Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031474.01.T01 | XP_013451409.1 | 92.434 | 304 | 23 | 0 | 1 | 304 | 102 | 405 | 0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031474.01.T01 | Q9LI89 | 50.804 | 311 | 138 | 5 | 3 | 304 | 118 | 422 | 2.11E-100 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0680031474.01 | 0.825037 | 5.832533e-54 | 5.256196e-51 |
| MsG0080048509.01 | MsG0680031474.01 | 0.805706 | 1.172598e-49 | 6.247080e-47 |
| MsG0180000551.01 | MsG0680031474.01 | 0.809584 | 1.760696e-50 | 1.037825e-47 |
| MsG0180001008.01 | MsG0680031474.01 | 0.809859 | 1.536666e-50 | 9.123315e-48 |
| MsG0180001027.01 | MsG0680031474.01 | 0.812170 | 4.851384e-51 | 3.062418e-48 |
| MsG0180003320.01 | MsG0680031474.01 | 0.801613 | 8.290599e-49 | 3.976686e-46 |
| MsG0180003375.01 | MsG0680031474.01 | 0.802503 | 5.438749e-49 | 2.668590e-46 |
| MsG0180003484.01 | MsG0680031474.01 | 0.804693 | 1.911584e-49 | 9.921330e-47 |
| MsG0180003849.01 | MsG0680031474.01 | 0.808406 | 3.146390e-50 | 1.797576e-47 |
| MsG0180004549.01 | MsG0680031474.01 | 0.808966 | 2.388866e-50 | 1.384954e-47 |
| MsG0180005572.01 | MsG0680031474.01 | 0.816378 | 5.704455e-52 | 4.035461e-49 |
| MsG0180005757.01 | MsG0680031474.01 | 0.803930 | 2.756132e-49 | 1.402739e-46 |
| MsG0180006191.01 | MsG0680031474.01 | 0.814953 | 1.184889e-51 | 8.061435e-49 |
| MsG0280011267.01 | MsG0680031474.01 | 0.811466 | 6.903257e-51 | 4.276388e-48 |
| MsG0380011974.01 | MsG0680031474.01 | 0.804249 | 2.365480e-49 | 1.213664e-46 |
| MsG0380013843.01 | MsG0680031474.01 | 0.803522 | 3.349122e-49 | 1.686730e-46 |
| MsG0380014639.01 | MsG0680031474.01 | -0.802008 | 6.877895e-49 | 3.332361e-46 |
| MsG0680031474.01 | MsG0680034354.01 | 0.804372 | 2.229827e-49 | 1.147758e-46 |
| MsG0680031474.01 | MsG0680034418.01 | 0.852217 | 5.335676e-61 | 1.107135e-57 |
| MsG0680031474.01 | MsG0680034728.01 | 0.843228 | 1.594016e-58 | 2.477375e-55 |
| MsG0680031474.01 | MsG0780036199.01 | 0.832822 | 7.592941e-56 | 8.584051e-53 |
| MsG0680031474.01 | MsG0780036649.01 | 0.810912 | 9.101702e-51 | 5.556632e-48 |
| MsG0680031474.01 | MsG0780036839.01 | 0.827023 | 1.966811e-54 | 1.875844e-51 |
| MsG0680031474.01 | MsG0780038307.01 | 0.803527 | 3.341421e-49 | 1.683066e-46 |
| MsG0680031474.01 | MsG0780038519.01 | 0.829849 | 4.088768e-55 | 4.236004e-52 |
| MsG0680031474.01 | MsG0780038657.01 | 0.802064 | 6.698284e-49 | 3.250013e-46 |
| MsG0680031474.01 | MsG0780038818.01 | 0.802323 | 5.923521e-49 | 2.893351e-46 |
| MsG0680031474.01 | MsG0780039237.01 | 0.805640 | 1.210506e-49 | 6.437679e-47 |
| MsG0680031474.01 | MsG0780039619.01 | 0.807563 | 4.755965e-50 | 2.657495e-47 |
| MsG0680031474.01 | MsG0780039883.01 | 0.802381 | 5.764078e-49 | 2.819588e-46 |
| MsG0680031474.01 | MsG0780039916.01 | 0.823274 | 1.513181e-53 | 1.296859e-50 |
| MsG0680031474.01 | MsG0780039923.01 | 0.807745 | 4.349472e-50 | 2.442103e-47 |
| MsG0680031474.01 | MsG0780039925.01 | 0.821591 | 3.721185e-53 | 3.040282e-50 |
| MsG0680031474.01 | MsG0780039979.01 | 0.872843 | 2.328385e-67 | 9.887995e-64 |
| MsG0680031474.01 | MsG0780040497.01 | 0.825085 | 5.680241e-54 | 5.126020e-51 |
| MsG0680031474.01 | MsG0780040498.01 | 0.821233 | 4.501940e-53 | 3.641817e-50 |
| MsG0680031474.01 | MsG0780040831.01 | 0.804080 | 2.564461e-49 | 1.310177e-46 |
| MsG0680031474.01 | MsG0780041036.01 | 0.810889 | 9.207497e-51 | 5.617744e-48 |
| MsG0680031474.01 | MsG0780041180.01 | 0.839018 | 2.036082e-57 | 2.775691e-54 |
| MsG0680031474.01 | MsG0880042122.01 | 0.811590 | 6.488444e-51 | 4.032356e-48 |
| MsG0680031474.01 | MsG0880042369.01 | 0.808062 | 3.723966e-50 | 2.108287e-47 |
| MsG0680031474.01 | MsG0880042635.01 | 0.801254 | 9.819606e-49 | 4.667838e-46 |
| MsG0680031474.01 | MsG0880043212.01 | 0.821387 | 4.147689e-53 | 3.369622e-50 |
| MsG0680031474.01 | MsG0880043953.01 | 0.815978 | 7.008790e-52 | 4.904144e-49 |
| MsG0680031474.01 | MsG0880045854.01 | 0.834516 | 2.864630e-56 | 3.407756e-53 |
| MsG0680031474.01 | MsG0880046019.01 | 0.804571 | 2.026980e-49 | 1.048687e-46 |
| MsG0680031474.01 | MsG0880046095.01 | 0.822027 | 2.950731e-53 | 2.440829e-50 |
| MsG0680031474.01 | MsG0880046273.01 | 0.805639 | 1.211308e-49 | 6.441743e-47 |
| MsG0680031474.01 | MsG0880047383.01 | 0.834818 | 2.405637e-56 | 2.887355e-53 |
| MsG0680031474.01 | MsG0880047714.01 | 0.809657 | 1.698258e-50 | 1.002954e-47 |
| MsG0480018622.01 | MsG0680031474.01 | 0.808802 | 2.589736e-50 | 1.494833e-47 |
| MsG0480019024.01 | MsG0680031474.01 | 0.813831 | 2.096953e-51 | 1.384057e-48 |
| MsG0480019146.01 | MsG0680031474.01 | 0.837559 | 4.838322e-57 | 6.308411e-54 |
| MsG0480019842.01 | MsG0680031474.01 | 0.824700 | 7.002965e-54 | 6.250643e-51 |
| MsG0480020722.01 | MsG0680031474.01 | 0.818177 | 2.245750e-52 | 1.668972e-49 |
| MsG0480020904.01 | MsG0680031474.01 | 0.821637 | 3.632932e-53 | 2.972035e-50 |
