AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010629.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010629.01.T01 MTR_2g089120 90.653 567 38 1 3 554 1 567 0.0 1068
MsG0280010629.01.T01 MTR_2g089130 79.965 564 97 2 3 551 1 563 0.0 943
MsG0280010629.01.T01 MTR_4g045810 38.866 494 267 9 64 531 74 558 9.83e-109 337
MsG0280010629.01.T01 MTR_2g065450 36.028 569 327 9 15 551 26 589 7.18e-105 327
MsG0280010629.01.T01 MTR_2g064425 35.649 547 340 6 15 551 26 570 1.47e-103 323
MsG0280010629.01.T01 MTR_2g064425 35.053 562 338 7 15 551 26 585 9.08e-103 322
MsG0280010629.01.T01 MTR_4g081460 35.586 503 292 8 57 531 41 539 2.37e-100 315
MsG0280010629.01.T01 MTR_4g092010 32.558 559 334 12 21 546 6 554 2.46e-96 305
MsG0280010629.01.T01 MTR_4g092020 34.706 510 304 8 62 547 62 566 3.05e-95 301
MsG0280010629.01.T01 MTR_8g057020 32.389 565 348 10 18 551 27 588 8.19e-92 293
MsG0280010629.01.T01 MTR_3g052120 32.869 502 306 8 74 546 13 512 3.98e-90 286
MsG0280010629.01.T01 MTR_6g008560 33.467 499 295 9 83 551 65 556 1.95e-89 286
MsG0280010629.01.T01 MTR_4g048460 33.396 536 315 12 45 551 38 560 3.67e-89 285
MsG0280010629.01.T01 MTR_6g039440 31.765 510 318 9 69 551 46 552 4.46e-89 285
MsG0280010629.01.T01 MTR_6g064980 33.992 506 295 11 74 546 13 512 1.35e-88 283
MsG0280010629.01.T01 MTR_2g010960 32.347 507 313 6 69 546 12 517 2.89e-88 282
MsG0280010629.01.T01 MTR_3g063120 33.737 495 290 9 89 550 3 492 4.63e-86 275
MsG0280010629.01.T01 MTR_3g063140 33.071 508 305 11 74 550 13 516 9.61e-86 275
MsG0280010629.01.T01 MTR_5g062230 32.941 510 306 9 72 551 49 552 1.17e-85 276
MsG0280010629.01.T01 MTR_5g094620 34.656 479 291 8 86 551 67 536 1.88e-85 275
MsG0280010629.01.T01 MTR_3g063170 31.028 506 318 7 74 550 13 516 5.78e-85 273
MsG0280010629.01.T01 MTR_3g465090 33.266 493 298 9 86 549 25 515 1.32e-84 272
MsG0280010629.01.T01 MTR_3g464190 33.682 478 283 7 83 532 64 535 3.30e-84 272
MsG0280010629.01.T01 MTR_7g010710 34.686 493 286 9 66 531 49 532 7.18e-84 271
MsG0280010629.01.T01 MTR_2g082010 33.333 504 302 10 73 546 63 562 1.30e-82 269
MsG0280010629.01.T01 MTR_2g081980 31.418 522 319 11 59 546 35 551 1.46e-81 266
MsG0280010629.01.T01 MTR_6g065040 36.567 402 241 8 142 534 2 398 1.49e-80 258
MsG0280010629.01.T01 MTR_5g073260 31.673 502 303 8 82 551 58 551 5.99e-80 261
MsG0280010629.01.T01 MTR_6g008560 34.406 404 256 6 153 551 1 400 9.93e-80 256
MsG0280010629.01.T01 MTR_5g073200 33.401 494 292 9 72 535 44 530 3.47e-78 256
MsG0280010629.01.T01 MTR_8g007515 32.353 510 298 12 62 535 39 537 2.62e-76 252
MsG0280010629.01.T01 MTR_4g048460 33.945 436 254 7 45 456 38 463 4.82e-75 246
MsG0280010629.01.T01 MTR_2g082060 32.866 499 287 13 80 546 65 547 1.78e-71 239
MsG0280010629.01.T01 MTR_2g064425 37.602 367 221 3 15 373 26 392 2.70e-69 229
MsG0280010629.01.T01 MTR_2g064425 36.649 382 219 4 15 373 26 407 2.18e-68 228
MsG0280010629.01.T01 MTR_2g082050 30.638 470 282 10 90 552 27 459 2.40e-65 220
MsG0280010629.01.T01 MTR_4g019550 29.842 506 297 13 84 550 70 556 1.32e-59 207
MsG0280010629.01.T01 MTR_3g063160 31.183 279 162 7 74 325 13 288 4.53e-35 134
MsG0280010629.01.T01 MTR_2g064295 24.696 494 321 12 85 531 252 741 2.85e-33 135
MsG0280010629.01.T01 MTR_2g012870 24.953 529 333 14 64 540 229 745 6.34e-33 134
MsG0280010629.01.T01 MTR_2g012900 26.305 479 281 14 64 480 229 697 2.09e-31 129
MsG0280010629.01.T01 MTR_3g058160 24.056 503 328 13 90 545 66 561 5.25e-31 127
MsG0280010629.01.T01 MTR_3g058160 24.056 503 328 13 90 545 270 765 1.25e-30 127
MsG0280010629.01.T01 MTR_3g058160 24.056 503 328 13 90 545 257 752 1.32e-30 127
MsG0280010629.01.T01 MTR_3g058160 24.056 503 328 13 90 545 277 772 1.42e-30 127
MsG0280010629.01.T01 MTR_3g058160 23.473 524 326 14 90 545 277 793 6.18e-28 119
MsG0280010629.01.T01 MTR_7g050990 40.252 159 80 2 205 363 36 179 9.32e-28 119
MsG0280010629.01.T01 MTR_5g094530 33.014 209 102 4 167 372 5 178 1.53e-27 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010629.01.T01 AT4G16730 39.689 514 272 8 73 551 28 538 3.59e-125 378
MsG0280010629.01.T01 AT4G16730 40.202 495 258 8 92 551 1 492 1.64e-124 375
MsG0280010629.01.T01 AT4G16740 36.293 518 296 8 63 551 51 563 2.15e-105 328
MsG0280010629.01.T01 AT2G24210 34.756 492 290 9 90 551 99 589 3.78e-98 310
MsG0280010629.01.T01 AT1G61680 35.318 487 290 7 82 546 86 569 3.94e-98 309
MsG0280010629.01.T01 AT3G25830 34.165 521 298 10 65 551 84 593 8.34e-98 309
MsG0280010629.01.T01 AT3G25820 34.165 521 298 10 65 551 84 593 8.34e-98 309
MsG0280010629.01.T01 AT1G61680 35.417 480 292 7 82 546 86 562 8.61e-98 308
MsG0280010629.01.T01 AT3G25810 33.800 500 289 11 90 551 101 596 5.83e-93 296
MsG0280010629.01.T01 AT5G23960 30.000 520 336 8 58 551 27 544 2.59e-78 256
MsG0280010629.01.T01 AT5G23960 30.077 522 335 9 58 551 27 546 3.16e-77 254
MsG0280010629.01.T01 AT1G70080 31.633 490 292 12 92 545 122 604 1.81e-72 243
MsG0280010629.01.T01 AT4G16740 37.092 337 186 5 63 373 51 387 1.60e-66 221
MsG0280010629.01.T01 AT3G25820 35.028 354 193 7 65 391 84 427 2.02e-64 217
MsG0280010629.01.T01 AT3G14490 29.980 507 320 11 72 550 95 594 3.16e-63 218
MsG0280010629.01.T01 AT1G33750 28.435 524 341 11 54 551 87 602 3.84e-60 209
MsG0280010629.01.T01 AT3G29410 28.970 466 304 7 90 531 13 475 1.20e-59 206
MsG0280010629.01.T01 AT3G29410 28.970 466 304 7 90 531 118 580 6.60e-59 206
MsG0280010629.01.T01 AT1G31950 27.955 533 346 11 50 551 81 606 4.21e-58 204
MsG0280010629.01.T01 AT1G31950 29.026 534 338 13 50 551 81 605 4.87e-58 204
MsG0280010629.01.T01 AT3G14540 28.947 494 313 11 90 551 113 600 1.11e-57 203
MsG0280010629.01.T01 AT3G14520 28.438 429 295 6 132 551 178 603 6.44e-54 193
