenic | 30.0% |
!!! | ATCAACAAACTCATTGGTTT+TGG | - | Chr2:6830206-6830225 | MsG0280006829.01.T01:CDS | 30.0% |
AAGTCCCCTCCAATAATTAA+TGG | - | Chr2:6830252-6830271 | MsG0280006829.01.T01:CDS | 35.0% | |
AATGCAGATGAAGCAAGTAA+AGG | - | Chr2:6831911-6831930 | MsG0280006829.01.T01:intron | 35.0% | |
ACAGAGACATTTGATATGCT+CGG | + | Chr2:6830717-6830736 | None:intergenic | 35.0% | |
AGCACCAAATCTATATGAAG+TGG | + | Chr2:6830157-6830176 | None:intergenic | 35.0% | |
AGCTGAAGTTTGAAGATTGA+TGG | - | Chr2:6830869-6830888 | MsG0280006829.01.T01:intron | 35.0% | |
CATATACATTTGACCAGTCA+AGG | + | Chr2:6831183-6831202 | None:intergenic | 35.0% | |
CATTGAAATTCATGCAGCAT+TGG | + | Chr2:6830940-6830959 | None:intergenic | 35.0% | |
CCGCTAAAGTCAACTATATA+AGG | - | Chr2:6831207-6831226 | MsG0280006829.01.T01:intron | 35.0% | |
CTCTCCATTAATTATTGGAG+GGG | + | Chr2:6830259-6830278 | None:intergenic | 35.0% | |
CTGTTATTAATGGTAGCTGA+TGG | - | Chr2:6831820-6831839 | MsG0280006829.01.T01:intron | 35.0% | |
CTTAGATCAGTTAGAAGTTC+TGG | + | Chr2:6832034-6832053 | None:intergenic | 35.0% | |
CTTTACTAGCTGAGGTTATT+AGG | - | Chr2:6831867-6831886 | MsG0280006829.01.T01:intron | 35.0% | |
GCTGATGGTATTCTTATAGA+TGG | - | Chr2:6831835-6831854 | MsG0280006829.01.T01:intron | 35.0% | |
TAACTTTACCTGACCAATGA+AGG | - | Chr2:6831557-6831576 | MsG0280006829.01.T01:intron | 35.0% | |
TATTAATAGCTGTCTACAGC+TGG | - | Chr2:6831457-6831476 | MsG0280006829.01.T01:intron | 35.0% | |
TCATTCAAAACGTAGGTCAT+AGG | + | Chr2:6831644-6831663 | None:intergenic | 35.0% | |
TGGTTGCTTAATTCCTTCAT+TGG | + | Chr2:6831573-6831592 | None:intergenic | 35.0% | |
TTAAATTAAGGGTCCTTGAC+TGG | - | Chr2:6831167-6831186 | MsG0280006829.01.T01:intron | 35.0% | |
TTCACTTCATCATCATCTGT+TGG | + | Chr2:6831947-6831966 | None:intergenic | 35.0% | |
! | AAATATCAACTTTGGGAGAC+AGG | - | Chr2:6832095-6832114 | MsG0280006829.01.T01:CDS | 35.0% |
! | AATATCAACTTTGGGAGACA+GGG | - | Chr2:6832096-6832115 | MsG0280006829.01.T01:CDS | 35.0% |
! | AATGATCCACCATTTTCACA+TGG | + | Chr2:6831977-6831996 | None:intergenic | 35.0% |
! | CTTGACTGGTCAAATGTATA+TGG | - | Chr2:6831181-6831200 | MsG0280006829.01.T01:intron | 35.0% |
! | TATTATACCTTTGGAGAGGA+GGG | + | Chr2:6830396-6830415 | None:intergenic | 35.0% |
! | TTATTATACCTTTGGAGAGG+AGG | + | Chr2:6830397-6830416 | None:intergenic | 35.0% |
!! | AGTAGCTCTGAAGAATCATA+GGG | - | Chr2:6830308-6830327 | MsG0280006829.01.T01:CDS | 35.0% |
!! | GTCATTTACGATGTCGATTT+CGG | - | Chr2:6831764-6831783 | MsG0280006829.01.T01:intron | 35.0% |
!! | TAGTAGCTCTGAAGAATCAT+AGG | - | Chr2:6830307-6830326 | MsG0280006829.01.T01:CDS | 35.0% |
!! | TGACCTACGTTTTGAATGAA+AGG | - | Chr2:6831645-6831664 | MsG0280006829.01.T01:intron | 35.0% |
!!! | TTGGTTTTGGATAGTGAGAA+AGG | - | Chr2:6830219-6830238 | MsG0280006829.01.T01:CDS | 35.0% |
AACTGAGTTCTGTACTGGAA+AGG | - | Chr2:6832206-6832225 | MsG0280006829.01.T01:CDS | 40.0% | |
ACATCACCAGCTGAATATTC+TGG | - | Chr2:6831402-6831421 | MsG0280006829.01.T01:intron | 40.0% | |
ACGCCTTTCATTCAAAACGT+AGG | + | Chr2:6831651-6831670 | None:intergenic | 40.0% | |