| MsG0480021129.01 | MsG0680031474.01 | 0.831021 | 2.113392e-55 | 2.265189e-52 |
| MsG0480021133.01 | MsG0680031474.01 | 0.805417 | 1.348503e-49 | 7.130428e-47 |
| MsG0480021361.01 | MsG0680031474.01 | 0.804050 | 2.601980e-49 | 1.328303e-46 |
| MsG0480021396.01 | MsG0680031474.01 | 0.825761 | 3.929621e-54 | 3.614952e-51 |
| MsG0480021573.01 | MsG0680031474.01 | 0.813258 | 2.803299e-51 | 1.821642e-48 |
| MsG0480022055.01 | MsG0680031474.01 | 0.826274 | 2.967854e-54 | 2.770414e-51 |
| MsG0480022078.01 | MsG0680031474.01 | 0.801358 | 9.348552e-49 | 4.455620e-46 |
| MsG0480022428.01 | MsG0680031474.01 | 0.833064 | 6.607743e-56 | 7.525746e-53 |
| MsG0480022833.01 | MsG0680031474.01 | 0.806443 | 8.207872e-50 | 4.455527e-47 |
| MsG0480023322.01 | MsG0680031474.01 | 0.821196 | 4.592380e-53 | 3.711321e-50 |
| MsG0480023987.01 | MsG0680031474.01 | 0.800483 | 1.411114e-48 | 6.577909e-46 |
| MsG0580024087.01 | MsG0680031474.01 | 0.837607 | 4.703602e-57 | 6.142158e-54 |
| MsG0580024839.01 | MsG0680031474.01 | 0.817688 | 2.896083e-52 | 2.123587e-49 |
| MsG0580025023.01 | MsG0680031474.01 | 0.814130 | 1.801581e-51 | 1.198790e-48 |
| MsG0580025431.01 | MsG0680031474.01 | 0.833778 | 4.385457e-56 | 5.102315e-53 |
| MsG0580025507.01 | MsG0680031474.01 | 0.829441 | 5.138180e-55 | 5.259152e-52 |
| MsG0580025590.01 | MsG0680031474.01 | 0.804356 | 2.246720e-49 | 1.155994e-46 |
| MsG0380015660.01 | MsG0680031474.01 | 0.810043 | 1.402189e-50 | 8.365583e-48 |
| MsG0380015711.01 | MsG0680031474.01 | 0.815498 | 8.965061e-52 | 6.191499e-49 |
| MsG0380016299.01 | MsG0680031474.01 | 0.846215 | 2.497463e-59 | 4.267333e-56 |
| MsG0380016300.01 | MsG0680031474.01 | 0.813954 | 1.970593e-51 | 1.304978e-48 |
| MsG0380016301.01 | MsG0680031474.01 | 0.802523 | 5.388841e-49 | 2.645307e-46 |
| MsG0380016372.01 | MsG0680031474.01 | 0.818696 | 1.713114e-52 | 1.291439e-49 |
| MsG0380016485.01 | MsG0680031474.01 | 0.810139 | 1.337442e-50 | 7.998717e-48 |
| MsG0380017102.01 | MsG0680031474.01 | 0.800850 | 1.187538e-48 | 5.587811e-46 |
| MsG0380017901.01 | MsG0680031474.01 | 0.808254 | 3.389955e-50 | 1.929023e-47 |
| MsG0380018004.01 | MsG0680031474.01 | 0.802453 | 5.571013e-49 | 2.730007e-46 |
| MsG0580026162.01 | MsG0680031474.01 | 0.813712 | 2.227587e-51 | 1.465634e-48 |
| MsG0580026311.01 | MsG0680031474.01 | 0.824012 | 1.016578e-53 | 8.895511e-51 |
| MsG0580026521.01 | MsG0680031474.01 | 0.814215 | 1.725635e-51 | 1.150873e-48 |
| MsG0580028302.01 | MsG0680031474.01 | 0.800464 | 1.424047e-48 | 6.634838e-46 |
| MsG0580029359.01 | MsG0680031474.01 | 0.807025 | 6.182244e-50 | 3.406661e-47 |
| MsG0580029676.01 | MsG0680031474.01 | 0.826448 | 2.698464e-54 | 2.531399e-51 |
| MsG0580029938.01 | MsG0680031474.01 | 0.828354 | 9.421181e-55 | 9.341136e-52 |
| MsG0680030296.01 | MsG0680031474.01 | 0.810698 | 1.013032e-50 | 6.149105e-48 |
| MsG0280006546.01 | MsG0680031474.01 | 0.828643 | 8.022959e-55 | 8.022150e-52 |
| MsG0280006829.01 | MsG0680031474.01 | 0.815365 | 9.595889e-52 | 6.602701e-49 |
| MsG0280007937.01 | MsG0680031474.01 | 0.821289 | 4.369208e-53 | 3.539894e-50 |
| MsG0280009167.01 | MsG0680031474.01 | 0.812992 | 3.207160e-51 | 2.069186e-48 |
| MsG0280009232.01 | MsG0680031474.01 | 0.833528 | 5.064387e-56 | 5.848187e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031474.01.T01 | MTR_6g023805 | 92.434 | 304 | 23 | 0 | 1 | 304 | 102 | 405 | 0.0 | 591 |
| MsG0680031474.01.T01 | MTR_7g029290 | 63.107 | 309 | 99 | 3 | 2 | 303 | 102 | 402 | 1.39e-130 | 377 |
| MsG0680031474.01.T01 | MTR_2g094093 | 36.570 | 309 | 175 | 6 | 2 | 302 | 67 | 362 | 4.48e-59 | 193 |
| MsG0680031474.01.T01 | MTR_8g468030 | 40.134 | 299 | 147 | 7 | 20 | 302 | 213 | 495 | 1.12e-55 | 188 |
| MsG0680031474.01.T01 | MTR_4g022260 | 38.305 | 295 | 157 | 7 | 20 | 302 | 134 | 415 | 3.09e-55 | 185 |
| MsG0680031474.01.T01 | MTR_0496s0010 | 39.100 | 289 | 157 | 5 | 20 | 302 | 134 | 409 | 3.98e-55 | 184 |
| MsG0680031474.01.T01 | MTR_4g022400 | 38.983 | 295 | 155 | 7 | 20 | 302 | 131 | 412 | 4.00e-55 | 184 |
| MsG0680031474.01.T01 | MTR_4g108280 | 41.434 | 251 | 129 | 3 | 20 | 261 | 94 | 335 | 8.80e-55 | 182 |
| MsG0680031474.01.T01 | MTR_5g039390 | 38.514 | 296 | 156 | 6 | 20 | 302 | 192 | 474 | 2.59e-54 | 184 |
| MsG0680031474.01.T01 | MTR_0105s0170 | 39.661 | 295 | 153 | 7 | 20 | 302 | 165 | 446 | 1.54e-52 | 178 |
| MsG0680031474.01.T01 | MTR_0345s0010 | 39.456 | 294 | 155 | 7 | 20 | 302 | 152 | 433 | 2.45e-52 | 177 |
| MsG0680031474.01.T01 | MTR_0105s0020 | 38.983 | 295 | 155 | 7 | 20 | 302 | 152 | 433 | 3.89e-52 | 177 |
| MsG0680031474.01.T01 | MTR_0105s0130 | 39.322 | 295 | 154 | 7 | 20 | 302 | 152 | 433 | 1.07e-51 | 176 |
| MsG0680031474.01.T01 | MTR_0105s0040 | 39.456 | 294 | 155 | 7 | 20 | 302 | 250 | 531 | 1.81e-51 | 177 |
| MsG0680031474.01.T01 | MTR_1330s0010 | 41.502 | 253 | 133 | 4 | 20 | 266 | 165 | 408 | 1.46e-49 | 170 |