MsG0280010629.01.T01 AT4G15870 27.273 539 344 14 20 532 60 576 9.83e-54 192
MsG0280010629.01.T01 AT5G48110 29.688 320 220 4 213 531 2 317 3.80e-51 179
MsG0280010629.01.T01 AT3G32030 25.636 511 346 8 72 552 98 604 7.99e-51 184
MsG0280010629.01.T01 AT5G44630 29.350 477 293 12 87 531 70 534 1.09e-50 183
MsG0280010629.01.T01 AT2G23230 29.278 526 312 14 66 546 84 594 1.19e-49 181
MsG0280010629.01.T01 AT4G13300 27.789 511 337 10 66 546 40 548 1.76e-49 179
MsG0280010629.01.T01 AT2G23230 29.367 521 313 14 66 546 84 589 3.44e-49 180
MsG0280010629.01.T01 AT4G16740 34.936 312 177 5 63 348 51 362 7.50e-49 174
MsG0280010629.01.T01 AT4G16740 34.936 312 177 5 63 348 51 362 7.50e-49 174
MsG0280010629.01.T01 AT1G31950 29.167 432 275 9 50 455 81 507 1.08e-48 177
MsG0280010629.01.T01 AT3G14540 30.127 395 241 9 90 455 113 501 2.13e-47 173
MsG0280010629.01.T01 AT4G13280 28.673 422 292 6 132 546 129 548 3.10e-47 173
MsG0280010629.01.T01 AT4G20230 27.115 461 309 8 92 527 131 589 7.34e-47 173
MsG0280010629.01.T01 AT4G20230 27.115 461 309 8 92 527 119 577 7.65e-47 173
MsG0280010629.01.T01 AT3G25820 34.828 290 152 7 65 327 84 363 7.39e-46 166
MsG0280010629.01.T01 AT3G25820 34.828 290 152 7 65 327 84 363 7.39e-46 166
MsG0280010629.01.T01 AT3G29110 28.175 504 310 12 67 531 84 574 1.27e-45 169
MsG0280010629.01.T01 AT3G29190 28.744 414 270 7 92 481 116 528 2.15e-45 169
MsG0280010629.01.T01 AT1G48820 27.426 474 313 12 67 532 92 542 7.05e-45 167
MsG0280010629.01.T01 AT1G66020 27.957 465 300 9 92 527 113 571 3.79e-44 166
MsG0280010629.01.T01 AT1G48800 29.167 480 297 15 90 537 118 586 6.72e-44 165
MsG0280010629.01.T01 AT4G20210 27.071 495 314 12 92 550 115 598 8.04e-44 165
MsG0280010629.01.T01 AT4G20200 28.419 468 294 9 92 527 119 577 8.44e-44 165
MsG0280010629.01.T01 AT4G13280 27.251 422 268 8 132 546 129 518 7.37e-38 147
MsG0280010629.01.T01 AT1G66020 33.929 280 153 6 92 343 113 388 9.06e-38 144
MsG0280010629.01.T01 AT1G79460 24.561 513 329 14 85 547 270 774 3.03e-28 120
MsG0280010629.01.T01 AT1G61120 25.296 423 263 8 84 463 280 692 3.33e-26 114

Find 118 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTGCTCGTTGTAATTT+TGG 0.081136 2:+72551172 MsG0280010629.01.T01:CDS
CGGTTAGTCCATGTTCTTTC+TGG 0.088351 2:-72555449 None:intergenic
TCCAAATATGTCTTAAAATT+TGG 0.090930 2:-72555649 None:intergenic
TTATATGAGGCATCATATTT+AGG 0.175329 2:+72554236 MsG0280010629.01.T01:CDS
ATTCCAAAAGAGTAGGTATT+TGG 0.197928 2:-72554445 None:intergenic
CCGGGGAAATTCTTCGACTA+TGG 0.229539 2:+72555797 MsG0280010629.01.T01:CDS
TAACCAAATACCTACTCTTT+TGG 0.241157 2:+72554442 MsG0280010629.01.T01:CDS
TTTAAGACATATTTGGATAA+TGG 0.251513 2:+72555655 MsG0280010629.01.T01:CDS
TATATGAGGCATCATATTTA+GGG 0.283045 2:+72554237 MsG0280010629.01.T01:CDS
ATATTTCTGCCAATTCTCTT+TGG 0.285413 2:-72554505 None:intergenic
TGAAGATAAGACCAAAAGTT+TGG 0.285905 2:+72552629 MsG0280010629.01.T01:CDS
GCCATTGTCATTGTATTTGC+AGG 0.288475 2:-72551115 None:intergenic
ATCACTTACCAATGACATTT+GGG 0.292181 2:+72554202 MsG0280010629.01.T01:CDS
GATGATATCTTTGACACTTA+TGG 0.293561 2:+72555192 MsG0280010629.01.T01:CDS
TTTGACTTGACCCAAACTTT+TGG 0.296123 2:-72552640 None:intergenic
CCAATTTGCCTGCCTACTTC+AGG 0.296197 2:-72554338 None:intergenic
CATTTCTTGAAGAAGCTAAA+TGG 0.310663 2:+72555608 MsG0280010629.01.T01:CDS
CTTCTAACCTTGCCATTCTT+AGG 0.311069 2:-72554385 None:intergenic
ATATATAAGACTGCGGTCTT+TGG 0.319806 2:+72556930 MsG0280010629.01.T01:three_prime_UTR
CAATTTGAATGACATGGTTC+TGG 0.331181 2:-72555126 None:intergenic
TTGCCACATCCCTTCAATTT+CGG 0.335451 2:+72552820 MsG0280010629.01.T01:CDS
ATACATGAAAATATGTTATA+TGG 0.345162 2:+72555389 MsG0280010629.01.T01:CDS
CTTGCCATTCTTAGGTGCTT+TGG 0.346897 2:-72554377 None:intergenic
AATCACTTACCAATGACATT+TGG 0.351614 2:+72554201 MsG0280010629.01.T01:CDS
CCTGAAGTAGGCAGGCAAAT+TGG 0.353627 2:+72554338 MsG0280010629.01.T01:CDS
ATGAAGGAAGAATACAAATA+AGG 0.356949 2:+72556537 MsG0280010629.01.T01:CDS
CCCAGGCTCTTCACTTGCTC+CGG 0.372004 2:+72555778 MsG0280010629.01.T01:CDS
GCTGGGGATTGGTCACCATT+TGG 0.377069 2:+72552737 MsG0280010629.01.T01:CDS
GACCAACGGAGTGCTTCTTA+TGG 0.384882 2:+72555088 MsG0280010629.01.T01:CDS
ATTAGGTGGTGGAAAGAGTT+GGG 0.386750 2:+72555033 MsG0280010629.01.T01:intron
GAAGCTAAATGGTTCAATAA+TGG 0.388219 2:+72555619 MsG0280010629.01.T01:CDS
GTCATTACACCAAAGAGAAT+TGG 0.404125 2:+72554496 MsG0280010629.01.T01:CDS
TTGAATTTAGCAATGCTTCT+CGG 0.408026 2:-72552671 None:intergenic
AACTTGGGAGGATATGTGAT+TGG 0.414855 2:+72552778 MsG0280010629.01.T01:CDS
ATACAAATAAGGATGCTACT+AGG 0.418565 2:+72556548 MsG0280010629.01.T01:CDS
CCATTCTTAGGTGCTTTGGA+AGG 0.418608 2:-72554373 None:intergenic
TCTATATGCAATTTCATTTG+TGG 0.420807 2:-72555424 None:intergenic
GGGTATGTTGAGTTTATATG+AGG 0.434234 2:+72554223 MsG0280010629.01.T01:CDS
ATCATCTTCAATGTTACAAT+AGG 0.441194 2:-72552699 None:intergenic
CTTTGGCTAAGTAGAAATAA+AGG 0.442738 2:+72556947 MsG0280010629.01.T01:three_prime_UTR
GGATGCTACTAGGGAATTTG+TGG 0.444878 2:+72556558 MsG0280010629.01.T01:CDS
GAAGATAAGACCAAAAGTTT+GGG 0.446624 2:+72552630 MsG0280010629.01.T01:CDS
ATTCTCTTTGGTGTAATGAC+TGG 0.447027 2:-72554493 None:intergenic
TGTGTTATCACAAATATAGA+AGG 0.448145 2:+72551081 None:intergenic
ATGCATGCCACCTTCCTCAT+TGG 0.449603 2:+72555709 MsG0280010629.01.T01:CDS
TCAATCCAAGGGCTGGGGAT+TGG 0.453647 2:+72552726 MsG0280010629.01.T01:CDS
TAGGTGCTTTGGAAGGGTTA+AGG 0.456059 2:-72554366 None:intergenic
GCCTGCCTACTTCAGGACTA+AGG 0.459721 2:-72554331 None:intergenic
CAACATACCCCAAATGTCAT+TGG 0.463701 2:-72554210 None:intergenic
CATAACTAGCAAAATACATA+TGG 0.467636 2:-72555169 None:intergenic