ACTGAGTTCTGTACTGGAAA+GGG | - | Chr2:6832207-6832226 | MsG0280006829.01.T01:CDS | 40.0% | |
CAAAGCAACTTTACTAGCTG+AGG | - | Chr2:6831859-6831878 | MsG0280006829.01.T01:intron | 40.0% | |
CAAATGAGACTTCAAGAGGT+GGG | - | Chr2:6830178-6830197 | MsG0280006829.01.T01:CDS | 40.0% | |
CAGAGACATTTGATATGCTC+GGG | + | Chr2:6830716-6830735 | None:intergenic | 40.0% | |
GCTTAATTCCTTCATTGGTC+AGG | + | Chr2:6831568-6831587 | None:intergenic | 40.0% | |
GCTTCAAATGAGACTTCAAG+AGG | - | Chr2:6830174-6830193 | MsG0280006829.01.T01:CDS | 40.0% | |
GTTGAACCATGTGAAAATGG+TGG | - | Chr2:6831968-6831987 | MsG0280006829.01.T01:intron | 40.0% | |
TCAAATGAGACTTCAAGAGG+TGG | - | Chr2:6830177-6830196 | MsG0280006829.01.T01:CDS | 40.0% | |
TCTTAACGAGTAATCCATCG+AGG | + | Chr2:6832239-6832258 | None:intergenic | 40.0% | |
!! | ACAATAAGTGCTGAGAAGCA+AGG | - | Chr2:6830669-6830688 | MsG0280006829.01.T01:intron | 40.0% |
AGAATCATAGGGAAGCAGAG+AGG | - | Chr2:6830319-6830338 | MsG0280006829.01.T01:CDS | 45.0% | |
TACAAGCTATGGGACAGAAC+TGG | - | Chr2:6830895-6830914 | MsG0280006829.01.T01:intron | 45.0% | |
TCTTCGATGGTCCCAAACTA+AGG | - | Chr2:6831309-6831328 | MsG0280006829.01.T01:intron | 45.0% | |
TGCATCTGTTTGCAAAGACG+TGG | + | Chr2:6832265-6832284 | None:intergenic | 45.0% | |
!! | AAAAAATAAATAAATAAGAT+AGG | - | Chr2:6831610-6831629 | MsG0280006829.01.T01:intron | 5.0% |
!! | AAACATTATAATTAAATTAA+GGG | - | Chr2:6831156-6831175 | MsG0280006829.01.T01:intron | 5.0% |
!! | TAAACATTATAATTAAATTA+AGG | - | Chr2:6831155-6831174 | MsG0280006829.01.T01:intron | 5.0% |
!!! | TCTTATTTATTTATTTTTTA+AGG | + | Chr2:6831609-6831628 | None:intergenic | 5.0% |
ACTTGTTCCCTCCTCTCCAA+AGG | - | Chr2:6830386-6830405 | MsG0280006829.01.T01:CDS | 50.0% | |
CCAGGAACTGAGTTCTGTAC+TGG | - | Chr2:6832201-6832220 | MsG0280006829.01.T01:CDS | 50.0% | |
CCAGTACAGAACTCAGTTCC+TGG | + | Chr2:6832204-6832223 | None:intergenic | 50.0% | |
GGAAAGGGTTTCTACCTCGA+TGG | - | Chr2:6832222-6832241 | MsG0280006829.01.T01:CDS | 50.0% | |
TGAGGGCCAGAATATTCAGC+TGG | + | Chr2:6831411-6831430 | None:intergenic | 50.0% | |
! | CAGCTGGTGATGTGAAGTGT+GGG | + | Chr2:6831395-6831414 | None:intergenic | 50.0% |
! | TCAGCTGGTGATGTGAAGTG+TGG | + | Chr2:6831396-6831415 | None:intergenic | 50.0% |
GAGAGGAGGGAACAAGTGCA+CGG | + | Chr2:6830383-6830402 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 6830114 | 6832330 | 6830114 | ID=MsG0280006829.01;Name=MsG0280006829.01 |
Chr2 | mRNA | 6830114 | 6832330 | 6830114 | ID=MsG0280006829.01.T01;Parent=MsG0280006829.01;Name=MsG0280006829.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|256 |
Chr2 | exon | 6832037 | 6832330 | 6832037 | ID=MsG0280006829.01.T01:exon:2887;Parent=MsG0280006829.01.T01 |
Chr2 | exon | 6830114 | 6830590 | 6830114 | ID=MsG0280006829.01.T01:exon:2886;Parent=MsG0280006829.01.T01 |
Chr2 | CDS | 6832037 | 6832330 | 6832037 | ID=MsG0280006829.01.T01:cds;Parent=MsG0280006829.01.T01 |
Chr2 | CDS | 6830114 | 6830590 | 6830114 | ID=MsG0280006829.01.T01:cds;Parent=MsG0280006829.01.T01 |
Gene Sequence |
Protein sequence |