AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021129.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021129.01.T01 MTR_4g066460 80.696 316 23 5 34 320 23 329 1.59e-174 486
MsG0480021129.01.T01 MTR_4g066380 84.106 302 30 3 34 317 22 323 2.30e-173 484
MsG0480021129.01.T01 MTR_4g067010 78.387 310 27 4 34 317 23 318 1.68e-171 479
MsG0480021129.01.T01 MTR_6g047570 60.815 319 97 6 30 320 18 336 5.42e-122 353
MsG0480021129.01.T01 MTR_0011s0260 55.114 352 86 8 30 319 18 359 2.90e-109 322
MsG0480021129.01.T01 MTR_0011s0210 55.524 353 85 7 30 320 18 360 9.29e-109 321
MsG0480021129.01.T01 MTR_0250s0040 58.586 297 80 7 35 320 1 265 4.07e-105 308
MsG0480021129.01.T01 MTR_0246s0020 57.322 239 83 4 100 320 142 379 5.99e-81 251
MsG0480021129.01.T01 MTR_0246s0050 48.438 320 126 10 37 320 5 321 5.69e-79 243
MsG0480021129.01.T01 MTR_4g098035 48.438 320 126 10 37 320 26 342 9.44e-79 244
MsG0480021129.01.T01 MTR_0246s0020 52.381 231 89 5 100 312 142 369 4.71e-66 212
MsG0480021129.01.T01 MTR_5g014520 44.932 296 123 7 57 319 45 333 5.13e-61 198
MsG0480021129.01.T01 MTR_6g047550 52.358 212 69 6 30 209 18 229 1.55e-53 177
MsG0480021129.01.T01 MTR_5g014560 41.830 306 143 12 30 319 21 307 2.56e-53 177
MsG0480021129.01.T01 MTR_4g009540 41.667 204 98 6 134 316 128 331 1.22e-41 147
MsG0480021129.01.T01 MTR_5g014600 41.014 217 100 3 127 315 118 334 1.99e-41 147
MsG0480021129.01.T01 MTR_4g097920 39.130 207 110 4 119 314 108 309 9.97e-40 142
MsG0480021129.01.T01 MTR_4g097920 39.130 207 110 4 119 314 123 324 1.64e-39 142
MsG0480021129.01.T01 MTR_2g010450 42.703 185 93 2 146 317 168 352 2.22e-39 142
MsG0480021129.01.T01 MTR_8g009020 39.175 194 101 2 140 316 130 323 4.47e-39 140
MsG0480021129.01.T01 MTR_4g097940 38.647 207 111 4 119 314 123 324 1.46e-38 139
MsG0480021129.01.T01 MTR_4g092700 39.614 207 103 3 127 317 132 332 1.73e-38 139
MsG0480021129.01.T01 MTR_4g097950 45.405 185 84 4 150 317 67 251 3.05e-38 136
MsG0480021129.01.T01 MTR_4g009110 37.872 235 120 7 104 316 120 350 4.06e-38 139
MsG0480021129.01.T01 MTR_2g104550 39.216 204 112 3 128 319 112 315 6.51e-38 137
MsG0480021129.01.T01 MTR_2g104490 35.573 253 142 6 71 314 66 306 5.02e-37 135
MsG0480021129.01.T01 MTR_2g104650 39.344 244 118 9 90 313 33 266 6.42e-37 134
MsG0480021129.01.T01 MTR_5g014640 35.749 207 105 4 128 315 126 323 1.35e-35 131
MsG0480021129.01.T01 MTR_2g104560 38.421 190 105 5 139 317 38 226 2.53e-33 123
MsG0480021129.01.T01 MTR_4g009540 40.984 183 87 6 134 295 128 310 2.66e-33 125
MsG0480021129.01.T01 MTR_7g080780 37.864 206 124 3 112 316 114 316 4.41e-33 124
MsG0480021129.01.T01 MTR_7g080780 37.864 206 124 3 112 316 127 329 5.30e-33 124
MsG0480021129.01.T01 MTR_8g069740 42.690 171 82 5 139 294 96 265 2.65e-32 121
MsG0480021129.01.T01 MTR_8g009010 36.574 216 103 4 104 311 78 267 5.44e-32 121
MsG0480021129.01.T01 MTR_2g104530 37.297 185 106 4 139 315 91 273 3.04e-30 116
MsG0480021129.01.T01 MTR_2g104490 35.043 234 131 6 71 295 66 287 6.74e-30 115
MsG0480021129.01.T01 MTR_2g104500 34.975 203 108 5 137 316 71 272 1.76e-27 108
MsG0480021129.01.T01 MTR_4g009510 38.037 163 94 5 155 314 45 203 1.48e-26 104
MsG0480021129.01.T01 MTR_2g104590 34.597 211 100 8 120 313 32 221 2.43e-26 104
MsG0480021129.01.T01 MTR_7g451650 37.931 145 78 2 176 314 57 195 7.94e-24 97.1
MsG0480021129.01.T01 MTR_4g009420 37.419 155 88 3 160 314 50 195 8.95e-23 94.0
MsG0480021129.01.T01 MTR_7g050350 36.691 139 76 2 182 314 1 133 6.24e-22 90.1
MsG0480021129.01.T01 MTR_7g451650 36.691 139 76 2 182 314 1 133 6.24e-22 90.1
