AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015178.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015178.01.T01 MTR_3g064420 97.938 582 11 1 1 581 1 582 0.0 1186
MsG0380015178.01.T01 MTR_8g074040 50.450 555 259 4 1 553 43 583 0.0 599
MsG0380015178.01.T01 MTR_5g076240 53.286 563 233 8 1 551 1 545 0.0 588
MsG0380015178.01.T01 MTR_5g008800 50.271 553 261 3 1 553 1 539 0.0 588
MsG0380015178.01.T01 MTR_4g121600 51.792 558 254 8 1 551 7 556 0.0 577
MsG0380015178.01.T01 MTR_2g044180 51.075 558 258 7 1 551 7 556 0.0 572
MsG0380015178.01.T01 MTR_5g076220 52.151 558 248 8 1 551 1 546 0.0 555
MsG0380015178.01.T01 MTR_5g008820 47.473 554 269 5 1 551 1 535 0.0 550
MsG0380015178.01.T01 MTR_5g076200 50.538 558 257 7 1 551 1 546 0.0 542
MsG0380015178.01.T01 MTR_0161s0050 49.113 564 258 6 1 551 1 548 0.0 530
MsG0380015178.01.T01 MTR_8g074040 51.148 479 218 4 77 553 1 465 0.0 525
MsG0380015178.01.T01 MTR_8g074120 49.693 489 230 4 67 553 20 494 4.94e-177 511
MsG0380015178.01.T01 MTR_2g044180 50.529 473 219 7 86 551 1 465 5.51e-164 476
MsG0380015178.01.T01 MTR_5g023730 41.547 556 300 11 3 551 4 541 4.71e-141 420
MsG0380015178.01.T01 MTR_0803s0020 31.099 537 335 10 14 546 235 740 1.25e-63 226
MsG0380015178.01.T01 MTR_2g105570 29.020 541 335 16 25 549 37 544 2.82e-49 179
MsG0380015178.01.T01 MTR_4g057730 26.460 548 360 12 14 552 27 540 1.48e-45 169
MsG0380015178.01.T01 MTR_5g007640 28.205 546 342 15 18 549 73 582 1.27e-44 167
MsG0380015178.01.T01 MTR_2g095510 27.978 554 341 16 14 552 27 537 2.04e-43 163
MsG0380015178.01.T01 MTR_8g039720 26.226 530 331 13 37 546 62 551 2.05e-42 160
MsG0380015178.01.T01 MTR_3g035130 28.442 552 339 14 15 554 5 512 2.06e-41 157
MsG0380015178.01.T01 MTR_1g026310 26.577 523 336 12 37 546 65 552 2.47e-41 157
MsG0380015178.01.T01 MTR_3g460770 26.486 555 333 17 19 549 33 536 2.63e-40 154
MsG0380015178.01.T01 MTR_4g077900 27.237 514 313 13 52 547 1 471 7.03e-40 152
MsG0380015178.01.T01 MTR_1g063110 26.825 548 351 16 14 546 28 540 3.39e-39 151
MsG0380015178.01.T01 MTR_4g005750 28.312 551 334 17 25 556 36 544 4.36e-39 150
MsG0380015178.01.T01 MTR_4g128337 26.354 554 341 16 18 549 35 543 9.52e-38 147
MsG0380015178.01.T01 MTR_1569s0010 32.249 369 213 11 192 548 186 529 2.29e-37 145
MsG0380015178.01.T01 MTR_5g027500 26.602 515 331 13 49 547 78 561 9.71e-37 144
MsG0380015178.01.T01 MTR_1g063120 26.259 556 348 16 14 546 28 544 1.38e-36 144
MsG0380015178.01.T01 MTR_5g027480 26.742 531 324 17 36 547 64 548 1.20e-34 138
MsG0380015178.01.T01 MTR_1g090737 25.849 530 334 16 43 556 82 568 8.81e-34 135
MsG0380015178.01.T01 MTR_4g057730 25.636 472 313 12 14 475 27 470 1.52e-33 134
MsG0380015178.01.T01 MTR_3g035130 27.812 489 309 11 15 492 5 460 2.01e-32 130
MsG0380015178.01.T01 MTR_3g088880 27.989 368 223 8 194 546 208 548 6.65e-32 130
MsG0380015178.01.T01 MTR_3g088870 27.945 365 230 7 194 546 207 550 9.28e-32 130
MsG0380015178.01.T01 MTR_1g073180 24.470 519 335 9 39 549 60 529 1.10e-31 129
MsG0380015178.01.T01 MTR_2g030240 24.954 541 347 16 39 547 27 540 5.26e-31 127
MsG0380015178.01.T01 MTR_4g011790 27.226 393 245 11 179 547 217 592 5.91e-30 125
MsG0380015178.01.T01 MTR_4g011790 27.157 394 246 11 179 548 217 593 8.83e-30 124
MsG0380015178.01.T01 MTR_1054s0020 26.022 538 336 18 27 551 281 769 1.01e-29 125
MsG0380015178.01.T01 MTR_4g013210 27.551 392 228 14 189 547 71 439 1.06e-28 119
MsG0380015178.01.T01 MTR_2g030240 27.273 396 255 13 180 550 62 449 1.59e-28 119
MsG0380015178.01.T01 MTR_4g011790 26.185 401 248 10 179 547 217 601 3.92e-28 119
MsG0380015178.01.T01 MTR_4g057730 24.615 455 305 12 14 458 27 453 3.71e-27 115
MsG0380015178.01.T01 MTR_1g073180 23.770 488 315 9 39 518 82 520 5.61e-26 112
MsG0380015178.01.T01 MTR_1586s0010 25.806 372 247 12 39 400 69 421 2.20e-25 109
MsG0380015178.01.T01 MTR_2g095510 27.171 449 276 15 14 447 27 439 7.35e-25 108
MsG0380015178.01.T01 MTR_4g013210 26.842 380 205 15 189 547 71 398 1.19e-24 107
MsG0380015178.01.T01 MTR_4g013210 26.596 376 211 15 189 547 223 550 6.18e-24 106
MsG0380015178.01.T01 MTR_4g013210 27.446 368 211 14 189 523 223 567 3.37e-22 100
MsG0380015178.01.T01 MTR_7g084850 23.845 541 359 18 40 550 203 720 5.36e-20 94.7
MsG0380015178.01.T01 MTR_1g086600 24.593 492 283 19 41 469 100 566 9.07e-20 94.0
MsG0380015178.01.T01 MTR_8g099420 23.838 495 267 21 41 462 81 538 3.90e-17 85.5
MsG0380015178.01.T01 MTR_1g026470 27.070 314 203 8 37 339 65 363 7.51e-17 83.6
MsG0380015178.01.T01 MTR_1g026430 26.752 314 204 8 37 339 65 363 1.09e-16 82.8
MsG0380015178.01.T01 MTR_3g087980 25.408 429 218 16 141 484 197 608 1.83e-15 80.1
MsG0380015178.01.T01 MTR_7g109830 29.439 214 137 6 259 469 340 542 2.84e-13 73.2
MsG0380015178.01.T01 MTR_5g009350 21.538 520 297 18 41 488 80 560 4.24e-13 72.4
