AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022310.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022310.01.T01 MTR_4g088190 98.901 364 3 1 1 363 1 364 0.0 733
MsG0480022310.01.T01 MTR_4g088200 89.256 363 37 1 1 363 1 361 0.0 666
MsG0480022310.01.T01 MTR_4g033015 75.549 364 87 2 1 363 1 363 0.0 546
MsG0480022310.01.T01 MTR_4g033200 75.275 364 88 2 1 363 1 363 0.0 544
MsG0480022310.01.T01 MTR_4g033150 74.725 364 90 2 1 363 1 363 0.0 542
MsG0480022310.01.T01 MTR_4g033170 74.931 363 85 1 1 363 1 357 0.0 525
MsG0480022310.01.T01 MTR_4g033085 75.482 363 83 1 1 363 1 357 0.0 512
MsG0480022310.01.T01 MTR_0794s0020 73.200 250 65 2 1 249 1 249 1.93e-133 381
MsG0480022310.01.T01 MTR_7g014510 49.862 363 176 4 1 363 1 357 2.83e-122 357
MsG0480022310.01.T01 MTR_7g014570 49.862 363 171 5 1 363 1 352 4.59e-122 356
MsG0480022310.01.T01 MTR_5g074600 49.859 355 170 5 11 363 11 359 4.04e-121 354
MsG0480022310.01.T01 MTR_4g088345 52.473 364 164 5 1 363 1 356 8.90e-120 350
MsG0480022310.01.T01 MTR_7g024500 48.876 356 170 5 6 361 5 348 7.15e-118 345
MsG0480022310.01.T01 MTR_5g074680 48.023 354 176 5 11 362 12 359 2.47e-117 344
MsG0480022310.01.T01 MTR_1g076940 49.180 366 178 6 1 363 1 361 1.83e-116 342
MsG0480022310.01.T01 MTR_7g024520 50.000 356 166 5 6 361 5 348 1.26e-115 340
MsG0480022310.01.T01 MTR_5g074580 48.732 355 174 5 11 363 12 360 1.82e-115 340
MsG0480022310.01.T01 MTR_4g079160 46.610 354 180 3 11 363 10 355 6.00e-108 320
MsG0480022310.01.T01 MTR_4g088340 51.320 341 157 5 24 363 1 333 9.34e-108 319
MsG0480022310.01.T01 MTR_5g074610 45.892 353 158 3 11 363 7 326 1.70e-106 315
MsG0480022310.01.T01 MTR_5g074540 45.352 355 168 5 11 363 11 341 1.39e-105 314
MsG0480022310.01.T01 MTR_4g038440 34.332 367 225 9 2 363 13 368 6.48e-62 202
MsG0480022310.01.T01 MTR_3g083620 36.152 343 204 9 20 359 27 357 1.07e-60 199
MsG0480022310.01.T01 MTR_0017s0100 34.153 366 227 8 2 363 13 368 4.84e-60 198
MsG0480022310.01.T01 MTR_0079s0070 34.503 342 208 9 27 363 4 334 1.04e-57 191
MsG0480022310.01.T01 MTR_1g076930 41.975 243 132 5 24 263 1 237 1.61e-55 182
MsG0480022310.01.T01 MTR_1g036460 31.778 343 210 10 33 362 38 369 8.90e-44 155
MsG0480022310.01.T01 MTR_1g036490 32.153 339 214 8 33 362 38 369 1.37e-43 155
MsG0480022310.01.T01 MTR_5g098170 34.139 331 200 10 28 350 30 350 2.80e-43 154
MsG0480022310.01.T01 MTR_7g012090 31.343 335 213 8 26 350 34 361 1.65e-41 149
MsG0480022310.01.T01 MTR_3g092900 32.486 354 205 11 9 349 17 349 2.58e-41 149
MsG0480022310.01.T01 MTR_1g096310 31.233 365 226 10 4 358 16 365 2.83e-40 146
MsG0480022310.01.T01 MTR_8g068750 31.714 350 215 10 9 348 27 362 3.74e-40 146
MsG0480022310.01.T01 MTR_7g012070 30.149 335 217 8 26 350 34 361 8.00e-40 145
MsG0480022310.01.T01 MTR_7g012040 30.699 329 217 7 26 350 33 354 1.24e-39 144