MsG0480021129.01.T01 MTR_5g014550 44.444 126 52 3 183 294 54 175 5.41e-20 86.7
MsG0480021129.01.T01 MTR_8g067280 30.120 166 85 2 145 279 444 609 1.58e-15 77.8
MsG0480021129.01.T01 MTR_7g451650 35.385 130 72 2 176 299 57 180 1.84e-15 73.9
MsG0480021129.01.T01 MTR_8g024790 26.050 238 142 8 68 272 187 423 1.42e-14 74.3
MsG0480021129.01.T01 MTR_4g009420 37.097 124 70 2 176 299 65 180 2.65e-14 70.9
MsG0480021129.01.T01 MTR_1g072320 31.944 144 76 3 153 276 470 611 2.97e-14 73.9
MsG0480021129.01.T01 MTR_8g024770 29.333 150 77 4 127 252 248 392 4.39e-14 72.8
MsG0480021129.01.T01 MTR_5g030430 30.539 167 91 4 138 279 474 640 2.36e-13 71.2
MsG0480021129.01.T01 MTR_3g498695 28.324 173 104 2 154 306 299 471 4.22e-13 70.1
MsG0480021129.01.T01 MTR_7g117670 30.519 154 101 2 149 296 394 547 5.56e-13 69.7
MsG0480021129.01.T01 MTR_3g498695 28.324 173 103 3 154 306 299 470 2.95e-12 67.4
MsG0480021129.01.T01 MTR_7g096350 36.082 97 52 1 120 206 312 408 4.13e-12 67.0
MsG0480021129.01.T01 MTR_3g030700 30.968 155 92 3 155 294 198 352 4.27e-12 66.6
MsG0480021129.01.T01 MTR_8g027495 55.556 54 24 0 153 206 458 511 5.87e-12 66.6
MsG0480021129.01.T01 MTR_8g064700 26.036 169 102 4 143 292 234 398 1.14e-11 65.5
MsG0480021129.01.T01 MTR_3g104100 27.742 155 92 3 155 289 197 351 7.31e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021129.01.T01 AT4G37850 42.079 202 96 7 134 317 129 327 3.65e-37 135
MsG0480021129.01.T01 AT4G37850 42.079 202 96 7 134 317 129 327 3.65e-37 135
MsG0480021129.01.T01 AT2G22760 38.298 188 102 4 142 315 108 295 1.38e-35 130
MsG0480021129.01.T01 AT2G22750 40.625 192 90 4 146 318 119 305 5.42e-34 127
MsG0480021129.01.T01 AT2G22750 40.625 192 90 4 146 318 143 329 6.87e-34 127
MsG0480021129.01.T01 AT2G22750 40.625 192 90 4 146 318 147 333 7.52e-34 127
MsG0480021129.01.T01 AT2G22750 40.625 192 89 5 146 318 119 304 1.20e-32 123
MsG0480021129.01.T01 AT2G22750 40.625 192 89 5 146 318 147 332 1.26e-32 124
MsG0480021129.01.T01 AT2G22770 37.766 188 92 2 152 314 131 318 1.45e-30 118
MsG0480021129.01.T01 AT2G22760 38.323 167 90 3 142 295 108 274 1.45e-29 114
MsG0480021129.01.T01 AT5G46760 32.161 199 96 8 138 299 396 592 2.02e-18 86.3
MsG0480021129.01.T01 AT4G17880 31.754 211 117 6 94 277 347 557 7.46e-17 81.6
MsG0480021129.01.T01 AT1G32640 32.468 154 77 3 145 274 434 584 2.02e-15 77.4
MsG0480021129.01.T01 AT2G46510 37.931 116 54 3 145 250 377 484 1.34e-14 74.7
MsG0480021129.01.T01 AT1G01260 29.114 158 87 3 143 292 420 560 2.44e-13 70.9
MsG0480021129.01.T01 AT1G01260 29.114 158 87 3 143 292 420 560 2.44e-13 70.9
MsG0480021129.01.T01 AT1G01260 29.114 158 87 3 143 292 420 560 2.44e-13 70.9
MsG0480021129.01.T01 AT4G09820 24.906 265 171 8 61 318 273 516 1.28e-12 68.6
MsG0480021129.01.T01 AT4G16430 46.575 73 35 1 138 206 301 373 1.54e-12 68.6
MsG0480021129.01.T01 AT5G46830 54.839 62 24 1 149 206 335 396 5.11e-12 67.0
MsG0480021129.01.T01 AT5G41315 29.348 184 90 7 144 291 432 611 8.69e-12 66.2
MsG0480021129.01.T01 AT5G41315 29.348 184 90 7 144 291 437 616 9.21e-12 66.2
MsG0480021129.01.T01 AT5G41315 29.348 184 90 7 144 291 440 619 9.49e-12 66.2
MsG0480021129.01.T01 AT3G26744 29.697 165 96 2 154 298 308 472 4.27e-11 63.9
MsG0480021129.01.T01 AT3G26744 29.697 165 96 2 154 298 308 472 4.27e-11 63.9
MsG0480021129.01.T01 AT3G26744 29.697 165 96 2 154 298 308 472 4.27e-11 63.9

Find 50 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCCTAACCTTAAAA+AGG 0.267726 4:-54013311 MsG0480021129.01.T01:intron
TCAAGAACAAAACAAACAAT+TGG 0.334442 4:-54013635 MsG0480021129.01.T01:CDS