MsG0380015178.01.T01 MTR_5g009350 21.497 521 292 18 41 480 80 564 5.21e-13 72.4
MsG0380015178.01.T01 MTR_5g009350 21.497 521 292 18 41 480 80 564 5.36e-13 72.4
MsG0380015178.01.T01 MTR_5g009350 21.457 508 291 17 41 476 80 551 8.20e-13 71.6
MsG0380015178.01.T01 MTR_1g034360 20.492 488 307 14 40 469 79 543 2.24e-12 70.5
MsG0380015178.01.T01 MTR_1g030290 32.948 173 94 6 306 469 424 583 1.04e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015178.01.T01 AT1G65890 60.549 583 217 5 1 575 1 578 0.0 715
MsG0380015178.01.T01 AT1G65880 61.754 570 201 5 1 560 1 563 0.0 715
MsG0380015178.01.T01 AT1G66120 59.036 581 223 4 1 575 1 572 0.0 703
MsG0380015178.01.T01 AT1G68270 53.509 570 217 7 1 560 1 532 0.0 584
MsG0380015178.01.T01 AT1G20560 50.265 567 264 4 1 563 3 555 0.0 581
MsG0380015178.01.T01 AT3G16910 52.330 558 252 8 1 551 9 559 0.0 566
MsG0380015178.01.T01 AT5G16340 48.925 558 262 6 1 551 1 542 0.0 558
MsG0380015178.01.T01 AT1G21530 50.364 550 258 7 9 553 9 548 0.0 555
MsG0380015178.01.T01 AT2G17650 49.286 560 264 4 1 550 48 597 0.0 553
MsG0380015178.01.T01 AT5G16370 48.387 558 265 5 1 551 1 542 0.0 553
MsG0380015178.01.T01 AT1G21530 50.364 550 256 8 9 553 9 546 0.0 548
MsG0380015178.01.T01 AT1G21540 49.458 554 258 8 9 553 9 549 0.0 540
MsG0380015178.01.T01 AT1G75960 48.474 557 266 5 1 551 1 542 0.0 532
MsG0380015178.01.T01 AT1G77240 46.964 560 274 8 1 553 1 544 0.0 528
MsG0380015178.01.T01 AT1G20560 50.102 491 227 4 77 563 1 477 3.79e-172 497
MsG0380015178.01.T01 AT1G76290 45.144 556 279 8 1 551 1 535 4.69e-155 456
MsG0380015178.01.T01 AT3G21240 29.063 523 327 13 37 549 61 549 1.74e-49 180
MsG0380015178.01.T01 AT4G05160 27.076 554 345 14 17 552 30 542 4.24e-45 168
MsG0380015178.01.T01 AT1G20510 27.687 549 329 20 18 546 36 536 8.91e-45 167
MsG0380015178.01.T01 AT1G51680 29.197 548 337 16 19 549 43 556 1.88e-44 166
MsG0380015178.01.T01 AT1G20500 25.046 543 351 14 18 546 42 542 5.51e-43 162
MsG0380015178.01.T01 AT1G20480 27.481 524 328 16 37 546 72 557 1.79e-42 161
MsG0380015178.01.T01 AT4G19010 26.642 533 336 15 31 547 62 555 1.81e-42 161
MsG0380015178.01.T01 AT3G21230 28.843 527 327 12 37 549 71 563 5.22e-42 159
MsG0380015178.01.T01 AT1G65060 27.920 548 339 18 18 549 52 559 5.82e-41 156
MsG0380015178.01.T01 AT5G63380 26.190 546 326 16 17 546 66 550 1.11e-40 155
MsG0380015178.01.T01 AT3G48990 27.969 522 309 14 40 543 31 503 2.02e-38 148
MsG0380015178.01.T01 AT5G38120 26.972 545 337 17 18 546 43 542 2.67e-38 149
MsG0380015178.01.T01 AT1G51680 28.627 517 318 16 19 518 43 525 4.09e-38 148
MsG0380015178.01.T01 AT3G21240 28.667 450 284 12 37 476 61 483 1.33e-37 145
MsG0380015178.01.T01 AT3G21240 28.667 450 284 12 37 476 61 483 1.33e-37 145
MsG0380015178.01.T01 AT1G20510 28.033 478 283 18 18 475 36 472 1.12e-36 143
MsG0380015178.01.T01 AT5G38120 26.886 517 317 17 18 518 43 514 1.40e-33 134
MsG0380015178.01.T01 AT1G30520 25.090 554 373 14 20 549 13 548 3.50e-33 134
MsG0380015178.01.T01 AT1G30520 25.090 554 373 14 20 549 13 548 3.50e-33 134
MsG0380015178.01.T01 AT1G51680 28.632 475 295 15 19 476 43 490 2.16e-32 130
MsG0380015178.01.T01 AT1G62940 26.250 560 339 16 14 549 26 535 2.33e-32 131
MsG0380015178.01.T01 AT3G21230 27.621 496 311 12 37 518 71 532 3.22e-32 131
MsG0380015178.01.T01 AT1G20510 27.778 450 264 18 18 447 36 444 2.39e-30 124
MsG0380015178.01.T01 AT5G38120 26.160 474 296 13 18 475 43 478 3.64e-29 121
MsG0380015178.01.T01 AT5G38120 26.160 474 296 13 18 475 43 478 3.64e-29 121
MsG0380015178.01.T01 AT3G21230 27.533 454 288 11 37 476 71 497 3.50e-27 115
MsG0380015178.01.T01 AT1G65060 27.578 446 274 17 18 447 52 464 4.38e-27 115
MsG0380015178.01.T01 AT3G16170 25.065 387 241 11 189 547 236 601 1.64e-24 108
MsG0380015178.01.T01 AT1G20490 25.971 412 262 15 37 436 61 441 2.84e-23 103
MsG0380015178.01.T01 AT1G20490 25.971 412 262 15 37 436 61 441 2.84e-23 103
MsG0380015178.01.T01 AT1G30520 23.881 469 319 12 20 471 13 460 3.50e-21 97.4
MsG0380015178.01.T01 AT1G30520 23.881 469 319 12 20 471 13 460 3.50e-21 97.4
MsG0380015178.01.T01 AT1G64400 24.903 514 286 22 28 472 65 547 8.87e-21 97.1
MsG0380015178.01.T01 AT4G23850 24.324 518 281 20 41 480 81 565 4.17e-19 91.7
MsG0380015178.01.T01 AT5G36880 24.074 594 383 20 25 579 177 741 2.22e-18 89.7
MsG0380015178.01.T01 AT5G36880 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
MsG0380015178.01.T01 AT5G36880 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
MsG0380015178.01.T01 AT5G36880 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
MsG0380015178.01.T01 AT5G36880 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
MsG0380015178.01.T01 AT4G14070 21.658 591 321 23 20 501 102 659 8.39e-13 72.0
