AlfalfaGEDB | MsG0880043249.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043249.01

KEGG: K15095
GO: GO:0016491
PFAM: PF00106 PF13561

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043249.01.T01	XP_027905957.1	61.436	752	197	4	10	683	180	916	0	926
MsG0880043249.01.T01	XP_027905957.1	63.023	622	170	4	107	683	7	613	0	783

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043249.01.T01	Q9M2E2	57.971	276	109	4	107	380	7	277	9.96E-108	331

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043249.01.T01	A0A4D6MRN2	63.435	722	199	6	10	683	165	869	0.0	924

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0880043249.01	0.805250	1.461364e-49	7.693968e-47
MsG0080047884.01	MsG0880043249.01	0.826969	2.026667e-54	1.930010e-51
MsG0080047885.01	MsG0880043249.01	0.811303	7.489512e-51	4.619366e-48
MsG0080047955.01	MsG0880043249.01	0.821962	3.054315e-53	2.521875e-50
MsG0080047989.01	MsG0880043249.01	0.823037	1.718505e-53	1.463130e-50
MsG0080048068.01	MsG0880043249.01	0.800831	1.198500e-48	5.636414e-46
MsG0080048191.01	MsG0880043249.01	0.848747	5.034144e-60	9.331815e-57
MsG0080048198.01	MsG0880043249.01	0.851909	6.525445e-61	1.340619e-57
MsG0080048273.01	MsG0880043249.01	0.802841	4.633471e-49	2.293227e-46
MsG0080048528.01	MsG0880043249.01	0.861247	1.173169e-63	3.298030e-60

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043249.01.T01	MTR_8g031650	54.905	581	228	9	107	683	7	557	0.0	612
MsG0880043249.01.T01	MTR_8g031650	54.639	388	161	6	6	389	173	549	5.99e-141	424
MsG0880043249.01.T01	MTR_8g031980	91.558	308	10	1	376	683	7	298	0.0	559
MsG0880043249.01.T01	MTR_8g031980	68.613	274	86	0	107	380	7	280	4.86e-134	396
MsG0880043249.01.T01	MTR_8g031980	61.062	113	43	1	6	117	175	287	5.41e-42	154
MsG0880043249.01.T01	MTR_8g031960	84.466	309	31	2	376	683	8	300	0.0	518
MsG0880043249.01.T01	MTR_8g031960	69.455	275	82	2	107	380	8	281	2.39e-133	394
MsG0880043249.01.T01	MTR_8g031960	60.177	113	44	1	6	117	176	288	1.93e-41	153
MsG0880043249.01.T01	MTR_8g032010	85.915	284	39	1	107	389	7	290	6.36e-177	506
MsG0880043249.01.T01	MTR_8g032010	65.273	311	92	1	373	683	4	298	1.92e-140	412

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043249.01.T01	AT3G61220	57.971	276	109	4	107	380	7	277	1.02e-108	331
MsG0880043249.01.T01	AT3G61220	54.808	312	115	6	376	683	7	296	1.10e-107	328
MsG0880043249.01.T01	AT3G61220	55.769	104	46	0	8	111	174	277	1.51e-37	142
MsG0880043249.01.T01	AT3G61220	57.971	276	109	4	107	380	14	284	2.64e-108	330
MsG0880043249.01.T01	AT3G61220	54.808	312	115	6	376	683	14	303	2.19e-107	328
MsG0880043249.01.T01	AT3G61220	55.769	104	46	0	8	111	181	284	2.67e-37	141
MsG0880043249.01.T01	AT1G01800	54.516	310	120	5	376	683	5	295	4.86e-108	329
MsG0880043249.01.T01	AT1G01800	52.921	291	130	6	103	390	2	288	3.24e-101	311
MsG0880043249.01.T01	AT1G01800	52.137	117	55	1	6	121	172	288	1.27e-35	136
MsG0880043249.01.T01	AT3G61220	57.971	276	109	4	107	380	38	308	5.93e-108	330

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Find 124 sgRNAs with CRISPR-Local