| MsG0680031474.01.T01 | MTR_2g012790 | 30.387 | 181 | 97 | 7 | 68 | 234 | 111 | 276 | 6.56e-15 | 74.7 |
| MsG0680031474.01.T01 | MTR_3g085570 | 24.286 | 280 | 163 | 13 | 1 | 261 | 81 | 330 | 1.83e-13 | 70.5 |
| MsG0680031474.01.T01 | MTR_2g019230 | 23.913 | 276 | 182 | 9 | 2 | 266 | 100 | 358 | 1.08e-11 | 65.5 |
| MsG0680031474.01.T01 | MTR_8g080370 | 23.469 | 294 | 183 | 13 | 1 | 278 | 97 | 364 | 3.46e-11 | 63.9 |
| MsG0680031474.01.T01 | MTR_8g085600 | 24.096 | 332 | 201 | 15 | 2 | 302 | 124 | 435 | 5.14e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031474.01.T01 | AT3G27150 | 50.804 | 311 | 138 | 5 | 3 | 304 | 118 | 422 | 2.15e-101 | 303 |
| MsG0680031474.01.T01 | AT3G27150 | 50.804 | 311 | 138 | 5 | 3 | 304 | 118 | 422 | 2.15e-101 | 303 |
| MsG0680031474.01.T01 | AT5G40680 | 46.602 | 309 | 152 | 3 | 3 | 304 | 113 | 415 | 2.56e-91 | 278 |
| MsG0680031474.01.T01 | AT1G14330 | 40.476 | 294 | 153 | 6 | 20 | 302 | 157 | 439 | 1.00e-58 | 194 |
| MsG0680031474.01.T01 | AT1G26930 | 37.793 | 299 | 157 | 6 | 20 | 302 | 134 | 419 | 5.06e-58 | 192 |
| MsG0680031474.01.T01 | AT5G60570 | 38.095 | 315 | 162 | 6 | 2 | 302 | 96 | 391 | 2.81e-56 | 187 |
| MsG0680031474.01.T01 | AT5G60570 | 38.095 | 315 | 162 | 6 | 2 | 302 | 96 | 391 | 2.81e-56 | 187 |
| MsG0680031474.01.T01 | AT5G60570 | 38.095 | 315 | 162 | 6 | 2 | 302 | 96 | 391 | 2.81e-56 | 187 |
| MsG0680031474.01.T01 | AT2G02870 | 38.411 | 302 | 151 | 7 | 20 | 302 | 180 | 465 | 6.70e-55 | 185 |
| MsG0680031474.01.T01 | AT2G02870 | 38.411 | 302 | 151 | 7 | 20 | 302 | 180 | 465 | 6.70e-55 | 185 |
| MsG0680031474.01.T01 | AT2G02870 | 38.411 | 302 | 151 | 7 | 20 | 302 | 180 | 465 | 6.70e-55 | 185 |
| MsG0680031474.01.T01 | AT1G74510 | 37.171 | 304 | 158 | 6 | 20 | 302 | 158 | 449 | 2.57e-53 | 181 |
| MsG0680031474.01.T01 | AT1G74510 | 37.171 | 304 | 158 | 6 | 20 | 302 | 158 | 449 | 2.57e-53 | 181 |
| MsG0680031474.01.T01 | AT1G74510 | 37.171 | 304 | 158 | 6 | 20 | 302 | 158 | 449 | 2.57e-53 | 181 |
| MsG0680031474.01.T01 | AT1G26930 | 34.274 | 248 | 130 | 7 | 71 | 302 | 137 | 367 | 5.13e-37 | 135 |
| MsG0680031474.01.T01 | AT1G16250 | 28.986 | 207 | 123 | 8 | 70 | 267 | 137 | 328 | 8.04e-12 | 65.9 |
| MsG0680031474.01.T01 | AT1G16250 | 28.986 | 207 | 123 | 8 | 70 | 267 | 137 | 328 | 8.04e-12 | 65.9 |
| MsG0680031474.01.T01 | AT1G55270 | 24.710 | 259 | 172 | 9 | 9 | 261 | 8 | 249 | 1.26e-11 | 64.7 |
| MsG0680031474.01.T01 | AT1G55270 | 24.164 | 269 | 179 | 10 | 1 | 261 | 124 | 375 | 1.77e-11 | 64.7 |
Find 102 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTAATTTGGAGGTTT+TGG | 0.159652 | 6:+20958603 | MsG0680031474.01.T01:CDS |
| ATACATTAACTACTTAATTA+TGG | 0.210430 | 6:+20955747 | MsG0680031474.01.T01:five_prime_UTR |
| TCTTCACTTCTTAGTAAATA+TGG | 0.215084 | 6:+20955878 | MsG0680031474.01.T01:five_prime_UTR |
| AACTTAATGTCTTAAGTAAA+TGG | 0.224419 | 6:+20955789 | MsG0680031474.01.T01:five_prime_UTR |
| GGCACACATTTACTTGTTTC+AGG | 0.232555 | 6:+20957175 | MsG0680031474.01.T01:CDS |
| TCTGATTACATATTTGAAAA+TGG | 0.250427 | 6:+20957130 | MsG0680031474.01.T01:CDS |
| AGCCATATGGTTTCATTTCA+TGG | 0.285129 | 6:+20959093 | MsG0680031474.01.T01:three_prime_UTR |
| CACTCCAAAACCTCCAAATT+AGG | 0.287246 | 6:-20958607 | None:intergenic |
| CTAGCTTTCTCTTAACCTTC+AGG | 0.288483 | 6:-20958873 | None:intergenic |
| ATGTAATCAGATGGAATAAT+AGG | 0.294095 | 6:-20957118 | None:intergenic |
| CACCTTGGTGTTATCATTGA+TGG | 0.312688 | 6:-20958028 | None:intergenic |
| AGTAACTTGTGGAAGAAGTT+AGG | 0.314626 | 6:+20958466 | MsG0680031474.01.T01:CDS |
| TTGGGAGTTCTTTCCATGTT+TGG | 0.318582 | 6:-20958180 | None:intergenic |
| CTTCAGGCTTTCTTTGACCT+TGG | 0.323212 | 6:-20958857 | None:intergenic |
| CCATGTTGAATCCATCTTGA+TGG | 0.331370 | 6:+20955655 | MsG0680031474.01.T01:five_prime_UTR |
| CAGCTGAATTTAAACATGTT+TGG | 0.335547 | 6:-20958138 | None:intergenic |
| GTTGCAGATACTTAGCAATA+AGG | 0.344290 | 6:+20956615 | MsG0680031474.01.T01:intron |
| TGGAACTACTTGATAATCAT+TGG | 0.354345 | 6:+20959113 | MsG0680031474.01.T01:three_prime_UTR |
| TGGTGTAGCACTCAAATCTT+TGG | 0.357858 | 6:+20958525 | MsG0680031474.01.T01:CDS |
| AGATTGATGGCGCAGTTATA+TGG | 0.361584 | 6:+20957969 | MsG0680031474.01.T01:CDS |
| GACCACCTTTCAACTTCATA+TGG | 0.375053 | 6:+20955719 | MsG0680031474.01.T01:five_prime_UTR |
| GGAGGCATACTCCATTTGTT+AGG | 0.381450 | 6:-20955634 | None:intergenic |
| CTATAGATAAGGAGAATGAT+AGG | 0.389735 | 6:+20957004 | MsG0680031474.01.T01:exon |
| AAAGTTTATAGTAAGCCATA+TGG | 0.406409 | 6:+20959080 | MsG0680031474.01.T01:three_prime_UTR |
| ATCTTGTTCAGGTTGTTACT+TGG | 0.410043 | 6:+20958222 | MsG0680031474.01.T01:CDS |
| ACAATATCCTTCAACATGTT+AGG | 0.416158 | 6:-20958343 | None:intergenic |
| TTACCTAAGTGGAGTTTCAT+TGG | 0.417301 | 6:+20956732 | MsG0680031474.01.T01:five_prime_UTR |
| GGTGGTCAAGATGAGGTGAT+AGG | 0.421233 | 6:-20955703 | None:intergenic |