MsG0380015178.01.T01 AT4G11030 31.313 198 108 10 281 472 372 547 2.32e-12 70.5
MsG0380015178.01.T01 AT1G77590 32.558 172 96 6 306 469 274 433 1.36e-11 67.8
MsG0380015178.01.T01 AT1G77590 32.558 172 96 6 306 469 420 579 1.79e-11 67.4
MsG0380015178.01.T01 AT2G04350 30.418 263 138 13 306 551 449 683 2.95e-11 67.0
MsG0380015178.01.T01 AT2G04350 30.418 263 138 13 306 551 449 683 2.95e-11 67.0

Find 150 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAATTTACCACACTTTA+TGG 0.126746 3:-66285849 MsG0380015178.01.T01:CDS
TCTAAAGATGTGATTATTTC+AGG 0.185792 3:-66286067 MsG0380015178.01.T01:CDS
CAAGGACTTTCACCCCATTT+TGG 0.195490 3:+66285956 None:intergenic
TGTCACATTATAGAGATTTA+TGG 0.205886 3:+66286585 None:intergenic
TATACATAAAGATGGTTATT+TGG 0.207931 3:-66286104 MsG0380015178.01.T01:CDS
ATTTCTTCAGGAAGGTAATT+TGG 0.214710 3:+66286868 None:intergenic
ATCTTACCTGTTAAAGTCTT+TGG 0.233560 3:+66285794 None:intergenic
TTATGATTGACTTGATTATT+AGG 0.237452 3:+66285704 None:intergenic
GCTCTCATCAAGAAAGTTAA+AGG 0.239728 3:+66287727 None:intergenic
AAGCGACGGCGAAAGCTTTC+GGG 0.254708 3:-66286159 MsG0380015178.01.T01:CDS
AAATGACTCAAATTAAATTA+TGG 0.260323 3:+66285400 None:intergenic
GTATAGTTTGCTCCACATTT+TGG 0.280265 3:+66287760 None:intergenic
TTTAATGTAACACATGCTTA+TGG 0.280910 3:-66286418 MsG0380015178.01.T01:CDS
GATTTACCAAAGACTTTAAC+AGG 0.288395 3:-66285800 MsG0380015178.01.T01:CDS
TTGCAATGCCACATCCAAAA+TGG 0.295462 3:-66285970 MsG0380015178.01.T01:CDS
AATAAAACAGGTATCAGTTT+TGG 0.306205 3:-66287205 MsG0380015178.01.T01:intron
TGACTATAAACAACACCTTT+TGG 0.314032 3:+66286790 None:intergenic
GAAAGTTAAAGGAGTGAGTA+TGG 0.331539 3:+66287738 None:intergenic
CATTCATCTTGAATTTCTTC+AGG 0.339619 3:+66286856 None:intergenic
GAAGCGACGGCGAAAGCTTT+CGG 0.344503 3:-66286160 MsG0380015178.01.T01:CDS
TTTAATCCTTGGTTGGGAAA+TGG 0.345052 3:-66286740 MsG0380015178.01.T01:CDS
TTCTTCCATGAGTAATCTTA+AGG 0.361126 3:+66287011 None:intergenic
TCATAATAATGACCAGCTTA+TGG 0.364109 3:-66285687 MsG0380015178.01.T01:CDS
GGTAATGTCCATAGATAAAC+TGG 0.364652 3:+66286709 None:intergenic
GTTAGTTGTTTCCACTTAGT+AGG 0.368641 3:-66285446 MsG0380015178.01.T01:three_prime_UTR
CGCATTGAGACGGTGGTTGA+TGG 0.387285 3:+66287116 None:intergenic
TCATACATTGCTGGAATGTT+TGG 0.387598 3:+66287180 None:intergenic
TAAAATAATATTGAAAATGA+TGG 0.388005 3:+66286546 None:intergenic
AAGTGAAACGGGTTCCTTCA+TGG 0.397922 3:+66287671 None:intergenic
TACCACAAAACACTTAGCTT+TGG 0.397967 3:+66285751 None:intergenic
TGGTAAATTCTTCCTACAAT+AGG 0.411253 3:+66285859 None:intergenic
TATGGACTAACTGAAGCAAC+AGG 0.418017 3:-66286400 MsG0380015178.01.T01:CDS
GTAAGAGATGGGAAAACAAT+GGG 0.423096 3:-66286235 MsG0380015178.01.T01:CDS
GATGTGTAATTCAATGTAAT+TGG 0.423792 3:+66286829 None:intergenic
TTTGAGTTTAATCCTTGGTT+GGG 0.424831 3:-66286746 MsG0380015178.01.T01:CDS
TTAATCCTTGGTTGGGAAAT+GGG 0.425386 3:-66286739 MsG0380015178.01.T01:CDS
TTTGTGAGTGGCAGAAGAAA+TGG 0.427336 3:-66286366 MsG0380015178.01.T01:CDS
TTACCTATGTTCCATTGTAA+TGG 0.427373 3:-66286691 MsG0380015178.01.T01:CDS
GAGCTCGCCTAGCCGGATTC+CGG 0.428306 3:+66286921 None:intergenic
TCTCCGGTGAATATACTAAC+TGG 0.428686 3:-66286490 MsG0380015178.01.T01:CDS
CTTCATGGATGACTGAGGTT+CGG 0.429624 3:+66287686 None:intergenic
AAATGCATCTCATACATTGC+TGG 0.433221 3:+66287171 None:intergenic
GTTATTTGGAAATTAAAGAT+AGG 0.433555 3:-66286090 MsG0380015178.01.T01:CDS
GACGGTGGTTGATGGTGTTT+AGG 0.435440 3:+66287124 None:intergenic
TGCAATGCCACATCCAAAAT+GGG 0.443909 3:-66285969 MsG0380015178.01.T01:CDS
GTAGTGAACCAGTTTATCTA+TGG 0.450766 3:-66286717 MsG0380015178.01.T01:CDS
GGGGATGGTTGGTTTAGAAC+TGG 0.460142 3:-66286139 MsG0380015178.01.T01:CDS
ACACTTTATGGTACCTAAGA+TGG 0.462947 3:-66285837 MsG0380015178.01.T01:CDS
GAGATTATGTTGAAGGGAAG+TGG 0.465461 3:-66286211 MsG0380015178.01.T01:CDS
AGTTTGTGACCAAGTGAAAC+GGG 0.471117 3:+66287660 None:intergenic
CTGAAGAAATTCAAGATGAA+TGG 0.471358 3:-66286855 MsG0380015178.01.T01:CDS
ATGGAGAGTGTGGTAAGAGA+TGG 0.472523 3:-66286247 MsG0380015178.01.T01:CDS
GAAACAACTAACAAGAAAGT+TGG 0.473458 3:+66285457 None:intergenic
TAAACACTCCCACCGGAATC+CGG 0.473541 3:-66286933 MsG0380015178.01.T01:CDS
CTATGTTCCATTGTAATGGT+TGG 0.477230 3:-66286687 MsG0380015178.01.T01:CDS
CTTTGAGTTTAATCCTTGGT+TGG 0.482972 3:-66286747 MsG0380015178.01.T01:CDS
CGAAAGCTTTCGGGGATGGT+TGG 0.487803 3:-66286150 MsG0380015178.01.T01:CDS
CGCCTCAGAGTGTCGAAGAA+TGG 0.487931 3:+66287080 None:intergenic
AAGTTTGTGACCAAGTGAAA+CGG 0.494196 3:+66287659 None:intergenic
ACGGCGAAAGCTTTCGGGGA+TGG 0.495228 3:-66286154 MsG0380015178.01.T01:CDS
TTCACACTTCAACAATTTGA+GGG 0.495504 3:-66285567 MsG0380015178.01.T01:three_prime_UTR
TGCCACTCACAAACAAGTGC+TGG 0.499001 3:+66286376 None:intergenic
TGGTTTAGAACTGGTGATGT+TGG 0.499794 3:-66286130 MsG0380015178.01.T01:CDS