CCAGGCTCTTCACTTGCTCC+GGG 0.468250 2:+72555779 MsG0280010629.01.T01:CDS
GATAATGGAGTGATTTCTGC+AGG 0.473286 2:+72555670 MsG0280010629.01.T01:CDS
ATTGACTCAATCCAAGGGCT+GGG 0.473312 2:+72552720 MsG0280010629.01.T01:CDS
TTGGGACTTGTTGACAAACT+TGG 0.473750 2:+72555051 MsG0280010629.01.T01:CDS
GATTGACTCAATCCAAGGGC+TGG 0.474173 2:+72552719 MsG0280010629.01.T01:CDS
GTCTTATCTTCAGTTTGTAA+AGG 0.481471 2:-72552618 None:intergenic
GATTAGGTGGTGGAAAGAGT+TGG 0.483866 2:+72555032 MsG0280010629.01.T01:intron
TACAAATAAGGATGCTACTA+GGG 0.488175 2:+72556549 MsG0280010629.01.T01:CDS
CTTCGACTATGGGATGACTT+AGG 0.488396 2:+72555808 MsG0280010629.01.T01:CDS
CGGGGAAATTCTTCGACTAT+GGG 0.489879 2:+72555798 MsG0280010629.01.T01:CDS
CATTGATCTCATCTTCCAAA+TGG 0.495809 2:-72552752 None:intergenic
ACTTGGGAGGATATGTGATT+GGG 0.499523 2:+72552779 MsG0280010629.01.T01:CDS
GGTGACCAATCCCCAGCCCT+TGG 0.500245 2:-72552731 None:intergenic
GCCACCTTCCTCATTGGTGA+TGG 0.504456 2:+72555715 MsG0280010629.01.T01:CDS
CATTCTTAGGTGCTTTGGAA+GGG 0.508082 2:-72554372 None:intergenic
GCCTCAGTAACCGAAATTGA+AGG 0.515765 2:-72552830 None:intergenic
AATATTTCAGATGAAAATGA+AGG 0.518222 2:+72556521 MsG0280010629.01.T01:CDS
GATTTCTGCAGGATCATGTA+TGG 0.522815 2:+72555681 MsG0280010629.01.T01:CDS
GAGTGCTTCTTATGGACAGT+AGG 0.523662 2:+72555096 MsG0280010629.01.T01:CDS
CCTTCCAAAGCACCTAAGAA+TGG 0.525082 2:+72554373 MsG0280010629.01.T01:CDS
GGGATATGACTTCATCATCA+TGG 0.527240 2:-72555758 None:intergenic
ACCTTAGTCCTGAAGTAGGC+AGG 0.530056 2:+72554330 MsG0280010629.01.T01:CDS
GAGAATTGGCAGAAATATGC+AGG 0.535303 2:+72554510 MsG0280010629.01.T01:CDS
CAGATGGGACCTTGATGCAA+TGG 0.543941 2:+72555353 MsG0280010629.01.T01:intron
GAAGTTGTTCCATTGCATCA+AGG 0.549004 2:-72555362 None:intergenic
ACGAGCCCTTGAAAATTCCA+TGG 0.555738 2:-72554288 None:intergenic
GTTCAGGAGGAACAAGAAAG+AGG 0.555777 2:+72556458 MsG0280010629.01.T01:intron
CCCGGAGCAAGTGAAGAGCC+TGG 0.558035 2:-72555779 None:intergenic
TAACCGAAATTGAAGGGATG+TGG 0.558085 2:-72552823 None:intergenic
AGGTAATGATGTGAAGATCA+AGG 0.564747 2:-72556723 None:intergenic
TTTGCCAATTCCAAAAGAGT+AGG 0.571866 2:-72554452 None:intergenic
GATGAGATCAATGTTCAACT+TGG 0.572324 2:+72552762 MsG0280010629.01.T01:CDS
ATGCGGCAATTTGAATGACA+TGG 0.572463 2:-72555132 None:intergenic
AAGATGATTGACTCAATCCA+AGG 0.578634 2:+72552714 MsG0280010629.01.T01:CDS
GTCCATTGCTCTCAATGAGA+AGG 0.579260 2:+72551273 MsG0280010629.01.T01:CDS
CCACACCTTAGTCCTGAAGT+AGG 0.581171 2:+72554326 MsG0280010629.01.T01:CDS
CCTCAGTAACCGAAATTGAA+GGG 0.583119 2:-72552829 None:intergenic
CCGGAGCAAGTGAAGAGCCT+GGG 0.583946 2:-72555778 None:intergenic
TGATGATGAAGTCATATCCC+AGG 0.589646 2:+72555761 MsG0280010629.01.T01:CDS
CTACTTCAGGACTAAGGTGT+GGG 0.590174 2:-72554325 None:intergenic
TACCTTCTCATTGAGAGCAA+TGG 0.593656 2:-72551275 None:intergenic
CATTGGTGATGGTCTCTCAA+AGG 0.594573 2:+72555726 MsG0280010629.01.T01:CDS
ATGAGATCAATGTTCAACTT+GGG 0.595916 2:+72552763 MsG0280010629.01.T01:CDS
TATCAAAGCTTCTCTTAACA+TGG 0.598838 2:+72556628 MsG0280010629.01.T01:CDS
TATAGAATCCAGAAAGAACA+TGG 0.603675 2:+72555441 MsG0280010629.01.T01:CDS
CCATAGTCGAAGAATTTCCC+CGG 0.608178 2:-72555797 None:intergenic
GTCCATAAGAAGCACTCCGT+TGG 0.609668 2:-72555090 None:intergenic
TTGACTCAATCCAAGGGCTG+GGG 0.610758 2:+72552721 MsG0280010629.01.T01:CDS
TCAAATTCAAGGATTATGCA+TGG 0.614482 2:+72551235 MsG0280010629.01.T01:CDS
AGTGCTTCTTATGGACAGTA+GGG 0.615566 2:+72555097 MsG0280010629.01.T01:CDS
AGATCAATGTTCAACTTGGG+AGG 0.619212 2:+72552766 MsG0280010629.01.T01:CDS
GTGGCAAAGAGGTCTTGAGA+AGG 0.619717 2:-72552804 None:intergenic
GCTCAAGTTATTTATCAACA+TGG 0.621098 2:+72556659 MsG0280010629.01.T01:CDS
GAGACCATCACCAATGAGGA+AGG 0.621909 2:-72555719 None:intergenic
CCTACTTCAGGACTAAGGTG+TGG 0.623254 2:-72554326 None:intergenic
CAAAGCACCTAAGAATGGCA+AGG 0.625330 2:+72554378 MsG0280010629.01.T01:CDS
TGGCAAAGAGGTCTTGAGAA+GGG 0.625651 2:-72552803 None:intergenic
GCCTGCAAATACAATGACAA+TGG 0.627016 2:+72551114 MsG0280010629.01.T01:exon
GGATGACTTAGGAACTTCAA+CGG 0.635407 2:+72555819 MsG0280010629.01.T01:CDS
GTTTATTATATATAAGACTG+CGG 0.646931 2:+72556923 MsG0280010629.01.T01:three_prime_UTR
TTGAGAGACCATCACCAATG+AGG 0.655213 2:-72555723 None:intergenic
AGATGATTGACTCAATCCAA+GGG 0.655644 2:+72552715 MsG0280010629.01.T01:CDS
ATTGAAGGGATGTGGCAAAG+AGG 0.660331 2:-72552815 None:intergenic
TCACTTACCAATGACATTTG+GGG 0.667503 2:+72554203 MsG0280010629.01.T01:CDS
ACCATCACCAATGAGGAAGG+TGG 0.672270 2:-72555716 None:intergenic
CAGGCTCTTCACTTGCTCCG+GGG 0.678340 2:+72555780 MsG0280010629.01.T01:CDS
AATTTGTGGAGAGAACTCAA+TGG 0.695889 2:+72556572 MsG0280010629.01.T01:CDS
GAAGCTTTGATAACAGACGA+AGG 0.721487 2:-72556617 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATTAATAAATAAA+GGG + Chr2:72555862-72555881 MsG0280010629.01.T01:intron 0.0%
!! AAAATTAGTTACTATAATTT+AGG - Chr2:72552158-72552177 None:intergenic 10.0%
!! AAAATTTCATCTTTAAATAT+CGG - Chr2:72554836-72554855 None:intergenic 10.0%
!! AAATTAGTTACTATAATTTA+GGG - Chr2:72552157-72552176 None:intergenic 10.0%
!! ACAACAAAATATTTAATTAA+AGG + Chr2:72554556-72554575 MsG0280010629.01.T01:intron 10.0%
!! ACTCAATAAAAAAATAAATT+TGG - Chr2:72553042-72553061 None:intergenic 10.0%
!! TTAAATATACATTATATAAG+AGG + Chr2:72553205-72553224 MsG0280010629.01.T01:intron 10.0%
!!! AATCAGTTTTTAAAATAATA+TGG + Chr2:72552491-72552510 MsG0280010629.01.T01:intron 10.0%
!!! AGTATTTTATTTGAAAAATA+GGG + Chr2:72556786-72556805 MsG0280010629.01.T01:three_prime_UTR 10.0%
!!! CAAATTTAAATTTTTATTAG+TGG + Chr2:72556252-72556271 MsG0280010629.01.T01:intron 10.0%
!!! TAGTATTTTATTTGAAAAAT+AGG + Chr2:72556785-72556804 MsG0280010629.01.T01:three_prime_UTR 10.0%