| AGTGACAATGGTTCCTCCTC+AGG | 0.422624 | 6:+20956825 | MsG0680031474.01.T01:five_prime_UTR |
| ATTGGAGGACAAGATGAAAA+TGG | 0.423161 | 6:+20958262 | MsG0680031474.01.T01:CDS |
| TAGAAAGGATGAAAATGAAA+AGG | 0.423636 | 6:-20955849 | None:intergenic |
| ACTTGGTTATCAGCTCTAAC+AGG | 0.426921 | 6:-20958496 | None:intergenic |
| GTAACTTGTGGAAGAAGTTA+GGG | 0.433049 | 6:+20958467 | MsG0680031474.01.T01:CDS |
| GAGTGAGTTGGAACAAGAAA+AGG | 0.434201 | 6:-20955681 | None:intergenic |
| AAATTGATTCAATCGATAAG+AGG | 0.438329 | 6:-20958986 | None:intergenic |
| CGATGTGAGACCTCATTGAT+TGG | 0.443932 | 6:-20958920 | None:intergenic |
| TTTATGGATCAAGTAGTTGT+TGG | 0.447815 | 6:+20958718 | MsG0680031474.01.T01:three_prime_UTR |
| TAAATGTGTGCCTGCAGAAA+AGG | 0.449481 | 6:-20957164 | None:intergenic |
| ATGAAAATGAAAAGGGTGAA+TGG | 0.450083 | 6:-20955841 | None:intergenic |
| TTTGATTCCTAACATGTTGA+AGG | 0.452996 | 6:+20958336 | MsG0680031474.01.T01:CDS |
| TTCCATGAAATGAAACCATA+TGG | 0.454912 | 6:-20959095 | None:intergenic |
| AGGAATCAAATTCCACTTGT+TGG | 0.460052 | 6:-20958323 | None:intergenic |
| TGCTTCAACAAATGAGGTAA+AGG | 0.467388 | 6:+20958429 | MsG0680031474.01.T01:CDS |
| TGAACTAGAGACAATGATAT+TGG | 0.469340 | 6:+20956902 | MsG0680031474.01.T01:five_prime_UTR |
| AGGAATTGGTGTGTGTTTGA+TGG | 0.471263 | 6:+20957070 | MsG0680031474.01.T01:CDS |
| TGGATCAAGTAGTTGTTGGT+TGG | 0.472706 | 6:+20958722 | MsG0680031474.01.T01:three_prime_UTR |
| TTGTTAACAACAGCTATAAG+AGG | 0.476907 | 6:-20958388 | None:intergenic |
| AGTGGTGAAATCTATAGATA+AGG | 0.479311 | 6:+20956993 | MsG0680031474.01.T01:five_prime_UTR |
| GGTTTCCAATTTCAAAACAC+TGG | 0.484943 | 6:+20956928 | MsG0680031474.01.T01:five_prime_UTR |
| AACAACAAATGAATGGTTCA+AGG | 0.485311 | 6:+20958003 | MsG0680031474.01.T01:CDS |
| AGAAAGGATGAAAATGAAAA+GGG | 0.485678 | 6:-20955848 | None:intergenic |
| AAGCAAATTGTGTGTGGTAG+GGG | 0.489778 | 6:+20958631 | MsG0680031474.01.T01:CDS |
| GTGCTACACCATAGCCAACT+TGG | 0.490751 | 6:-20958513 | None:intergenic |
| GGAAGCAAATTGTGTGTGGT+AGG | 0.497586 | 6:+20958629 | MsG0680031474.01.T01:CDS |
| AAGTGGAGTTTCATTGGCAG+TGG | 0.505384 | 6:+20956738 | MsG0680031474.01.T01:five_prime_UTR |
| GTAAAAGATCATTACCTAAG+TGG | 0.506885 | 6:+20956721 | MsG0680031474.01.T01:five_prime_UTR |
| CAAGTGGTGGTGAAAGGAAT+TGG | 0.508700 | 6:+20957056 | MsG0680031474.01.T01:CDS |
| AGAACATAATCTGCATCCTT+CGG | 0.509496 | 6:-20956855 | None:intergenic |
| CTCAAATTTCACAATGACCT+GGG | 0.514691 | 6:-20958958 | None:intergenic |
| TGTTAACAAGTGGTGGTGAA+AGG | 0.515429 | 6:+20957050 | MsG0680031474.01.T01:CDS |
| AAGTGAAGAACAAAATAGAA+AGG | 0.515818 | 6:-20955864 | None:intergenic |
| ATGAACTAACAACAAATGAA+TGG | 0.521158 | 6:+20957996 | MsG0680031474.01.T01:CDS |
| CCATTTGTTAGGAAAATAAG+TGG | 0.522596 | 6:-20955623 | None:intergenic |
| TTAACAGGTATGGAGATTGA+TGG | 0.527218 | 6:+20957956 | MsG0680031474.01.T01:intron |
| ATGGTCAATTCAAGTCATGC+AGG | 0.532458 | 6:+20957089 | MsG0680031474.01.T01:CDS |
| GCTGATAACCAAGTTGGCTA+TGG | 0.537433 | 6:+20958505 | MsG0680031474.01.T01:CDS |
| GAAGCAAATTGTGTGTGGTA+GGG | 0.542922 | 6:+20958630 | MsG0680031474.01.T01:CDS |
| GCTCAAATTTCACAATGACC+TGG | 0.543359 | 6:-20958959 | None:intergenic |
| GTTAGAGCTGATAACCAAGT+TGG | 0.551286 | 6:+20958499 | MsG0680031474.01.T01:CDS |
| ATGAGGTGATAGGAGTGAGT+TGG | 0.555321 | 6:-20955693 | None:intergenic |
| AGAAAAGGAAGCCATCAAGA+TGG | 0.561105 | 6:-20955666 | None:intergenic |
| GAAAACCATATGAAGTTGAA+AGG | 0.561476 | 6:-20955724 | None:intergenic |
| TTTAGGCAAGTTTGATCTCG+AGG | 0.564407 | 6:+20958829 | MsG0680031474.01.T01:three_prime_UTR |
| CTTCGGTTCTTGACCTGAGG+AGG | 0.568044 | 6:-20956838 | None:intergenic |
| ATCCTTCGGTTCTTGACCTG+AGG | 0.570020 | 6:-20956841 | None:intergenic |
| AAAACCTCCAAATTAGGATG+AGG | 0.573429 | 6:-20958601 | None:intergenic |
| AGCAAATTGTGTGTGGTAGG+GGG | 0.574393 | 6:+20958632 | MsG0680031474.01.T01:CDS |
| ACTTGATGCTTCAACAAATG+AGG | 0.574620 | 6:+20958423 | MsG0680031474.01.T01:CDS |
| TATAGATAAGGAGAATGATA+GGG | 0.576196 | 6:+20957005 | MsG0680031474.01.T01:exon |
| TTGTCACTTTCTAGTGACAA+TGG | 0.583290 | 6:+20956813 | MsG0680031474.01.T01:five_prime_UTR |
| CTCCTCAGGTCAAGAACCGA+AGG | 0.589070 | 6:+20956839 | MsG0680031474.01.T01:five_prime_UTR |
| CTGCCAATGAAACTCCACTT+AGG | 0.603962 | 6:-20956735 | None:intergenic |
| CCATCAAGATGGATTCAACA+TGG | 0.604612 | 6:-20955655 | None:intergenic |
| ACAACAAATGAATGGTTCAA+GGG | 0.605845 | 6:+20958004 | MsG0680031474.01.T01:CDS |
| TCATCACTGAGACATGGTAA+TGG | 0.609444 | 6:-20956882 | None:intergenic |
| TTAGGCAAGTTTGATCTCGA+GGG | 0.613470 | 6:+20958830 | MsG0680031474.01.T01:three_prime_UTR |
| ACAATTCTGAAAACCAAACA+TGG | 0.618319 | 6:+20958167 | MsG0680031474.01.T01:CDS |
| TAGAGACAATGATATTGGCA+AGG | 0.621754 | 6:+20956907 | MsG0680031474.01.T01:five_prime_UTR |
