AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036661.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036661.01.T01 MTR_7g016820 99.183 367 3 0 95 461 1 367 0.0 762
MsG0780036661.01.T01 MTR_7g016720 99.183 367 3 0 95 461 1 367 0.0 761
MsG0780036661.01.T01 MTR_7g016800 98.638 367 5 0 95 461 1 367 0.0 760
MsG0780036661.01.T01 MTR_7g016780 98.638 367 5 0 95 461 1 367 0.0 758
MsG0780036661.01.T01 MTR_7g016700 98.093 367 7 0 95 461 1 367 0.0 758
MsG0780036661.01.T01 MTR_1g098140 98.093 367 7 0 95 461 1 367 0.0 755
MsG0780036661.01.T01 MTR_5g007730 97.820 367 8 0 95 461 1 367 0.0 754
MsG0780036661.01.T01 MTR_1g097935 97.820 367 8 0 95 461 1 367 0.0 751
MsG0780036661.01.T01 MTR_1g097910 97.820 367 8 0 95 461 1 367 0.0 751
MsG0780036661.01.T01 MTR_5g007760 96.185 367 14 0 95 461 1 367 0.0 744
MsG0780036661.01.T01 MTR_5g007717 95.640 367 16 0 95 461 1 367 0.0 741
MsG0780036661.01.T01 MTR_5g007713 95.640 367 16 0 95 461 1 367 0.0 741
MsG0780036661.01.T01 MTR_3g083920 90.191 367 36 0 95 461 1 367 0.0 711
MsG0780036661.01.T01 MTR_3g083910 89.646 367 38 0 95 461 1 367 0.0 710
MsG0780036661.01.T01 MTR_2g058470 84.555 382 59 0 95 476 1 382 0.0 682
MsG0780036661.01.T01 MTR_3g086260 82.016 367 66 0 95 461 1 367 0.0 647
MsG0780036661.01.T01 MTR_7g084300 80.654 367 71 0 95 461 1 367 0.0 640
MsG0780036661.01.T01 MTR_7g113405 96.441 281 10 0 181 461 1 281 0.0 563
MsG0780036661.01.T01 MTR_3g088675 66.213 367 124 0 95 461 1 367 0.0 547
MsG0780036661.01.T01 MTR_5g007740 80.921 304 58 0 158 461 1 304 0.0 518
MsG0780036661.01.T01 MTR_5g007723 66.933 375 75 5 106 461 32 376 2.03e-172 492
MsG0780036661.01.T01 MTR_5g007770 77.517 298 34 2 164 461 1 265 3.17e-164 466
MsG0780036661.01.T01 MTR_3g088670 47.185 373 183 6 104 465 2 371 3.54e-116 348
MsG0780036661.01.T01 MTR_4g075560 43.333 360 197 4 105 461 13 368 9.18e-94 291
MsG0780036661.01.T01 MTR_4g078730 36.290 372 234 2 92 461 5 375 1.08e-83 265
MsG0780036661.01.T01 MTR_3g108160 96.386 83 3 0 1 83 90 172 5.16e-45 160
MsG0780036661.01.T01 MTR_3g108160 96.386 83 3 0 1 83 90 172 1.78e-44 160
MsG0780036661.01.T01 MTR_5g093600 57.831 83 35 0 1 83 8 90 1.03e-19 89.4
MsG0780036661.01.T01 MTR_5g093600 57.831 83 35 0 1 83 74 156 3.20e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036661.01.T01 AT5G13930 82.514 366 63 1 97 461 8 373 0.0 640
MsG0780036661.01.T01 AT4G34850 41.983 343 196 2 109 449 18 359 3.39e-88 276
MsG0780036661.01.T01 AT4G00040 40.054 372 211 6 95 461 1 365 2.61e-87 274
MsG0780036661.01.T01 AT1G02050 38.781 361 216 4 93 451 9 366 3.39e-78 251
MsG0780036661.01.T01 AT4G34850 41.608 286 165 1 166 449 1 286 8.04e-73 234
MsG0780036661.01.T01 AT3G24350 72.941 85 21 1 1 83 83 167 1.61e-29 119
MsG0780036661.01.T01 AT3G24350 72.941 85 21 1 1 83 97 181 2.09e-29 119
MsG0780036661.01.T01 AT5G05760 54.217 83 38 0 1 83 72 154 5.68e-19 88.6

Find 108 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATAGGTTTCTCAATTTC+TGG 0.117134 7:-11498897 None:intergenic
ACTTGAATGGGTGTATTATT+TGG 0.206196 7:+11499301 MsG0780036661.01.T01:CDS
ATCTTTGGTATCAAATAAAA+TGG 0.258895 7:-11497813 None:intergenic
TCCTAATGTTTGTGAATTCA+TGG 0.271905 7:+11498449 MsG0780036661.01.T01:CDS
AGAGAAGTGCTTAGTGAATA+TGG 0.285983 7:+11499191 MsG0780036661.01.T01:CDS
ATGGGTGTATTATTTGGTTT+TGG 0.289595 7:+11499307 MsG0780036661.01.T01:CDS
CCGATTACAACTCAATCTTT+TGG 0.295351 7:+11499087 MsG0780036661.01.T01:CDS
ATTTATAATTAAGAAGAAAA+TGG 0.302225 7:+11499559 MsG0780036661.01.T01:three_prime_UTR
AACCTATATTTGAGATGGTT+TGG 0.308691 7:+11498910 MsG0780036661.01.T01:CDS
GTTGTTCTCAGCCAAATCTT+TGG 0.312932 7:-11498730 None:intergenic
CTTGTTGGACAAGCACTATT+TGG 0.314421 7:+11498834 MsG0780036661.01.T01:CDS
TCCACTTGATCTAGAATTGC+AGG 0.315800 7:-11499128 None:intergenic
TATCAACTCACCAAACTCTT+AGG 0.335572 7:+11498633 MsG0780036661.01.T01:CDS
TGAATTCATGGCACCTTCAT+TGG 0.343536 7:+11498461 MsG0780036661.01.T01:CDS
GCTTCGGTTGGCCAAAGATT+TGG 0.349225 7:+11498719 MsG0780036661.01.T01:CDS
CTTTGTTCAACACAATTTGC+TGG 0.349776 7:-11497920 None:intergenic
GGTTTCTCAATTTCTGGTAC+TGG 0.354846 7:-11498891 None:intergenic
TCAATGGCTCCTTCACTATC+AGG 0.368167 7:-11498951 None:intergenic
AATTCTTGAATCTCCATTGT+TGG 0.374772 7:-11493797 None:intergenic
AAGTGAGTAATCTTTGACTT+TGG 0.381814 7:-11498567 None:intergenic
CACCTTCTTAAAGATGTTCC+TGG 0.385004 7:+11499005 MsG0780036661.01.T01:CDS
CACTACTAGTCATTCAACTA+TGG 0.387361 7:+11493922 MsG0780036661.01.T01:CDS
CGCTCTTAACTCTGCTGTTG+TGG 0.403619 7:+11493847 MsG0780036661.01.T01:CDS
GAGTTTGGTGAGTTGATAAT+CGG 0.404976 7:-11498628 None:intergenic
CCAAAAGATTGAGTTGTAAT+CGG 0.409783 7:-11499087 None:intergenic
GGAGCTGCTGCACTCATTGT+TGG 0.411529 7:+11498861 MsG0780036661.01.T01:CDS
TGATACCAAAGATATCAAAA+TGG 0.411649 7:+11497823 MsG0780036661.01.T01:CDS
GCCATGAATTCACAAACATT+AGG 0.420204 7:-11498450 None:intergenic
AAGAACATCTTTGAATTCCT+TGG 0.423257 7:-11493981 None:intergenic
CCAATGGCCAAGATAGTTGC+AGG 0.424125 7:-11497887 None:intergenic
CACCTGCAAAACACCCTTGT+TGG 0.425276 7:-11498689 None:intergenic
ACTCACTTGGACAGCCTTGT+TGG 0.426712 7:+11498819 MsG0780036661.01.T01:CDS
TTGCAGGTGGCACGGTGCTT+CGG 0.428855 7:+11498703 MsG0780036661.01.T01:CDS