!!! TTATTAATTAATTTTCAGTA+GGG - Chr2:72555857-72555876 None:intergenic 10.0%
!!! TTTAATTAAATATTTTGTTG+TGG - Chr2:72554557-72554576 None:intergenic 10.0%
!!! TTTATTAATTAATTTTCAGT+AGG - Chr2:72555858-72555877 None:intergenic 10.0%
!!! TTTTTCAAATAAAATACTAT+AGG - Chr2:72556784-72556803 None:intergenic 10.0%
!! AAATAAAAAGATGTGATTTA+CGG - Chr2:72552449-72552468 None:intergenic 15.0%
!! ACAAAATATTTAATTAAAGG+TGG + Chr2:72554559-72554578 MsG0280010629.01.T01:intron 15.0%
!! AGAAATAAAAAGAATGAATT+TGG - Chr2:72553152-72553171 None:intergenic 15.0%
!! ATACATGAAAATATGTTATA+TGG + Chr2:72555389-72555408 MsG0280010629.01.T01:CDS 15.0%
!! TAAATTTAAATTCATTGTTG+TGG + Chr2:72551554-72551573 MsG0280010629.01.T01:intron 15.0%
!! TTAAGAAAATGTTTATTCTA+TGG - Chr2:72553516-72553535 None:intergenic 15.0%
!! TTATTTGTAAAATTGTTTGA+AGG + Chr2:72551863-72551882 MsG0280010629.01.T01:intron 15.0%
!!! AATATTTTTATTAGTGGTAA+AGG + Chr2:72556077-72556096 MsG0280010629.01.T01:intron 15.0%
!!! AATTATAGTAACTAATTTTG+CGG + Chr2:72552159-72552178 MsG0280010629.01.T01:intron 15.0%
!!! ATTCAATATTGATTTAGATT+TGG - Chr2:72554779-72554798 None:intergenic 15.0%
!!! ATTGATGATTATATAAGATA+GGG - Chr2:72551319-72551338 None:intergenic 15.0%
!!! CAAATTTAAATTTTTATCAG+TGG + Chr2:72556010-72556029 MsG0280010629.01.T01:intron 15.0%
!!! CATTATATTTTTTTTTGACA+AGG + Chr2:72553855-72553874 MsG0280010629.01.T01:intron 15.0%
!!! TATTGATGATTATATAAGAT+AGG - Chr2:72551320-72551339 None:intergenic 15.0%
!!! TCTAAGACAATATTTTATAA+GGG - Chr2:72552539-72552558 None:intergenic 15.0%
!!! TCTTTTTATTTAGAAGTAAA+TGG + Chr2:72552458-72552477 MsG0280010629.01.T01:intron 15.0%
!!! TTCTAAGACAATATTTTATA+AGG - Chr2:72552540-72552559 None:intergenic 15.0%
!!! TTTATTACAATTTGTTTCAT+AGG - Chr2:72556392-72556411 None:intergenic 15.0%
!! AAGTTGAATATAAAAGTTCT+AGG + Chr2:72551700-72551719 MsG0280010629.01.T01:intron 20.0%
!! AATATTTCAGATGAAAATGA+AGG + Chr2:72556521-72556540 MsG0280010629.01.T01:CDS 20.0%
!! AGAAATATTAAAAAAAGCCA+TGG + Chr2:72554271-72554290 MsG0280010629.01.T01:CDS 20.0%
!! AGCATCTTCTTAAAAAATAA+AGG + Chr2:72551762-72551781 MsG0280010629.01.T01:intron 20.0%
!! GCATCTTCTTAAAAAATAAA+GGG + Chr2:72551763-72551782 MsG0280010629.01.T01:intron 20.0%
!! GTTTATTATATATAAGACTG+CGG + Chr2:72556923-72556942 MsG0280010629.01.T01:three_prime_UTR 20.0%
!! TAAATCTTATGTAGAAATGA+AGG + Chr2:72551808-72551827 MsG0280010629.01.T01:intron 20.0%
!! TATAAATTTGTATCTACTCA+AGG - Chr2:72556302-72556321 None:intergenic 20.0%
!! TCCAAATATGTCTTAAAATT+TGG - Chr2:72555652-72555671 None:intergenic 20.0%
!! TGTAAGTATAATTCACTTAA+TGG - Chr2:72553665-72553684 None:intergenic 20.0%
!! TTTGTTCTCAAATAGTTTAA+TGG + Chr2:72553557-72553576 MsG0280010629.01.T01:intron 20.0%
!!! AAACTTTATGTTTTACAGAT+GGG + Chr2:72555338-72555357 MsG0280010629.01.T01:intron 20.0%
!!! AATCATCAATATGAAGTTTT+GGG + Chr2:72551329-72551348 MsG0280010629.01.T01:intron 20.0%
!!! ACTTGTCAAAATCAATTTTA+AGG - Chr2:72551438-72551457 None:intergenic 20.0%
!!! ATATCAAACTGATTTATGTT+TGG - Chr2:72551649-72551668 None:intergenic 20.0%
!!! CTAGTTTATTTGATTTGATT+AGG + Chr2:72555016-72555035 MsG0280010629.01.T01:intron 20.0%
!!! GGATCATTTTTTTTTTTTGA+AGG + Chr2:72556882-72556901 MsG0280010629.01.T01:three_prime_UTR 20.0%
!!! GTTTGTTTTAAGATGTTATT+GGG + Chr2:72552362-72552381 MsG0280010629.01.T01:intron 20.0%
!!! TAAACTTTATGTTTTACAGA+TGG + Chr2:72555337-72555356 MsG0280010629.01.T01:intron 20.0%
!!! TAAATGACATATTTTTGTCA+TGG + Chr2:72556861-72556880 MsG0280010629.01.T01:three_prime_UTR 20.0%
!!! TAACATATTTTCATGTATTC+AGG - Chr2:72555387-72555406 None:intergenic 20.0%
!!! TAATCATCAATATGAAGTTT+TGG + Chr2:72551328-72551347 MsG0280010629.01.T01:intron 20.0%
!!! TCTTACTAATTTTTATGTTC+AGG + Chr2:72556442-72556461 MsG0280010629.01.T01:intron 20.0%
!!! TGTTTGTTTTAAGATGTTAT+TGG + Chr2:72552361-72552380 MsG0280010629.01.T01:intron 20.0%
!!! TTTAAGACATATTTGGATAA+TGG + Chr2:72555655-72555674 MsG0280010629.01.T01:CDS 20.0%
!!! TTTATAAGTATTGTATAAGC+AGG + Chr2:72554042-72554061 MsG0280010629.01.T01:intron 20.0%
!!! TTTTCAACTCAATTTTTAGT+AGG - Chr2:72556746-72556765 None:intergenic 20.0%
! AAATAGACTTAGTAGAAATC+AGG + Chr2:72553760-72553779 MsG0280010629.01.T01:intron 25.0%
! AAATAGTAATGCAATATACC+AGG - Chr2:72552876-72552895 None:intergenic 25.0%
! AATTCAATCAATTTCATGGT+TGG + Chr2:72551612-72551631 MsG0280010629.01.T01:intron 25.0%
! AATTGCAAGTGATTTATGTT+TGG - Chr2:72551596-72551615 None:intergenic 25.0%
! AATTTAGGGAAACTTGTATA+TGG - Chr2:72552143-72552162 None:intergenic 25.0%
! ACTGTATATGTTTGTTTCAT+TGG - Chr2:72553486-72553505 None:intergenic 25.0%
! ATCATCTTCAATGTTACAAT+AGG - Chr2:72552702-72552721 None:intergenic 25.0%
! ATGAAGGAAGAATACAAATA+AGG + Chr2:72556537-72556556 MsG0280010629.01.T01:CDS 25.0%
! ATTATTAACATGTCACTCTT+TGG - Chr2:72555542-72555561 None:intergenic 25.0%
! CAAATAACACACTGTATAAT+TGG - Chr2:72551850-72551869 None:intergenic 25.0%
! CAATCAAAACATAATAGCAT+AGG + Chr2:72552969-72552988 MsG0280010629.01.T01:intron 25.0%
! CATAACTAGCAAAATACATA+TGG - Chr2:72555172-72555191 None:intergenic 25.0%
! CATGTTAATAATTGTAGACT+TGG + Chr2:72555550-72555569 MsG0280010629.01.T01:intron 25.0%
! CTGTATATGTTTGTTTCATT+GGG - Chr2:72553485-72553504 None:intergenic 25.0%
! TCATAATTTCACACATTCAT+CGG + Chr2:72554608-72554627 MsG0280010629.01.T01:intron 25.0%
! TCATGGATATTGAATATGTT+GGG - Chr2:72553640-72553659 None:intergenic 25.0%
! TCATTGGGAATATTTGTATA+GGG - Chr2:72553470-72553489 None:intergenic 25.0%
! TCTATATGCAATTTCATTTG+TGG - Chr2:72555427-72555446 None:intergenic 25.0%