| ATATGAAAGATAGTAACTTG+TGG | 0.628816 | 6:+20958455 | MsG0680031474.01.T01:CDS |
| TCGACGAAAAGACCAACAAG+TGG | 0.636359 | 6:+20958311 | MsG0680031474.01.T01:CDS |
| AACCATATGAAGTTGAAAGG+TGG | 0.648949 | 6:-20955721 | None:intergenic |
| GATGATATTACCAATCAATG+AGG | 0.661161 | 6:+20958910 | MsG0680031474.01.T01:three_prime_UTR |
| CGATAATAAGATACGAACCC+AGG | 0.662407 | 6:+20958941 | MsG0680031474.01.T01:three_prime_UTR |
| CAAGGTCAAAGAAAGCCTGA+AGG | 0.662528 | 6:+20958858 | MsG0680031474.01.T01:three_prime_UTR |
| TCTAGTTCATCACTGAGACA+TGG | 0.668170 | 6:-20956888 | None:intergenic |
| TTAACAACAGCTATAAGAGG+TGG | 0.679581 | 6:-20958385 | None:intergenic |
| GTTGAAAGGTGGTCAAGATG+AGG | 0.680742 | 6:-20955710 | None:intergenic |
| GAGTGGAAGCAAATTGTGTG+TGG | 0.695918 | 6:+20958625 | MsG0680031474.01.T01:CDS |
| GTCCATCAATGATAACACCA+AGG | 0.717741 | 6:+20958026 | MsG0680031474.01.T01:CDS |
| TTGATCTCGAGGGTTCACCA+AGG | 0.728733 | 6:+20958840 | MsG0680031474.01.T01:three_prime_UTR |
| TCAAGATGGATTCAACATGG+AGG | 0.746109 | 6:-20955652 | None:intergenic |
| AATGGTGACGATCTAACATG+TGG | 0.770718 | 6:+20958280 | MsG0680031474.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAACTTTTTTACAATAA+AGG | - | Chr6:20959070-20959089 | None:intergenic | 10.0% |
| !! | AAACAATTAAAATTAAGTGT+AGG | - | Chr6:20956265-20956284 | None:intergenic | 15.0% |
| !! | ATACATTAACTACTTAATTA+TGG | + | Chr6:20955747-20955766 | MsG0680031474.01.T01:five_prime_UTR | 15.0% |
| !! | TTTCTATAACAAAAATGAAA+CGG | - | Chr6:20956143-20956162 | None:intergenic | 15.0% |
| !!! | ATTATTAGTTTTCAAAGAAT+TGG | + | Chr6:20956308-20956327 | MsG0680031474.01.T01:intron | 15.0% |
| !!! | TCTTTTGTTACAATAATATT+TGG | + | Chr6:20956368-20956387 | MsG0680031474.01.T01:intron | 15.0% |
| !!! | TTTAGTTCATTATTAACTAT+AGG | + | Chr6:20956543-20956562 | MsG0680031474.01.T01:intron | 15.0% |
| !! | AACATACTCTTATCATATAA+GGG | - | Chr6:20956181-20956200 | None:intergenic | 20.0% |
| !! | AACTTAATGTCTTAAGTAAA+TGG | + | Chr6:20955789-20955808 | MsG0680031474.01.T01:five_prime_UTR | 20.0% |
| !! | ATAAAGTAAGAAAAAGTTGA+AGG | + | Chr6:20958763-20958782 | MsG0680031474.01.T01:three_prime_UTR | 20.0% |
| !! | TAACATACTCTTATCATATA+AGG | - | Chr6:20956182-20956201 | None:intergenic | 20.0% |
| !! | TCTGATTACATATTTGAAAA+TGG | + | Chr6:20957130-20957149 | MsG0680031474.01.T01:CDS | 20.0% |
| !!! | AAAAACTAATGTCATTTTCA+TGG | - | Chr6:20956453-20956472 | None:intergenic | 20.0% |
| !!! | AATCAACTTTTTCTTAATCT+TGG | + | Chr6:20955915-20955934 | MsG0680031474.01.T01:five_prime_UTR | 20.0% |
| !!! | AGATATATTGAGTCTTTTAT+TGG | - | Chr6:20956399-20956418 | None:intergenic | 20.0% |
| !!! | ATTTTGAAGAATAAGAGTTT+AGG | + | Chr6:20958812-20958831 | MsG0680031474.01.T01:three_prime_UTR | 20.0% |
| !!! | TAATTTCTGTTACTTCATTT+TGG | + | Chr6:20956505-20956524 | MsG0680031474.01.T01:intron | 20.0% |
| !!! | TAGAATTCTCAAATTTTCAT+TGG | - | Chr6:20956790-20956809 | None:intergenic | 20.0% |
| !!! | TAGTTTTTCATTTTCAGTTT+AGG | + | Chr6:20956465-20956484 | MsG0680031474.01.T01:intron | 20.0% |
| !!! | TTGTAATTTTGATAGATTCA+AGG | + | Chr6:20957440-20957459 | MsG0680031474.01.T01:intron | 20.0% |
| !!! | TTTTCAAATATGTAATCAGA+TGG | - | Chr6:20957130-20957149 | None:intergenic | 20.0% |
| !!! | TTTTTAAATCTAATGAAGAG+TGG | + | Chr6:20956975-20956994 | MsG0680031474.01.T01:five_prime_UTR | 20.0% |
| ! | AAAAAGAGAAAATCTTGTTC+AGG | + | Chr6:20958211-20958230 | MsG0680031474.01.T01:CDS | 25.0% |
| ! | AAAGTTTATAGTAAGCCATA+TGG | + | Chr6:20959080-20959099 | MsG0680031474.01.T01:three_prime_UTR | 25.0% |
| ! | AAGTGAAGAACAAAATAGAA+AGG | - | Chr6:20955867-20955886 | None:intergenic | 25.0% |
| ! | AGAAAGGATGAAAATGAAAA+GGG | - | Chr6:20955851-20955870 | None:intergenic | 25.0% |
| ! | ATATGAAAGATAGTAACTTG+TGG | + | Chr6:20958455-20958474 | MsG0680031474.01.T01:CDS | 25.0% |
| ! | ATGAACTAACAACAAATGAA+TGG | + | Chr6:20957996-20958015 | MsG0680031474.01.T01:CDS | 25.0% |
| ! | ATGTAATCAGATGGAATAAT+AGG | - | Chr6:20957121-20957140 | None:intergenic | 25.0% |
| ! | CATAAAAAATCTTGATGTCA+CGG | - | Chr6:20956241-20956260 | None:intergenic | 25.0% |
| ! | CTTGTTAACATAAAAACTGA+TGG | - | Chr6:20957040-20957059 | None:intergenic | 25.0% |
| ! | GTCTACAAGTTACTAATAAA+CGG | + | Chr6:20957808-20957827 | MsG0680031474.01.T01:intron | 25.0% |
| ! | TAGAAAGGATGAAAATGAAA+AGG | - | Chr6:20955852-20955871 | None:intergenic | 25.0% |
| ! | TATAGATAAGGAGAATGATA+GGG | + | Chr6:20957005-20957024 | MsG0680031474.01.T01:exon | 25.0% |
| ! | TCTTCACTTCTTAGTAAATA+TGG | + | Chr6:20955878-20955897 | MsG0680031474.01.T01:five_prime_UTR | 25.0% |
| ! | TCTTTAACAAACCAATTAAC+AGG | + | Chr6:20957941-20957960 | MsG0680031474.01.T01:intron | 25.0% |
| ! | TTCAAAGAATTGGAAATGAT+TGG | + | Chr6:20956318-20956337 | MsG0680031474.01.T01:intron | 25.0% |
| !! | AAATTGATTCAATCGATAAG+AGG | - | Chr6:20958989-20959008 | None:intergenic | 25.0% |