GTCCAAACCATCTCAAATAT+AGG 0.437103 7:-11498912 None:intergenic
TGCTCATCAATCGTGTCTTT+AGG 0.440887 7:-11493955 None:intergenic
GGTCGAGGCTTTCGAGCCAT+TGG 0.443755 7:+11499058 MsG0780036661.01.T01:CDS
TGGGCGAAGACCTAAGAGTT+TGG 0.450749 7:-11498643 None:intergenic
AGAAGGTCCTGCAACTATCT+TGG 0.450898 7:+11497880 MsG0780036661.01.T01:CDS
GCGCAAAACAACCGTTTCAA+TGG 0.451768 7:-11499341 None:intergenic
GCTGTCCAAGTGAGTATCAC+TGG 0.458078 7:-11498811 None:intergenic
ATCTAGAATTGCAGGTCCAC+CGG 0.463612 7:-11499120 None:intergenic
GCAAGACATGGTGGTGGTAG+AGG 0.469468 7:+11498491 MsG0780036661.01.T01:CDS
CATGTATCTCCTCTTGATCA+TGG 0.469562 7:-11498397 None:intergenic
GTCGAGGCTTTCGAGCCATT+GGG 0.470601 7:+11499059 MsG0780036661.01.T01:CDS
TTCACGAAGGTGACCATCAA+TGG 0.471758 7:-11498967 None:intergenic
AAAGAACATTACTAAAGCAT+TGG 0.475145 7:+11499037 MsG0780036661.01.T01:CDS
GTCACCGCTGTCACATTTCG+TGG 0.482260 7:+11498786 MsG0780036661.01.T01:CDS
CGGTGAAGGCTATAAAAGAA+TGG 0.483789 7:+11498538 MsG0780036661.01.T01:CDS
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 7:+11499006 MsG0780036661.01.T01:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 7:+11498972 MsG0780036661.01.T01:CDS
GATAGTGAAGGAGCCATTGA+TGG 0.488582 7:+11498954 MsG0780036661.01.T01:CDS
TGTTCTTACCATGCGAATTG+AGG 0.494197 7:+11493997 MsG0780036661.01.T01:CDS
CAACGGGAGAAGGACTTGAA+TGG 0.502314 7:+11499288 MsG0780036661.01.T01:CDS
GTCTTCGCCCATATGTGAAA+AGG 0.504788 7:+11498655 MsG0780036661.01.T01:CDS
TGAGAAACCTATATTTGAGA+TGG 0.507221 7:+11498905 MsG0780036661.01.T01:CDS
AAAGACGGATTGAAGACAAC+GGG 0.508808 7:+11499272 MsG0780036661.01.T01:CDS
GGTGAAGGCTATAAAAGAAT+GGG 0.509368 7:+11498539 MsG0780036661.01.T01:CDS
ACCAGGACTTACCATTGAAA+CGG 0.510913 7:+11499330 MsG0780036661.01.T01:CDS
GTGAGTTGATAATCGGCTCC+AGG 0.515720 7:-11498621 None:intergenic
AACGGGAGAAGGACTTGAAT+GGG 0.517580 7:+11499289 MsG0780036661.01.T01:CDS
AGGGAAGGAGGCTGCGGTGA+AGG 0.518723 7:+11498524 MsG0780036661.01.T01:CDS
AGGTGGCACGGTGCTTCGGT+TGG 0.524604 7:+11498707 MsG0780036661.01.T01:CDS
CTGTCCAAGTGAGTATCACT+GGG 0.525567 7:-11498810 None:intergenic
ACCGTTTCAATGGTAAGTCC+TGG 0.536054 7:-11499331 None:intergenic
TGGCACCTTCATTGGATGCA+AGG 0.537065 7:+11498469 MsG0780036661.01.T01:CDS
TCCCAGGAACATCTTTAAGA+AGG 0.550142 7:-11499007 None:intergenic
ATGTTCTTTGAAACAATCCC+AGG 0.550779 7:-11499023 None:intergenic
TGCTGGATTTGCAGTGCCAA+TGG 0.555118 7:-11497903 None:intergenic
GTGGTAGAGGTACCTAGACT+AGG 0.557229 7:+11498504 MsG0780036661.01.T01:CDS
TCTTGCCTTGCATCCAATGA+AGG 0.559885 7:-11498474 None:intergenic
GGACAAGCACTATTTGGAGA+TGG 0.563405 7:+11498840 MsG0780036661.01.T01:CDS
ACCTGCAATTCTAGATCAAG+TGG 0.566779 7:+11499127 MsG0780036661.01.T01:CDS
AGGCATGTCTACACCACTTG+TGG 0.569916 7:-11498601 None:intergenic
TGTAGTGGCGAAAAGGACTT+CGG 0.570029 7:+11493763 None:intergenic
AGAAAGAAATCAACTAAAGA+CGG 0.570835 7:+11499257 MsG0780036661.01.T01:CDS
TCTAGAATTGCAGGTCCACC+GGG 0.570884 7:-11499119 None:intergenic
ACAAGTGGTGTAGACATGCC+TGG 0.572074 7:+11498603 MsG0780036661.01.T01:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 7:-11498833 None:intergenic
CCTGCAACTATCTTGGCCAT+TGG 0.574132 7:+11497887 MsG0780036661.01.T01:CDS
GGATTGAAGACAACGGGAGA+AGG 0.579099 7:+11499278 MsG0780036661.01.T01:CDS
GTGATAAATCCATGATCAAG+AGG 0.584564 7:+11498388 MsG0780036661.01.T01:CDS
TTAATCGTTTGCACCACAAG+TGG 0.591579 7:+11498588 MsG0780036661.01.T01:CDS
TAGACTAGGGAAGGAGGCTG+CGG 0.594599 7:+11498518 MsG0780036661.01.T01:CDS
CATTACTAAAGCATTGGTCG+AGG 0.596202 7:+11499043 MsG0780036661.01.T01:CDS
CGTAAAGCTCAAAGAGCAGA+AGG 0.599601 7:+11497863 MsG0780036661.01.T01:CDS
AGAGGTACCTAGACTAGGGA+AGG 0.600145 7:+11498509 MsG0780036661.01.T01:CDS
AAACAATACCTCAATTCGCA+TGG 0.613238 7:-11494005 None:intergenic
AGTAATTCTAGAAATGAGAG+TGG 0.617720 7:+11493884 MsG0780036661.01.T01:CDS
TGGTAGAGGTACCTAGACTA+GGG 0.618791 7:+11498505 MsG0780036661.01.T01:CDS
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 7:+11498749 MsG0780036661.01.T01:CDS
TGGCCCCAGTGATACTCACT+TGG 0.620487 7:+11498806 MsG0780036661.01.T01:CDS
ATTGGATGCAAGGCAAGACA+TGG 0.621464 7:+11498479 MsG0780036661.01.T01:CDS
GCAGCCTCCTTCCCTAGTCT+AGG 0.626818 7:-11498516 None:intergenic
GGTACCTAGACTAGGGAAGG+AGG 0.631813 7:+11498512 MsG0780036661.01.T01:CDS
ACAATTGCTCCTGATAGTGA+AGG 0.642382 7:+11498942 MsG0780036661.01.T01:CDS
GGTACATGATGTACCAACAA+GGG 0.652620 7:+11498676 MsG0780036661.01.T01:CDS
ACGATTGATGAGCACTACCA+AGG 0.656559 7:+11493964 MsG0780036661.01.T01:CDS
TTGTAATCGGAAATTCCCAA+TGG 0.669069 7:-11499074 None:intergenic
AGGTACATGATGTACCAACA+AGG 0.675679 7:+11498675 MsG0780036661.01.T01:CDS
TAAAGACGGATTGAAGACAA+CGG 0.676404 7:+11499271 MsG0780036661.01.T01:CDS
TGCAAGGCAAGACATGGTGG+TGG 0.676603 7:+11498485 MsG0780036661.01.T01:CDS
GATTTGGCTGAGAACAACAA+AGG 0.678504 7:+11498735 MsG0780036661.01.T01:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 7:-11498980 None:intergenic
GTGAAGGCTATAAAAGAATG+GGG 0.700932 7:+11498540 MsG0780036661.01.T01:CDS
CACAACAGCAGAGTTAAGAG+CGG 0.716379 7:-11493846 None:intergenic
GGGGCCACGAAATGTGACAG+CGG 0.727681 7:-11498790 None:intergenic
GGATGCAAGGCAAGACATGG+TGG 0.736388 7:+11498482 MsG0780036661.01.T01:CDS