! TGGTATATTGCATTACTATT+TGG + Chr2:72552875-72552894 MsG0280010629.01.T01:intron 25.0%
! TTCATGGATATTGAATATGT+TGG - Chr2:72553641-72553660 None:intergenic 25.0%
! TTCATTGGGAATATTTGTAT+AGG - Chr2:72553471-72553490 None:intergenic 25.0%
! TTGCAATTCAATCAATTTCA+TGG + Chr2:72551608-72551627 MsG0280010629.01.T01:intron 25.0%
!! AATTTGTTTCATAGGAATCA+TGG - Chr2:72556384-72556403 None:intergenic 25.0%
!! ACATAAAGTTTAGTTTAGCA+TGG - Chr2:72555329-72555348 None:intergenic 25.0%
!! CATATGTATTTTGCTAGTTA+TGG + Chr2:72555170-72555189 MsG0280010629.01.T01:CDS 25.0%
!! CTTTGAATTTTCTTATGCTT+TGG + Chr2:72552916-72552935 MsG0280010629.01.T01:intron 25.0%
!! TACTAATTTTTATGTTCAGG+AGG + Chr2:72556445-72556464 MsG0280010629.01.T01:intron 25.0%
!! TATATGAGGCATCATATTTA+GGG + Chr2:72554237-72554256 MsG0280010629.01.T01:CDS 25.0%
!! TCTACACTTTTCTATATTCA+GGG - Chr2:72553596-72553615 None:intergenic 25.0%
!! TTATATGAGGCATCATATTT+AGG + Chr2:72554236-72554255 MsG0280010629.01.T01:CDS 25.0%
!! TTCTACACTTTTCTATATTC+AGG - Chr2:72553597-72553616 None:intergenic 25.0%
!!! AAATCAGAGTTTTGATTTTG+TGG + Chr2:72553230-72553249 MsG0280010629.01.T01:intron 25.0%
!!! AATCAGAGTTTTGATTTTGT+GGG + Chr2:72553231-72553250 MsG0280010629.01.T01:intron 25.0%
!!! AATTGATTTTGACAAGTTTG+TGG + Chr2:72551441-72551460 MsG0280010629.01.T01:intron 25.0%
!!! ACTAGTTTTTTACTGAAAGA+AGG - Chr2:72553929-72553948 None:intergenic 25.0%
!!! AGATGTTTTCAGGATTTTTT+TGG + Chr2:72554157-72554176 MsG0280010629.01.T01:intron 25.0%
!!! AGTGTGTTTGTTTTTACTAT+AGG + Chr2:72551392-72551411 MsG0280010629.01.T01:intron 25.0%
!!! CGGTTGCTAATTTAATTTTT+TGG - Chr2:72554816-72554835 None:intergenic 25.0%
!!! GCCAAATTTTAAGACATATT+TGG + Chr2:72555648-72555667 MsG0280010629.01.T01:CDS 25.0%
!!! GTCAAAATCAATTTTAAGGT+TGG - Chr2:72551434-72551453 None:intergenic 25.0%
!!! GTGTGTTTGTTTTTACTATA+GGG + Chr2:72551393-72551412 MsG0280010629.01.T01:intron 25.0%
!!! GTTTATTTGATTTGATTAGG+TGG + Chr2:72555019-72555038 MsG0280010629.01.T01:intron 25.0%
!!! TTCTACTAAGTCTATTTTGA+TGG - Chr2:72553757-72553776 None:intergenic 25.0%
!!! TTTTTTTTGAAGGAATGTCA+TGG + Chr2:72556892-72556911 MsG0280010629.01.T01:three_prime_UTR 25.0%
AAAATAAAGGGTTATGCTAG+AGG + Chr2:72551775-72551794 MsG0280010629.01.T01:intron 30.0%
AAAGGTGGAAGAAATTGATT+TGG + Chr2:72554574-72554593 MsG0280010629.01.T01:intron 30.0%
AATCACTTACCAATGACATT+TGG + Chr2:72554201-72554220 MsG0280010629.01.T01:CDS 30.0%
AGAGGTCTAGGTTTATATAT+GGG - Chr2:72553109-72553128 None:intergenic 30.0%
ATACAAATAAGGATGCTACT+AGG + Chr2:72556548-72556567 MsG0280010629.01.T01:CDS 30.0%
ATATCACTTAAGTGAGTGTT+TGG + Chr2:72553271-72553290 MsG0280010629.01.T01:intron 30.0%
ATCACTTACCAATGACATTT+GGG + Chr2:72554202-72554221 MsG0280010629.01.T01:CDS 30.0%
ATGAGATCAATGTTCAACTT+GGG + Chr2:72552763-72552782 MsG0280010629.01.T01:CDS 30.0%
ATTCCAAAAGAGTAGGTATT+TGG - Chr2:72554448-72554467 None:intergenic 30.0%
ATTGGGAATATTTGTATAGG+GGG - Chr2:72553468-72553487 None:intergenic 30.0%
ATTTGATTAGTGTGGTTGTT+TGG + Chr2:72554130-72554149 MsG0280010629.01.T01:intron 30.0%
CATGGATATTGAATATGTTG+GGG - Chr2:72553639-72553658 None:intergenic 30.0%
CATTGGGAATATTTGTATAG+GGG - Chr2:72553469-72553488 None:intergenic 30.0%
CATTTCTTGAAGAAGCTAAA+TGG + Chr2:72555608-72555627 MsG0280010629.01.T01:CDS 30.0%
CCAATAATACATGTCAGTAT+AGG - Chr2:72553983-72554002 None:intergenic 30.0%
CCTATACTGACATGTATTAT+TGG + Chr2:72553980-72553999 MsG0280010629.01.T01:intron 30.0%
CGCTACAAAAATCAAATTCA+AGG + Chr2:72551224-72551243 MsG0280010629.01.T01:CDS 30.0%
CTTTGGCTAAGTAGAAATAA+AGG + Chr2:72556947-72556966 MsG0280010629.01.T01:three_prime_UTR 30.0%
GAAGATAAGACCAAAAGTTT+GGG + Chr2:72552630-72552649 MsG0280010629.01.T01:CDS 30.0%
GAAGCTAAATGGTTCAATAA+TGG + Chr2:72555619-72555638 MsG0280010629.01.T01:CDS 30.0%
GATGATATCTTTGACACTTA+TGG + Chr2:72555192-72555211 MsG0280010629.01.T01:CDS 30.0%
GCTCAAGTTATTTATCAACA+TGG + Chr2:72556659-72556678 MsG0280010629.01.T01:CDS 30.0%
GTCTTATCTTCAGTTTGTAA+AGG - Chr2:72552621-72552640 None:intergenic 30.0%
TAATTCACTTAATGGCTTCA+TGG - Chr2:72553657-72553676 None:intergenic 30.0%
TACAAATAAGGATGCTACTA+GGG + Chr2:72556549-72556568 MsG0280010629.01.T01:CDS 30.0%
TACATGACATAATGACCTTA+TGG + Chr2:72553681-72553700 MsG0280010629.01.T01:intron 30.0%
TAGAGGTCTAGGTTTATATA+TGG - Chr2:72553110-72553129 None:intergenic 30.0%
TATAGAATCCAGAAAGAACA+TGG + Chr2:72555441-72555460 MsG0280010629.01.T01:CDS 30.0%
TATCAAAGCTTCTCTTAACA+TGG + Chr2:72556628-72556647 MsG0280010629.01.T01:CDS 30.0%
TCAAATTCAAGGATTATGCA+TGG + Chr2:72551235-72551254 MsG0280010629.01.T01:CDS 30.0%
TGAAGATAAGACCAAAAGTT+TGG + Chr2:72552629-72552648 MsG0280010629.01.T01:CDS 30.0%
TTCAAAGCATATACATGAAG+TGG - Chr2:72552903-72552922 None:intergenic 30.0%
TTCATGGCAGAAATTAATGT+TGG - Chr2:72554933-72554952 None:intergenic 30.0%
TTGAATTTAGCAATGCTTCT+CGG - Chr2:72552674-72552693 None:intergenic 30.0%
! AAAAAGCCATGGAATTTTCA+AGG + Chr2:72554282-72554301 MsG0280010629.01.T01:CDS 30.0%
! AAAAGCCATGGAATTTTCAA+GGG + Chr2:72554283-72554302 MsG0280010629.01.T01:CDS 30.0%
! ACATTTGCTCGTTGTAATTT+TGG + Chr2:72551172-72551191 MsG0280010629.01.T01:CDS 30.0%
! ACTTGATGATTTGATTAGTG+TGG + Chr2:72554122-72554141 MsG0280010629.01.T01:intron 30.0%
! AGATTCTTACTGTTCTTTTC+AGG - Chr2:72555485-72555504 None:intergenic 30.0%
! AGTAGACAAAAAGAAGTATG+AGG - Chr2:72554965-72554984 None:intergenic 30.0%
! ATATTTCTGCCAATTCTCTT+TGG - Chr2:72554508-72554527 None:intergenic 30.0%
! CACTTAAGTGATATACCTTT+TGG - Chr2:72553265-72553284 None:intergenic 30.0%
! CATTTGCTCGTTGTAATTTT+GGG + Chr2:72551173-72551192 MsG0280010629.01.T01:CDS 30.0%