| !! | AAATTTTCATTGGAGGAATT+TGG | - | Chr6:20956780-20956799 | None:intergenic | 25.0% |
| !! | AATTCTCAAATTTTCATTGG+AGG | - | Chr6:20956787-20956806 | None:intergenic | 25.0% |
| !! | AGAAAAAGTTGATTTCTTCA+TGG | - | Chr6:20955909-20955928 | None:intergenic | 25.0% |
| !! | GTTTCTTTTATTAGTCAGTT+TGG | + | Chr6:20957307-20957326 | MsG0680031474.01.T01:intron | 25.0% |
| !! | TCAGTTTTTATGTTAACAAG+TGG | + | Chr6:20957040-20957059 | MsG0680031474.01.T01:CDS | 25.0% |
| !! | TTCTCTTTTTGTTCATGTTT+GGG | - | Chr6:20958201-20958220 | None:intergenic | 25.0% |
| !! | TTTCTCTTTTTGTTCATGTT+TGG | - | Chr6:20958202-20958221 | None:intergenic | 25.0% |
| !!! | AACAAGTTTTATGTAATTGG+AGG | + | Chr6:20958247-20958266 | MsG0680031474.01.T01:CDS | 25.0% |
| !!! | ACTTTGAAGTATGAGTTTTA+TGG | + | Chr6:20958702-20958721 | MsG0680031474.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTTTCCAGTGTTTTGAAAT+TGG | - | Chr6:20956936-20956955 | None:intergenic | 25.0% |
| !!! | GACAACAAGTTTTATGTAAT+TGG | + | Chr6:20958244-20958263 | MsG0680031474.01.T01:CDS | 25.0% |
| !!! | TGAATGTTTTGATGAACAAA+AGG | - | Chr6:20956655-20956674 | None:intergenic | 25.0% |
| !!! | TGTGTGAAAAAATGTCATTT+TGG | - | Chr6:20957910-20957929 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTTATTCTGCGAT+TGG | + | Chr6:20956214-20956233 | MsG0680031474.01.T01:intron | 25.0% |
| !!! | TTGTAATTTTGATAGATTCG+AGG | + | Chr6:20957848-20957867 | MsG0680031474.01.T01:intron | 25.0% |
| AACAAACCAATTAACAGGTA+TGG | + | Chr6:20957946-20957965 | MsG0680031474.01.T01:intron | 30.0% | |
| AACAACAAATGAATGGTTCA+AGG | + | Chr6:20958003-20958022 | MsG0680031474.01.T01:CDS | 30.0% | |
| ACAACAAATGAATGGTTCAA+GGG | + | Chr6:20958004-20958023 | MsG0680031474.01.T01:CDS | 30.0% | |
| ACAATATCCTTCAACATGTT+AGG | - | Chr6:20958346-20958365 | None:intergenic | 30.0% | |
| AGTGGTGAAATCTATAGATA+AGG | + | Chr6:20956993-20957012 | MsG0680031474.01.T01:five_prime_UTR | 30.0% | |
| ATAAACGAAAGAAACATACG+AGG | - | Chr6:20957607-20957626 | None:intergenic | 30.0% | |
| ATGAAAATGAAAAGGGTGAA+TGG | - | Chr6:20955844-20955863 | None:intergenic | 30.0% | |
| ATTAAACTGATAACAGCTCA+TGG | - | Chr6:20956071-20956090 | None:intergenic | 30.0% | |
| CAGCTGAATTTAAACATGTT+TGG | - | Chr6:20958141-20958160 | None:intergenic | 30.0% | |
| CTATAGATAAGGAGAATGAT+AGG | + | Chr6:20957004-20957023 | MsG0680031474.01.T01:exon | 30.0% | |
| GAAAACCATATGAAGTTGAA+AGG | - | Chr6:20955727-20955746 | None:intergenic | 30.0% | |
| GATGATATTACCAATCAATG+AGG | + | Chr6:20958910-20958929 | MsG0680031474.01.T01:three_prime_UTR | 30.0% | |
| GTAAAAGATCATTACCTAAG+TGG | + | Chr6:20956721-20956740 | MsG0680031474.01.T01:five_prime_UTR | 30.0% | |
| TGAACTAGAGACAATGATAT+TGG | + | Chr6:20956902-20956921 | MsG0680031474.01.T01:five_prime_UTR | 30.0% | |
| TTCCATGAAATGAAACCATA+TGG | - | Chr6:20959098-20959117 | None:intergenic | 30.0% | |
| TTGTTAACAACAGCTATAAG+AGG | - | Chr6:20958391-20958410 | None:intergenic | 30.0% | |
| TTTATGGATCAAGTAGTTGT+TGG | + | Chr6:20958718-20958737 | MsG0680031474.01.T01:three_prime_UTR | 30.0% | |
| TTTGATTCCTAACATGTTGA+AGG | + | Chr6:20958336-20958355 | MsG0680031474.01.T01:CDS | 30.0% | |
| ! | ACAATTCTGAAAACCAAACA+TGG | + | Chr6:20958167-20958186 | MsG0680031474.01.T01:CDS | 30.0% |
| ! | CCATTTGTTAGGAAAATAAG+TGG | - | Chr6:20955626-20955645 | None:intergenic | 30.0% |
| ! | GTTTTTATGTTAACAAGTGG+TGG | + | Chr6:20957043-20957062 | MsG0680031474.01.T01:CDS | 30.0% |
| ! | TCTTTACATGTGTCTTTTGT+CGG | + | Chr6:20957330-20957349 | MsG0680031474.01.T01:intron | 30.0% |
| ! | TGGAACTACTTGATAATCAT+TGG | + | Chr6:20959113-20959132 | MsG0680031474.01.T01:three_prime_UTR | 30.0% |
| !!! | CACATGTGTTTTTTGTTAGA+CGG | + | Chr6:20957639-20957658 | MsG0680031474.01.T01:intron | 30.0% |
| !!! | GTGTCTTTTGTTAGTTTGTT+TGG | + | Chr6:20957786-20957805 | MsG0680031474.01.T01:intron | 30.0% |
| !!! | TTGGTTATTTTAGTCCTTGT+AGG | + | Chr6:20957225-20957244 | MsG0680031474.01.T01:intron | 30.0% |
| AAAACCTCCAAATTAGGATG+AGG | - | Chr6:20958604-20958623 | None:intergenic | 35.0% | |
| AACCATATGAAGTTGAAAGG+TGG | - | Chr6:20955724-20955743 | None:intergenic | 35.0% | |
| ACTTGATGCTTCAACAAATG+AGG | + | Chr6:20958423-20958442 | MsG0680031474.01.T01:CDS | 35.0% | |
| AGAACATAATCTGCATCCTT+CGG | - | Chr6:20956858-20956877 | None:intergenic | 35.0% | |
| AGCCATATGGTTTCATTTCA+TGG | + | Chr6:20959093-20959112 | MsG0680031474.01.T01:three_prime_UTR | 35.0% | |
| AGGAATCAAATTCCACTTGT+TGG | - | Chr6:20958326-20958345 | None:intergenic | 35.0% | |
| AGTCTTCATATGTCTTTCGT+TGG | + | Chr6:20957360-20957379 | MsG0680031474.01.T01:intron | 35.0% | |
| ATCGACACAAACACACATTT+AGG | + | Chr6:20957468-20957487 | MsG0680031474.01.T01:intron | 35.0% | |
| ATTAGTCCTTGAATGAGTGA+TGG | + | Chr6:20957504-20957523 | MsG0680031474.01.T01:intron | 35.0% | |
| ATTCGAGGACTATAGTATAG+TGG | + | Chr6:20957863-20957882 | MsG0680031474.01.T01:intron | 35.0% | |
| ATTGGAGGACAAGATGAAAA+TGG | + | Chr6:20958262-20958281 | MsG0680031474.01.T01:CDS | 35.0% | |
| CAATCTCCATACCTGTTAAT+TGG | - | Chr6:20957955-20957974 | None:intergenic | 35.0% | |
| CTCAAATTTCACAATGACCT+GGG | - | Chr6:20958961-20958980 | None:intergenic | 35.0% | |
| GGTTTCCAATTTCAAAACAC+TGG | + | Chr6:20956928-20956947 | MsG0680031474.01.T01:five_prime_UTR | 35.0% | |
| GTTGCAGATACTTAGCAATA+AGG | + | Chr6:20956615-20956634 | MsG0680031474.01.T01:intron | 35.0% | |
| TAGACATCTTTATGCGTTTG+AGG | - | Chr6:20957717-20957736 | None:intergenic | 35.0% | |
| TAGAGACAATGATATTGGCA+AGG | + | Chr6:20956907-20956926 | MsG0680031474.01.T01:five_prime_UTR | 35.0% | |
| TCGACACAAACACACATTTA+GGG | + | Chr6:20957469-20957488 | MsG0680031474.01.T01:intron | 35.0% | |
| TGCATGGAAATACTAGCAAA+AGG | + | Chr6:20957396-20957415 | MsG0680031474.01.T01:intron | 35.0% | |
| TGCTTCAACAAATGAGGTAA+AGG | + | Chr6:20958429-20958448 | MsG0680031474.01.T01:CDS | 35.0% | |
| TTAACAACAGCTATAAGAGG+TGG | - | Chr6:20958388-20958407 | None:intergenic | 35.0% | |
| TTAACAGGTATGGAGATTGA+TGG | + | Chr6:20957956-20957975 | MsG0680031474.01.T01:intron | 35.0% | |
| TTACCTAAGTGGAGTTTCAT+TGG | + | Chr6:20956732-20956751 | MsG0680031474.01.T01:five_prime_UTR | 35.0% | |
| TTCATATGTCTTTCGTTGGT+CGG | + | Chr6:20957364-20957383 | MsG0680031474.01.T01:intron | 35.0% | |
| ! | AGTAACTTGTGGAAGAAGTT+AGG | + | Chr6:20958466-20958485 | MsG0680031474.01.T01:CDS | 35.0% |
| ! | CTCATCATGTGAAGTTTTCT+AGG | + | Chr6:20955948-20955967 | MsG0680031474.01.T01:five_prime_UTR | 35.0% |
| ! | GTAACTTGTGGAAGAAGTTA+GGG | + | Chr6:20958467-20958486 | MsG0680031474.01.T01:CDS | 35.0% |
| ! | GTGTTTTCCTCATCCTAATT+TGG | + | Chr6:20958594-20958613 | MsG0680031474.01.T01:CDS | 35.0% |
| ! | TCATCCTAATTTGGAGGTTT+TGG | + | Chr6:20958603-20958622 | MsG0680031474.01.T01:CDS | 35.0% |
| ! | TTTTCCTCATCCTAATTTGG+AGG | + | Chr6:20958597-20958616 | MsG0680031474.01.T01:CDS | 35.0% |
| !! | ATCTTGTTCAGGTTGTTACT+TGG | + | Chr6:20958222-20958241 | MsG0680031474.01.T01:CDS | 35.0% |
| !! | TGATCGTTTTGATACACTCA+TGG | - | Chr6:20957546-20957565 | None:intergenic | 35.0% |
| !! | TTGTCACTTTCTAGTGACAA+TGG | + | Chr6:20956813-20956832 | MsG0680031474.01.T01:five_prime_UTR | 35.0% |
| !!! | GTGTTTTTTGTTAGACGGTT+TGG | + | Chr6:20957644-20957663 | MsG0680031474.01.T01:intron | 35.0% |
| AAGCAAATTGTGTGTGGTAG+GGG | + | Chr6:20958631-20958650 | MsG0680031474.01.T01:CDS | 40.0% | |
| AGAAAAGGAAGCCATCAAGA+TGG | - | Chr6:20955669-20955688 | None:intergenic | 40.0% | |
| AGGAATTGGTGTGTGTTTGA+TGG | + | Chr6:20957070-20957089 | MsG0680031474.01.T01:CDS | 40.0% | |
| ATGGTCAATTCAAGTCATGC+AGG | + | Chr6:20957089-20957108 | MsG0680031474.01.T01:CDS | 40.0% | |
| CACACTCATGAACGTTTGTT+TGG | + | Chr6:20957754-20957773 | MsG0680031474.01.T01:intron | 40.0% | |
| CACTCCAAAACCTCCAAATT+AGG | - | Chr6:20958610-20958629 | None:intergenic | 40.0% | |
| CCATGTTGAATCCATCTTGA+TGG | + | Chr6:20955655-20955674 | MsG0680031474.01.T01:five_prime_UTR | 40.0% | |
| CGATAATAAGATACGAACCC+AGG | + | Chr6:20958941-20958960 | MsG0680031474.01.T01:three_prime_UTR | 40.0% | |
| GAAGCAAATTGTGTGTGGTA+GGG | + | Chr6:20958630-20958649 | MsG0680031474.01.T01:CDS | 40.0% | |
| GACCACCTTTCAACTTCATA+TGG | + | Chr6:20955719-20955738 | MsG0680031474.01.T01:five_prime_UTR | 40.0% | |
| GCTCAAATTTCACAATGACC+TGG | - | Chr6:20958962-20958981 | None:intergenic | 40.0% | |
| GGCACACATTTACTTGTTTC+AGG | + | Chr6:20957175-20957194 | MsG0680031474.01.T01:CDS | 40.0% | |
| GTCCATCAATGATAACACCA+AGG | + | Chr6:20958026-20958045 | MsG0680031474.01.T01:CDS | 40.0% | |
| GTTAGAGCTGATAACCAAGT+TGG | + | Chr6:20958499-20958518 | MsG0680031474.01.T01:CDS | 40.0% | |
| TAAATGTGTGCCTGCAGAAA+AGG | - | Chr6:20957167-20957186 | None:intergenic | 40.0% | |
| TAGTCCTTGTAGGTTTGAAG+CGG | + | Chr6:20957235-20957254 | MsG0680031474.01.T01:intron | 40.0% | |
| TCATCACTGAGACATGGTAA+TGG | - | Chr6:20956885-20956904 | None:intergenic | 40.0% | |
| TGGATCAAGTAGTTGTTGGT+TGG | + | Chr6:20958722-20958741 | MsG0680031474.01.T01:three_prime_UTR | 40.0% | |
| TGGTGTAGCACTCAAATCTT+TGG | + | Chr6:20958525-20958544 | MsG0680031474.01.T01:CDS | 40.0% | |
| TTAGGCAAGTTTGATCTCGA+GGG | + | Chr6:20958830-20958849 | MsG0680031474.01.T01:three_prime_UTR | 40.0% | |
| TTGGGAGTTCTTTCCATGTT+TGG | - | Chr6:20958183-20958202 | None:intergenic | 40.0% | |
| TTTAGGCAAGTTTGATCTCG+AGG | + | Chr6:20958829-20958848 | MsG0680031474.01.T01:three_prime_UTR | 40.0% | |
| ! | AATGGTGACGATCTAACATG+TGG | + | Chr6:20958280-20958299 | MsG0680031474.01.T01:CDS | 40.0% |
| ! | ACTTGGTTATCAGCTCTAAC+AGG | - | Chr6:20958499-20958518 | None:intergenic | 40.0% |
| ! | ACTTTTGCTTATGTTGCTGG+TGG | + | Chr6:20958076-20958095 | MsG0680031474.01.T01:CDS | 40.0% |
| ! | ATTGCTGCAAGTGTCGTAAT+TGG | + | Chr6:20957206-20957225 | MsG0680031474.01.T01:intron | 40.0% |