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4:-54012466 MsG0480021129.01.T01:CDS
GGGGCTTCTAGTTAAAATTA+TGG 0.343764 4:-54012404 MsG0480021129.01.T01:CDS
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 4:+54013335 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4:-54013500 MsG0480021129.01.T01:CDS
CAAGAACAAAACAAACAATT+GGG 0.390107 4:-54013634 MsG0480021129.01.T01:CDS
CATCTGCATCAAGAAAATTA+AGG 0.394973 4:+54013695 None:intergenic
ATCGCTGCATATGCATGGTT+TGG 0.407010 4:+54012543 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4:+54012472 None:intergenic
AGAAACCTCAAAAGGGTCAT+TGG 0.411401 4:-54013458 MsG0480021129.01.T01:CDS
AATAACAGTGTCTTACCCTT+TGG 0.416567 4:-54012349 MsG0480021129.01.T01:CDS
GCCCCTTGTGCTCCTTGCAT+TGG 0.417499 4:+54012422 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4:-54013466 MsG0480021129.01.T01:CDS
CCGTATTAAATCGGATGATT+CGG 0.446436 4:+54015602 None:intergenic
TAGGAAAACAAGTGTTGATT+CGG 0.449123 4:-54012447 MsG0480021129.01.T01:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 4:+54013336 None:intergenic
GATAACATTGAATGTGTTGT+TGG 0.466089 4:-54012499 MsG0480021129.01.T01:CDS
CCGAATCATCCGATTTAATA+CGG 0.470031 4:-54015602 MsG0480021129.01.T01:CDS
TGACTTGCTGAGATCATTTG+TGG 0.473303 4:+54013603 None:intergenic
ATGACTGAACCGTATTAAAT+CGG 0.483216 4:+54015593 None:intergenic
TGCATTATATATGCAAGGTT+CGG 0.489550 4:-54015676 None:intergenic
GCTGAGATCATTTGTGGAAG+TGG 0.497595 4:+54013609 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.502148 4:-54013403 MsG0480021129.01.T01:CDS
GGTAGCTACCTGAGCAATGA+TGG 0.511294 4:+54012306 None:intergenic
AAGGCCTCGTGCTCATGGTA+AGG 0.535577 4:-54013398 MsG0480021129.01.T01:CDS
TTCTTGATGCAGATGTGGGA+GGG 0.544131 4:-54013687 MsG0480021129.01.T01:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4:-54012314 MsG0480021129.01.T01:intron
GTTGATTCGGTTCCAATGCA+AGG 0.545125 4:-54012434 MsG0480021129.01.T01:CDS
AAGGTTCGGTGTTCAAATCT+CGG 0.545554 4:-54015662 MsG0480021129.01.T01:CDS
AACAATGCATTATATATGCA+AGG 0.561901 4:-54015681 None:intergenic
GTTCCAATGCAAGGAGCACA+AGG 0.563766 4:-54012425 MsG0480021129.01.T01:CDS
TCTTCATCGCTGCATATGCA+TGG 0.570607 4:+54012538 None:intergenic
TTTCTTGATGCAGATGTGGG+AGG 0.583981 4:-54013688 MsG0480021129.01.T01:CDS
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4:-54013465 MsG0480021129.01.T01:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4:+54012333 None:intergenic
TCCAATGCAAGGAGCACAAG+GGG 0.595381 4:-54012423 MsG0480021129.01.T01:CDS
AGGGTACAACTTGAGCATAA+AGG 0.600355 4:-54012107 MsG0480021129.01.T01:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4:-54012482 MsG0480021129.01.T01:CDS
TCATGGTAAGGATCACATCA+TGG 0.611981 4:-54013386 MsG0480021129.01.T01:CDS
TTTAATACGGTTCAGTCATG+CGG 0.612443 4:-54015589 MsG0480021129.01.T01:intron
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4:+54012334 None:intergenic
CTGCATATGCATGGTTTGGT+CGG 0.617639 4:+54012547 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.624364 4:-54013725 MsG0480021129.01.T01:CDS
GATGATTCGGTAGTTTGACT+CGG 0.639003 4:+54015615 None:intergenic
TGAAGATTCGTCATCATGTG+AGG 0.642706 4:-54012521 MsG0480021129.01.T01:CDS
TTCCAATGCAAGGAGCACAA+GGG 0.644827 4:-54012424 MsG0480021129.01.T01:CDS
AAGAACAAAACAAACAATTG+GGG 0.650416 4:-54013633 MsG0480021129.01.T01:CDS
ACTTGTGAAGAACGTACGCA+TGG 0.661373 4:-54012083 MsG0480021129.01.T01:CDS
TGATCCTTACCATGAGCACG+AGG 0.705697 4:+54013394 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATATTATATTATTTAT+AGG + Chr4:54013061-54013080 None:intergenic 0.0%