Find 759 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGAGACTTCGGTC+CGG	0.622969	8:+21251446	None:intergenic
AAAGGCTGGCCTAAAACTGG+TGG	0.667637	8:-21251679	MsG0880043249.01.T01:CDS
AAATGCAGGTTAACAATGCA+GGG	0.523420	8:-21252360	MsG0880043249.01.T01:intron
AACAAAATCAGATAAACCGG+AGG	0.696500	8:+21253163	None:intergenic
AACAGAAGATGAAAAGAATA+AGG	0.333995	8:-21252097	MsG0880043249.01.T01:CDS
AAGAATAGATGAAGTGTTAA+AGG	0.213868	8:-21264540	MsG0880043249.01.T01:CDS
AAGCTAGCACTACTTCCCAA+TGG	0.625738	8:-21251493	MsG0880043249.01.T01:CDS
AAGGAGCTGCAAATCCAGTT+AGG	0.483475	8:-21264313	MsG0880043249.01.T01:intron
AAGGTGCTGCTCATCCTGTT+AGG	0.448829	8:-21256320	MsG0880043249.01.T01:intron
AATATCAAGTTTGCCAAATT+GGG	0.350754	8:+21253076	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAGATAACATGAGGT+AGG	-	Chr8:21255256-21255275	MsG0880043249.01.T01:intron	30.0%
AAAATGTTACCCTCTCTATA+TGG	+	Chr8:21262666-21262685	None:intergenic	30.0%
AAACAAGATAACATGAGGTA+GGG	-	Chr8:21255257-21255276	MsG0880043249.01.T01:intron	30.0%
AAAGAGACAAATATTGAGAG+AGG	-	Chr8:21260872-21260891	MsG0880043249.01.T01:intron	30.0%
AACATGATATGTGTTGAAGT+TGG	-	Chr8:21253370-21253389	MsG0880043249.01.T01:intron	30.0%
AAGAAAATTTAAGGAGGTCA+TGG	-	Chr8:21255400-21255419	MsG0880043249.01.T01:intron	30.0%
AAGACCATTGTCCAATATTA+TGG	-	Chr8:21256916-21256935	MsG0880043249.01.T01:intron	30.0%
AATCTTGCATTAGAACACTA+TGG	-	Chr8:21252759-21252778	MsG0880043249.01.T01:intron	30.0%
AATTCTTCTCTTATTCACAG+CGG	-	Chr8:21261250-21261269	MsG0880043249.01.T01:CDS	30.0%
ACACAATTGATGCAGAAATT+AGG	+	Chr8:21251663-21251682	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	21251444	21264633	21251444	ID=MsG0880043249.01;Name=MsG0880043249.01
Chr8	mRNA	21251444	21264633	21251444	ID=MsG0880043249.01.T01;Parent=MsG0880043249.01;Name=MsG0880043249.01.T01;_AED=0.48;_eAED=0.51;_QI=0\|0\|0\|1\|1\|1\|9\|0\|683
Chr8	exon	21264314	21264633	21264314	ID=MsG0880043249.01.T01:exon:5710;Parent=MsG0880043249.01.T01
Chr8	exon	21261161	21261407	21261161	ID=MsG0880043249.01.T01:exon:5709;Parent=MsG0880043249.01.T01
Chr8	exon	21260391	21260465	21260391	ID=MsG0880043249.01.T01:exon:5708;Parent=MsG0880043249.01.T01
Chr8	exon	21259222	21259398	21259222	ID=MsG0880043249.01.T01:exon:5707;Parent=MsG0880043249.01.T01
Chr8	exon	21256321	21256628	21256321	ID=MsG0880043249.01.T01:exon:5706;Parent=MsG0880043249.01.T01
Chr8	exon	21253073	21253319	21253073	ID=MsG0880043249.01.T01:exon:5705;Parent=MsG0880043249.01.T01
Chr8	exon	21252300	21252374	21252300	ID=MsG0880043249.01.T01:exon:5704;Parent=MsG0880043249.01.T01
Chr8	exon	21251900	21252124	21251900	ID=MsG0880043249.01.T01:exon:5703;Parent=MsG0880043249.01.T01
Chr8	exon	21251444	21251821	21251444	ID=MsG0880043249.01.T01:exon:5702;Parent=MsG0880043249.01.T01
Chr8	CDS	21264314	21264633	21264314	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21261161	21261407	21261161	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21260391	21260465	21260391	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21259222	21259398	21259222	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21256321	21256628	21256321	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21253073	21253319	21253073	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21252300	21252374	21252300	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21251900	21252124	21251900	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01
Chr8	CDS	21251444	21251821	21251444	ID=MsG0880043249.01.T01:cds;Parent=MsG0880043249.01.T01