TGTCCAAGTGAGTATCACTG+GGG 0.825944 7:-11498809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATAATTAAGAAGAAAA+TGG + Chr7:11499559-11499578 MsG0780036661.01.T01:three_prime_UTR 10.0%
!! TAATTAAATATGATAAATAG+AGG - Chr7:11498037-11498056 None:intergenic 10.0%
!! TTATGTTTCATTAATAATAT+AGG - Chr7:11495461-11495480 None:intergenic 10.0%
!!! TGAATAATTGATAATTTTTT+AGG - Chr7:11496938-11496957 None:intergenic 10.0%
!! AAGAATACATATATTTGAAA+TGG - Chr7:11498153-11498172 None:intergenic 15.0%
!! ATTGTAAAACAAGTTATTTA+TGG + Chr7:11496348-11496367 MsG0780036661.01.T01:intron 15.0%
!! CTAATTTATGAAAAAAATAG+TGG - Chr7:11495658-11495677 None:intergenic 15.0%
!! TCTAATTTATGAAAAAATAG+TGG - Chr7:11495871-11495890 None:intergenic 15.0%
!! TTAATAATATAGGTATAACA+TGG - Chr7:11495451-11495470 None:intergenic 15.0%
!! TTGATATAAAAGACTAATAA+TGG + Chr7:11494651-11494670 MsG0780036661.01.T01:intron 15.0%
!! TTTATATTCAATATAAACGT+CGG - Chr7:11497603-11497622 None:intergenic 15.0%
!!! AAGATTTTGATTTATTATTG+TGG + Chr7:11494611-11494630 MsG0780036661.01.T01:intron 15.0%
!!! ATTGTAAAACATGTTATTTA+TGG + Chr7:11495712-11495731 MsG0780036661.01.T01:intron 15.0%
!!! ATTGTATTATTTTAATAGGA+CGG - Chr7:11499466-11499485 None:intergenic 15.0%
!!! ATTTGTTGAATTTTTTTGAA+AGG + Chr7:11499411-11499430 MsG0780036661.01.T01:CDS 15.0%
!!! ATTTGTTTTAGTTCTATAAA+TGG + Chr7:11494959-11494978 MsG0780036661.01.T01:intron 15.0%
!!! CACAATTGTATTATTTTAAT+AGG - Chr7:11499470-11499489 None:intergenic 15.0%
!!! TAAATAACATGTTTTACAAT+CGG - Chr7:11495712-11495731 None:intergenic 15.0%
!!! TAAATAACTTGTTTTACAAT+CGG - Chr7:11496348-11496367 None:intergenic 15.0%
!!! TATAAGGTTTTAAATAAAGA+GGG + Chr7:11494570-11494589 MsG0780036661.01.T01:intron 15.0%
!!! TTATAAGGTTTTAAATAAAG+AGG + Chr7:11494569-11494588 MsG0780036661.01.T01:intron 15.0%
!!! TTTGTAACGTATTTTAAATA+TGG - Chr7:11498190-11498209 None:intergenic 15.0%
!! AAAACAAGATTATTTACATC+TGG + Chr7:11496000-11496019 MsG0780036661.01.T01:intron 20.0%
!! AAAACCAATCAAATAATAAC+TGG - Chr7:11498317-11498336 None:intergenic 20.0%
!! AAAACGAAATTATTTACATC+TGG + Chr7:11495788-11495807 MsG0780036661.01.T01:intron 20.0%
!! AAACAAGATTATTTACATCT+GGG + Chr7:11496001-11496020 MsG0780036661.01.T01:intron 20.0%
!! AAACGAAATTATTTACATCT+GGG + Chr7:11495789-11495808 MsG0780036661.01.T01:intron 20.0%
!! ACCAATAATAATACAAACAA+TGG - Chr7:11497578-11497597 None:intergenic 20.0%
!! ATATAAACTAGCCAAATATA+TGG + Chr7:11495814-11495833 MsG0780036661.01.T01:intron 20.0%
!! ATCTTTGGTATCAAATAAAA+TGG - Chr7:11497816-11497835 None:intergenic 20.0%
!! ATGCTTGATTAAATTATCAA+GGG + Chr7:11494357-11494376 MsG0780036661.01.T01:intron 20.0%
!! ATTGTAAATCAGGTTATTTA+TGG + Chr7:11496560-11496579 MsG0780036661.01.T01:intron 20.0%
!! GATAAGAAAACAAATTAGAA+TGG + Chr7:11497064-11497083 MsG0780036661.01.T01:intron 20.0%
!! TAAAACAAGTTATTTATGGT+TGG + Chr7:11496352-11496371 MsG0780036661.01.T01:intron 20.0%
!! TAAAATTAACATCAGTACAA+TGG - Chr7:11494522-11494541 None:intergenic 20.0%
!! TAAATAACCTGATTTACAAT+CGG - Chr7:11496560-11496579 None:intergenic 20.0%
!! TAATGGTGTTTACAATTATA+AGG + Chr7:11497270-11497289 MsG0780036661.01.T01:intron 20.0%
!! TTATATTCAATATAAACGTC+GGG - Chr7:11497602-11497621 None:intergenic 20.0%
!!! AGAAAAGTATTACTACTATT+GGG + Chr7:11497012-11497031 MsG0780036661.01.T01:intron 20.0%
!!! AGTTATTATTTGATTGGTTT+TGG + Chr7:11498316-11498335 MsG0780036661.01.T01:intron 20.0%
!!! ATCTATTGATTGTATTGTTA+GGG + Chr7:11494284-11494303 MsG0780036661.01.T01:intron 20.0%
!!! GATGTAAATAATCTTGTTTT+AGG - Chr7:11496000-11496019 None:intergenic 20.0%
!!! GATGTAAATAATTTCGTTTT+AGG - Chr7:11495788-11495807 None:intergenic 20.0%
!!! GTGATTTTAAAGTAAAAATC+AGG - Chr7:11497953-11497972 None:intergenic 20.0%
!!! TAAAACATGTTATTTATGGT+TGG + Chr7:11495716-11495735 MsG0780036661.01.T01:intron 20.0%
!!! TAGTGTTTTTTTATGTGAAT+TGG + Chr7:11498104-11498123 MsG0780036661.01.T01:intron 20.0%
!!! TCTAATTTGTTTTCTTATCA+CGG - Chr7:11497063-11497082 None:intergenic 20.0%
!!! TGATATCAGTAAACAATTTT+AGG - Chr7:11498348-11498367 None:intergenic 20.0%
!!! TGTTTTTGTTTGAAGTTATA+AGG + Chr7:11494554-11494573 MsG0780036661.01.T01:intron 20.0%
!!! TTCATGTTTCTTCAATTTTA+TGG + Chr7:11494991-11495010 MsG0780036661.01.T01:intron 20.0%
! AAAACGAGATTATTTACATC+TGG + Chr7:11496212-11496231 MsG0780036661.01.T01:intron 25.0%
! AAAACGATATTATTTACACC+TGG + Chr7:11496636-11496655 MsG0780036661.01.T01:intron 25.0%
! AAACGAGATTATTTACATCT+GGG + Chr7:11496213-11496232 MsG0780036661.01.T01:intron 25.0%
! AAACGATATTATTTACACCT+GGG + Chr7:11496637-11496656 MsG0780036661.01.T01:intron 25.0%
! AAAGAACATTACTAAAGCAT+TGG + Chr7:11499037-11499056 MsG0780036661.01.T01:CDS 25.0%
! AAAGAGAACAAATAGACAAA+AGG - Chr7:11494449-11494468 None:intergenic 25.0%
! AATATAGGTTTCTCAATTTC+TGG - Chr7:11498900-11498919 None:intergenic 25.0%
! ACTAATAATGGTATATAAGC+TGG + Chr7:11494663-11494682 MsG0780036661.01.T01:intron 25.0%
! AGAAAAACTAGCCAAATATA+TGG + Chr7:11496662-11496681 MsG0780036661.01.T01:intron 25.0%
! AGAAAGAAATCAACTAAAGA+CGG + Chr7:11499257-11499276 MsG0780036661.01.T01:CDS 25.0%
! ATAATAATACAAACAATGGC+TGG - Chr7:11497574-11497593 None:intergenic 25.0%
! ATAATGTGTATCAATTTGGT+AGG - Chr7:11498252-11498271 None:intergenic 25.0%
! ATTATTTGCTTAGAAACTCA+AGG - Chr7:11494834-11494853 None:intergenic 25.0%
! CATGCTTGATTAAATTATCA+AGG + Chr7:11494356-11494375 MsG0780036661.01.T01:intron 25.0%
! CATTTCTTTATAACTACTTC+AGG + Chr7:11498366-11498385 MsG0780036661.01.T01:intron 25.0%
! CTTATATGTGCAAAAAATAG+TGG - Chr7:11496719-11496738 None:intergenic 25.0%
! GAAGAATAAAAATAGTGTAG+TGG + Chr7:11495373-11495392 MsG0780036661.01.T01:intron 25.0%
! GCAAATAATGTGTATCAATT+TGG - Chr7:11498256-11498275 None:intergenic 25.0%
! GCCATTGTTTGTATTATTAT+TGG + Chr7:11497574-11497593 MsG0780036661.01.T01:intron 25.0%
! GGTTATATTGTTCGTTTATT+TGG - Chr7:11496752-11496771 None:intergenic 25.0%
! TAAATCAGGTTATTTATGGT+TGG + Chr7:11496564-11496583 MsG0780036661.01.T01:intron 25.0%
! TACAATATAATACCAAGCAA+AGG + Chr7:11495202-11495221 MsG0780036661.01.T01:intron 25.0%
! TCAAATCCATAGACATAAAA+AGG - Chr7:11495105-11495124 None:intergenic 25.0%
! TCAGACAAATGAATAAAAAG+AGG + Chr7:11496958-11496977 MsG0780036661.01.T01:intron 25.0%
! TCTTGAACAATACTATAGTA+TGG + Chr7:11495502-11495521 MsG0780036661.01.T01:intron 25.0%
! TGATACCAAAGATATCAAAA+TGG + Chr7:11497823-11497842 MsG0780036661.01.T01:CDS 25.0%
! TTGAGTTTCTAAGCAAATAA+TGG + Chr7:11494833-11494852 MsG0780036661.01.T01:intron 25.0%
! TTGCTATGTACATAACTAAA+TGG + Chr7:11494908-11494927 MsG0780036661.01.T01:intron 25.0%
!! ATAAACAATCTCTTGTTTCT+TGG - Chr7:11494396-11494415 None:intergenic 25.0%
!! ATATAACCATAATTTGTCGA+AGG + Chr7:11496764-11496783 MsG0780036661.01.T01:intron 25.0%
!! ATGGATAACAACACATATTT+TGG + Chr7:11495010-11495029 MsG0780036661.01.T01:intron 25.0%
!! CATCTATTGATTGTATTGTT+AGG + Chr7:11494283-11494302 MsG0780036661.01.T01:intron 25.0%
!! CTTTAGCATAATTGTTTTCA+AGG - Chr7:11494934-11494953 None:intergenic 25.0%
!! GAATAGAAGACAATTGTTTT+CGG + Chr7:11494121-11494140 MsG0780036661.01.T01:intron 25.0%
!! GATGTAAATAATCTCGTTTT+AGG - Chr7:11496212-11496231 None:intergenic 25.0%
!! GGTGTAAATAATATCGTTTT+AGG - Chr7:11496636-11496655 None:intergenic 25.0%
!! TATGCTCTTTTAAATTTACC+AGG + Chr7:11495424-11495443 MsG0780036661.01.T01:intron 25.0%
!! TCTATTGATTGTATTGTTAG+GGG + Chr7:11494285-11494304 MsG0780036661.01.T01:intron 25.0%
!! TGTAAACCTTTTTATGTCTA+TGG + Chr7:11495096-11495115 MsG0780036661.01.T01:intron 25.0%
!! TTTGTCTATTTGTTCTCTTT+TGG + Chr7:11494449-11494468 MsG0780036661.01.T01:intron 25.0%
!!! AATTATAAGGAGTGTTTGAA+GGG + Chr7:11497283-11497302 MsG0780036661.01.T01:intron 25.0%
!!! CAGAAAAGTATTACTACTAT+TGG + Chr7:11497011-11497030 MsG0780036661.01.T01:intron 25.0%
!!! GTTGAATTTTTTTGAAAGGA+TGG + Chr7:11499415-11499434 MsG0780036661.01.T01:CDS 25.0%
!!! TAAAATGGAGTACTGAAATT+TGG - Chr7:11497801-11497820 None:intergenic 25.0%
AAGAACATCTTTGAATTCCT+TGG - Chr7:11493984-11494003 None:intergenic 30.0%
AATTCTTGAATCTCCATTGT+TGG - Chr7:11493800-11493819 None:intergenic 30.0%
ACTTGAATGGGTGTATTATT+TGG + Chr7:11499301-11499320 MsG0780036661.01.T01:CDS 30.0%
AGAAACTATCAAATGTTTCC+AGG + Chr7:11494796-11494815 MsG0780036661.01.T01:intron 30.0%
CGAATGAGAATGAAAGTTAT+GGG + Chr7:11497204-11497223 MsG0780036661.01.T01:intron 30.0%
GAAAATGTGTTATGCGTTAA+TGG + Chr7:11497253-11497272 MsG0780036661.01.T01:intron 30.0%
GAAACTATCAAATGTTTCCA+GGG + Chr7:11494797-11494816 MsG0780036661.01.T01:intron 30.0%
GAACTACAATCTCATACAAA+GGG - Chr7:11495072-11495091 None:intergenic 30.0%
GAGACCAGTTATTATTTGAT+TGG + Chr7:11498310-11498329 MsG0780036661.01.T01:intron 30.0%
GGAATCCTTTGATGTAAAAA+GGG - Chr7:11496863-11496882 None:intergenic 30.0%
GTCACGTATTTGTAAAAATG+TGG - Chr7:11495636-11495655 None:intergenic 30.0%
TAATTAAACGTTATCGCACT+GGG - Chr7:11497115-11497134 None:intergenic 30.0%
TAGGTTTATGCATACAAATC+AGG + Chr7:11494733-11494752 MsG0780036661.01.T01:intron 30.0%
TCCTAATGTTTGTGAATTCA+TGG + Chr7:11498449-11498468 MsG0780036661.01.T01:CDS 30.0%
TCGAATGAGAATGAAAGTTA+TGG + Chr7:11497203-11497222 MsG0780036661.01.T01:intron 30.0%
TGAACTACAATCTCATACAA+AGG - Chr7:11495073-11495092 None:intergenic 30.0%
TGACAGACTAACATAAAGAA+TGG - Chr7:11494880-11494899 None:intergenic 30.0%
TGAGAAACCTATATTTGAGA+TGG + Chr7:11498905-11498924 MsG0780036661.01.T01:CDS 30.0%
TGGAATCCTTTGATGTAAAA+AGG - Chr7:11496864-11496883 None:intergenic 30.0%
TGGTTGAAAATACATACCTA+CGG + Chr7:11497084-11497103 MsG0780036661.01.T01:intron 30.0%
TTCAAATTGCTATCTTCACA+TGG - Chr7:11495048-11495067 None:intergenic 30.0%
! AACCTATATTTGAGATGGTT+TGG + Chr7:11498910-11498929 MsG0780036661.01.T01:CDS 30.0%
! AAGTGAGTAATCTTTGACTT+TGG - Chr7:11498570-11498589 None:intergenic 30.0%
! AGTAATTCTAGAAATGAGAG+TGG + Chr7:11493884-11493903 MsG0780036661.01.T01:CDS 30.0%
! ATCATGTACCTTTTCACATA+TGG - Chr7:11498666-11498685 None:intergenic 30.0%
! ATTTGATGATCTTCATCATG+TGG - Chr7:11495237-11495256 None:intergenic 30.0%
! CCAAAAGATTGAGTTGTAAT+CGG - Chr7:11499090-11499109 None:intergenic 30.0%
! GCATCATATTTTATGCTGTT+AGG - Chr7:11496841-11496860 None:intergenic 30.0%
! TCATGTACCTTTTCACATAT+GGG - Chr7:11498665-11498684 None:intergenic 30.0%
! TTTTGAATGCAGGGAAAAAA+TGG - Chr7:11496795-11496814 None:intergenic 30.0%
! TTTTTCCCTGCATTCAAAAT+TGG + Chr7:11496796-11496815 MsG0780036661.01.T01:intron 30.0%
!! AACAACACATATTTTGGACT+GGG + Chr7:11495016-11495035 MsG0780036661.01.T01:intron 30.0%
!! ACTCACCATTTTGATATCTT+TGG - Chr7:11497831-11497850 None:intergenic 30.0%
!! ATGGGTGTATTATTTGGTTT+TGG + Chr7:11499307-11499326 MsG0780036661.01.T01:CDS 30.0%
!! ATTCATCTTTTCAGGCTTTA+AGG - Chr7:11499165-11499184 None:intergenic 30.0%
!! CAATTATAAGGAGTGTTTGA+AGG + Chr7:11497282-11497301 MsG0780036661.01.T01:intron 30.0%
!! TAACAACACATATTTTGGAC+TGG + Chr7:11495015-11495034 MsG0780036661.01.T01:intron 30.0%
AAACAATACCTCAATTCGCA+TGG - Chr7:11494008-11494027 None:intergenic 35.0%
AAAGAGGAATGGACAAAAGA+TGG + Chr7:11497481-11497500 MsG0780036661.01.T01:intron 35.0%
AAGTTTATCACGCCTAAAGA+CGG - Chr7:11495900-11495919 None:intergenic 35.0%
ACCTTCTTAAAGATGTTCCT+GGG + Chr7:11499006-11499025 MsG0780036661.01.T01:CDS 35.0%
AGAGTATAGTGCATATTGGA+GGG - Chr7:11497682-11497701 None:intergenic 35.0%
ATAATACCAAGCAAAGGTTC+AGG + Chr7:11495208-11495227 MsG0780036661.01.T01:intron 35.0%
ATAATGGTATATAAGCTGGC+AGG + Chr7:11494667-11494686 MsG0780036661.01.T01:intron 35.0%
ATATAGGTATAACATGGTCC+TGG - Chr7:11495445-11495464 None:intergenic 35.0%
ATCAAATGAGATCATGCGTT+CGG + Chr7:11496394-11496413 MsG0780036661.01.T01:intron 35.0%
ATGAGAATGAAAGTTATGGG+CGG + Chr7:11497207-11497226 MsG0780036661.01.T01:intron 35.0%
ATTAGAACTTGTCCGTCTTT+AGG + Chr7:11495673-11495692 MsG0780036661.01.T01:intron 35.0%
CAATGCAAAAACATGGCAAT+TGG - Chr7:11496907-11496926 None:intergenic 35.0%
CACTACTAGTCATTCAACTA+TGG + Chr7:11493922-11493941 MsG0780036661.01.T01:CDS 35.0%
CAGGTTATTTATGGTTGGAA+AGG + Chr7:11496569-11496588 MsG0780036661.01.T01:intron 35.0%
CTACAATATTGTCGTAGCTT+GGG + Chr7:11495174-11495193 MsG0780036661.01.T01:intron 35.0%
CTACCTACAATGCAAAAACA+TGG - Chr7:11496914-11496933 None:intergenic 35.0%
CTTTGTTCAACACAATTTGC+TGG - Chr7:11497923-11497942 None:intergenic 35.0%
GCCATGAATTCACAAACATT+AGG - Chr7:11498453-11498472 None:intergenic 35.0%
GGTCATACAGACCATATATT+TGG - Chr7:11495828-11495847 None:intergenic 35.0%
GGTGAAGGCTATAAAAGAAT+GGG + Chr7:11498539-11498558 MsG0780036661.01.T01:CDS 35.0%
GTAATTAAACGTTATCGCAC+TGG - Chr7:11497116-11497135 None:intergenic 35.0%
GTCACGCATATGTAAAAATG+TGG - Chr7:11496697-11496716 None:intergenic 35.0%
GTCCAAACCATCTCAAATAT+AGG - Chr7:11498915-11498934 None:intergenic 35.0%
GTGAAGGCTATAAAAGAATG+GGG + Chr7:11498540-11498559 MsG0780036661.01.T01:CDS 35.0%
GTGATAAATCCATGATCAAG+AGG + Chr7:11498388-11498407 MsG0780036661.01.T01:CDS 35.0%
TATCAACTCACCAAACTCTT+AGG + Chr7:11498633-11498652 MsG0780036661.01.T01:CDS 35.0%
TCTACAATATTGTCGTAGCT+TGG + Chr7:11495173-11495192 MsG0780036661.01.T01:intron 35.0%
TGAAATGGAACCTAGAAAAG+TGG - Chr7:11498138-11498157 None:intergenic 35.0%
TTGTAATCGGAAATTCCCAA+TGG - Chr7:11499077-11499096 None:intergenic 35.0%
TTGTGGTGCAAAGATGTTTA+GGG - Chr7:11497726-11497745 None:intergenic 35.0%
! AATCTTTTCCCAAAGAGGAA+TGG + Chr7:11497470-11497489 MsG0780036661.01.T01:intron 35.0%
! ATCTTTTGTCCATTCCTCTT+TGG - Chr7:11497482-11497501 None:intergenic 35.0%
! ATTCCTCTTTGGGAAAAGAT+TGG - Chr7:11497471-11497490 None:intergenic 35.0%
! CAAAGATGTTTAGGGTGATA+TGG - Chr7:11497718-11497737 None:intergenic 35.0%
! CCGATTACAACTCAATCTTT+TGG + Chr7:11499087-11499106 MsG0780036661.01.T01:CDS 35.0%
! CTAGTTGCATTCATCTTTTC+AGG - Chr7:11499173-11499192 None:intergenic 35.0%
! GAAGAGAGTATAGTGCATAT+TGG - Chr7:11497686-11497705 None:intergenic 35.0%
! TCTTTTGTCCATTCCTCTTT+GGG - Chr7:11497481-11497500 None:intergenic 35.0%
! TGATGCCCTTTTTACATCAA+AGG + Chr7:11496855-11496874 MsG0780036661.01.T01:intron 35.0%
! TGCAGTATGACTCAATTTTC+AGG + Chr7:11494479-11494498 MsG0780036661.01.T01:intron 35.0%
!! AGAGAAGTGCTTAGTGAATA+TGG + Chr7:11499191-11499210 MsG0780036661.01.T01:CDS 35.0%
!! ATGTTCTTTGAAACAATCCC+AGG - Chr7:11499026-11499045 None:intergenic 35.0%
!! CATGTTTTTGCATTGTAGGT+AGG + Chr7:11496912-11496931 MsG0780036661.01.T01:intron 35.0%
!! GAGTTTGGTGAGTTGATAAT+CGG - Chr7:11498631-11498650 None:intergenic 35.0%
!! GGACTAATTACCACTTTTCT+AGG + Chr7:11498125-11498144 MsG0780036661.01.T01:intron 35.0%
!! GGTTTTTGATGATCCAACAA+TGG + Chr7:11493784-11493803 MsG0780036661.01.T01:CDS 35.0%
!! TAAAGACGGATTGAAGACAA+CGG + Chr7:11499271-11499290 MsG0780036661.01.T01:CDS 35.0%
!! TCGCACTATGTATGGTTTTA+TGG + Chr7:11495560-11495579 MsG0780036661.01.T01:intron 35.0%
!! TTGCCATGTTTTTGCATTGT+AGG + Chr7:11496908-11496927 MsG0780036661.01.T01:intron 35.0%
!!! GTATTATTTGGTTTTGGACC+AGG + Chr7:11499313-11499332 MsG0780036661.01.T01:CDS 35.0%
AAAAATGCCCATGCCACATA+AGG + Chr7:11497410-11497429 MsG0780036661.01.T01:intron 40.0%
AAAATGCCCATGCCACATAA+GGG + Chr7:11497411-11497430 MsG0780036661.01.T01:intron 40.0%
AACCGTGTTCACTCGAATAA+AGG + Chr7:11495286-11495305 MsG0780036661.01.T01:intron 40.0%
ACCAGGACTTACCATTGAAA+CGG + Chr7:11499330-11499349 MsG0780036661.01.T01:CDS 40.0%
ACCTGCAATTCTAGATCAAG+TGG + Chr7:11499127-11499146 MsG0780036661.01.T01:CDS 40.0%
AGGTACATGATGTACCAACA+AGG + Chr7:11498675-11498694 MsG0780036661.01.T01:CDS 40.0%
ATAAATTACCCACTAGCCCA+TGG - Chr7:11494238-11494257 None:intergenic 40.0%
CAAATAGTGCTTGTCCAACA+AGG - Chr7:11498836-11498855 None:intergenic 40.0%
CACCTTCTTAAAGATGTTCC+TGG + Chr7:11499005-11499024 MsG0780036661.01.T01:CDS 40.0%
CATGTATCTCCTCTTGATCA+TGG - Chr7:11498400-11498419 None:intergenic 40.0%
CCATACATAGTGCGATTAGA+AGG - Chr7:11495555-11495574 None:intergenic 40.0%
CCTTCTAATCGCACTATGTA+TGG + Chr7:11495552-11495571 MsG0780036661.01.T01:intron 40.0%
CGGTGAAGGCTATAAAAGAA+TGG + Chr7:11498538-11498557 MsG0780036661.01.T01:CDS 40.0%
CTTGTTGGACAAGCACTATT+TGG + Chr7:11498834-11498853 MsG0780036661.01.T01:CDS 40.0%
GAAAGGGTTGAAGAATGTTG+TGG - Chr7:11497743-11497762 None:intergenic 40.0%
GAGATCTAAGAGAGAGAAGA+GGG + Chr7:11497359-11497378 MsG0780036661.01.T01:intron 40.0%
GAGTTTATCACGCCTAAAGA+CGG - Chr7:11495688-11495707 None:intergenic 40.0%
GATTTGGCTGAGAACAACAA+AGG + Chr7:11498735-11498754 MsG0780036661.01.T01:CDS 40.0%
GGACAAAAGATGGTCTTCAA+AGG + Chr7:11497491-11497510 MsG0780036661.01.T01:intron 40.0%
GGTACATGATGTACCAACAA+GGG + Chr7:11498676-11498695 MsG0780036661.01.T01:CDS 40.0%
GTCCTTTATTCGAGTGAACA+CGG - Chr7:11495291-11495310 None:intergenic 40.0%
GTTACGCCTTCGACAAATTA+TGG - Chr7:11496773-11496792 None:intergenic 40.0%
GTTGTGGTGCAAAGATGTTT+AGG - Chr7:11497727-11497746 None:intergenic 40.0%
GTTGTTCTCAGCCAAATCTT+TGG - Chr7:11498733-11498752 None:intergenic 40.0%
TCAAGAAATCGTGTCAAGAG+CGG + Chr7:11495314-11495333 MsG0780036661.01.T01:intron 40.0%
TGAATTCATGGCACCTTCAT+TGG + Chr7:11498461-11498480 MsG0780036661.01.T01:CDS 40.0%
TGAGAATGAAAGTTATGGGC+GGG + Chr7:11497208-11497227 MsG0780036661.01.T01:intron 40.0%
TGCTCATCAATCGTGTCTTT+AGG - Chr7:11493958-11493977 None:intergenic 40.0%
TGTTCTTACCATGCGAATTG+AGG + Chr7:11493997-11494016 MsG0780036661.01.T01:CDS 40.0%
TTAATCGTTTGCACCACAAG+TGG + Chr7:11498588-11498607 MsG0780036661.01.T01:CDS 40.0%
TTCTGAGTGAGTGATGTTGT+TGG - Chr7:11497145-11497164 None:intergenic 40.0%
! AAACTCGCCGATTGTAAATC+AGG + Chr7:11496550-11496569 MsG0780036661.01.T01:intron 40.0%
! ACAATTGCTCCTGATAGTGA+AGG + Chr7:11498942-11498961 MsG0780036661.01.T01:CDS 40.0%
! ATCTTTTGGATTGCACATCC+CGG + Chr7:11499101-11499120 MsG0780036661.01.T01:CDS 40.0%
! GACAGCCAATTTTGAATGCA+GGG - Chr7:11496804-11496823 None:intergenic 40.0%
! GAGAGTATAGTGCATATTGG+AGG - Chr7:11497683-11497702 None:intergenic 40.0%
! GGGGCTTTAGTTAAGCATAT+AGG + Chr7:11494304-11494323 MsG0780036661.01.T01:intron 40.0%
! TCACCAATCTTTTCCCAAAG+AGG + Chr7:11497465-11497484 MsG0780036661.01.T01:intron 40.0%
! TCCACTTGATCTAGAATTGC+AGG - Chr7:11499131-11499150 None:intergenic 40.0%
! TCCCAGGAACATCTTTAAGA+AGG - Chr7:11499010-11499029 None:intergenic 40.0%
! TGACAGCCAATTTTGAATGC+AGG - Chr7:11496805-11496824 None:intergenic 40.0%
!! AAAGACGGATTGAAGACAAC+GGG + Chr7:11499272-11499291 MsG0780036661.01.T01:CDS 40.0%
!! ACAAATCAGGTGCTATTAGC+TGG + Chr7:11494746-11494765 MsG0780036661.01.T01:intron 40.0%
!! CATTACTAAAGCATTGGTCG+AGG + Chr7:11499043-11499062 MsG0780036661.01.T01:CDS 40.0%
!! GGTTTCTCAATTTCTGGTAC+TGG - Chr7:11498894-11498913 None:intergenic 40.0%
!!! TTGGCTAGTTTTTCTTTCCC+AGG - Chr7:11496657-11496676 None:intergenic 40.0%
AAATGCCCATGCCACATAAG+GGG + Chr7:11497412-11497431 MsG0780036661.01.T01:intron 45.0%
AACCTAGTCGTATCTCTCGT+CGG - Chr7:11494719-11494738 None:intergenic 45.0%
AACGGACGTTGACGTATGAA+AGG - Chr7:11494172-11494191 None:intergenic 45.0%
AACGGGAGAAGGACTTGAAT+GGG + Chr7:11499289-11499308 MsG0780036661.01.T01:CDS 45.0%
AAGAAATCGTGTCAAGAGCG+GGG + Chr7:11495316-11495335 MsG0780036661.01.T01:intron 45.0%
ACCGTTTCAATGGTAAGTCC+TGG - Chr7:11499334-11499353 None:intergenic 45.0%
ACGATTGATGAGCACTACCA+AGG + Chr7:11493964-11493983 MsG0780036661.01.T01:CDS 45.0%
AGAAGGTCCTGCAACTATCT+TGG + Chr7:11497880-11497899 MsG0780036661.01.T01:CDS 45.0%
AGAGTGAGAGGGAGAAGAAA+GGG + Chr7:11497337-11497356 MsG0780036661.01.T01:intron 45.0%
AGTGTTTGAAGGGAGAGAGT+GGG + Chr7:11497293-11497312 MsG0780036661.01.T01:intron 45.0%
ATACACCCCTTATGTGGCAT+GGG - Chr7:11497420-11497439 None:intergenic 45.0%
ATGGAAGAGTGGTATGGAGA+AGG + Chr7:11497438-11497457 MsG0780036661.01.T01:intron 45.0%
ATGTTAGTCCAGCTTCACGA+AGG - Chr7:11498983-11499002 None:intergenic 45.0%
ATTCCACTCTTGCCATGCTT+CGG + Chr7:11496878-11496897 MsG0780036661.01.T01:intron 45.0%
ATTGGATGCAAGGCAAGACA+TGG + Chr7:11498479-11498498 MsG0780036661.01.T01:CDS 45.0%
CAAGAAATCGTGTCAAGAGC+GGG + Chr7:11495315-11495334 MsG0780036661.01.T01:intron 45.0%
CACAACAGCAGAGTTAAGAG+CGG - Chr7:11493849-11493868 None:intergenic 45.0%
CGTAAAGCTCAAAGAGCAGA+AGG + Chr7:11497863-11497882 MsG0780036661.01.T01:CDS 45.0%
CTGTCCAAGTGAGTATCACT+GGG - Chr7:11498813-11498832 None:intergenic 45.0%
GAGAATGAAAGTTATGGGCG+GGG + Chr7:11497209-11497228 MsG0780036661.01.T01:intron 45.0%
GATAGTGAAGGAGCCATTGA+TGG + Chr7:11498954-11498973 MsG0780036661.01.T01:CDS 45.0%
GCAGCTGTCTTTGTAGCTAA+CGG - Chr7:11494190-11494209 None:intergenic 45.0%
GCGCAAAACAACCGTTTCAA+TGG - Chr7:11499344-11499363 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG + Chr7:11498840-11498859 MsG0780036661.01.T01:CDS 45.0%
GGAGATCTAAGAGAGAGAAG+AGG + Chr7:11497358-11497377 MsG0780036661.01.T01:intron 45.0%
GTCTTCGCCCATATGTGAAA+AGG + Chr7:11498655-11498674 MsG0780036661.01.T01:CDS 45.0%
TCAAGGATCTTTAGATGCCC+TGG - Chr7:11494817-11494836 None:intergenic 45.0%
TCAATGGCTCCTTCACTATC+AGG - Chr7:11498954-11498973 None:intergenic 45.0%
TCTTCCATACACCCCTTATG+TGG - Chr7:11497426-11497445 None:intergenic 45.0%
TCTTGCCTTGCATCCAATGA+AGG - Chr7:11498477-11498496 None:intergenic 45.0%
TGGAAGAGTGGTATGGAGAA+GGG + Chr7:11497439-11497458 MsG0780036661.01.T01:intron 45.0%
TGGATACCTGAACCTTTGCT+TGG - Chr7:11495217-11495236 None:intergenic 45.0%
TGTCCAAGTGAGTATCACTG+GGG - Chr7:11498812-11498831 None:intergenic 45.0%
TTCACGAAGGTGACCATCAA+TGG - Chr7:11498970-11498989 None:intergenic 45.0%
TTCTTATCACGGCGTCTGTA+AGG - Chr7:11497052-11497071 None:intergenic 45.0%
TTTCCCACCAAACTCCAACA+GGG + Chr7:11497525-11497544 MsG0780036661.01.T01:intron 45.0%
! AGATGGTCTTCAAAGGCATG+CGG + Chr7:11497498-11497517 MsG0780036661.01.T01:intron 45.0%
! ATAAGGGGTGTATGGAAGAG+TGG + Chr7:11497427-11497446 MsG0780036661.01.T01:intron 45.0%
! ATCTAGAATTGCAGGTCCAC+CGG - Chr7:11499123-11499142 None:intergenic 45.0%
! TTTTAGGCGAATCGAACGCA+TGG - Chr7:11495984-11496003 None:intergenic 45.0%
!! TGCTATTAGCTGGTGTTGGT+TGG + Chr7:11494756-11494775 MsG0780036661.01.T01:intron 45.0%
!! TGGTAGAGGTACCTAGACTA+GGG + Chr7:11498505-11498524 MsG0780036661.01.T01:CDS 45.0%
!!! TACCAACAAGGGTGTTTTGC+AGG + Chr7:11498687-11498706 MsG0780036661.01.T01:CDS 45.0%
AATTACCCACTAGCCCATGG+AGG - Chr7:11494235-11494254 None:intergenic 50.0%
ACAAGTGGTGTAGACATGCC+TGG + Chr7:11498603-11498622 MsG0780036661.01.T01:CDS 50.0%
AGGCATGTCTACACCACTTG+TGG - Chr7:11498604-11498623 None:intergenic 50.0%
ATCCGACGAGAGATACGACT+AGG + Chr7:11494714-11494733 MsG0780036661.01.T01:intron 50.0%
CAACGGGAGAAGGACTTGAA+TGG + Chr7:11499288-11499307 MsG0780036661.01.T01:CDS 50.0%
CACCTGCAAAACACCCTTGT+TGG - Chr7:11498692-11498711 None:intergenic 50.0%
CAGAGTGAGAGGGAGAAGAA+AGG + Chr7:11497336-11497355 MsG0780036661.01.T01:intron 50.0%
CATACACCCCTTATGTGGCA+TGG - Chr7:11497421-11497440 None:intergenic 50.0%
CCAATGGCCAAGATAGTTGC+AGG - Chr7:11497890-11497909 None:intergenic 50.0%
CCTGCAACTATCTTGGCCAT+TGG + Chr7:11497887-11497906 MsG0780036661.01.T01:CDS 50.0%
CGCTCTTAACTCTGCTGTTG+TGG + Chr7:11493847-11493866 MsG0780036661.01.T01:CDS 50.0%
CTCCAACAGGGTCAAGTCAT+TGG + Chr7:11497537-11497556 MsG0780036661.01.T01:intron 50.0%
CTCGTATCACTCTTCACCCA+CGG - Chr7:11495353-11495372 None:intergenic 50.0%
GACTTGACCCTGTTGGAGTT+TGG - Chr7:11497535-11497554 None:intergenic 50.0%
GAGTGTTTGAAGGGAGAGAG+TGG + Chr7:11497292-11497311 MsG0780036661.01.T01:intron 50.0%
GCTGTCCAAGTGAGTATCAC+TGG - Chr7:11498814-11498833 None:intergenic 50.0%
GGATTGAAGACAACGGGAGA+AGG + Chr7:11499278-11499297 MsG0780036661.01.T01:CDS 50.0%
GGGTGTATGGAAGAGTGGTA+TGG + Chr7:11497432-11497451 MsG0780036661.01.T01:intron 50.0%
GTTTCCCACCAAACTCCAAC+AGG + Chr7:11497524-11497543 MsG0780036661.01.T01:intron 50.0%
TGACCCTGTTGGAGTTTGGT+GGG - Chr7:11497531-11497550 None:intergenic 50.0%
TGCCAATGACTTGACCCTGT+TGG - Chr7:11497542-11497561 None:intergenic 50.0%
TGCTGGATTTGCAGTGCCAA+TGG - Chr7:11497906-11497925 None:intergenic 50.0%
TGGCACCTTCATTGGATGCA+AGG + Chr7:11498469-11498488 MsG0780036661.01.T01:CDS 50.0%
TGGGCGAAGACCTAAGAGTT+TGG - Chr7:11498646-11498665 None:intergenic 50.0%
TTCCACTCTTGCCATGCTTC+GGG + Chr7:11496879-11496898 MsG0780036661.01.T01:intron 50.0%
TTGACCCTGTTGGAGTTTGG+TGG - Chr7:11497532-11497551 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG + Chr7:11498819-11498838 MsG0780036661.01.T01:CDS 50.0%
! ATGGTCTTCAAAGGCATGCG+GGG + Chr7:11497500-11497519 MsG0780036661.01.T01:intron 50.0%
! CATGCCACATAAGGGGTGTA+TGG + Chr7:11497419-11497438 MsG0780036661.01.T01:intron 50.0%
! GATGGTCTTCAAAGGCATGC+GGG + Chr7:11497499-11497518 MsG0780036661.01.T01:intron 50.0%
! GCTTCGGTTGGCCAAAGATT+TGG + Chr7:11498719-11498738 MsG0780036661.01.T01:CDS 50.0%
! TCTAGAATTGCAGGTCCACC+GGG - Chr7:11499122-11499141 None:intergenic 50.0%
! TTTTGGATTGCACATCCCGG+TGG + Chr7:11499104-11499123 MsG0780036661.01.T01:CDS 50.0%
!! AGAGGTACCTAGACTAGGGA+AGG + Chr7:11498509-11498528 MsG0780036661.01.T01:CDS 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG + Chr7:11498749-11498768 MsG0780036661.01.T01:CDS 50.0%
!! CAGGTGCTATTAGCTGGTGT+TGG + Chr7:11494752-11494771 MsG0780036661.01.T01:intron 50.0%
!! GTGAGTTGATAATCGGCTCC+AGG - Chr7:11498624-11498643 None:intergenic 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG + Chr7:11498504-11498523 MsG0780036661.01.T01:CDS 50.0%
!!! CAACAAGGGTGTTTTGCAGG+TGG + Chr7:11498690-11498709 MsG0780036661.01.T01:CDS 50.0%
CGTGGGTGAAGAGTGATACG+AGG + Chr7:11495351-11495370 MsG0780036661.01.T01:intron 55.0%
CTCTGCCTCTCACTCACTTC+TGG - Chr7:11497321-11497340 None:intergenic 55.0%
GAGTGAGAGGCAGAGTGAGA+GGG + Chr7:11497326-11497345 MsG0780036661.01.T01:intron 55.0%
GATGGTCACCTTCGTGAAGC+TGG + Chr7:11498972-11498991 MsG0780036661.01.T01:CDS 55.0%
GGAGCTGCTGCACTCATTGT+TGG + Chr7:11498861-11498880 MsG0780036661.01.T01:CDS 55.0%
GGATGCAAGGCAAGACATGG+TGG + Chr7:11498482-11498501 MsG0780036661.01.T01:CDS 55.0%
GGGAACCAGAAGTGAGTGAG+AGG + Chr7:11497313-11497332 MsG0780036661.01.T01:intron 55.0%
GGTACCTAGACTAGGGAAGG+AGG + Chr7:11498512-11498531 MsG0780036661.01.T01:CDS 55.0%
GTCACCGCTGTCACATTTCG+TGG + Chr7:11498786-11498805 MsG0780036661.01.T01:CDS 55.0%
GTCGAGGCTTTCGAGCCATT+GGG + Chr7:11499059-11499078 MsG0780036661.01.T01:CDS 55.0%
TAGACTAGGGAAGGAGGCTG+CGG + Chr7:11498518-11498537 MsG0780036661.01.T01:CDS 55.0%
TCCACTCTTGCCATGCTTCG+GGG + Chr7:11496880-11496899 MsG0780036661.01.T01:intron 55.0%
TGAGTGAGAGGCAGAGTGAG+AGG + Chr7:11497325-11497344 MsG0780036661.01.T01:intron 55.0%
TGCAAGGCAAGACATGGTGG+TGG + Chr7:11498485-11498504 MsG0780036661.01.T01:CDS 55.0%
TGGCCCCAGTGATACTCACT+TGG + Chr7:11498806-11498825 MsG0780036661.01.T01:CDS 55.0%
!! AACGGTTGTTTTGCGCAGCG+TGG + Chr7:11499348-11499367 MsG0780036661.01.T01:CDS 55.0%
!! AGGGTGTTTTGCAGGTGGCA+CGG + Chr7:11498695-11498714 MsG0780036661.01.T01:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG + Chr7:11498491-11498510 MsG0780036661.01.T01:CDS 55.0%
ATCGCACTGGGCTTAGCCGT+AGG - Chr7:11497103-11497122 None:intergenic 60.0%
CCACTCTTGCCATGCTTCGG+GGG + Chr7:11496881-11496900 MsG0780036661.01.T01:intron 60.0%
CGGGGTTCTTGGAACACCGT+GGG + Chr7:11495334-11495353 MsG0780036661.01.T01:intron 60.0%
CGTGTCAAGAGCGGGGTTCT+TGG + Chr7:11495323-11495342 MsG0780036661.01.T01:intron 60.0%
GCAGCCTCCTTCCCTAGTCT+AGG - Chr7:11498519-11498538 None:intergenic 60.0%
GGGGCCACGAAATGTGACAG+CGG - Chr7:11498793-11498812 None:intergenic 60.0%
GGTCGAGGCTTTCGAGCCAT+TGG + Chr7:11499058-11499077 MsG0780036661.01.T01:CDS 60.0%
TAGTGCCCCTGCACCTCCAT+GGG + Chr7:11494219-11494238 MsG0780036661.01.T01:intron 60.0%
TTGCAGGTGGCACGGTGCTT+CGG + Chr7:11498703-11498722 MsG0780036661.01.T01:CDS 60.0%
! ACTAGCCCATGGAGGTGCAG+GGG - Chr7:11494227-11494246 None:intergenic 60.0%
! CACTAGCCCATGGAGGTGCA+GGG - Chr7:11494228-11494247 None:intergenic 60.0%
!! CTGCACCTCCATGGGCTAGT+GGG + Chr7:11494227-11494246 MsG0780036661.01.T01:intron 60.0%
AGGGAAGGAGGCTGCGGTGA+AGG + Chr7:11498524-11498543 MsG0780036661.01.T01:CDS 65.0%
AGGTGGCACGGTGCTTCGGT+TGG + Chr7:11498707-11498726 MsG0780036661.01.T01:CDS 65.0%
CCCCCGAAGCATGGCAAGAG+TGG - Chr7:11496884-11496903 None:intergenic 65.0%
CTAGTGCCCCTGCACCTCCA+TGG + Chr7:11494218-11494237 MsG0780036661.01.T01:intron 65.0%
GCGGGGTTCTTGGAACACCG+TGG + Chr7:11495333-11495352 MsG0780036661.01.T01:intron 65.0%
GGCAATTGGCCCCCGAAGCA+TGG - Chr7:11496893-11496912 None:intergenic 65.0%
! CCACTAGCCCATGGAGGTGC+AGG - Chr7:11494229-11494248 None:intergenic 65.0%
!! CCTGCACCTCCATGGGCTAG+TGG + Chr7:11494226-11494245 MsG0780036661.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 11493770 11499668 11493770 ID=MsG0780036661.01;Name=MsG0780036661.01
Chr7 mRNA 11493770 11499668 11493770 ID=MsG0780036661.01.T01;Parent=MsG0780036661.01;Name=MsG0780036661.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.5|0.33|1|1|0.66|3|175|521
Chr7 exon 11493770 11494018 11493770 ID=MsG0780036661.01.T01:exon:1757;Parent=MsG0780036661.01.T01
Chr7 exon 11497809 11498019 11497809 ID=MsG0780036661.01.T01:exon:1758;Parent=MsG0780036661.01.T01
Chr7 exon 11498388 11499668 11498388 ID=MsG0780036661.01.T01:exon:1759;Parent=MsG0780036661.01.T01
Chr7 CDS 11493770 11494018 11493770 ID=MsG0780036661.01.T01:cds;Parent=MsG0780036661.01.T01
Chr7 CDS 11497809 11498019 11497809 ID=MsG0780036661.01.T01:cds;Parent=MsG0780036661.01.T01
Chr7 CDS 11498388 11499493 11498388 ID=MsG0780036661.01.T01:cds;Parent=MsG0780036661.01.T01
Chr7 three_prime_UTR 11499494 11499668 11499494 ID=MsG0780036661.01.T01:three_prime_utr;Parent=MsG0780036661.01.T01
Gene Sequence

>MsG0780036661.01.T01

GCGAAAAGGACTTCGGTTTTTGATGATCCAACAATGGAGATTCAAGAATTAACTAGTGTTATCAAGCAAGATATTACCGCTCTTAACTCTGCTGTTGTGGATCTTCAATTAATCAGTAATTCTAGAAATGAGAGTGGAAATGTTTCTATCGACACTACTAGTCATTCAACTATGGTTGTCGATGACCTAAAGACACGATTGATGAGCACTACCAAGGAATTCAAAGATGTTCTTACCATGCGAATTGAGTACTCCATTTTATTTGATACCAAAGATATCAAAATGGTGAGTGTGTCTGAAATTCGTAAAGCTCAAAGAGCAGAAGGTCCTGCAACTATCTTGGCCATTGGCACTGCAAATCCAGCAAATTGTGTTGAACAAAGCACTTATCCTGATTTTTACTTTAAAATCACAAACAGTGAACACAAAACTGAACTCAAAGAGAAATTTCAACGCATGTGTGATAAATCCATGATCAAGAGGAGATACATGTATCTAACAGAAGAGATTTTGAAAGAAAATCCTAATGTTTGTGAATTCATGGCACCTTCATTGGATGCAAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGGAAGGAGGCTGCGGTGAAGGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATCGTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCCGATTATCAACTCACCAAACTCTTAGGTCTTCGCCCATATGTGAAAAGGTACATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTGCTTCGGTTGGCCAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAAGTCACCGCTGTCACATTTCGTGGCCCCAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCACTCATTGTTGGTTCTGATCCAGTACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCTGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTACTAAAGCATTGGTCGAGGCTTTCGAGCCATTGGGAATTTCCGATTACAACTCAATCTTTTGGATTGCACATCCCGGTGGACCTGCAATTCTAGATCAAGTGGAGCAAAAGTTAGCCTTAAAGCCTGAAAAGATGAATGCAACTAGAGAAGTGCTTAGTGAATATGGAAATATGTCAAGTGCATGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAATCAACTAAAGACGGATTGAAGACAACGGGAGAAGGACTTGAATGGGTGTATTATTTGGTTTTGGACCAGGACTTACCATTGAAACGGTTGTTTTGCGCAGCGTGGCTATATGAGATGCTTATTTATTTTTGTGTATCGATTTCAAATTTGTTGAATTTTTTTGAAAGGATGGAATTTCATCTAATGTTCAACTTGTACCGTCCTATTAAAATAATACAATTGTGTTAG

Protein sequence

>MsG0780036661.01.T01

AKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSIDTTSHSTMVVDDLKTRLMSTTKEFKDVLTMRIEYSILFDTKDIKMVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEFMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTKDGLKTTGEGLEWVYYLVLDQDLPLKRLFCAAWLYEMLIYFCVSISNLLNFFERMEFHLMFNLYRPIKIIQLC*