!!! AATATAATATTTTATTTTAT+GGG - Chr4:54013067-54013086 MsG0480021129.01.T01:intron 0.0%
!!! TAATATAATATTTTATTTTA+TGG - Chr4:54013066-54013085 MsG0480021129.01.T01:intron 0.0%
!! TACTACTATATTATTAAAAA+AGG + Chr4:54013174-54013193 None:intergenic 10.0%
!!! AAATATTCTATTTTATTGTT+TGG + Chr4:54013387-54013406 None:intergenic 10.0%
!!! ATCATATATTATTTTATAGT+TGG - Chr4:54015589-54015608 MsG0480021129.01.T01:intron 10.0%
!!! GTTTATATTTTGAAATATTT+AGG - Chr4:54014599-54014618 MsG0480021129.01.T01:intron 10.0%
!!! TATTTGATTTATATTATAGA+TGG + Chr4:54013350-54013369 None:intergenic 10.0%
!!! TCATATATTATTTTATAGTT+GGG - Chr4:54015590-54015609 MsG0480021129.01.T01:CDS 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG - Chr4:54015073-54015092 MsG0480021129.01.T01:intron 10.0%
!! ATGATTAATATTAGATACAA+GGG + Chr4:54015574-54015593 None:intergenic 15.0%
!! CATTAAAAAAAAATTGTGAT+AGG + Chr4:54015441-54015460 None:intergenic 15.0%
!! TATGATTAATATTAGATACA+AGG + Chr4:54015575-54015594 None:intergenic 15.0%
!!! AGACAAATCAATTTTATTTA+AGG - Chr4:54015015-54015034 MsG0480021129.01.T01:intron 15.0%
!!! CTTACATTTAACTTAATTAA+TGG + Chr4:54013715-54013734 None:intergenic 15.0%
!!! TAATATTTTATTTTATGGGT+TGG - Chr4:54013071-54013090 MsG0480021129.01.T01:intron 15.0%
!!! TTTGATTTAATTACAAACTA+AGG - Chr4:54012946-54012965 MsG0480021129.01.T01:intron 15.0%
!!! TTTTTTATTGAAAGAATAGA+TGG + Chr4:54013313-54013332 None:intergenic 15.0%
!! AAAAAAATATCTTGAAGACT+TGG + Chr4:54013867-54013886 None:intergenic 20.0%
!! ATACATGACATATATGAAAT+TGG + Chr4:54014527-54014546 None:intergenic 20.0%
!! ATACTTTGATCATATGTAAA+GGG + Chr4:54014658-54014677 None:intergenic 20.0%
!! CATCTACAACATTATAAATT+CGG - Chr4:54012917-54012936 MsG0480021129.01.T01:intron 20.0%
!! CCTTAAATAAGAATAAACAT+AGG - Chr4:54013800-54013819 MsG0480021129.01.T01:intron 20.0%
!! TGTATATTGTTTGTGTATAT+AGG + Chr4:54014877-54014896 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG + Chr4:54013803-54013822 None:intergenic 20.0%
!!! GAACTTTTATTTTTTTTTGC+AGG - Chr4:54013968-54013987 MsG0480021129.01.T01:intron 20.0%
!!! GTTTATTCTTATTTAAGGTT+AGG + Chr4:54013798-54013817 None:intergenic 20.0%
!!! TAGATCATAGTTTTAAAAAC+CGG + Chr4:54012222-54012241 None:intergenic 20.0%
!!! TCATTCTCTTTTGAAATATT+TGG + Chr4:54014197-54014216 None:intergenic 20.0%
!!! TTACATAACATACCTTTTTA+AGG + Chr4:54014427-54014446 None:intergenic 20.0%
!!! TTATTTTTTTTTGCAGGAAA+TGG - Chr4:54013974-54013993 MsG0480021129.01.T01:intron 20.0%
! AAGAACAAAACAAACAATTG+GGG - Chr4:54014090-54014109 MsG0480021129.01.T01:intron 25.0%
! ATAATCATGTACCAATATGT+TGG + Chr4:54012254-54012273 None:intergenic 25.0%
! ATATACGTATTAGAGTGAAA+GGG - Chr4:54013407-54013426 MsG0480021129.01.T01:CDS 25.0%
! ATATTATTTGTCTCAACGTT+TGG - Chr4:54013915-54013934 MsG0480021129.01.T01:intron 25.0%
! CAAGAACAAAACAAACAATT+GGG - Chr4:54014089-54014108 MsG0480021129.01.T01:intron 25.0%
! CAATGTTAAATGGTCAATTA+TGG + Chr4:54012791-54012810 None:intergenic 25.0%
! CACAAAAGTTGTCAAAAAAA+TGG + Chr4:54014712-54014731 None:intergenic 25.0%
! CATACTTTGATCATATGTAA+AGG + Chr4:54014659-54014678 None:intergenic 25.0%
! CTTTGACATATAATTATGAG+CGG - Chr4:54014905-54014924 MsG0480021129.01.T01:intron 25.0%
! TAAAATTTGCACAAAAACCA+AGG + Chr4:54014785-54014804 None:intergenic 25.0%
! TAAACAATACTCCAACATAT+TGG - Chr4:54012240-54012259 MsG0480021129.01.T01:intron 25.0%
! TAATCAACCATCTTTGAATT+TGG + Chr4:54013676-54013695 None:intergenic 25.0%
! TATAGGTCAAATATCTTTGA+TGG + Chr4:54013044-54013063 None:intergenic 25.0%