MsG0480022310.01.T01 MTR_7g118320 33.033 333 202 13 26 348 26 347 1.27e-39 144
MsG0480022310.01.T01 MTR_2g072790 33.141 347 204 11 26 360 21 351 2.62e-39 143
MsG0480022310.01.T01 MTR_7g011990 28.736 348 222 9 26 362 34 366 4.27e-39 143
MsG0480022310.01.T01 MTR_8g068690 32.822 326 204 9 26 344 40 357 5.74e-39 142
MsG0480022310.01.T01 MTR_7g011900 30.909 330 216 7 26 350 34 356 7.55e-39 142
MsG0480022310.01.T01 MTR_0591s0010 31.790 324 206 9 28 344 43 358 1.77e-38 141
MsG0480022310.01.T01 MTR_8g068870 30.423 355 229 10 4 348 2 348 1.03e-37 139
MsG0480022310.01.T01 MTR_7g118300 30.792 341 211 10 26 355 42 368 1.67e-36 136
MsG0480022310.01.T01 MTR_2g055940 31.269 323 207 10 32 348 34 347 1.68e-36 135
MsG0480022310.01.T01 MTR_7g012020 29.394 330 221 7 26 350 33 355 8.78e-35 131
MsG0480022310.01.T01 MTR_8g024160 40.541 185 105 3 173 355 140 321 1.32e-34 130
MsG0480022310.01.T01 MTR_4g038440 32.707 266 167 6 2 263 13 270 1.42e-34 128
MsG0480022310.01.T01 MTR_1g036510 30.476 315 200 9 56 362 80 383 2.40e-34 130
MsG0480022310.01.T01 MTR_3g021430 30.899 356 217 11 13 358 14 350 6.00e-34 129
MsG0480022310.01.T01 MTR_3g021440 31.548 336 198 14 32 353 42 359 2.55e-33 127
MsG0480022310.01.T01 MTR_3g096050 29.204 339 220 11 32 362 31 357 5.30e-32 124
MsG0480022310.01.T01 MTR_8g068570 28.981 314 177 8 27 331 42 318 2.92e-30 118
MsG0480022310.01.T01 MTR_6g078850 28.161 348 230 9 9 348 33 368 1.73e-29 119
MsG0480022310.01.T01 MTR_8g068730 28.571 350 194 10 9 348 27 330 1.18e-28 114
MsG0480022310.01.T01 MTR_3g096070 26.786 336 205 10 32 360 31 332 3.45e-25 104
MsG0480022310.01.T01 MTR_7g012020 29.555 247 165 6 26 267 33 275 8.25e-23 97.4
MsG0480022310.01.T01 MTR_1g050220 33.766 154 89 2 194 347 147 287 1.05e-20 91.7
MsG0480022310.01.T01 MTR_8g068690 28.745 247 165 7 26 266 40 281 6.93e-19 86.3
MsG0480022310.01.T01 MTR_8g068740 27.437 277 152 7 26 293 41 277 2.76e-17 81.3
MsG0480022310.01.T01 MTR_3g096050 29.876 241 154 9 32 266 31 262 6.63e-17 80.1
MsG0480022310.01.T01 MTR_1g036510 29.907 214 136 7 56 263 80 285 8.99e-16 77.4
MsG0480022310.01.T01 MTR_8g068600 26.556 241 150 9 38 264 27 254 7.83e-15 74.3
MsG0480022310.01.T01 MTR_7g012020 29.630 216 143 6 26 236 33 244 1.02e-14 73.6
MsG0480022310.01.T01 MTR_4g025570 45.783 83 38 3 6 88 16 91 1.64e-14 72.4
MsG0480022310.01.T01 MTR_4g025570 38.542 96 55 3 265 359 122 214 1.50e-12 66.6
MsG0480022310.01.T01 MTR_8g068620 36.170 94 60 0 173 266 20 113 2.01e-13 66.6
MsG0480022310.01.T01 MTR_8g068760 42.529 87 46 2 263 348 135 218 9.32e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022310.01.T01 AT4G35150 33.520 358 178 11 16 362 15 323 1.31e-50 172
MsG0480022310.01.T01 AT4G35160 34.435 363 211 11 16 362 29 380 6.26e-47 164
MsG0480022310.01.T01 AT5G54160 34.006 347 198 9 28 361 31 359 6.51e-45 158
MsG0480022310.01.T01 AT3G53140 32.286 350 208 13 26 360 21 356 8.14e-40 144