| ! | CCATCAAGATGGATTCAACA+TGG | - | Chr6:20955658-20955677 | None:intergenic | 40.0% |
| ! | CTAGCTTTCTCTTAACCTTC+AGG | - | Chr6:20958876-20958895 | None:intergenic | 40.0% |
| ! | GACACTTTTGCTTATGTTGC+TGG | + | Chr6:20958073-20958092 | MsG0680031474.01.T01:CDS | 40.0% |
| ! | GAGTGAGTTGGAACAAGAAA+AGG | - | Chr6:20955684-20955703 | None:intergenic | 40.0% |
| ! | GTTAAAGAGTCCTTTTCTGC+AGG | + | Chr6:20957154-20957173 | MsG0680031474.01.T01:CDS | 40.0% |
| ! | TCAAGATGGATTCAACATGG+AGG | - | Chr6:20955655-20955674 | None:intergenic | 40.0% |
| ! | TCTAGTTCATCACTGAGACA+TGG | - | Chr6:20956891-20956910 | None:intergenic | 40.0% |
| ! | TGTTAACAAGTGGTGGTGAA+AGG | + | Chr6:20957050-20957069 | MsG0680031474.01.T01:CDS | 40.0% |
| !! | AGATTGATGGCGCAGTTATA+TGG | + | Chr6:20957969-20957988 | MsG0680031474.01.T01:CDS | 40.0% |
| !! | CACCTTGGTGTTATCATTGA+TGG | - | Chr6:20958031-20958050 | None:intergenic | 40.0% |
| !! | TTGGTCTTGAATGTGTGAGA+GGG | - | Chr6:20957891-20957910 | None:intergenic | 40.0% |
| !! | TTTGGTCTTGAATGTGTGAG+AGG | - | Chr6:20957892-20957911 | None:intergenic | 40.0% |
| !!! | CTAATTTGGAGGTTTTGGAG+TGG | + | Chr6:20958608-20958627 | MsG0680031474.01.T01:CDS | 40.0% |
| AACACCGCTTCAAACCTACA+AGG | - | Chr6:20957242-20957261 | None:intergenic | 45.0% | |
| AAGTGGAGTTTCATTGGCAG+TGG | + | Chr6:20956738-20956757 | MsG0680031474.01.T01:five_prime_UTR | 45.0% | |
| AGCAAATTGTGTGTGGTAGG+GGG | + | Chr6:20958632-20958651 | MsG0680031474.01.T01:CDS | 45.0% | |
| ATGAGGTGATAGGAGTGAGT+TGG | - | Chr6:20955696-20955715 | None:intergenic | 45.0% | |
| CAAGGTCAAAGAAAGCCTGA+AGG | + | Chr6:20958858-20958877 | MsG0680031474.01.T01:three_prime_UTR | 45.0% | |
| CGATGTGAGACCTCATTGAT+TGG | - | Chr6:20958923-20958942 | None:intergenic | 45.0% | |
| CTGCCAATGAAACTCCACTT+AGG | - | Chr6:20956738-20956757 | None:intergenic | 45.0% | |
| CTTCAGGCTTTCTTTGACCT+TGG | - | Chr6:20958860-20958879 | None:intergenic | 45.0% | |
| GAGTGGAAGCAAATTGTGTG+TGG | + | Chr6:20958625-20958644 | MsG0680031474.01.T01:CDS | 45.0% | |
| GGAAGCAAATTGTGTGTGGT+AGG | + | Chr6:20958629-20958648 | MsG0680031474.01.T01:CDS | 45.0% | |
| GTGACACCATCACTCATTCA+AGG | - | Chr6:20957513-20957532 | None:intergenic | 45.0% | |
| GTTGAAAGGTGGTCAAGATG+AGG | - | Chr6:20955713-20955732 | None:intergenic | 45.0% | |
| TCGACGAAAAGACCAACAAG+TGG | + | Chr6:20958311-20958330 | MsG0680031474.01.T01:CDS | 45.0% | |
| ! | CAAGTGGTGGTGAAAGGAAT+TGG | + | Chr6:20957056-20957075 | MsG0680031474.01.T01:CDS | 45.0% |
| ! | GCTGATAACCAAGTTGGCTA+TGG | + | Chr6:20958505-20958524 | MsG0680031474.01.T01:CDS | 45.0% |
| ! | GCTTTTGCAAAGACACACCT+TGG | - | Chr6:20958046-20958065 | None:intergenic | 45.0% |
| ! | GGAGGCATACTCCATTTGTT+AGG | - | Chr6:20955637-20955656 | None:intergenic | 45.0% |
| ! | TGGTCGGTTTAGTCTATGCA+TGG | + | Chr6:20957380-20957399 | MsG0680031474.01.T01:intron | 45.0% |
| AGTGACAATGGTTCCTCCTC+AGG | + | Chr6:20956825-20956844 | MsG0680031474.01.T01:five_prime_UTR | 50.0% | |
| ATCCTTCGGTTCTTGACCTG+AGG | - | Chr6:20956844-20956863 | None:intergenic | 50.0% | |
| GGTGGTCAAGATGAGGTGAT+AGG | - | Chr6:20955706-20955725 | None:intergenic | 50.0% | |
| GTGCTACACCATAGCCAACT+TGG | - | Chr6:20958516-20958535 | None:intergenic | 50.0% | |
| TTGATCTCGAGGGTTCACCA+AGG | + | Chr6:20958840-20958859 | MsG0680031474.01.T01:three_prime_UTR | 50.0% | |
| CTCCTCAGGTCAAGAACCGA+AGG | + | Chr6:20956839-20956858 | MsG0680031474.01.T01:five_prime_UTR | 55.0% | |
| CTTCGGTTCTTGACCTGAGG+AGG | - | Chr6:20956841-20956860 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 20955624 | 20959206 | 20955624 | ID=MsG0680031474.01;Name=MsG0680031474.01 |
| Chr6 | mRNA | 20955624 | 20959206 | 20955624 | ID=MsG0680031474.01.T01;Parent=MsG0680031474.01;Name=MsG0680031474.01.T01;_AED=0.36;_eAED=0.36;_QI=743|1|1|1|0.5|0.33|3|507|304 |
| Chr6 | exon | 20955624 | 20955969 | 20955624 | ID=MsG0680031474.01.T01:exon:13263;Parent=MsG0680031474.01.T01 |
| Chr6 | exon | 20956622 | 20957196 | 20956622 | ID=MsG0680031474.01.T01:exon:13264;Parent=MsG0680031474.01.T01 |
| Chr6 | exon | 20957963 | 20959206 | 20957963 | ID=MsG0680031474.01.T01:exon:13265;Parent=MsG0680031474.01.T01 |
| Chr6 | five_prime_UTR | 20955624 | 20955969 | 20955624 | ID=MsG0680031474.01.T01:five_prime_utr;Parent=MsG0680031474.01.T01 |
| Chr6 | five_prime_UTR | 20956622 | 20957018 | 20956622 | ID=MsG0680031474.01.T01:five_prime_utr;Parent=MsG0680031474.01.T01 |
| Chr6 | CDS | 20957019 | 20957196 | 20957019 | ID=MsG0680031474.01.T01:cds;Parent=MsG0680031474.01.T01 |
| Chr6 | CDS | 20957963 | 20958699 | 20957963 | ID=MsG0680031474.01.T01:cds;Parent=MsG0680031474.01.T01 |
| Chr6 | three_prime_UTR | 20958700 | 20959206 | 20958700 | ID=MsG0680031474.01.T01:three_prime_utr;Parent=MsG0680031474.01.T01 |
| Gene Sequence |
| Protein sequence |