! TATATACGTATTAGAGTGAA+AGG - Chr4:54013406-54013425 MsG0480021129.01.T01:CDS 25.0%
! TCAAGAACAAAACAAACAAT+TGG - Chr4:54014088-54014107 MsG0480021129.01.T01:intron 25.0%
!! ATATACACTCATGTTTTCTA+AGG - Chr4:54012437-54012456 MsG0480021129.01.T01:CDS 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG + Chr4:54014460-54014479 None:intergenic 25.0%
!! GATTTGGTAAGAAAATCAAA+AGG - Chr4:54013627-54013646 MsG0480021129.01.T01:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG + Chr4:54014240-54014259 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG - Chr4:54013756-54013775 MsG0480021129.01.T01:intron 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG - Chr4:54015596-54015615 MsG0480021129.01.T01:CDS 25.0%
!!! CTATAACTTTTTTTTTGTGG+TGG + Chr4:54012087-54012106 None:intergenic 25.0%
!!! GGTCTATAACTTTTTTTTTG+TGG + Chr4:54012090-54012109 None:intergenic 25.0%
!!! GTGTTATTTGAACAACTATT+TGG + Chr4:54014853-54014872 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG + Chr4:54014422-54014441 None:intergenic 25.0%
!!! TTATTTTATAGTTGGGTGAA+GGG - Chr4:54015597-54015616 MsG0480021129.01.T01:CDS 25.0%
AAAAAAAAGCCAAAGCATAC+TGG - Chr4:54012339-54012358 MsG0480021129.01.T01:CDS 30.0%
AAATAATGTAACCCTGAATG+TGG + Chr4:54012546-54012565 None:intergenic 30.0%
ACACGACTATATCATTTGTT+TGG + Chr4:54013230-54013249 None:intergenic 30.0%
ACCTTCTCAAATAGATTTGT+AGG - Chr4:54013841-54013860 MsG0480021129.01.T01:intron 30.0%
ACTTTATCTCTTTATTGCCT+TGG - Chr4:54014765-54014784 MsG0480021129.01.T01:intron 30.0%
AGATACAAGGGTAAATTTCA+TGG + Chr4:54015562-54015581 None:intergenic 30.0%
ATGACTGAACCGTATTAAAT+CGG + Chr4:54012133-54012152 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG - Chr4:54014306-54014325 MsG0480021129.01.T01:intron 30.0%
CATCTGCATCAAGAAAATTA+AGG + Chr4:54014031-54014050 None:intergenic 30.0%
GATAACATTGAATGTGTTGT+TGG - Chr4:54015224-54015243 MsG0480021129.01.T01:intron 30.0%
TCTACCACATCAATGTTAAA+TGG + Chr4:54012801-54012820 None:intergenic 30.0%
TCTTGTTCCTAACCTTAAAA+AGG - Chr4:54014412-54014431 MsG0480021129.01.T01:intron 30.0%
TTCCTTCAGACAATAATTGA+TGG - Chr4:54013887-54013906 MsG0480021129.01.T01:intron 30.0%
TTGACCATTTAACATTGATG+TGG - Chr4:54012794-54012813 MsG0480021129.01.T01:intron 30.0%
! AATTTTCTTGATGCAGATGT+GGG - Chr4:54014032-54014051 MsG0480021129.01.T01:intron 30.0%
! CGAATACAATATATTTGCTG+AGG - Chr4:54013998-54014017 MsG0480021129.01.T01:intron 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG + Chr4:54014461-54014480 None:intergenic 30.0%
! TAATTTTCTTGATGCAGATG+TGG - Chr4:54014031-54014050 MsG0480021129.01.T01:intron 30.0%
! TTCATATTTTCCAATTCGGT+TGG + Chr4:54014236-54014255 None:intergenic 30.0%
! TTGATGATACTTTCATTGCT+TGG + Chr4:54013590-54013609 None:intergenic 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG - Chr4:54015276-54015295 MsG0480021129.01.T01:intron 30.0%
!! TTTATGGGTTGGATATAAGA+GGG - Chr4:54013082-54013101 MsG0480021129.01.T01:intron 30.0%
!!! ATGCTTTGGCTTTTTTTTGA+AGG + Chr4:54012337-54012356 None:intergenic 30.0%
!!! TGCTTTGGCTTTTTTTTGAA+GGG + Chr4:54012336-54012355 None:intergenic 30.0%
!!! TTTTATGGGTTGGATATAAG+AGG - Chr4:54013081-54013100 MsG0480021129.01.T01:intron 30.0%
!!! TTTTTTCCACAACTTCCAAT+CGG + Chr4:54015151-54015170 None:intergenic 30.0%
AATAACAGTGTCTTACCCTT+TGG - Chr4:54015374-54015393 MsG0480021129.01.T01:intron 35.0%
ACTCAACAGAAACCTCAAAA+GGG - Chr4:54014258-54014277 MsG0480021129.01.T01:intron 35.0%
AGGTCAAATATCTTTGATGG+TGG + Chr4:54013041-54013060 None:intergenic 35.0%
CATCTTTGAATTTGGAAAGC+AGG + Chr4:54013668-54013687 None:intergenic 35.0%