MsG0480022310.01.T01 AT1G77520 31.551 374 223 13 9 362 20 380 5.50e-39 143
MsG0480022310.01.T01 AT1G51990 31.267 371 230 13 4 363 6 362 1.74e-38 141
MsG0480022310.01.T01 AT1G51990 30.343 379 223 12 4 363 6 362 2.08e-38 141
MsG0480022310.01.T01 AT5G53810 31.624 351 212 12 29 362 38 377 2.98e-34 130
MsG0480022310.01.T01 AT1G77530 33.333 369 223 13 9 362 20 380 4.02e-34 130
MsG0480022310.01.T01 AT1G33030 30.702 342 220 10 28 362 18 349 6.15e-34 129
MsG0480022310.01.T01 AT1G63140 29.301 372 235 12 9 362 19 380 2.30e-32 125
MsG0480022310.01.T01 AT1G63140 29.301 372 235 12 9 362 39 400 2.36e-32 125
MsG0480022310.01.T01 AT1G62900 35.681 213 118 6 153 362 8 204 2.39e-25 102
MsG0480022310.01.T01 AT1G76790 27.933 358 218 12 7 344 9 346 3.95e-25 105
MsG0480022310.01.T01 AT5G37170 30.928 194 128 4 172 362 43 233 2.58e-23 97.4
MsG0480022310.01.T01 AT5G37170 30.928 194 128 4 172 362 143 333 6.35e-23 98.2
MsG0480022310.01.T01 AT5G37170 31.667 180 114 5 187 360 7 183 3.88e-22 92.8
MsG0480022310.01.T01 AT1G21130 27.089 347 200 15 31 350 40 360 3.03e-21 94.4
MsG0480022310.01.T01 AT1G21110 26.023 342 200 14 31 345 40 355 2.53e-20 91.7
MsG0480022310.01.T01 AT1G21100 26.163 344 207 13 31 350 40 360 2.68e-20 91.7
MsG0480022310.01.T01 AT1G21120 25.581 344 209 12 31 350 40 360 6.61e-20 90.5
MsG0480022310.01.T01 AT1G21120 25.581 344 209 12 31 350 88 408 8.49e-20 90.5
MsG0480022310.01.T01 AT1G63140 27.306 271 174 9 9 263 39 302 9.11e-15 74.7
MsG0480022310.01.T01 AT1G33030 28.099 242 161 8 28 263 18 252 6.83e-13 68.6
MsG0480022310.01.T01 AT1G33030 28.033 239 159 8 31 263 21 252 1.14e-12 68.2

Find 74 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTCTCTTGTTTGTTT+TGG 0.089848 4:-70997169 None:intergenic
GTGCAACAGGGGAGAGCTTC+TGG 0.191292 4:+70997646 MsG0480022310.01.T01:CDS
GCTGTTCTTCAATATCTTTA+AGG 0.195840 4:-70998324 None:intergenic
TTTGAAACTTCATCCTTCTA+AGG 0.260291 4:+70997371 MsG0480022310.01.T01:CDS
CGAACACGTGTTTGTTCTCT+TGG 0.272286 4:-70997758 None:intergenic
TGTTTATCTTCAATTGTTAA+AGG 0.290462 4:+70997540 MsG0480022310.01.T01:CDS
CAGGTTGTTGGTAACTTAAC+TGG 0.291153 4:+70997885 MsG0480022310.01.T01:CDS
TACAGTGGGTTCTGCATGAT+TGG 0.326455 4:+70998288 MsG0480022310.01.T01:intron
ATGCAGCAACTTCAGAATTA+AGG 0.330463 4:-70998590 None:intergenic
AGAAACCGTTGTGTGTTAAA+AGG 0.336053 4:-70997419 None:intergenic
TGTATACATGTTTGTACAAA+TGG 0.340652 4:-70997245 None:intergenic
CAAACACGTGTTCGAGGGTT+TGG 0.341667 4:+70997767 MsG0480022310.01.T01:CDS
ACACTGTTTGAGTGTGCAAC+AGG 0.344866 4:+70997633 MsG0480022310.01.T01:CDS
GTGATGCTTACAATGTTTCT+TGG 0.364082 4:+70998461 MsG0480022310.01.T01:CDS
TTCATTGAACCATTTCTTTG+AGG 0.375008 4:-70997598 None:intergenic
TGGATTAACTGAACTGCAAT+TGG 0.377228 4:+70998427 MsG0480022310.01.T01:CDS
AATGAAAATTTGAACTTTGT+TGG 0.379769 4:+70997909 MsG0480022310.01.T01:CDS