! GTTTGGTTATAGATGTTTTC+AGG + Chr2:72554147-72554166 MsG0280010629.01.T01:intron 30.0%
! TAACCAAATACCTACTCTTT+TGG + Chr2:72554442-72554461 MsG0280010629.01.T01:CDS 30.0%
! TGGTTTTTGTAAGTTCAATG+CGG - Chr2:72555152-72555171 None:intergenic 30.0%
! TTTTCACAAAGGCAATCAAA+AGG + Chr2:72555235-72555254 MsG0280010629.01.T01:CDS 30.0%
! TTTTGAACTCAACTCTTACA+CGG - Chr2:72552214-72552233 None:intergenic 30.0%
!! TAATGACTTGTTTGGTTATG+CGG - Chr2:72553416-72553435 None:intergenic 30.0%
!! TATTTGATTTGATTAGGTGG+TGG + Chr2:72555022-72555041 MsG0280010629.01.T01:intron 30.0%
!! TGAACTTGTTCTTTTCACAA+AGG + Chr2:72555224-72555243 MsG0280010629.01.T01:CDS 30.0%
!! TTTTACTGAAAGAAGGTACA+AGG - Chr2:72553922-72553941 None:intergenic 30.0%
!!! AATACCTACTCTTTTGGAAT+TGG + Chr2:72554448-72554467 MsG0280010629.01.T01:CDS 30.0%
!!! ATCAGAGTTTTGATTTTGTG+GGG + Chr2:72553232-72553251 MsG0280010629.01.T01:intron 30.0%
!!! GTTTTGACTAATGACTTGTT+TGG - Chr2:72553424-72553443 None:intergenic 30.0%
!!! TCTTTTCAGGTAAGAAACAA+CGG - Chr2:72555472-72555491 None:intergenic 30.0%
AATACATGTCAGTATAGGTG+TGG - Chr2:72553978-72553997 None:intergenic 35.0%
AATTTGTGGAGAGAACTCAA+TGG + Chr2:72556572-72556591 MsG0280010629.01.T01:CDS 35.0%
ACACATTCATCGGTAGTAAT+AGG + Chr2:72554618-72554637 MsG0280010629.01.T01:intron 35.0%
ACTCTCTTGACATGACAAAA+TGG - Chr2:72552943-72552962 None:intergenic 35.0%
AGAAGATGCTAAAAGACACT+TGG - Chr2:72551752-72551771 None:intergenic 35.0%
AGCTCATATTTGTAGCTTCA+TGG - Chr2:72553348-72553367 None:intergenic 35.0%
AGCTTCATCTTGTATCCATA+AGG - Chr2:72553699-72553718 None:intergenic 35.0%
AGGATGATGATTGTAGAGTT+CGG + Chr2:72554638-72554657 MsG0280010629.01.T01:intron 35.0%
AGGTAATGATGTGAAGATCA+AGG - Chr2:72556726-72556745 None:intergenic 35.0%
AGTTTGTGGAATGTTGTAGT+TGG + Chr2:72551455-72551474 MsG0280010629.01.T01:intron 35.0%
ATAAATGTCACGCATTCACA+TGG - Chr2:72554749-72554768 None:intergenic 35.0%
ATATATAAGACTGCGGTCTT+TGG + Chr2:72556930-72556949 MsG0280010629.01.T01:three_prime_UTR 35.0%
CAATTTGAATGACATGGTTC+TGG - Chr2:72555129-72555148 None:intergenic 35.0%
CATTGATCTCATCTTCCAAA+TGG - Chr2:72552755-72552774 None:intergenic 35.0%
GATGAGATCAATGTTCAACT+TGG + Chr2:72552762-72552781 MsG0280010629.01.T01:CDS 35.0%
GGGTATGTTGAGTTTATATG+AGG + Chr2:72554223-72554242 MsG0280010629.01.T01:CDS 35.0%
GTCATTACACCAAAGAGAAT+TGG + Chr2:72554496-72554515 MsG0280010629.01.T01:CDS 35.0%
GTGTGAGTGCTACATTTAAT+TGG + Chr2:72552187-72552206 MsG0280010629.01.T01:intron 35.0%
GTTCTAATATGTAGAGGTCT+AGG - Chr2:72553121-72553140 None:intergenic 35.0%
TAGTAAAACAAAACCAAGCC+AGG - Chr2:72552268-72552287 None:intergenic 35.0%
TATGAGGTTTGTGATGTTCA+TGG - Chr2:72554949-72554968 None:intergenic 35.0%
TCACTTACCAATGACATTTG+GGG + Chr2:72554203-72554222 MsG0280010629.01.T01:CDS 35.0%
TGAGACAAAAAGATGTGTTG+TGG - Chr2:72551948-72551967 None:intergenic 35.0%
TGTCACTCTTTGGTATACTT+TGG - Chr2:72555532-72555551 None:intergenic 35.0%
TTCCACGTTGAAATTGCATT+GGG - Chr2:72553325-72553344 None:intergenic 35.0%
TTCCTTGTCGCTAAAATTAG+TGG - Chr2:72554880-72554899 None:intergenic 35.0%
TTTGCCAATTCCAAAAGAGT+AGG - Chr2:72554455-72554474 None:intergenic 35.0%
TTTGTCTATTCTCGATCCAA+TGG + Chr2:72554715-72554734 MsG0280010629.01.T01:intron 35.0%
! AAGATGATTGACTCAATCCA+AGG + Chr2:72552714-72552733 MsG0280010629.01.T01:CDS 35.0%
! AGATGATTGACTCAATCCAA+GGG + Chr2:72552715-72552734 MsG0280010629.01.T01:CDS 35.0%
! ATTCTCTTTGGTGTAATGAC+TGG - Chr2:72554496-72554515 None:intergenic 35.0%
! ATTTTCTCCACATGTGTTGT+AGG - Chr2:72552303-72552322 None:intergenic 35.0%
! TGAGTGTTTGGATCAACTTT+TGG + Chr2:72553283-72553302 MsG0280010629.01.T01:intron 35.0%
!! AACAGACGAAGGTATGTTTT+TGG - Chr2:72556609-72556628 None:intergenic 35.0%
!! ATTTTGATGGCTAAGTGCAA+GGG - Chr2:72553744-72553763 None:intergenic 35.0%
!! TTGGTGATTAATTTGTGCAG+TGG + Chr2:72555569-72555588 MsG0280010629.01.T01:intron 35.0%
!!! AGGATTTTTTTGGACAAGAG+TGG + Chr2:72554167-72554186 MsG0280010629.01.T01:intron 35.0%
!!! TATTTTGATGGCTAAGTGCA+AGG - Chr2:72553745-72553764 None:intergenic 35.0%
!!! TCAGAGTTTTGATTTTGTGG+GGG + Chr2:72553233-72553252 MsG0280010629.01.T01:intron 35.0%
!!! TTTGACTTGACCCAAACTTT+TGG - Chr2:72552643-72552662 None:intergenic 35.0%
AACTTGGGAGGATATGTGAT+TGG + Chr2:72552778-72552797 MsG0280010629.01.T01:CDS 40.0%
ACTTGGGAGGATATGTGATT+GGG + Chr2:72552779-72552798 MsG0280010629.01.T01:CDS 40.0%
AGATCAATGTTCAACTTGGG+AGG + Chr2:72552766-72552785 MsG0280010629.01.T01:CDS 40.0%
AGTGCTTCTTATGGACAGTA+GGG + Chr2:72555097-72555116 MsG0280010629.01.T01:CDS 40.0%
ATGCAATATACCAGGACATG+TGG - Chr2:72552868-72552887 None:intergenic 40.0%
ATGCGGCAATTTGAATGACA+TGG - Chr2:72555135-72555154 None:intergenic 40.0%
CAACATACCCCAAATGTCAT+TGG - Chr2:72554213-72554232 None:intergenic 40.0%
CACAAAGGCAATCAAAAGGT+TGG + Chr2:72555239-72555258 MsG0280010629.01.T01:intron 40.0%
CCTCAGTAACCGAAATTGAA+GGG - Chr2:72552832-72552851 None:intergenic 40.0%
CTCCACGTTCTAATATGTAG+AGG - Chr2:72553127-72553146 None:intergenic 40.0%
CTTCTAACCTTGCCATTCTT+AGG - Chr2:72554388-72554407 None:intergenic 40.0%
GAAGTTGTTCCATTGCATCA+AGG - Chr2:72555365-72555384 None:intergenic 40.0%
GACCTCTACATATTAGAACG+TGG + Chr2:72553122-72553141 MsG0280010629.01.T01:intron 40.0%
GAGAATTCCTACAACACATG+TGG + Chr2:72552293-72552312 MsG0280010629.01.T01:intron 40.0%
GAGAATTGGCAGAAATATGC+AGG + Chr2:72554510-72554529 MsG0280010629.01.T01:CDS 40.0%
GATGCTAAAAGACACTTGGT+AGG - Chr2:72551748-72551767 None:intergenic 40.0%
GATTTCTGCAGGATCATGTA+TGG + Chr2:72555681-72555700 MsG0280010629.01.T01:CDS 40.0%
GCCATTGTCATTGTATTTGC+AGG - Chr2:72551118-72551137 None:intergenic 40.0%