CCGAATCATCCGATTTAATA+CGG - Chr4:54012121-54012140 MsG0480021129.01.T01:intron 35.0%
CCGTATTAAATCGGATGATT+CGG + Chr4:54012124-54012143 None:intergenic 35.0%
CCTATAAAAGATCCAACTGT+GGG - Chr4:54013467-54013486 MsG0480021129.01.T01:CDS 35.0%
CTGCTTTCCAAATTCAAAGA+TGG - Chr4:54013666-54013685 MsG0480021129.01.T01:CDS 35.0%
GAAAGAGCTTAAAAACCGAT+TGG - Chr4:54015133-54015152 MsG0480021129.01.T01:intron 35.0%
GCCTACAAATCTATTTGAGA+AGG + Chr4:54013845-54013864 None:intergenic 35.0%
GTCCATCAATTATTGTCTGA+AGG + Chr4:54013892-54013911 None:intergenic 35.0%
GTTAAATGGTCAATTATGGC+TGG + Chr4:54012787-54012806 None:intergenic 35.0%
TAAAAACCGATTGGAAGTTG+TGG - Chr4:54015142-54015161 MsG0480021129.01.T01:intron 35.0%
TACTCAATCATAGGTCTCAA+GGG - Chr4:54013765-54013784 MsG0480021129.01.T01:intron 35.0%
TACTGAACTTGAAACAGGAA+AGG + Chr4:54013528-54013547 None:intergenic 35.0%
TATTAAGTGCCAGTATGCTT+TGG + Chr4:54012351-54012370 None:intergenic 35.0%
TCCTATAAAAGATCCAACTG+TGG - Chr4:54013466-54013485 MsG0480021129.01.T01:CDS 35.0%
TGAACCAAATGAGCTTAACT+TGG + Chr4:54012695-54012714 None:intergenic 35.0%
TTACTCAATCATAGGTCTCA+AGG - Chr4:54013764-54013783 MsG0480021129.01.T01:intron 35.0%
TTGAATTTGGAAAGCAGGAA+AGG + Chr4:54013663-54013682 None:intergenic 35.0%
TTGTGTACTGAACTTGAAAC+AGG + Chr4:54013533-54013552 None:intergenic 35.0%
TTTAATACGGTTCAGTCATG+CGG - Chr4:54012134-54012153 MsG0480021129.01.T01:intron 35.0%
! ATCAATTTGGTCAAGGTACT+GGG + Chr4:54012192-54012211 None:intergenic 35.0%
! ATTTTCCAATGACCCTTTTG+AGG + Chr4:54014273-54014292 None:intergenic 35.0%
! GATAATTAACTCGTTGGTCT+TGG + Chr4:54012722-54012741 None:intergenic 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG - Chr4:54015319-54015338 MsG0480021129.01.T01:intron 35.0%
! TATGTATAGTTCGACTCGTT+TGG + Chr4:54012630-54012649 None:intergenic 35.0%
!! ATATAAGAGGGTGTTTATGG+GGG - Chr4:54013094-54013113 MsG0480021129.01.T01:intron 35.0%
!! GATATAAGAGGGTGTTTATG+GGG - Chr4:54013093-54013112 MsG0480021129.01.T01:intron 35.0%
!! GGATATAAGAGGGTGTTTAT+GGG - Chr4:54013092-54013111 MsG0480021129.01.T01:intron 35.0%
!! TGGATATAAGAGGGTGTTTA+TGG - Chr4:54013091-54013110 MsG0480021129.01.T01:intron 35.0%
!!! GTGGGACTATTTTAATGCAT+AGG - Chr4:54012477-54012496 MsG0480021129.01.T01:CDS 35.0%
AAGTATCATCAATCAGCAGC+TGG - Chr4:54013598-54013617 MsG0480021129.01.T01:CDS 40.0%
AAGTGTTACCCTTGAGACAA+TGG - Chr4:54013551-54013570 MsG0480021129.01.T01:CDS 40.0%
ACCAGACATCAATTTGGTCA+AGG + Chr4:54012199-54012218 None:intergenic 40.0%
ACCTTGACCAAATTGATGTC+TGG - Chr4:54012195-54012214 MsG0480021129.01.T01:intron 40.0%
ACTCTTGCTTCCACTTGAAA+TGG + Chr4:54015254-54015273 None:intergenic 40.0%
AGAAACCTCAAAAGGGTCAT+TGG - Chr4:54014265-54014284 MsG0480021129.01.T01:intron 40.0%
AGGGTACAACTTGAGCATAA+AGG - Chr4:54015616-54015635 MsG0480021129.01.T01:CDS 40.0%
ATGATACATCGTCCACATTC+AGG - Chr4:54012531-54012550 MsG0480021129.01.T01:CDS 40.0%
ATTAAAATAGTCCCACGTCG+GGG + Chr4:54012473-54012492 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG - Chr4:54014257-54014276 MsG0480021129.01.T01:intron 40.0%
CAGTCCAAGTTAAGCTCATT+TGG - Chr4:54012688-54012707 MsG0480021129.01.T01:intron 40.0%
CATCAATTTGGTCAAGGTAC+TGG + Chr4:54012193-54012212 None:intergenic 40.0%
CATTAAAATAGTCCCACGTC+GGG + Chr4:54012474-54012493 None:intergenic 40.0%
CGACTCGATAATTAACTCGT+TGG + Chr4:54012728-54012747 None:intergenic 40.0%
GAGCTAACTCGAACATAGTT+CGG + Chr4:54012755-54012774 None:intergenic 40.0%
GATTTCCTCCATTGTCTCAA+GGG + Chr4:54013562-54013581 None:intergenic 40.0%