GCTAATTCAGAAAGAGTCAT+TGG 0.394069 4:-70997342 None:intergenic
CCACTTATGAGAAGCTTTGA+AGG 0.396791 4:-70997507 None:intergenic
GTTGATGTTGGAGGTGGTAC+TGG 0.401447 4:+70997798 MsG0480022310.01.T01:CDS
TTGGAGTCTCTTGTTGATGT+TGG 0.404723 4:+70997786 MsG0480022310.01.T01:CDS
CTCCACATGTCTAAAGAACT+TGG 0.410016 4:-70997573 None:intergenic
TGAAGTATATTAACCTTAGA+AGG 0.411294 4:-70997384 None:intergenic
AAGAAAGAACAAAGCAAGAA+TGG 0.426132 4:+70998486 MsG0480022310.01.T01:CDS
ACTGCAATTGGACTATGATT+TGG 0.427028 4:+70998439 MsG0480022310.01.T01:CDS
GAGAGACTTGAAGCCAGAAA+TGG 0.427559 4:-70998555 None:intergenic
AAAACACCTACTTCTGTAGT+AGG 0.433970 4:-70998662 None:intergenic
CCTTCAAAGCTTCTCATAAG+TGG 0.434600 4:+70997507 MsG0480022310.01.T01:CDS
AGAGACTTGAAGCCAGAAAT+GGG 0.439445 4:-70998554 None:intergenic
AACAAACAAGAGAATAGAAA+TGG 0.441342 4:+70997173 MsG0480022310.01.T01:exon
TTTCATTACTCAAAGTAAAG+AGG 0.458846 4:+70998688 MsG0480022310.01.T01:three_prime_UTR
TGTGGAGTTCCTCAAAGAAA+TGG 0.466565 4:+70997589 MsG0480022310.01.T01:CDS
TGCAACAGGGGAGAGCTTCT+GGG 0.468202 4:+70997647 MsG0480022310.01.T01:CDS
GTGTTAAAAGGCGCAAGAAT+CGG 0.481292 4:-70997407 None:intergenic
GAAAATTTGAACTTTGTTGG+TGG 0.485249 4:+70997912 MsG0480022310.01.T01:CDS
TTCACTTTCTTCAGAACCAT+TGG 0.487182 4:-70997205 None:intergenic
TTTGATCAACCACAGGTTGT+TGG 0.492105 4:+70997873 MsG0480022310.01.T01:CDS
CTCAAATCAGCCATGGAACT+AGG 0.496080 4:+70997288 MsG0480022310.01.T01:CDS
GAGTCTCTTGTTGATGTTGG+AGG 0.496314 4:+70997789 MsG0480022310.01.T01:CDS
ATCCAAGTTCTTTAGACATG+TGG 0.496638 4:+70997571 MsG0480022310.01.T01:CDS
GAGTATGTTTCAAGATGCTA+TGG 0.498973 4:+70997704 MsG0480022310.01.T01:CDS
ATGTGATTGATGTGTTATGA+TGG 0.500744 4:-70997131 None:intergenic
ACAATAGTGAAAGGCAAAGA+AGG 0.501253 4:+70997450 MsG0480022310.01.T01:CDS
ATCAGCTATGCCTAGTTCCA+TGG 0.501316 4:-70997298 None:intergenic
GAAATGGTTCAATGAAGATA+AGG 0.502299 4:+70997605 MsG0480022310.01.T01:CDS
AGAAAGAACAAAGCAAGAAT+GGG 0.507206 4:+70998487 MsG0480022310.01.T01:CDS
ACAATTGAAGATAAACATGT+TGG 0.521606 4:-70997534 None:intergenic
ATACAACTTTGTTAGTTCCA+TGG 0.535416 4:+70997263 MsG0480022310.01.T01:CDS
TTGATGTGTTATGATGGAAA+TGG 0.537685 4:-70997125 None:intergenic
GAAATGGCTTTCACTACCAA+TGG 0.538698 4:+70997189 MsG0480022310.01.T01:exon
AGAGAACAAACACGTGTTCG+AGG 0.543577 4:+70997761 MsG0480022310.01.T01:CDS
ATTTCACACAAAGGAAAGGA+TGG 0.547784 4:+70998356 MsG0480022310.01.T01:CDS
AGTAAAACAGCATCAGCAGA+AGG 0.551999 4:-70997954 None:intergenic
TTGTTCCCTACTACAGAAGT+AGG 0.553601 4:+70998656 MsG0480022310.01.T01:three_prime_UTR
TCTCTTGTTGATGTTGGAGG+TGG 0.554073 4:+70997792 MsG0480022310.01.T01:CDS
TCTTTACTTTGAGTAATGAA+AGG 0.557291 4:-70998686 None:intergenic
AGGATGAAGTTTCAAAGAAG+AGG 0.557817 4:-70997364 None:intergenic
CATGGCTGATTTGAGTGCCA+TGG 0.563511 4:-70997280 None:intergenic