Gene Sequence

>MsG0880043249.01.T01

ATGTCACATCAATTAATATCAAATGAATGGGTTAAAGGAGTCTTCACTGATGTTGATAACCTCACAGAAGAAAGAATAGATGAAGTGTTAAAGGAGTTTATCAAAGATTTTGAAGAAGGGTCCTTAGTAAGAAAAGGTTGGCCTAGGTTTGCAGCTGCATATACTGTTGCCAAAGCTTCTATGAATGCATATATTAGAATTCTTGCAAAGAAATATCCTAATTTCTGCATCAATTGTGTGTGCCCTGGTTATGTCAAGGCTGATATGACTACTAATACTGGTATATTGACAGTAGAAGAAGGAGCTGCAAATCCAGTTAGGTATGCAGTGGTGACAGGATCAAACAAAGGAATTGGATTTGAGATAGTAAGGCAGTTAGCTTCAGCTGGAATCAAAGTGGTGCTTACATCAAGAGATGAGAAAAGAGGTCTTCATGCTTTGGAGACACTTAAAGCTTCTAGTTTATCTGATCTTGTTGTCTTTCATCAACTAGATGTGGCTGATGCTACAAGTGTAGCTACTCTTGCAGATTTTGTCCAATCTCAATTTGGCAAACTTGATATGCTGGTTAACAATGCTGGGATTGGCGGAATTGAAATTAAAGATACTGATTTATTCACTTCAGCACTCGTTACAAACGGGGCACTATCTGATGATGAATTGAGAAGGGCAATGACACAAACACTTGAGTCAGCTAAAGAATGCATTGAAATAAATTATTATGGAGCTAAAAGAATAATTGAATACCTTCTTCCCCTCCTTCAATTATCTGATTCACCAAGAGTAGTCAATGTATCATCAGGATTGGGCAAGATAGAGTGTGTATCAAATGAGTGGGCTAAAGGTGTCTTCGGTGATGTTGAAAAGCTCACAGAAGAGAGAATAGATGAAGTGATAAAGGAGTTTATTAAAGATTTTGAAGAAGGGTCCTTAGAAAGAAAAGGTTGGCCTAGATATGCTGCTGCCTACACTGTTGCTAAAGCTTCTATGAATGCATATACAAGAATTATTGCAAAAAAGTATCCTAACTTCTGCATCAATTGTGTGTGTCCTGGTTATGTCAAAACAGATATAACTGCTAATACTGGTTTCTTTACAGTAGAAGAAGGTGCTGCTCATCCTGTTAGGATTGCAGTGGTGACTGGAGCAAACAAAGGAATTGGATTTGAGATAGTTAAGCAGTTAGCTTCAGCTGGAATCAAAGTTGTGCTTACTGCAAGAGATGAGAAAAGAGGTCTTCATGCTTTGGAGACACTCAAAGCCTCCGGTTTATCTGATTTTGTTGTCTTTTATCAAGTAGATGTGGCTAATGCTGCAAGTGTGGCATCTCTAGCAGATTTCGTCAAATCCCAATTTGGCAAACTTGATATTCTGGTTAACAATGCAGGGATTAGTGGAACTGTAATTAATGACAAAGATTTAGCTACTTTGCTGATCTCTAACTCTGGAGCATTAACAGAAGATGAAAAGAATAAGGCAGTGACTCAAACATATGAGTTAGCTGAAGAATGCTTGCAAATAAATTACTATGGTGCTAAAATAACTACTGAATCACTTATGCCCCTCCTAAAGTTATCTGATTCACCAAGAATTGTGAATGTATCATCCACTCTGGGAAAGTTAGAGGTAAACTGTTTTAGTCCTTATGTTATTGACTTTCTAAGGTTAATCAGTGGCATACAAAATGAATGGACTAAAAAAGTCTTCAGTGATGCTGATAACCTAACTGAAGAGAAAGTCGATGAAGTATTGAAGAAGTTTCTAGAAGATTACAAAGAAGGTTCATTGGAAAGCAAAGGCTGGCCTAAAACTGGTGGTGCTTATGTCTTGTCTAAAGCTGCTATGAATGCTTATACAAGAATTCTTGCTAAGAAATTCCCTACTTTAAGCGTCAATAGTGTTTGCCCTGGCTATGTCATCACAGATATTACTGGCAATACTGGTCTCTTAACTGCTGAAGAAGGTGCTGCTAGTGTTGTGAAGCTAGCACTACTTCCCAATGGAAGTCCATCTGGCCGATTCTATAACCGGACCGAAGTCTCTTCCTTTTGA

Protein sequence

>MsG0880043249.01.T01

MSHQLISNEWVKGVFTDVDNLTEERIDEVLKEFIKDFEEGSLVRKGWPRFAAAYTVAKASMNAYIRILAKKYPNFCINCVCPGYVKADMTTNTGILTVEEGAANPVRYAVVTGSNKGIGFEIVRQLASAGIKVVLTSRDEKRGLHALETLKASSLSDLVVFHQLDVADATSVATLADFVQSQFGKLDMLVNNAGIGGIEIKDTDLFTSALVTNGALSDDELRRAMTQTLESAKECIEINYYGAKRIIEYLLPLLQLSDSPRVVNVSSGLGKIECVSNEWAKGVFGDVEKLTEERIDEVIKEFIKDFEEGSLERKGWPRYAAAYTVAKASMNAYTRIIAKKYPNFCINCVCPGYVKTDITANTGFFTVEEGAAHPVRIAVVTGANKGIGFEIVKQLASAGIKVVLTARDEKRGLHALETLKASGLSDFVVFYQVDVANAASVASLADFVKSQFGKLDILVNNAGISGTVINDKDLATLLISNSGALTEDEKNKAVTQTYELAEECLQINYYGAKITTESLMPLLKLSDSPRIVNVSSTLGKLEVNCFSPYVIDFLRLISGIQNEWTKKVFSDADNLTEEKVDEVLKKFLEDYKEGSLESKGWPKTGGAYVLSKAAMNAYTRILAKKFPTLSVNSVCPGYVITDITGNTGLLTAEEGAASVVKLALLPNGSPSGRFYNRTEVSSF*