ATGAGATAATTACCTATTGT+AGG 0.504104 3:-66285871 MsG0380015178.01.T01:CDS
TGGAGAGTGTGGTAAGAGAT+GGG 0.505965 3:-66286246 MsG0380015178.01.T01:CDS
ATTCGTATCAAAAGCAAAAG+AGG 0.506420 3:-66287034 MsG0380015178.01.T01:CDS
AAGGGAAGTGGAATCATGAT+GGG 0.506638 3:-66286199 MsG0380015178.01.T01:CDS
GTTCACACTTCAACAATTTG+AGG 0.509906 3:-66285568 MsG0380015178.01.T01:three_prime_UTR
ACAGCAGCTTCTAAAACCTT+AGG 0.514521 3:+66285995 None:intergenic
TGCAATATTGAGAGCACGGA+GGG 0.514867 3:+66287609 None:intergenic
CATCTTGAATTTCTTCAGGA+AGG 0.517226 3:+66286860 None:intergenic
AGGAAGCGAGGCGGCGACAC+CGG 0.518047 3:+66287632 None:intergenic
AGAGGCCTTAAGATTACTCA+TGG 0.518068 3:-66287016 MsG0380015178.01.T01:CDS
CGTATTCGAGCTCGCCTAGC+CGG 0.519450 3:+66286914 None:intergenic
CTTGAGAAAATCGAGCCACT+TGG 0.519790 3:-66286442 MsG0380015178.01.T01:CDS
ATGAAGGAACCCGTTTCACT+TGG 0.520277 3:-66287669 MsG0380015178.01.T01:CDS
ATCTGCTTCAGCTTGTTATG+TGG 0.520395 3:-66285517 MsG0380015178.01.T01:three_prime_UTR
AGTACTTTGAGTTTAATCCT+TGG 0.521867 3:-66286751 MsG0380015178.01.T01:CDS
CTCGCCTAGCCGGATTCCGG+TGG 0.524552 3:+66286924 None:intergenic
ATTACATTGAATTACACATC+AGG 0.525480 3:-66286826 MsG0380015178.01.T01:CDS
CGAGCTCGAATACGAGCAAA+TGG 0.527362 3:-66286905 MsG0380015178.01.T01:CDS
TGTTCTTTATAGTCATCCTA+AGG 0.533616 3:-66286011 MsG0380015178.01.T01:CDS
CGATGCTTAAAGCGCGACAA+GGG 0.533885 3:-66286318 MsG0380015178.01.T01:CDS
AACTGGTGGAGCACCACCCC+CGG 0.535495 3:-66286473 MsG0380015178.01.T01:CDS
TGTGACACTAAGGAAGAATG+AGG 0.538924 3:-66285927 MsG0380015178.01.T01:CDS
GAAGGGAAGTGGAATCATGA+TGG 0.539328 3:-66286200 MsG0380015178.01.T01:CDS
AAAATAATATTGAAAATGAT+GGG 0.545393 3:+66286547 None:intergenic
GTTGGTGTTATACATAAAGA+TGG 0.545404 3:-66286112 MsG0380015178.01.T01:CDS
AAAGAGAGTCATAAAATCTC+CGG 0.548039 3:-66286506 MsG0380015178.01.T01:CDS
GACGAGATAGAGCCATAAGC+TGG 0.550059 3:+66285675 None:intergenic
TCGAAGAATGGTGGCTATGT+TGG 0.554863 3:+66287092 None:intergenic
CAACCATTACAATGGAACAT+AGG 0.559310 3:+66286688 None:intergenic
CACTACCCATTTCCCAACCA+AGG 0.560736 3:+66286734 None:intergenic
CACGGAGGGAGGAAGCGAGG+CGG 0.564152 3:+66287623 None:intergenic
GGTACAACTTCAGAACCAAA+AGG 0.565976 3:-66286805 MsG0380015178.01.T01:CDS
TCTTTGCAATATTGAGAGCA+CGG 0.566149 3:+66287605 None:intergenic
TACGAGCAAATGGTTCATCA+TGG 0.574224 3:-66286895 MsG0380015178.01.T01:CDS
GTAATGGTTGGACATTCACT+TGG 0.575202 3:-66286675 MsG0380015178.01.T01:CDS
CTTGGTCACAAACTTATGAC+CGG 0.576665 3:-66287651 MsG0380015178.01.T01:CDS
CATCTATCACAATCACTAGT+GGG 0.580127 3:+66286959 None:intergenic
GATGGTGTTTAGGACAGCAC+CGG 0.583797 3:+66287134 None:intergenic
TAATGGTTGGACATTCACTT+GGG 0.583819 3:-66286674 MsG0380015178.01.T01:CDS
GTAACTACAACTAATTCCAA+TGG 0.584509 3:-66287791 MsG0380015178.01.T01:exon
TTTAGGACAGCACCGGCCAT+AGG 0.587665 3:+66287141 None:intergenic
GAGCACGGAGGGAGGAAGCG+AGG 0.588763 3:+66287620 None:intergenic
GTTGTAGTTACCTAAGTGAG+AGG 0.592569 3:+66287803 None:intergenic
TCTTGAAACAATGGAGAGTG+TGG 0.595422 3:-66286257 MsG0380015178.01.T01:CDS
GGCCAGCACTTGTTTGTGAG+TGG 0.595693 3:-66286378 MsG0380015178.01.T01:CDS
GGTGTTGTTTATAGTCATAG+AGG 0.595730 3:-66286784 MsG0380015178.01.T01:CDS
TCATCTATCACAATCACTAG+TGG 0.596057 3:+66286958 None:intergenic
TGTGAAGAATCTTGAAACAA+TGG 0.596126 3:-66286266 MsG0380015178.01.T01:CDS
AAATTATGGAAGATATAACT+AGG 0.597180 3:+66285414 None:intergenic
ACTCCCACCGGAATCCGGCT+AGG 0.597247 3:-66286928 MsG0380015178.01.T01:CDS
AGCGACGGCGAAAGCTTTCG+GGG 0.597981 3:-66286158 MsG0380015178.01.T01:CDS
CGAACCTCAGTCATCCATGA+AGG 0.598539 3:-66287685 MsG0380015178.01.T01:CDS
AAGAGATGGGAAAACAATGG+GGG 0.600740 3:-66286233 MsG0380015178.01.T01:CDS
TTTCTCAAGTAGGGACGCCG+GGG 0.601501 3:+66286456 None:intergenic
CTATGTTGGCCGCATTGAGA+CGG 0.602111 3:+66287106 None:intergenic
GGACTGCTCAACCTACTAAG+TGG 0.602551 3:+66285435 None:intergenic
TCGATGCTTAAAGCGCGACA+AGG 0.604868 3:-66286319 MsG0380015178.01.T01:CDS
CCACCAGTTAGTATATTCAC+CGG 0.607871 3:+66286487 None:intergenic
CTCAGAGTGTCGAAGAATGG+TGG 0.608683 3:+66287083 None:intergenic
TTGTAGTTACCTAAGTGAGA+GGG 0.608900 3:+66287804 None:intergenic
TGAATGTCCAACCATTACAA+TGG 0.613092 3:+66286680 None:intergenic
GGTAAGAGATGGGAAAACAA+TGG 0.619269 3:-66286236 MsG0380015178.01.T01:CDS
ACTTGGGGTGTAGCTGCAAG+AGG 0.619778 3:-66286658 MsG0380015178.01.T01:CDS
TAAGAGATGGGAAAACAATG+GGG 0.626561 3:-66286234 MsG0380015178.01.T01:CDS
GATGCTTAAAGCGCGACAAG+GGG 0.626984 3:-66286317 MsG0380015178.01.T01:CDS
TCGCCTAGCCGGATTCCGGT+GGG 0.628633 3:+66286925 None:intergenic
ATGGATAACCTACCAAAATG+TGG 0.629287 3:-66287772 MsG0380015178.01.T01:CDS
AATATTGAGAGCACGGAGGG+AGG 0.632194 3:+66287612 None:intergenic
GATGACATAAACACTCCCAC+CGG 0.634917 3:-66286940 MsG0380015178.01.T01:CDS
CTTAGTGTCACAAAAGCACA+AGG 0.636960 3:+66285938 None:intergenic
TTCTCAAGTAGGGACGCCGG+GGG 0.637975 3:+66286457 None:intergenic
TGTTGGCCGCATTGAGACGG+TGG 0.638475 3:+66287109 None:intergenic
CACCATTCTTCGACACTCTG+AGG 0.640216 3:-66287082 MsG0380015178.01.T01:CDS
TGTGTTACATTAAAACCAAG+TGG 0.640733 3:+66286427 None:intergenic
AATGGTTGGACATTCACTTG+GGG 0.644019 3:-66286673 MsG0380015178.01.T01:CDS
CCGGTGAATATACTAACTGG+TGG 0.647354 3:-66286487 MsG0380015178.01.T01:CDS
AAAGATGTGATTATTTCAGG+AGG 0.649768 3:-66286064 MsG0380015178.01.T01:CDS
TGATTCTTGTTGTGTTACTG+AGG 0.660637 3:-66285894 MsG0380015178.01.T01:CDS
ATCTTAGGTACCATAAAGTG+TGG 0.661614 3:+66285839 None:intergenic
AGGGAAGTGGAATCATGATG+GGG 0.670807 3:-66286198 MsG0380015178.01.T01:CDS
GACACTAAGGAAGAATGAGG+AGG 0.677688 3:-66285924 MsG0380015178.01.T01:CDS
TGGGGTGTAGCTGCAAGAGG+AGG 0.680125 3:-66286655 MsG0380015178.01.T01:CDS
GGTTCCTTCATGGATGACTG+AGG 0.686748 3:+66287681 None:intergenic
GCAATGCCACATCCAAAATG+GGG 0.688593 3:-66285968 MsG0380015178.01.T01:CDS
ATGGACTAACTGAAGCAACA+GGG 0.714883 3:-66286399 MsG0380015178.01.T01:CDS
TTGCAATATTGAGAGCACGG+AGG 0.733139 3:+66287608 None:intergenic
CATCAACCACCGTCTCAATG+CGG 0.733801 3:-66287115 MsG0380015178.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATTGAAAATGAT+GGG + Chr3:66286670-66286689 None:intergenic 10.0%
!! TAAAATAATATTGAAAATGA+TGG + Chr3:66286671-66286690 None:intergenic 10.0%
!!! ATCATTTTCAATATTATTTT+AGG - Chr3:66286670-66286689 MsG0380015178.01.T01:CDS 10.0%
!! AAAAAGTTCTTTATATATTG+TGG + Chr3:66287732-66287751 None:intergenic 15.0%
!! AAATGACTCAAATTAAATTA+TGG + Chr3:66287817-66287836 None:intergenic 15.0%
!! TATTACAATATTTGATATTG+CGG + Chr3:66285896-66285915 None:intergenic 15.0%
!! AAATTATGGAAGATATAACT+AGG + Chr3:66287803-66287822 None:intergenic 20.0%
!! GCGATTTATAAAAACTAAAT+TGG - Chr3:66285977-66285996 MsG0380015178.01.T01:CDS 20.0%
!! GTTATTTGGAAATTAAAGAT+AGG - Chr3:66287124-66287143 MsG0380015178.01.T01:CDS 20.0%
!! TATACATAAAGATGGTTATT+TGG - Chr3:66287110-66287129 MsG0380015178.01.T01:CDS 20.0%
!!! TGGTTTTTGTTTAATAAAAC+AGG - Chr3:66285997-66286016 MsG0380015178.01.T01:CDS 20.0%
!!! TTATGATTGACTTGATTATT+AGG + Chr3:66287513-66287532 None:intergenic 20.0%
! ATGAGATAATTACCTATTGT+AGG - Chr3:66287343-66287362 MsG0380015178.01.T01:intron 25.0%
! ATTACATTGAATTACACATC+AGG - Chr3:66286388-66286407 MsG0380015178.01.T01:CDS 25.0%
! CAAAATGCAGTATCAAATAT+TGG + Chr3:66285872-66285891 None:intergenic 25.0%
! GATGTGTAATTCAATGTAAT+TGG + Chr3:66286388-66286407 None:intergenic 25.0%
! TCTAAAGATGTGATTATTTC+AGG - Chr3:66287147-66287166 MsG0380015178.01.T01:CDS 25.0%
! TGTCACATTATAGAGATTTA+TGG + Chr3:66286632-66286651 None:intergenic 25.0%
! TTTAATGTAACACATGCTTA+TGG - Chr3:66286796-66286815 MsG0380015178.01.T01:CDS 25.0%
!! AATAAAACAGGTATCAGTTT+TGG - Chr3:66286009-66286028 MsG0380015178.01.T01:CDS 25.0%
!!! TTTTAAAGATAAAGAAGCGA+CGG - Chr3:66287041-66287060 MsG0380015178.01.T01:CDS 25.0%
AAAGAGAGTCATAAAATCTC+CGG - Chr3:66286708-66286727 MsG0380015178.01.T01:CDS 30.0%
AAAGATGTGATTATTTCAGG+AGG - Chr3:66287150-66287169 MsG0380015178.01.T01:CDS 30.0%
ATCTTACCTGTTAAAGTCTT+TGG + Chr3:66287423-66287442 None:intergenic 30.0%
ATTCGTATCAAAAGCAAAAG+AGG - Chr3:66286180-66286199 MsG0380015178.01.T01:CDS 30.0%
ATTTCTTCAGGAAGGTAATT+TGG + Chr3:66286349-66286368 None:intergenic 30.0%
CATTCATCTTGAATTTCTTC+AGG + Chr3:66286361-66286380 None:intergenic 30.0%
CTGAAGAAATTCAAGATGAA+TGG - Chr3:66286359-66286378 MsG0380015178.01.T01:CDS 30.0%
GAAACAACTAACAAGAAAGT+TGG + Chr3:66287760-66287779 None:intergenic 30.0%
GAAGAATTTACCACACTTTA+TGG - Chr3:66287365-66287384 MsG0380015178.01.T01:intron 30.0%
GATTTACCAAAGACTTTAAC+AGG - Chr3:66287414-66287433 MsG0380015178.01.T01:intron 30.0%
GTAACTACAACTAATTCCAA+TGG - Chr3:66285423-66285442 MsG0380015178.01.T01:three_prime_UTR 30.0%
TCATAATAATGACCAGCTTA+TGG - Chr3:66287527-66287546 MsG0380015178.01.T01:intron 30.0%
TCCATAAAAACAACCATCTT+AGG + Chr3:66287393-66287412 None:intergenic 30.0%
TGATATCATATCCTAGATTG+CGG + Chr3:66285834-66285853 None:intergenic 30.0%
TGGTAAATTCTTCCTACAAT+AGG + Chr3:66287358-66287377 None:intergenic 30.0%
TGTGAAGAATCTTGAAACAA+TGG - Chr3:66286948-66286967 MsG0380015178.01.T01:CDS 30.0%
TGTGTTACATTAAAACCAAG+TGG + Chr3:66286790-66286809 None:intergenic 30.0%
TGTTCTTTATAGTCATCCTA+AGG - Chr3:66287203-66287222 MsG0380015178.01.T01:intron 30.0%
TTACCTATGTTCCATTGTAA+TGG - Chr3:66286523-66286542 MsG0380015178.01.T01:CDS 30.0%
TTCACACTTCAACAATTTGA+GGG - Chr3:66287647-66287666 MsG0380015178.01.T01:CDS 30.0%
TTCTTCCATGAGTAATCTTA+AGG + Chr3:66286206-66286225 None:intergenic 30.0%
! AGTACTTTGAGTTTAATCCT+TGG - Chr3:66286463-66286482 MsG0380015178.01.T01:CDS 30.0%
! TGACTATAAACAACACCTTT+TGG + Chr3:66286427-66286446 None:intergenic 30.0%
! TTTGAGTTTAATCCTTGGTT+GGG - Chr3:66286468-66286487 MsG0380015178.01.T01:CDS 30.0%
!! GTTGGTGTTATACATAAAGA+TGG - Chr3:66287102-66287121 MsG0380015178.01.T01:CDS 30.0%
!!! ACCTAAGATGGTTGTTTTTA+TGG - Chr3:66287389-66287408 MsG0380015178.01.T01:intron 30.0%
!!! TAAGATGGTTGTTTTTATGG+AGG - Chr3:66287392-66287411 MsG0380015178.01.T01:intron 30.0%
AAATGCATCTCATACATTGC+TGG + Chr3:66286046-66286065 None:intergenic 35.0%
AAGTTTGTGACCAAGTGAAA+CGG + Chr3:66285558-66285577 None:intergenic 35.0%
ACACTTTATGGTACCTAAGA+TGG - Chr3:66287377-66287396 MsG0380015178.01.T01:intron 35.0%
ATCTTAGGTACCATAAAGTG+TGG + Chr3:66287378-66287397 None:intergenic 35.0%
ATGGATAACCTACCAAAATG+TGG - Chr3:66285442-66285461 MsG0380015178.01.T01:three_prime_UTR 35.0%
CAACCATTACAATGGAACAT+AGG + Chr3:66286529-66286548 None:intergenic 35.0%
CATCTATCACAATCACTAGT+GGG + Chr3:66286258-66286277 None:intergenic 35.0%
CATCTTGAATTTCTTCAGGA+AGG + Chr3:66286357-66286376 None:intergenic 35.0%
CTATGTTCCATTGTAATGGT+TGG - Chr3:66286527-66286546 MsG0380015178.01.T01:CDS 35.0%
GAAAGTTAAAGGAGTGAGTA+TGG + Chr3:66285479-66285498 None:intergenic 35.0%
GCTCTCATCAAGAAAGTTAA+AGG + Chr3:66285490-66285509 None:intergenic 35.0%
GGTAATGTCCATAGATAAAC+TGG + Chr3:66286508-66286527 None:intergenic 35.0%
GTAAGAGATGGGAAAACAAT+GGG - Chr3:66286979-66286998 MsG0380015178.01.T01:CDS 35.0%
GTAGTGAACCAGTTTATCTA+TGG - Chr3:66286497-66286516 MsG0380015178.01.T01:CDS 35.0%
GTTCACACTTCAACAATTTG+AGG - Chr3:66287646-66287665 MsG0380015178.01.T01:CDS 35.0%
TAAGAGATGGGAAAACAATG+GGG - Chr3:66286980-66286999 MsG0380015178.01.T01:CDS 35.0%
TAATGGTTGGACATTCACTT+GGG - Chr3:66286540-66286559 MsG0380015178.01.T01:CDS 35.0%
TACCACAAAACACTTAGCTT+TGG + Chr3:66287466-66287485 None:intergenic 35.0%
TCATACATTGCTGGAATGTT+TGG + Chr3:66286037-66286056 None:intergenic 35.0%
TCATCTATCACAATCACTAG+TGG + Chr3:66286259-66286278 None:intergenic 35.0%
TCTTTGCAATATTGAGAGCA+CGG + Chr3:66285612-66285631 None:intergenic 35.0%
TGAATGTCCAACCATTACAA+TGG + Chr3:66286537-66286556 None:intergenic 35.0%
TTAATCCTTGGTTGGGAAAT+GGG - Chr3:66286475-66286494 MsG0380015178.01.T01:CDS 35.0%
TTGTAGTTACCTAAGTGAGA+GGG + Chr3:66285413-66285432 None:intergenic 35.0%
TTTAATCCTTGGTTGGGAAA+TGG - Chr3:66286474-66286493 MsG0380015178.01.T01:CDS 35.0%
! CTTTGAGTTTAATCCTTGGT+TGG - Chr3:66286467-66286486 MsG0380015178.01.T01:CDS 35.0%
! GTTAGTTGTTTCCACTTAGT+AGG - Chr3:66287768-66287787 MsG0380015178.01.T01:CDS 35.0%
! TGATTCTTGTTGTGTTACTG+AGG - Chr3:66287320-66287339 MsG0380015178.01.T01:intron 35.0%
! TTTATGACTCTCTTTTCGCT+TGG + Chr3:66286703-66286722 None:intergenic 35.0%
!! CATTTTGGTAGGTTATCCAT+TGG + Chr3:66285442-66285461 None:intergenic 35.0%
!! GGTGTTGTTTATAGTCATAG+AGG - Chr3:66286430-66286449 MsG0380015178.01.T01:CDS 35.0%
!!! CATTTTTTTCCCTCTCACTT+AGG - Chr3:66285401-66285420 MsG0380015178.01.T01:three_prime_UTR 35.0%
!!! GTATAGTTTGCTCCACATTT+TGG + Chr3:66285457-66285476 None:intergenic 35.0%
AAGAGATGGGAAAACAATGG+GGG - Chr3:66286981-66287000 MsG0380015178.01.T01:CDS 40.0%
AAGGGAAGTGGAATCATGAT+GGG - Chr3:66287015-66287034 MsG0380015178.01.T01:CDS 40.0%
AATGGGGGAGATTATGTTGA+AGG - Chr3:66286996-66287015 MsG0380015178.01.T01:CDS 40.0%
AATGGTTGGACATTCACTTG+GGG - Chr3:66286541-66286560 MsG0380015178.01.T01:CDS 40.0%
AGAGGCCTTAAGATTACTCA+TGG - Chr3:66286198-66286217 MsG0380015178.01.T01:CDS 40.0%
AGTTTGTGACCAAGTGAAAC+GGG + Chr3:66285557-66285576 None:intergenic 40.0%
ATGGGGGAGATTATGTTGAA+GGG - Chr3:66286997-66287016 MsG0380015178.01.T01:CDS 40.0%
CCACCAGTTAGTATATTCAC+CGG + Chr3:66286730-66286749 None:intergenic 40.0%
CTTGGTCACAAACTTATGAC+CGG - Chr3:66285563-66285582 MsG0380015178.01.T01:three_prime_UTR 40.0%
GAGATTATGTTGAAGGGAAG+TGG - Chr3:66287003-66287022 MsG0380015178.01.T01:CDS 40.0%
GGTAAGAGATGGGAAAACAA+TGG - Chr3:66286978-66286997 MsG0380015178.01.T01:CDS 40.0%
GGTACAACTTCAGAACCAAA+AGG - Chr3:66286409-66286428 MsG0380015178.01.T01:CDS 40.0%
GTAATGGTTGGACATTCACT+TGG - Chr3:66286539-66286558 MsG0380015178.01.T01:CDS 40.0%
GTTGTAGTTACCTAAGTGAG+AGG + Chr3:66285414-66285433 None:intergenic 40.0%
TACGAGCAAATGGTTCATCA+TGG - Chr3:66286319-66286338 MsG0380015178.01.T01:CDS 40.0%
TCTCCGGTGAATATACTAAC+TGG - Chr3:66286724-66286743 MsG0380015178.01.T01:CDS 40.0%
TCTTGAAACAATGGAGAGTG+TGG - Chr3:66286957-66286976 MsG0380015178.01.T01:CDS 40.0%
TGCAATGCCACATCCAAAAT+GGG - Chr3:66287245-66287264 MsG0380015178.01.T01:intron 40.0%
TGTGACACTAAGGAAGAATG+AGG - Chr3:66287287-66287306 MsG0380015178.01.T01:intron 40.0%
TTGCAATGCCACATCCAAAA+TGG - Chr3:66287244-66287263 MsG0380015178.01.T01:intron 40.0%
TTTGTGAGTGGCAGAAGAAA+TGG - Chr3:66286848-66286867 MsG0380015178.01.T01:CDS 40.0%
! AGCCAAAGCTAAGTGTTTTG+TGG - Chr3:66287461-66287480 MsG0380015178.01.T01:intron 40.0%
! ATGGACTAACTGAAGCAACA+GGG - Chr3:66286815-66286834 MsG0380015178.01.T01:CDS 40.0%
! CTTAGTGTCACAAAAGCACA+AGG + Chr3:66287279-66287298 None:intergenic 40.0%
! CTTGTGCTTTTGTGACACTA+AGG - Chr3:66287277-66287296 MsG0380015178.01.T01:intron 40.0%
! GATGCATTTTGCAGTACCTA+TGG - Chr3:66286057-66286076 MsG0380015178.01.T01:CDS 40.0%
! TATGGACTAACTGAAGCAAC+AGG - Chr3:66286814-66286833 MsG0380015178.01.T01:CDS 40.0%
! TGGCTCGATTTTCTCAAGTA+GGG + Chr3:66286770-66286789 None:intergenic 40.0%
! TGGTTTAGAACTGGTGATGT+TGG - Chr3:66287084-66287103 MsG0380015178.01.T01:CDS 40.0%
!! ACAGCAGCTTCTAAAACCTT+AGG + Chr3:66287222-66287241 None:intergenic 40.0%
!! AGTTTGCTCCACATTTTGGT+AGG + Chr3:66285453-66285472 None:intergenic 40.0%
!! ATCTGCTTCAGCTTGTTATG+TGG - Chr3:66287697-66287716 MsG0380015178.01.T01:CDS 40.0%
!!! AGCATCGATTGCTCTCTTTT+CGG + Chr3:66286883-66286902 None:intergenic 40.0%
!!! TAAGGTTTTAGAAGCTGCTG+TGG - Chr3:66287221-66287240 MsG0380015178.01.T01:intron 40.0%
AGGGAAGTGGAATCATGATG+GGG - Chr3:66287016-66287035 MsG0380015178.01.T01:CDS 45.0%
ATGAAGGAACCCGTTTCACT+TGG - Chr3:66285545-66285564 MsG0380015178.01.T01:three_prime_UTR 45.0%
CCGGTGAATATACTAACTGG+TGG - Chr3:66286727-66286746 MsG0380015178.01.T01:CDS 45.0%
CTTCATGGATGACTGAGGTT+CGG + Chr3:66285531-66285550 None:intergenic 45.0%
CTTGAGAAAATCGAGCCACT+TGG - Chr3:66286772-66286791 MsG0380015178.01.T01:CDS 45.0%
GAAGGGAAGTGGAATCATGA+TGG - Chr3:66287014-66287033 MsG0380015178.01.T01:CDS 45.0%
GACACTAAGGAAGAATGAGG+AGG - Chr3:66287290-66287309 MsG0380015178.01.T01:intron 45.0%
GATGACATAAACACTCCCAC+CGG - Chr3:66286274-66286293 MsG0380015178.01.T01:CDS 45.0%
GCAATGCCACATCCAAAATG+GGG - Chr3:66287246-66287265 MsG0380015178.01.T01:intron 45.0%
TCGAAGAATGGTGGCTATGT+TGG + Chr3:66286125-66286144 None:intergenic 45.0%
! AAGTGAAACGGGTTCCTTCA+TGG + Chr3:66285546-66285565 None:intergenic 45.0%
! ATGGAGAGTGTGGTAAGAGA+TGG - Chr3:66286967-66286986 MsG0380015178.01.T01:CDS 45.0%
! ATTTTCTCAAGTAGGGACGC+CGG + Chr3:66286763-66286782 None:intergenic 45.0%
! CAAGGACTTTCACCCCATTT+TGG + Chr3:66287261-66287280 None:intergenic 45.0%
! CATTTTGCAGTACCTATGGC+CGG - Chr3:66286061-66286080 MsG0380015178.01.T01:CDS 45.0%
! CTTTCACCCCATTTTGGATG+TGG + Chr3:66287255-66287274 None:intergenic 45.0%
! GTGGCTCGATTTTCTCAAGT+AGG + Chr3:66286771-66286790 None:intergenic 45.0%
! TGCAATATTGAGAGCACGGA+GGG + Chr3:66285608-66285627 None:intergenic 45.0%
! TGGAGAGTGTGGTAAGAGAT+GGG - Chr3:66286968-66286987 MsG0380015178.01.T01:CDS 45.0%
! TTGCAATATTGAGAGCACGG+AGG + Chr3:66285609-66285628 None:intergenic 45.0%
CACCATTCTTCGACACTCTG+AGG - Chr3:66286132-66286151 MsG0380015178.01.T01:CDS 50.0%
CACTACCCATTTCCCAACCA+AGG + Chr3:66286483-66286502 None:intergenic 50.0%
CATCAACCACCGTCTCAATG+CGG - Chr3:66286099-66286118 MsG0380015178.01.T01:CDS 50.0%
CGAACCTCAGTCATCCATGA+AGG - Chr3:66285529-66285548 MsG0380015178.01.T01:three_prime_UTR 50.0%
CGAGCTCGAATACGAGCAAA+TGG - Chr3:66286309-66286328 MsG0380015178.01.T01:CDS 50.0%
CGATGCTTAAAGCGCGACAA+GGG - Chr3:66286896-66286915 MsG0380015178.01.T01:CDS 50.0%
CTATGTTGGCCGCATTGAGA+CGG + Chr3:66286111-66286130 None:intergenic 50.0%
GACGAGATAGAGCCATAAGC+TGG + Chr3:66287542-66287561 None:intergenic 50.0%
GATGCTTAAAGCGCGACAAG+GGG - Chr3:66286897-66286916 MsG0380015178.01.T01:CDS 50.0%
GGACTGCTCAACCTACTAAG+TGG + Chr3:66287782-66287801 None:intergenic 50.0%
GGTTCCTTCATGGATGACTG+AGG + Chr3:66285536-66285555 None:intergenic 50.0%
TAAACACTCCCACCGGAATC+CGG - Chr3:66286281-66286300 MsG0380015178.01.T01:CDS 50.0%
TAGATCAGCGACCGCAATCT+AGG - Chr3:66285820-66285839 MsG0380015178.01.T01:CDS 50.0%
TAGATTGCGGTCGCTGATCT+AGG + Chr3:66285821-66285840 None:intergenic 50.0%
TCGATGCTTAAAGCGCGACA+AGG - Chr3:66286895-66286914 MsG0380015178.01.T01:CDS 50.0%
TGCCACTCACAAACAAGTGC+TGG + Chr3:66286841-66286860 None:intergenic 50.0%
! AATATTGAGAGCACGGAGGG+AGG + Chr3:66285605-66285624 None:intergenic 50.0%
! GATGGTGTTTAGGACAGCAC+CGG + Chr3:66286083-66286102 None:intergenic 50.0%
! TTTTCTCAAGTAGGGACGCC+GGG + Chr3:66286762-66286781 None:intergenic 50.0%
!! CTCAGAGTGTCGAAGAATGG+TGG + Chr3:66286134-66286153 None:intergenic 50.0%
!! GACGGTGGTTGATGGTGTTT+AGG + Chr3:66286093-66286112 None:intergenic 50.0%
!! GGGGATGGTTGGTTTAGAAC+TGG - Chr3:66287075-66287094 MsG0380015178.01.T01:CDS 50.0%
AAGCGACGGCGAAAGCTTTC+GGG - Chr3:66287055-66287074 MsG0380015178.01.T01:CDS 55.0%
ACTTGGGGTGTAGCTGCAAG+AGG - Chr3:66286556-66286575 MsG0380015178.01.T01:CDS 55.0%
CGAAAGCTTTCGGGGATGGT+TGG - Chr3:66287064-66287083 MsG0380015178.01.T01:CDS 55.0%
CGCATTGAGACGGTGGTTGA+TGG + Chr3:66286101-66286120 None:intergenic 55.0%
GAAGCGACGGCGAAAGCTTT+CGG - Chr3:66287054-66287073 MsG0380015178.01.T01:CDS 55.0%
GGCCAGCACTTGTTTGTGAG+TGG - Chr3:66286836-66286855 MsG0380015178.01.T01:CDS 55.0%
TTTCTCAAGTAGGGACGCCG+GGG + Chr3:66286761-66286780 None:intergenic 55.0%
!! CGCCTCAGAGTGTCGAAGAA+TGG + Chr3:66286137-66286156 None:intergenic 55.0%
!! TTTAGGACAGCACCGGCCAT+AGG + Chr3:66286076-66286095 None:intergenic 55.0%
ACGGCGAAAGCTTTCGGGGA+TGG - Chr3:66287060-66287079 MsG0380015178.01.T01:CDS 60.0%
AGCGACGGCGAAAGCTTTCG+GGG - Chr3:66287056-66287075 MsG0380015178.01.T01:CDS 60.0%
CGTATTCGAGCTCGCCTAGC+CGG + Chr3:66286303-66286322 None:intergenic 60.0%
TGGGGTGTAGCTGCAAGAGG+AGG - Chr3:66286559-66286578 MsG0380015178.01.T01:CDS 60.0%
TGTTGGCCGCATTGAGACGG+TGG + Chr3:66286108-66286127 None:intergenic 60.0%
TTCTCAAGTAGGGACGCCGG+GGG + Chr3:66286760-66286779 None:intergenic 60.0%
ACTCCCACCGGAATCCGGCT+AGG - Chr3:66286286-66286305 MsG0380015178.01.T01:CDS 65.0%
GAGCTCGCCTAGCCGGATTC+CGG + Chr3:66286296-66286315 None:intergenic 65.0%
TCGCCTAGCCGGATTCCGGT+GGG + Chr3:66286292-66286311 None:intergenic 65.0%
! AACTGGTGGAGCACCACCCC+CGG - Chr3:66286741-66286760 MsG0380015178.01.T01:CDS 65.0%
AGGAAGCGAGGCGGCGACAC+CGG + Chr3:66285585-66285604 None:intergenic 70.0%
CACGGAGGGAGGAAGCGAGG+CGG + Chr3:66285594-66285613 None:intergenic 70.0%
CTCGCCTAGCCGGATTCCGG+TGG + Chr3:66286293-66286312 None:intergenic 70.0%
GAGCACGGAGGGAGGAAGCG+AGG + Chr3:66285597-66285616 None:intergenic 70.0%
TCAAGTAGGGACGCCGGGGG+TGG + Chr3:66286757-66286776 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 66285385 66287851 66285385 ID=MsG0380015178.01;Name=MsG0380015178.01
Chr3 mRNA 66285385 66287851 66285385 ID=MsG0380015178.01.T01;Parent=MsG0380015178.01;Name=MsG0380015178.01.T01;_AED=0.13;_eAED=0.13;_QI=57|1|1|1|1|1|2|285|581
Chr3 exon 66285385 66287217 66285385 ID=MsG0380015178.01.T01:exon:22962;Parent=MsG0380015178.01.T01
Chr3 exon 66287597 66287851 66287597 ID=MsG0380015178.01.T01:exon:22961;Parent=MsG0380015178.01.T01
Chr3 five_prime_UTR 66287795 66287851 66287795 ID=MsG0380015178.01.T01:five_prime_utr;Parent=MsG0380015178.01.T01
Chr3 CDS 66287597 66287794 66287597 ID=MsG0380015178.01.T01:cds;Parent=MsG0380015178.01.T01
Chr3 CDS 66285670 66287217 66285670 ID=MsG0380015178.01.T01:cds;Parent=MsG0380015178.01.T01
Chr3 three_prime_UTR 66285385 66285669 66285385 ID=MsG0380015178.01.T01:three_prime_utr;Parent=MsG0380015178.01.T01
Gene Sequence

>MsG0380015178.01.T01

ATGGATAACCTACCAAAATGTGGAGCAAACTATACCATACTCACTCCTTTAACTTTCTTGATGAGAGCTTCTGCATCTTATGCAAACCGAACCTCAGTCATCCATGAAGGAACCCGTTTCACTTGGTCACAAACTTATGACCGGTGTCGCCGCCTCGCTTCCTCCCTCCGTGCTCTCAATATTGCAAAGAATGATGTTGTATCAGTTTTGGCACCAAACATTCCAGCAATGTATGAGATGCATTTTGCAGTACCTATGGCCGGTGCTGTCCTAAACACCATCAACCACCGTCTCAATGCGGCCAACATAGCCACCATTCTTCGACACTCTGAGGCGAAAGTCTTCTTCGTAGACTACGAATTCGTATCAAAAGCAAAAGAGGCCTTAAGATTACTCATGGAAGAAAAAGATCAAAAAGAACAATACTCATCACTCCCACTAGTGATTGTGATAGATGACATAAACACTCCCACCGGAATCCGGCTAGGCGAGCTCGAATACGAGCAAATGGTTCATCATGGTAATCCAAATTACCTTCCTGAAGAAATTCAAGATGAATGGTCACCAATTACATTGAATTACACATCAGGTACAACTTCAGAACCAAAAGGTGTTGTTTATAGTCATAGAGGAGCTTATTTAAGTACTTTGAGTTTAATCCTTGGTTGGGAAATGGGTAGTGAACCAGTTTATCTATGGACATTACCTATGTTCCATTGTAATGGTTGGACATTCACTTGGGGTGTAGCTGCAAGAGGAGGTACTAATATTTGTATCAGAAACACTGCAGCATCTGATATATATAGAGCCATAAATCTCTATAATGTGACACACATGTGTTGCGCACCCATCATTTTCAATATTATTTTAGGCGCGAAACCAAGCGAAAAGAGAGTCATAAAATCTCCGGTGAATATACTAACTGGTGGAGCACCACCCCCGGCGTCCCTACTTGAGAAAATCGAGCCACTTGGTTTTAATGTAACACATGCTTATGGACTAACTGAAGCAACAGGGCCAGCACTTGTTTGTGAGTGGCAGAAGAAATGGAATGTGTTACCGAAAAGAGAGCAATCGATGCTTAAAGCGCGACAAGGGGTTAGTGTTTTGACACTTGCTGATGTTGATGTGAAGAATCTTGAAACAATGGAGAGTGTGGTAAGAGATGGGAAAACAATGGGGGAGATTATGTTGAAGGGAAGTGGAATCATGATGGGGTATTTTAAAGATAAAGAAGCGACGGCGAAAGCTTTCGGGGATGGTTGGTTTAGAACTGGTGATGTTGGTGTTATACATAAAGATGGTTATTTGGAAATTAAAGATAGGTCTAAAGATGTGATTATTTCAGGAGGTGAAAATATTAGTAGTGTTGAAGTTGAAAATGTTCTTTATAGTCATCCTAAGGTTTTAGAAGCTGCTGTGGTTGCAATGCCACATCCAAAATGGGGTGAAAGTCCTTGTGCTTTTGTGACACTAAGGAAGAATGAGGAGGAAAAAAGTGATTCTTGTTGTGTTACTGAGGATGAGATAATTACCTATTGTAGGAAGAATTTACCACACTTTATGGTACCTAAGATGGTTGTTTTTATGGAGGATTTACCAAAGACTTTAACAGGTAAGATTCAGAAATTTGAATTAAGAGCCAAAGCTAAGTGTTTTGTGGTAAATGATGAGAAGAATAAGAAGAAGCCTAATAATCAAGTCAATCATAATAATGACCAGCTTATGGCTCTATCTCGTCTTTGA

Protein sequence

>MsG0380015178.01.T01

MDNLPKCGANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALNIAKNDVVSVLAPNIPAMYEMHFAVPMAGAVLNTINHRLNAANIATILRHSEAKVFFVDYEFVSKAKEALRLLMEEKDQKEQYSSLPLVIVIDDINTPTGIRLGELEYEQMVHHGNPNYLPEEIQDEWSPITLNYTSGTTSEPKGVVYSHRGAYLSTLSLILGWEMGSEPVYLWTLPMFHCNGWTFTWGVAARGGTNICIRNTAASDIYRAINLYNVTHMCCAPIIFNIILGAKPSEKRVIKSPVNILTGGAPPPASLLEKIEPLGFNVTHAYGLTEATGPALVCEWQKKWNVLPKREQSMLKARQGVSVLTLADVDVKNLETMESVVRDGKTMGEIMLKGSGIMMGYFKDKEATAKAFGDGWFRTGDVGVIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYSHPKVLEAAVVAMPHPKWGESPCAFVTLRKNEEEKSDSCCVTEDEIITYCRKNLPHFMVPKMVVFMEDLPKTLTGKIQKFELRAKAKCFVVNDEKNKKKPNNQVNHNNDQLMALSRL*