AGCAATTTCACACAAAGGAA+AGG 0.577136 4:+70998352 MsG0480022310.01.T01:CDS
GAGAACAAACACGTGTTCGA+GGG 0.583061 4:+70997762 MsG0480022310.01.T01:CDS
CACTGTTTGAGTGTGCAACA+GGG 0.603315 4:+70997634 MsG0480022310.01.T01:CDS
CATGGCACTCAAATCAGCCA+TGG 0.607444 4:+70997281 MsG0480022310.01.T01:CDS
AAACACCTACTTCTGTAGTA+GGG 0.609465 4:-70998661 None:intergenic
GATGTTGGAGGTGGTACTGG+TGG 0.610342 4:+70997801 MsG0480022310.01.T01:CDS
GCTGATGCAATCCATAACCA+TGG 0.611918 4:+70997315 MsG0480022310.01.T01:CDS
AAAACAGTGCATTTAAGGTG+AGG 0.613644 4:-70997852 None:intergenic
GTAAAACAGCATCAGCAGAA+GGG 0.623492 4:-70997953 None:intergenic
AAAGAAGCAATTTCACACAA+AGG 0.626707 4:+70998347 MsG0480022310.01.T01:CDS
GAGACTTGAAGCCAGAAATG+GGG 0.636393 4:-70998553 None:intergenic
AGACTTGAAGCCAGAAATGG+GGG 0.646680 4:-70998552 None:intergenic
ACTGTTTGAGTGTGCAACAG+GGG 0.649035 4:+70997635 MsG0480022310.01.T01:CDS
GATGAAACAAGTGACGATCG+TGG 0.671140 4:+70998407 MsG0480022310.01.T01:CDS
CTTATGAGAAGCTTTGAAGG+AGG 0.681784 4:-70997504 None:intergenic
GTTAAGTTACCAACAACCTG+TGG 0.693381 4:-70997882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATAACTTTTACTAATA+AGG + Chr4:70998181-70998200 MsG0480022310.01.T01:intron 10.0%
!!! AATTGTTACTATTTCAATTT+TGG + Chr4:70997996-70998015 MsG0480022310.01.T01:intron 15.0%
!!! TGACATTTAATTTAGTTATT+TGG - Chr4:70998256-70998275 None:intergenic 15.0%
!!! TTTTACTAATAAGGATAAAA+TGG + Chr4:70998190-70998209 MsG0480022310.01.T01:intron 15.0%
!! AAGTTATATAACAAGATTGA+AGG - Chr4:70998172-70998191 None:intergenic 20.0%
!! AATGAAAATTTGAACTTTGT+TGG + Chr4:70997909-70997928 MsG0480022310.01.T01:CDS 20.0%
!! TGTTTATCTTCAATTGTTAA+AGG + Chr4:70997540-70997559 MsG0480022310.01.T01:CDS 20.0%
!!! ACAAATTAAGATGCATATTT+TGG + Chr4:70998225-70998244 MsG0480022310.01.T01:intron 20.0%
! AACAAACAAGAGAATAGAAA+TGG + Chr4:70997173-70997192 MsG0480022310.01.T01:exon 25.0%
! ACAATTGAAGATAAACATGT+TGG - Chr4:70997537-70997556 None:intergenic 25.0%
! TCTTTACTTTGAGTAATGAA+AGG - Chr4:70998689-70998708 None:intergenic 25.0%
! TGAAGTATATTAACCTTAGA+AGG - Chr4:70997387-70997406 None:intergenic 25.0%
! TGTATACATGTTTGTACAAA+TGG - Chr4:70997248-70997267 None:intergenic 25.0%
! TGTTAGACATTAAAATGTGT+AGG + Chr4:70998138-70998157 MsG0480022310.01.T01:intron 25.0%
! TTTCATTACTCAAAGTAAAG+AGG + Chr4:70998688-70998707 MsG0480022310.01.T01:three_prime_UTR 25.0%
! TTTGCAAAAACAATAGTGAA+AGG + Chr4:70997441-70997460 MsG0480022310.01.T01:CDS 25.0%
!! CAATTGTCTTTTATTACAGT+GGG + Chr4:70998274-70998293 MsG0480022310.01.T01:intron 25.0%
!! TCAATTGTCTTTTATTACAG+TGG + Chr4:70998273-70998292 MsG0480022310.01.T01:intron 25.0%
!! TCGTTGACTAAATTTAATTC+TGG - Chr4:70998078-70998097 None:intergenic 25.0%
!!! TCTATTCTCTTGTTTGTTTT+GGG - Chr4:70997171-70997190 None:intergenic 25.0%
!!! TTCTATTCTCTTGTTTGTTT+TGG - Chr4:70997172-70997191 None:intergenic 25.0%