GCATTAAAATAGTCCCACGT+CGG + Chr4:54012475-54012494 None:intergenic 40.0%
TCATGGTAAGGATCACATCA+TGG - Chr4:54014337-54014356 MsG0480021129.01.T01:intron 40.0%
TCGAGTGTAGAATCTCCAAA+GGG + Chr4:54015392-54015411 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG - Chr4:54015202-54015221 MsG0480021129.01.T01:intron 40.0%
TGATACATCGTCCACATTCA+GGG - Chr4:54012532-54012551 MsG0480021129.01.T01:CDS 40.0%
TGATTTCCTCCATTGTCTCA+AGG + Chr4:54013563-54013582 None:intergenic 40.0%
TGCAAGAGCAATGAAGCTTT+GGG + Chr4:54014390-54014409 None:intergenic 40.0%
! CCCACAGTTGGATCTTTTAT+AGG + Chr4:54013470-54013489 None:intergenic 40.0%
! GAACTATGTTCGAGTTAGCT+CGG - Chr4:54012754-54012773 MsG0480021129.01.T01:intron 40.0%
!! AAGGTTCGGTGTTCAAATCT+CGG - Chr4:54012061-54012080 MsG0480021129.01.T01:CDS 40.0%
!! GATGATTCGGTAGTTTGACT+CGG + Chr4:54012111-54012130 None:intergenic 40.0%
!! TGACTTGCTGAGATCATTTG+TGG + Chr4:54014123-54014142 None:intergenic 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG - Chr4:54015241-54015260 MsG0480021129.01.T01:intron 40.0%
AACCGGACCAGACATCAATT+TGG + Chr4:54012205-54012224 None:intergenic 45.0%
ACTTGTGAAGAACGTACGCA+TGG - Chr4:54015640-54015659 MsG0480021129.01.T01:CDS 45.0%
ATCAGTGTCTCCAACCGAAT+TGG - Chr4:54014223-54014242 MsG0480021129.01.T01:intron 45.0%
ATCGCTGCATATGCATGGTT+TGG + Chr4:54015183-54015202 None:intergenic 45.0%
CAGCAGCTGGTTATCTGATT+TGG - Chr4:54013611-54013630 MsG0480021129.01.T01:CDS 45.0%
CGACATTACCATCATTGCTC+AGG - Chr4:54015409-54015428 MsG0480021129.01.T01:intron 45.0%
CTGAAGCGCATCACTATGTA+CGG + Chr4:54012413-54012432 None:intergenic 45.0%
CTGAATTAGAGTCCCACAGT+TGG + Chr4:54013482-54013501 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG + Chr4:54014391-54014410 None:intergenic 45.0%
GACCAAATTGATGTCTGGTC+CGG - Chr4:54012200-54012219 MsG0480021129.01.T01:intron 45.0%
GCTGAGATCATTTGTGGAAG+TGG + Chr4:54014117-54014136 None:intergenic 45.0%
GGGGGTGGGTATATGTATAA+GGG - Chr4:54013112-54013131 MsG0480021129.01.T01:intron 45.0%
GGGGTGGGTATATGTATAAG+GGG - Chr4:54013113-54013132 MsG0480021129.01.T01:intron 45.0%
GTCGAGTGTAGAATCTCCAA+AGG + Chr4:54015393-54015412 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG + Chr4:54015188-54015207 None:intergenic 45.0%
TGGGGGTGGGTATATGTATA+AGG - Chr4:54013111-54013130 MsG0480021129.01.T01:intron 45.0%
TGTACGGCAGACAATAGTAG+TGG + Chr4:54012397-54012416 None:intergenic 45.0%
TGTTACCCTTGAGACAATGG+AGG - Chr4:54013554-54013573 MsG0480021129.01.T01:CDS 45.0%
TTCTTGATGCAGATGTGGGA+GGG - Chr4:54014036-54014055 MsG0480021129.01.T01:intron 45.0%
TTTCTTGATGCAGATGTGGG+AGG - Chr4:54014035-54014054 MsG0480021129.01.T01:intron 45.0%
! GGGTCATTGGTTGAACCATT+GGG + Chr4:54012172-54012191 None:intergenic 45.0%
! TGGGTCATTGGTTGAACCAT+TGG + Chr4:54012173-54012192 None:intergenic 45.0%
! TTCCAATGCAAGGAGCACAA+GGG - Chr4:54015299-54015318 MsG0480021129.01.T01:intron 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG - Chr4:54015257-54015276 MsG0480021129.01.T01:intron 45.0%
!! CTGCATATGCATGGTTTGGT+CGG + Chr4:54015179-54015198 None:intergenic 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG - Chr4:54015289-54015308 MsG0480021129.01.T01:intron 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG + Chr4:54014315-54014334 None:intergenic 45.0%
!! AATTAAAAAATAATAATACT+AGG - Chr4:54012310-54012329 MsG0480021129.01.T01:intron 5.0%
!!! AAATTAGTTTTTTTTTTTAA+AGG + Chr4:54012994-54013013 None:intergenic 5.0%
!!! AGTATTATTATTTTTTAATT+TGG + Chr4:54012310-54012329 None:intergenic 5.0%
!!! TATTTTTTTTTTGTAAATTT+TGG - Chr4:54014808-54014827 MsG0480021129.01.T01:intron 5.0%
!!! TTAATATCATAAATAATTTT+TGG + Chr4:54012825-54012844 None:intergenic 5.0%
!!! TTTATATTTTGAAATATTTA+GGG - Chr4:54014600-54014619 MsG0480021129.01.T01:intron 5.0%
!!! TTTGTTTTTTTTATTTATTT+TGG - Chr4:54015526-54015545 MsG0480021129.01.T01:intron 5.0%
CGGTTTGACTAGTGACCCAA+TGG - Chr4:54012154-54012173 MsG0480021129.01.T01:intron 50.0%
GGTAGCTACCTGAGCAATGA+TGG + Chr4:54015420-54015439 None:intergenic 50.0%
GTTTCTAAACTCCCCGACGT+GGG - Chr4:54012459-54012478 MsG0480021129.01.T01:CDS 50.0%
TGATCCTTACCATGAGCACG+AGG + Chr4:54014332-54014351 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG - Chr4:54015298-54015317 MsG0480021129.01.T01:intron 50.0%
! TCCAATGCAAGGAGCACAAG+GGG - Chr4:54015300-54015319 MsG0480021129.01.T01:intron 50.0%
!! AAGAGGGTGTTTATGGGGGT+GGG - Chr4:54013098-54013117 MsG0480021129.01.T01:intron 50.0%
!! TAAGAGGGTGTTTATGGGGG+TGG - Chr4:54013097-54013116 MsG0480021129.01.T01:intron 50.0%
!! TGGTCAAGGTACTGGGTCAT+TGG + Chr4:54012185-54012204 None:intergenic 50.0%
AAGGCCTCGTGCTCATGGTA+AGG - Chr4:54014325-54014344 MsG0480021129.01.T01:intron 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG - Chr4:54014320-54014339 MsG0480021129.01.T01:intron 55.0%
GGTTTCTAAACTCCCCGACG+TGG - Chr4:54012458-54012477 MsG0480021129.01.T01:CDS 55.0%
GCCCCTTGTGCTCCTTGCAT+TGG + Chr4:54015304-54015323 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54012057 54015688 54012057 ID=MsG0480021129.01;Name=MsG0480021129.01
Chr4 mRNA 54012057 54015688 54012057 ID=MsG0480021129.01.T01;Parent=MsG0480021129.01;Name=MsG0480021129.01.T01;_AED=0.37;_eAED=0.38;_QI=0|0|0|0.75|1|1|4|0|320
Chr4 exon 54015590 54015688 54015590 ID=MsG0480021129.01.T01:exon:1008;Parent=MsG0480021129.01.T01
Chr4 exon 54013312 54013755 54013312 ID=MsG0480021129.01.T01:exon:1007;Parent=MsG0480021129.01.T01
Chr4 exon 54012315 54012653 54012315 ID=MsG0480021129.01.T01:exon:1006;Parent=MsG0480021129.01.T01
Chr4 exon 54012057 54012137 54012057 ID=MsG0480021129.01.T01:exon:1005;Parent=MsG0480021129.01.T01
Chr4 CDS 54015590 54015688 54015590 ID=MsG0480021129.01.T01:cds;Parent=MsG0480021129.01.T01
Chr4 CDS 54013312 54013755 54013312 ID=MsG0480021129.01.T01:cds;Parent=MsG0480021129.01.T01
Chr4 CDS 54012315 54012653 54012315 ID=MsG0480021129.01.T01:cds;Parent=MsG0480021129.01.T01
Chr4 CDS 54012057 54012137 54012057 ID=MsG0480021129.01.T01:cds;Parent=MsG0480021129.01.T01
Gene Sequence

>MsG0480021129.01.T01

ATGCAAGGTTCGGTGTTCAAATCTCGGCCACCACAAAAAAAAAGTTATAGACCGAGTCAAACTACCGAATCATCCGATTTAATACGGTTCAGTCATGCGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTTAATTTTCTTGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATAGCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCACTTCCACAAATGATCTCAGCAAGTCATTCATTCATGAAACAATTGATAATAGTGACAAAATCAATGAATCTCTTTCACCAAATATTTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAGCAAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAAGGATCACATCATGGCTGAGAGAAATCGAAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGATTGGAAGTTGTGGAAAAAAAGTCACCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAGTTGGGTGAAGGGTACAACTTGAGCATAAAGGAACTTGTGAAGAACGTACGCATGGCATTATTGAAGTTTACGTCATCATAA

Protein sequence

>MsG0480021129.01.T01

MQGSVFKSRPPQKKSYRPSQTTESSDLIRFSHAEMDEYNIFAEECNLNFLDADVGGFLSDDIANVFQEQNKQLGSTSTNDLSKSFIHETIDNSDKINESLSPNISKENETISVSPTELENMNHSTETSKGSLENEKFEAKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVVEKKSPTKPCICSDEDSSSCEDNIECVVGSPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQLGEGYNLSIKELVKNVRMALLKFTSS*