GCCTGCAAATACAATGACAA+TGG + Chr2:72551114-72551133 MsG0280010629.01.T01:exon 40.0%
GGATGACTTAGGAACTTCAA+CGG + Chr2:72555819-72555838 MsG0280010629.01.T01:CDS 40.0%
GGGATATGACTTCATCATCA+TGG - Chr2:72555761-72555780 None:intergenic 40.0%
GTTCCACGTTGAAATTGCAT+TGG - Chr2:72553326-72553345 None:intergenic 40.0%
TAAAACAAAACCAAGCCAGG+TGG - Chr2:72552265-72552284 None:intergenic 40.0%
TAAATGTAGCACTCACACCT+AGG - Chr2:72552185-72552204 None:intergenic 40.0%
TAACCGAAATTGAAGGGATG+TGG - Chr2:72552826-72552845 None:intergenic 40.0%
TACCTTCTCATTGAGAGCAA+TGG - Chr2:72551278-72551297 None:intergenic 40.0%
TGCAATATACCAGGACATGT+GGG - Chr2:72552867-72552886 None:intergenic 40.0%
TGGATACAAGATGAAGCTCT+AGG + Chr2:72553701-72553720 MsG0280010629.01.T01:intron 40.0%
TTGCCACATCCCTTCAATTT+CGG + Chr2:72552820-72552839 MsG0280010629.01.T01:CDS 40.0%
TTTCGGTTACTGAGGCATAA+TGG + Chr2:72552837-72552856 MsG0280010629.01.T01:intron 40.0%
! AGTAACTAATTTTGCGGCCT+AGG + Chr2:72552165-72552184 MsG0280010629.01.T01:intron 40.0%
! GAAGCTTTGATAACAGACGA+AGG - Chr2:72556620-72556639 None:intergenic 40.0%
! GGACAAGAGTGGCAATTTTA+GGG + Chr2:72554178-72554197 MsG0280010629.01.T01:CDS 40.0%
! TGATGATGAAGTCATATCCC+AGG + Chr2:72555761-72555780 MsG0280010629.01.T01:CDS 40.0%
! TGGACAAGAGTGGCAATTTT+AGG + Chr2:72554177-72554196 MsG0280010629.01.T01:CDS 40.0%
!! ATTAGGTGGTGGAAAGAGTT+GGG + Chr2:72555033-72555052 MsG0280010629.01.T01:intron 40.0%
!! CATTCTTAGGTGCTTTGGAA+GGG - Chr2:72554375-72554394 None:intergenic 40.0%
!! GATAATGGAGTGATTTCTGC+AGG + Chr2:72555670-72555689 MsG0280010629.01.T01:CDS 40.0%
!! TGCCACTAATTTTAGCGACA+AGG + Chr2:72554875-72554894 MsG0280010629.01.T01:intron 40.0%
!! TTGGGACTTGTTGACAAACT+TGG + Chr2:72555051-72555070 MsG0280010629.01.T01:CDS 40.0%
!!! CGAAGGTATGTTTTTGGTCA+TGG - Chr2:72556603-72556622 None:intergenic 40.0%
AAGTGCAAGGGTGGAAACAT+TGG - Chr2:72553732-72553751 None:intergenic 45.0%
ACGAGCCCTTGAAAATTCCA+TGG - Chr2:72554291-72554310 None:intergenic 45.0%
AGTGCAAGGGTGGAAACATT+GGG - Chr2:72553731-72553750 None:intergenic 45.0%
ATTGAAGGGATGTGGCAAAG+AGG - Chr2:72552818-72552837 None:intergenic 45.0%
CCATAGTCGAAGAATTTCCC+CGG - Chr2:72555800-72555819 None:intergenic 45.0%
CCCTTCAATTTCGGTTACTG+AGG + Chr2:72552829-72552848 MsG0280010629.01.T01:intron 45.0%
CGGGGAAATTCTTCGACTAT+GGG + Chr2:72555798-72555817 MsG0280010629.01.T01:CDS 45.0%
CTACTTCAGGACTAAGGTGT+GGG - Chr2:72554328-72554347 None:intergenic 45.0%
CTTCGACTATGGGATGACTT+AGG + Chr2:72555808-72555827 MsG0280010629.01.T01:CDS 45.0%
CTTGCCATTCTTAGGTGCTT+TGG - Chr2:72554380-72554399 None:intergenic 45.0%
GAGTGCTTCTTATGGACAGT+AGG + Chr2:72555096-72555115 MsG0280010629.01.T01:CDS 45.0%
GCCTCAGTAACCGAAATTGA+AGG - Chr2:72552833-72552852 None:intergenic 45.0%
GGATGCTACTAGGGAATTTG+TGG + Chr2:72556558-72556577 MsG0280010629.01.T01:CDS 45.0%
GTCCATTGCTCTCAATGAGA+AGG + Chr2:72551273-72551292 MsG0280010629.01.T01:CDS 45.0%
GTCCCAATGCAATTTCAACG+TGG + Chr2:72553320-72553339 MsG0280010629.01.T01:intron 45.0%
GTTCAGGAGGAACAAGAAAG+AGG + Chr2:72556458-72556477 MsG0280010629.01.T01:intron 45.0%
TAGAGTGAATTGCAACCACC+TGG + Chr2:72552247-72552266 MsG0280010629.01.T01:intron 45.0%
TCACATGGTCAAGAGACCAT+TGG - Chr2:72554734-72554753 None:intergenic 45.0%
TGGCAAAGAGGTCTTGAGAA+GGG - Chr2:72552806-72552825 None:intergenic 45.0%
TTGAGAGACCATCACCAATG+AGG - Chr2:72555726-72555745 None:intergenic 45.0%
TTGTGGGGGACAAAACCAAA+AGG + Chr2:72553247-72553266 MsG0280010629.01.T01:intron 45.0%
! ATTGACTCAATCCAAGGGCT+GGG + Chr2:72552720-72552739 MsG0280010629.01.T01:CDS 45.0%
! CAAAGCACCTAAGAATGGCA+AGG + Chr2:72554378-72554397 MsG0280010629.01.T01:CDS 45.0%
! CCATTCTTAGGTGCTTTGGA+AGG - Chr2:72554376-72554395 None:intergenic 45.0%
! CCTTCCAAAGCACCTAAGAA+TGG + Chr2:72554373-72554392 MsG0280010629.01.T01:CDS 45.0%
! CGGTTAGTCCATGTTCTTTC+TGG - Chr2:72555452-72555471 None:intergenic 45.0%
! GTCATGCTAACTTGTGCTCT+GGG + Chr2:72555884-72555903 MsG0280010629.01.T01:intron 45.0%
! TCATGCTAACTTGTGCTCTG+GGG + Chr2:72555885-72555904 MsG0280010629.01.T01:intron 45.0%
! TGGGCAGCAGCAACATTTTA+CGG + Chr2:72552381-72552400 MsG0280010629.01.T01:intron 45.0%
!! CATTGGTGATGGTCTCTCAA+AGG + Chr2:72555726-72555745 MsG0280010629.01.T01:CDS 45.0%
!! GATTAGGTGGTGGAAAGAGT+TGG + Chr2:72555032-72555051 MsG0280010629.01.T01:intron 45.0%
!! TAGGTGCTTTGGAAGGGTTA+AGG - Chr2:72554369-72554388 None:intergenic 45.0%
!! GAAAATTAATTAATAAATAA+AGG + Chr2:72555861-72555880 MsG0280010629.01.T01:intron 5.0%
!!! AATTTAAATATTTTTATTAG+TGG + Chr2:72556071-72556090 MsG0280010629.01.T01:intron 5.0%
!!! ATTTCATATATTTAATTTAA+CGG - Chr2:72553086-72553105 None:intergenic 5.0%
ACCATCACCAATGAGGAAGG+TGG - Chr2:72555719-72555738 None:intergenic 50.0%
ACCTTAGTCCTGAAGTAGGC+AGG + Chr2:72554330-72554349 MsG0280010629.01.T01:CDS 50.0%
ATGCATGCCACCTTCCTCAT+TGG + Chr2:72555709-72555728 MsG0280010629.01.T01:CDS 50.0%
CAGATGGGACCTTGATGCAA+TGG + Chr2:72555353-72555372 MsG0280010629.01.T01:intron 50.0%
CCAATTTGCCTGCCTACTTC+AGG - Chr2:72554341-72554360 None:intergenic 50.0%
CCACACCTTAGTCCTGAAGT+AGG + Chr2:72554326-72554345 MsG0280010629.01.T01:CDS 50.0%
CCGGGGAAATTCTTCGACTA+TGG + Chr2:72555797-72555816 MsG0280010629.01.T01:CDS 50.0%
CCTACTTCAGGACTAAGGTG+TGG - Chr2:72554329-72554348 None:intergenic 50.0%
CCTGAAGTAGGCAGGCAAAT+TGG + Chr2:72554338-72554357 MsG0280010629.01.T01:CDS 50.0%
GAGACCATCACCAATGAGGA+AGG - Chr2:72555722-72555741 None:intergenic 50.0%
GGTTACTGAGGCATAATGGC+TGG + Chr2:72552841-72552860 MsG0280010629.01.T01:intron 50.0%
GTGCAAGGGTGGAAACATTG+GGG - Chr2:72553730-72553749 None:intergenic 50.0%
GTGGCAAAGAGGTCTTGAGA+AGG - Chr2:72552807-72552826 None:intergenic 50.0%
TGAATTGCAACCACCTGGCT+TGG + Chr2:72552252-72552271 MsG0280010629.01.T01:intron 50.0%
TTGACTCAATCCAAGGGCTG+GGG + Chr2:72552721-72552740 MsG0280010629.01.T01:CDS 50.0%
! GACCAACGGAGTGCTTCTTA+TGG + Chr2:72555088-72555107 MsG0280010629.01.T01:CDS 50.0%
! GATTGACTCAATCCAAGGGC+TGG + Chr2:72552719-72552738 MsG0280010629.01.T01:CDS 50.0%
! GGTCATGCTAACTTGTGCTC+TGG + Chr2:72555883-72555902 MsG0280010629.01.T01:intron 50.0%
! TTGATGGCTAAGTGCAAGGG+TGG - Chr2:72553741-72553760 None:intergenic 50.0%
!! GTCCATAAGAAGCACTCCGT+TGG - Chr2:72555093-72555112 None:intergenic 50.0%
GCCACCTTCCTCATTGGTGA+TGG + Chr2:72555715-72555734 MsG0280010629.01.T01:CDS 55.0%
GCCTGCCTACTTCAGGACTA+AGG - Chr2:72554334-72554353 None:intergenic 55.0%
TCAATCCAAGGGCTGGGGAT+TGG + Chr2:72552726-72552745 MsG0280010629.01.T01:CDS 55.0%
!! GCTGGGGATTGGTCACCATT+TGG + Chr2:72552737-72552756 MsG0280010629.01.T01:CDS 55.0%
CAGGCTCTTCACTTGCTCCG+GGG + Chr2:72555780-72555799 MsG0280010629.01.T01:CDS 60.0%
CCAGGCTCTTCACTTGCTCC+GGG + Chr2:72555779-72555798 MsG0280010629.01.T01:CDS 60.0%
CCCAGGCTCTTCACTTGCTC+CGG + Chr2:72555778-72555797 MsG0280010629.01.T01:CDS 60.0%
CCGGAGCAAGTGAAGAGCCT+GGG - Chr2:72555781-72555800 None:intergenic 60.0%
! AATGGCTGGCCCACATGTCC+TGG + Chr2:72552855-72552874 MsG0280010629.01.T01:intron 60.0%
CCCGGAGCAAGTGAAGAGCC+TGG - Chr2:72555782-72555801 None:intergenic 65.0%
GGTGACCAATCCCCAGCCCT+TGG - Chr2:72552734-72552753 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 72551083 72556979 72551083 ID=MsG0280010629.01;Name=MsG0280010629.01
Chr2 mRNA 72551083 72556979 72551083 ID=MsG0280010629.01.T01;Parent=MsG0280010629.01;Name=MsG0280010629.01.T01;_AED=0.47;_eAED=0.47;_QI=44|0.83|0.71|1|1|1|7|222|554
Chr2 exon 72551083 72551294 72551083 ID=MsG0280010629.01.T01:exon:15301;Parent=MsG0280010629.01.T01
Chr2 exon 72552612 72552841 72552612 ID=MsG0280010629.01.T01:exon:15302;Parent=MsG0280010629.01.T01
Chr2 exon 72554169 72554531 72554169 ID=MsG0280010629.01.T01:exon:15303;Parent=MsG0280010629.01.T01
Chr2 exon 72555038 72555256 72555038 ID=MsG0280010629.01.T01:exon:15304;Parent=MsG0280010629.01.T01
Chr2 exon 72555356 72555494 72555356 ID=MsG0280010629.01.T01:exon:15305;Parent=MsG0280010629.01.T01
Chr2 exon 72555589 72555840 72555589 ID=MsG0280010629.01.T01:exon:15306;Parent=MsG0280010629.01.T01
Chr2 exon 72556464 72556979 72556464 ID=MsG0280010629.01.T01:exon:15307;Parent=MsG0280010629.01.T01
Chr2 five_prime_UTR 72551083 72551126 72551083 ID=MsG0280010629.01.T01:five_prime_utr;Parent=MsG0280010629.01.T01
Chr2 CDS 72551127 72551294 72551127 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 CDS 72552612 72552841 72552612 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 CDS 72554169 72554531 72554169 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 CDS 72555038 72555256 72555038 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 CDS 72555356 72555494 72555356 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 CDS 72555589 72555840 72555589 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 CDS 72556464 72556757 72556464 ID=MsG0280010629.01.T01:cds;Parent=MsG0280010629.01.T01
Chr2 three_prime_UTR 72556758 72556979 72556758 ID=MsG0280010629.01.T01:three_prime_utr;Parent=MsG0280010629.01.T01
Gene Sequence

>MsG0280010629.01.T01

ATGACAATGGCTGTTTCTGAACTAAGAGTTTCATATCTAACAAGCACATTTGCTCGTTGTAATTTTGGGACTTCTACATATCAATCACGCATCTTATCGCTACAAAAATCAAATTCAAGGATTATGCATGGTAAATTTTCGATCAAGTCCATTGCTCTCAATGAGAAGTTGTCACCTTTACAAACTGAAGATAAGACCAAAAGTTTGGGTCAAGTCAAAAGAAGAAGCCGAGAAGCATTGCTAAATTCAAATGATCCTATTGTAACATTGAAGATGATTGACTCAATCCAAGGGCTGGGGATTGGTCACCATTTGGAAGATGAGATCAATGTTCAACTTGGGAGGATATGTGATTGGGACCCTTCTCAAGACCTCTTTGCCACATCCCTTCAATTTCGGATTTTTTTGGACAAGAGTGGCAATTTTAGGGAATCACTTACCAATGACATTTGGGGTATGTTGAGTTTATATGAGGCATCATATTTAGGGACAGAAGATGAAGAAATATTAAAAAAAGCCATGGAATTTTCAAGGGCTCGTCTAAGTGAATTAATCCCACACCTTAGTCCTGAAGTAGGCAGGCAAATTGGAAGAGCCTTAACCCTTCCAAAGCACCTAAGAATGGCAAGGTTAGAAGCTAGAAACTACATTGAAGAATATAGTCAAGAAAGTAACCAAATACCTACTCTTTTGGAATTGGCAAAGTTAGACTCTGAGATGATCCAGTCATTACACCAAAGAGAATTGGCAGAAATATGCAGGTGGTGGAAAGAGTTGGGACTTGTTGACAAACTTGGTTTTGCAAGAGATAGACCAACGGAGTGCTTCTTATGGACAGTAGGGATATTTCCAGAACCATGTCATTCAAATTGCCGCATTGAACTTACAAAAACCATATGTATTTTGCTAGTTATGGATGATATCTTTGACACTTATGGCACATTAGATGAACTTGTTCTTTTCACAAAGGCAATCAAAAGATGGGACCTTGATGCAATGGAACAACTTCCTGAATACATGAAAATATGTTATATGGCATTATATAACACCACAAATGAAATTGCATATAGAATCCAGAAAGAACATGGACTAACCGTTGTTTCTTACCTGAAAAGAACATGGATTGACATATTTGAAGCATTTCTTGAAGAAGCTAAATGGTTCAATAATGGAAGTGTGCCAAATTTTAAGACATATTTGGATAATGGAGTGATTTCTGCAGGATCATGTATGGCATTGATGCATGCCACCTTCCTCATTGGTGATGGTCTCTCAAAGGAAACTATTTCCATGATGATGAAGTCATATCCCAGGCTCTTCACTTGCTCCGGGGAAATTCTTCGACTATGGGATGACTTAGGAACTTCAACGGAGGAACAAGAAAGAGGAGATAATGCTAGCAGTATACAATGCATGATGAGAGAGAATAATATTTCAGATGAAAATGAAGGAAGAATACAAATAAGGATGCTACTAGGGAATTTGTGGAGAGAACTCAATGGTCTTGCCATGACCAAAAACATACCTTCGTCTGTTATCAAAGCTTCTCTTAACATGGCTAGAACTGCTCAAGTTATTTATCAACATGGAGATGATCAAAGCACATTTACTGTTGATGACTATGTGCAAACCTTGATCTTCACATCATTACCTACTAAAAATTGA
Protein sequence

>MsG0280010629.01.T01

MTMAVSELRVSYLTSTFARCNFGTSTYQSRILSLQKSNSRIMHGKFSIKSIALNEKLSPLQTEDKTKSLGQVKRRSREALLNSNDPIVTLKMIDSIQGLGIGHHLEDEINVQLGRICDWDPSQDLFATSLQFRIFLDKSGNFRESLTNDIWGMLSLYEASYLGTEDEEILKKAMEFSRARLSELIPHLSPEVGRQIGRALTLPKHLRMARLEARNYIEEYSQESNQIPTLLELAKLDSEMIQSLHQRELAEICRWWKELGLVDKLGFARDRPTECFLWTVGIFPEPCHSNCRIELTKTICILLVMDDIFDTYGTLDELVLFTKAIKRWDLDAMEQLPEYMKICYMALYNTTNEIAYRIQKEHGLTVVSYLKRTWIDIFEAFLEEAKWFNNGSVPNFKTYLDNGVISAGSCMALMHATFLIGDGLSKETISMMMKSYPRLFTCSGEILRLWDDLGTSTEEQERGDNASSIQCMMRENNISDENEGRIQIRMLLGNLWRELNGLAMTKNIPSSVIKASLNMARTAQVIYQHGDDQSTFTVDDYVQTLIFTSLPTKN*