AAAGAAGCAATTTCACACAA+AGG + Chr4:70998347-70998366 MsG0480022310.01.T01:CDS 30.0%
AAGAAAGAACAAAGCAAGAA+TGG + Chr4:70998486-70998505 MsG0480022310.01.T01:CDS 30.0%
AGAAAGAACAAAGCAAGAAT+GGG + Chr4:70998487-70998506 MsG0480022310.01.T01:CDS 30.0%
ATACAACTTTGTTAGTTCCA+TGG + Chr4:70997263-70997282 MsG0480022310.01.T01:CDS 30.0%
ATGTGATTGATGTGTTATGA+TGG - Chr4:70997134-70997153 None:intergenic 30.0%
GAAAATTTGAACTTTGTTGG+TGG + Chr4:70997912-70997931 MsG0480022310.01.T01:CDS 30.0%
GAAATGGTTCAATGAAGATA+AGG + Chr4:70997605-70997624 MsG0480022310.01.T01:CDS 30.0%
GATCAAAAACAGTGCATTTA+AGG - Chr4:70997860-70997879 None:intergenic 30.0%
GCTGTTCTTCAATATCTTTA+AGG - Chr4:70998327-70998346 None:intergenic 30.0%
TTCATTGAACCATTTCTTTG+AGG - Chr4:70997601-70997620 None:intergenic 30.0%
! TTGATGTGTTATGATGGAAA+TGG - Chr4:70997128-70997147 None:intergenic 30.0%
! TTTGAAACTTCATCCTTCTA+AGG + Chr4:70997371-70997390 MsG0480022310.01.T01:CDS 30.0%
!!! CTATTCTCTTGTTTGTTTTG+GGG - Chr4:70997170-70997189 None:intergenic 30.0%
!!! TATTCTCTTGTTTGTTTTGG+GGG - Chr4:70997169-70997188 None:intergenic 30.0%
AAAACACCTACTTCTGTAGT+AGG - Chr4:70998665-70998684 None:intergenic 35.0%
AAACACCTACTTCTGTAGTA+GGG - Chr4:70998664-70998683 None:intergenic 35.0%
ACAATAGTGAAAGGCAAAGA+AGG + Chr4:70997450-70997469 MsG0480022310.01.T01:CDS 35.0%
ACTGCAATTGGACTATGATT+TGG + Chr4:70998439-70998458 MsG0480022310.01.T01:CDS 35.0%
AGAAACCGTTGTGTGTTAAA+AGG - Chr4:70997422-70997441 None:intergenic 35.0%
AGCAATTTCACACAAAGGAA+AGG + Chr4:70998352-70998371 MsG0480022310.01.T01:CDS 35.0%
AGGATGAAGTTTCAAAGAAG+AGG - Chr4:70997367-70997386 None:intergenic 35.0%
ATCCAAGTTCTTTAGACATG+TGG + Chr4:70997571-70997590 MsG0480022310.01.T01:CDS 35.0%
ATGCAGCAACTTCAGAATTA+AGG - Chr4:70998593-70998612 None:intergenic 35.0%
ATTTCACACAAAGGAAAGGA+TGG + Chr4:70998356-70998375 MsG0480022310.01.T01:CDS 35.0%
GAAAAACTCATATACGATGC+AGG + Chr4:70998509-70998528 MsG0480022310.01.T01:CDS 35.0%
GAGTATGTTTCAAGATGCTA+TGG + Chr4:70997704-70997723 MsG0480022310.01.T01:CDS 35.0%
GCTAATTCAGAAAGAGTCAT+TGG - Chr4:70997345-70997364 None:intergenic 35.0%
GTCATTGTCAATATTGTGTC+CGG - Chr4:70998048-70998067 None:intergenic 35.0%
GTGATGCTTACAATGTTTCT+TGG + Chr4:70998461-70998480 MsG0480022310.01.T01:CDS 35.0%
TACAAAATTACCCCCATTTC+TGG + Chr4:70998542-70998561 MsG0480022310.01.T01:CDS 35.0%
TGGATTAACTGAACTGCAAT+TGG + Chr4:70998427-70998446 MsG0480022310.01.T01:CDS 35.0%
TTCACTTTCTTCAGAACCAT+TGG - Chr4:70997208-70997227 None:intergenic 35.0%
! AAAACAGTGCATTTAAGGTG+AGG - Chr4:70997855-70997874 None:intergenic 35.0%
!! CAATTTTGGTCTATGAAGCA+CGG + Chr4:70998010-70998029 MsG0480022310.01.T01:intron 35.0%
!!! AAAGAGTCATTGGTTTTCCA+TGG - Chr4:70997335-70997354 None:intergenic 35.0%
!!! TCATTGGTTTTCCATGGTTA+TGG - Chr4:70997329-70997348 None:intergenic 35.0%
!!! TGCTGATGCTGTTTTACTTA+AGG + Chr4:70997959-70997978 MsG0480022310.01.T01:CDS 35.0%
AGAGACTTGAAGCCAGAAAT+GGG - Chr4:70998557-70998576 None:intergenic 40.0%
AGTAAAACAGCATCAGCAGA+AGG - Chr4:70997957-70997976 None:intergenic 40.0%
CCTTCAAAGCTTCTCATAAG+TGG + Chr4:70997507-70997526 MsG0480022310.01.T01:CDS 40.0%
CTCCACATGTCTAAAGAACT+TGG - Chr4:70997576-70997595 None:intergenic 40.0%
GAAATGGCTTTCACTACCAA+TGG + Chr4:70997189-70997208 MsG0480022310.01.T01:exon 40.0%
GTAAAACAGCATCAGCAGAA+GGG - Chr4:70997956-70997975 None:intergenic 40.0%
GTTAAGTTACCAACAACCTG+TGG - Chr4:70997885-70997904 None:intergenic 40.0%
TGTGGAGTTCCTCAAAGAAA+TGG + Chr4:70997589-70997608 MsG0480022310.01.T01:CDS 40.0%
TTGGAGTCTCTTGTTGATGT+TGG + Chr4:70997786-70997805 MsG0480022310.01.T01:CDS 40.0%
TTGTTCCCTACTACAGAAGT+AGG + Chr4:70998656-70998675 MsG0480022310.01.T01:three_prime_UTR 40.0%
TTTGATCAACCACAGGTTGT+TGG + Chr4:70997873-70997892 MsG0480022310.01.T01:CDS 40.0%
! CCACTTATGAGAAGCTTTGA+AGG - Chr4:70997510-70997529 None:intergenic 40.0%
! GTGTTAAAAGGCGCAAGAAT+CGG - Chr4:70997410-70997429 None:intergenic 40.0%
! TTGCGCCTTTTAACACACAA+CGG + Chr4:70997414-70997433 MsG0480022310.01.T01:CDS 40.0%
!! CAGGTTGTTGGTAACTTAAC+TGG + Chr4:70997885-70997904 MsG0480022310.01.T01:CDS 40.0%
!! CTTATGAGAAGCTTTGAAGG+AGG - Chr4:70997507-70997526 None:intergenic 40.0%
!!! CACTGTTTTTGATCAACCAC+AGG + Chr4:70997866-70997885 MsG0480022310.01.T01:CDS 40.0%
!!! TTTGTTTTGGGGGTGAAGTT+TGG - Chr4:70997159-70997178 None:intergenic 40.0%
ACACTGTTTGAGTGTGCAAC+AGG + Chr4:70997633-70997652 MsG0480022310.01.T01:CDS 45.0%
ACTGTTTGAGTGTGCAACAG+GGG + Chr4:70997635-70997654 MsG0480022310.01.T01:CDS 45.0%
AGACTTGAAGCCAGAAATGG+GGG - Chr4:70998555-70998574 None:intergenic 45.0%
AGAGAACAAACACGTGTTCG+AGG + Chr4:70997761-70997780 MsG0480022310.01.T01:CDS 45.0%
ATCAGCTATGCCTAGTTCCA+TGG - Chr4:70997301-70997320 None:intergenic 45.0%
CACTGTTTGAGTGTGCAACA+GGG + Chr4:70997634-70997653 MsG0480022310.01.T01:CDS 45.0%
CGAACACGTGTTTGTTCTCT+TGG - Chr4:70997761-70997780 None:intergenic 45.0%
CTCAAATCAGCCATGGAACT+AGG + Chr4:70997288-70997307 MsG0480022310.01.T01:CDS 45.0%
GAGAACAAACACGTGTTCGA+GGG + Chr4:70997762-70997781 MsG0480022310.01.T01:CDS 45.0%
GAGACTTGAAGCCAGAAATG+GGG - Chr4:70998556-70998575 None:intergenic 45.0%
GAGAGACTTGAAGCCAGAAA+TGG - Chr4:70998558-70998577 None:intergenic 45.0%
GAGTCTCTTGTTGATGTTGG+AGG + Chr4:70997789-70997808 MsG0480022310.01.T01:CDS 45.0%
GATGAAACAAGTGACGATCG+TGG + Chr4:70998407-70998426 MsG0480022310.01.T01:CDS 45.0%
GCTGATGCAATCCATAACCA+TGG + Chr4:70997315-70997334 MsG0480022310.01.T01:CDS 45.0%
TCTCTTGTTGATGTTGGAGG+TGG + Chr4:70997792-70997811 MsG0480022310.01.T01:CDS 45.0%
! TACAGTGGGTTCTGCATGAT+TGG + Chr4:70998288-70998307 MsG0480022310.01.T01:intron 45.0%
CAAACACGTGTTCGAGGGTT+TGG + Chr4:70997767-70997786 MsG0480022310.01.T01:CDS 50.0%
CATGGCACTCAAATCAGCCA+TGG + Chr4:70997281-70997300 MsG0480022310.01.T01:CDS 50.0%
GTTGATGTTGGAGGTGGTAC+TGG + Chr4:70997798-70997817 MsG0480022310.01.T01:CDS 50.0%
!! CATGGCTGATTTGAGTGCCA+TGG - Chr4:70997283-70997302 None:intergenic 50.0%
TGCAACAGGGGAGAGCTTCT+GGG + Chr4:70997647-70997666 MsG0480022310.01.T01:CDS 55.0%
! GATGTTGGAGGTGGTACTGG+TGG + Chr4:70997801-70997820 MsG0480022310.01.T01:CDS 55.0%
AGCACGGACACTGCACACAC+CGG + Chr4:70998026-70998045 MsG0480022310.01.T01:intron 60.0%
GTGCAACAGGGGAGAGCTTC+TGG + Chr4:70997646-70997665 MsG0480022310.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 70997123 70998819 70997123 ID=MsG0480022310.01;Name=MsG0480022310.01
Chr4 mRNA 70997123 70998819 70997123 ID=MsG0480022310.01.T01;Parent=MsG0480022310.01;Name=MsG0480022310.01.T01;_AED=0.47;_eAED=0.47;_QI=69|1|1|1|1|1|2|224|363
Chr4 exon 70997123 70997980 70997123 ID=MsG0480022310.01.T01:exon:2335;Parent=MsG0480022310.01.T01
Chr4 exon 70998293 70998819 70998293 ID=MsG0480022310.01.T01:exon:2336;Parent=MsG0480022310.01.T01
Chr4 five_prime_UTR 70997123 70997191 70997123 ID=MsG0480022310.01.T01:five_prime_utr;Parent=MsG0480022310.01.T01
Chr4 CDS 70997192 70997980 70997192 ID=MsG0480022310.01.T01:cds;Parent=MsG0480022310.01.T01
Chr4 CDS 70998293 70998595 70998293 ID=MsG0480022310.01.T01:cds;Parent=MsG0480022310.01.T01
Chr4 three_prime_UTR 70998596 70998819 70998596 ID=MsG0480022310.01.T01:three_prime_utr;Parent=MsG0480022310.01.T01
Gene Sequence

>MsG0480022310.01.T01

ATGGCTTTCACTACCAATGGTTCTGAAGAAAGTGAACTGTATCATGCTCAAATCCATTTGTACAAACATGTATACAACTTTGTTAGTTCCATGGCACTCAAATCAGCCATGGAACTAGGCATAGCTGATGCAATCCATAACCATGGAAAACCAATGACTCTTTCTGAATTAGCCTCTTCTTTGAAACTTCATCCTTCTAAGGTTAATATACTTCACCGATTCTTGCGCCTTTTAACACACAACGGTTTCTTTGCAAAAACAATAGTGAAAGGCAAAGAAGGAGAAGAAGAAGAAATAGCATATTCTCTCACACCTCCTTCAAAGCTTCTCATAAGTGGAAAACCAACATGTTTATCTTCAATTGTTAAAGGAGCACTTCATCCAAGTTCTTTAGACATGTGGAGTTCCTCAAAGAAATGGTTCAATGAAGATAAGGAACAAACACTGTTTGAGTGTGCAACAGGGGAGAGCTTCTGGGATTTTCTTAACAAAGATTCTGAATCTAGTACTTTGAGTATGTTTCAAGATGCTATGGCATCTGATTCTAGAATGTTTAAGCTTGTTCTCCAAGAGAACAAACACGTGTTCGAGGGTTTGGAGTCTCTTGTTGATGTTGGAGGTGGTACTGGTGGTGTCACAAAACTCATTAATGAAATTTTTCCTCACCTTAAATGCACTGTTTTTGATCAACCACAGGTTGTTGGTAACTTAACTGGAAATGAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAATCTATCCCTTCTGCTGATGCTGTTTTACTTAAGTGGGTTCTGCATGATTGGAATGATGAACAATCCTTAAAGATATTGAAGAACAGCAAAGAAGCAATTTCACACAAAGGAAAGGATGGAAAAGTGATTATCATCGATATATCAATTGATGAAACAAGTGACGATCGTGGATTAACTGAACTGCAATTGGACTATGATTTGGTGATGCTTACAATGTTTCTTGGTAAAGAAAGAACAAAGCAAGAATGGGAAAAACTCATATACGATGCAGGTTTTAGCAGCTACAAAATTACCCCCATTTCTGGCTTCAAGTCTCTCATTGAAGTTTATCCTTAA

Protein sequence

>MsG0480022310.01.T01

MAFTTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKHVFEGLESLVDVGGGTGGVTKLINEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP*