AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046866.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046866.01.T01 MTR_4g116190 96.588 469 15 1 1 469 1 468 0.0 933
MsG0880046866.01.T01 MTR_1g012850 63.768 414 136 8 62 464 43 453 0.0 517
MsG0880046866.01.T01 MTR_3g106550 59.113 406 156 7 63 465 47 445 9.25e-162 465
MsG0880046866.01.T01 MTR_3g106550 60.857 350 130 5 62 411 46 388 2.04e-140 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046866.01.T01 AT4G32060 62.069 406 129 6 64 446 67 470 1.11e-172 494
MsG0880046866.01.T01 AT4G32060 62.162 370 115 6 64 410 67 434 5.99e-152 440

Find 86 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTTATGGAAAAGTTAA+TGG 0.221348 8:-79240466 MsG0880046866.01.T01:CDS
CCTTTCATCACCACCATTTC+CGG 0.227693 8:+79242545 None:intergenic
TTGGGACCACCTTAGGCTTT+TGG 0.283646 8:-79242470 MsG0880046866.01.T01:CDS
GAAGACATTTCCTCACGTTT+TGG 0.303320 8:-79240180 MsG0880046866.01.T01:CDS
TGCAAAATCCTTGGCCGAAA+TGG 0.315325 8:+79240654 None:intergenic
TTAAGAGGGGAACAGTTTCC+CGG 0.335893 8:-79241557 MsG0880046866.01.T01:CDS
GCCACTGAAAAGCTGGATTC+TGG 0.336535 8:+79241303 None:intergenic
GTGAAAACACCGATAGAAAA+TGG 0.353884 8:-79241033 MsG0880046866.01.T01:CDS
TTTCTTAGGACAATAACTTC+TGG 0.357278 8:-79242504 MsG0880046866.01.T01:CDS
TGGTCATCTTTATCTTCTCC+TGG 0.361095 8:-79242444 MsG0880046866.01.T01:CDS
AAATCCAAGTTTCTCTTCAA+TGG 0.378137 8:-79242351 MsG0880046866.01.T01:intron
TTCTTAGGACAATAACTTCT+GGG 0.389196 8:-79242503 MsG0880046866.01.T01:CDS
CTTCTGGGACTGTGGTTGTT+GGG 0.392623 8:-79242488 MsG0880046866.01.T01:CDS
GTGGTTGTTGGGACCACCTT+AGG 0.398220 8:-79242477 MsG0880046866.01.T01:CDS
GTTAGAGAAGGTTCTTTAAG+AGG 0.402225 8:-79241572 MsG0880046866.01.T01:CDS
CTCCGTTGAGCTCTTTCGAT+GGG 0.404959 8:-79242569 MsG0880046866.01.T01:CDS
CAATAAAAGAGGAACCATTT+CGG 0.419212 8:-79240668 MsG0880046866.01.T01:CDS
TTTAAAAGCCACTGAAAAGC+TGG 0.420902 8:+79241296 None:intergenic
GATAGAAAATGGCGGTCTCT+TGG 0.430949 8:-79241022 MsG0880046866.01.T01:CDS
TCTCTGGCCATATTCAGTTA+TGG 0.434138 8:-79240478 MsG0880046866.01.T01:CDS
TGGAAAAGTTAATGGAGTAT+TGG 0.435781 8:-79240458 MsG0880046866.01.T01:CDS
TGTTTGATATTGACAGTAAC+GGG 0.436083 8:-79241272 MsG0880046866.01.T01:intron
ACATAAACAAACTGCTGGAT+AGG 0.437978 8:-79240600 MsG0880046866.01.T01:CDS
TAGCATAATCAGAGAAAGAA+TGG 0.443313 8:+79242406 None:intergenic
TCTTTCGATGGGTCCGGAAA+TGG 0.448624 8:-79242558 MsG0880046866.01.T01:CDS
CTCTTTGACACAAATAATGA+TGG 0.456116 8:-79241500 MsG0880046866.01.T01:CDS
TAATCACATAAACAAACTGC+TGG 0.470159 8:-79240605 MsG0880046866.01.T01:CDS
TTGAGCTCTTTCGATGGGTC+CGG 0.472216 8:-79242564 MsG0880046866.01.T01:CDS
ACTTCTGGGACTGTGGTTGT+TGG 0.473411 8:-79242489 MsG0880046866.01.T01:CDS
CAAGGATAGTGCAAAATCCT+TGG 0.474280 8:+79240645 None:intergenic
GATTCAGAAGGAGGAAATAC+AGG 0.475894 8:+79241602 None:intergenic
CCGGAAATGGTGGTGATGAA+AGG 0.477987 8:-79242545 MsG0880046866.01.T01:CDS
TCTCCGTTGAGCTCTTTCGA+TGG 0.480426 8:-79242570 MsG0880046866.01.T01:CDS
AGACAAAAGAATTACGTTTG+AGG 0.485400 8:-79240545 MsG0880046866.01.T01:CDS
TCGAGTACTTTGCATCGAAT+CGG 0.486747 8:-79241679 MsG0880046866.01.T01:CDS
AAGAGGAACCATTTCGGCCA+AGG 0.487222 8:-79240662 MsG0880046866.01.T01:CDS
CACTATGATCACAATAAAAG+AGG 0.488832 8:-79240679 MsG0880046866.01.T01:CDS
GTTACCATTGAAGAGAAACT+TGG 0.490627 8:+79242347 None:intergenic
CTTGCAAAGTCCTCCAGAAA+AGG 0.491838 8:-79241810 MsG0880046866.01.T01:intron
TGTTGGTTGAACTGTGTAAA+GGG 0.494222 8:-79240138 MsG0880046866.01.T01:CDS
GAAGTTGCAGTCCTTCTCTC+TGG 0.500761 8:-79240494 MsG0880046866.01.T01:CDS
GACAATAACTTCTGGGACTG+TGG 0.505115 8:-79242496 MsG0880046866.01.T01:CDS
TTAGAGAAGGTTCTTTAAGA+GGG 0.506873 8:-79241571 MsG0880046866.01.T01:CDS
TGTTATGTCGTAGAGTCTGT+TGG 0.508095 8:+79242640 None:intergenic
ATGACGTGGTGCGTTGTGAT+TGG 0.519972 8:+79242601 None:intergenic
CACAGAGACGGACGACGCCT+CGG 0.527556 8:-79241057 MsG0880046866.01.T01:CDS
CGGAAATGGTGGTGATGAAA+GGG 0.529236 8:-79242544 MsG0880046866.01.T01:CDS
GTCTTTGATGCTAACCGTGA+TGG 0.529666 8:-79240246 MsG0880046866.01.T01:CDS
TTGGGAATTTGATAACATGT+TGG 0.531352 8:-79240155 MsG0880046866.01.T01:CDS
TTTGCATCGAATCGGATCCC+TGG 0.540228 8:-79241671 MsG0880046866.01.T01:CDS
AGACTCTACGACATAACATA+AGG 0.546354 8:-79242635 MsG0880046866.01.T01:CDS
ATGTTTGATATTGACAGTAA+CGG 0.548784 8:-79241273 MsG0880046866.01.T01:CDS
ATGGCACGCATCAAATCTGC+AGG 0.550914 8:+79241629 None:intergenic
GGATCGCATTCTAACGAGCC+GGG 0.556208 8:+79241539 None:intergenic
CATAAACAAACTGCTGGATA+GGG 0.559819 8:-79240599 MsG0880046866.01.T01:CDS
AGGATCGCATTCTAACGAGC+CGG 0.567310 8:+79241538 None:intergenic
TTTCTCTGATTATGCTACTG+AGG 0.570594 8:-79242400 MsG0880046866.01.T01:CDS
TGGAAAGAGTTATTAGCACC+AGG 0.582088 8:+79242426 None:intergenic
GAATCAAGACGTGTTAGAGA+AGG 0.583261 8:-79241584 MsG0880046866.01.T01:CDS
TTCGATGGGTCCGGAAATGG+TGG 0.585169 8:-79242555 MsG0880046866.01.T01:CDS
ATGTTGGTTGAACTGTGTAA+AGG 0.593116 8:-79240139 MsG0880046866.01.T01:CDS
ACTGAATATGGCCAGAGAGA+AGG 0.593953 8:+79240483 None:intergenic
GAATCGGATCCCTGGTGGCG+AGG 0.604717 8:-79241663 MsG0880046866.01.T01:CDS
GGAAGAATTCAAGAAAGTGA+TGG 0.607415 8:-79241115 MsG0880046866.01.T01:CDS
CAAGGGGCTAACCACAGAGA+CGG 0.611869 8:-79241069 MsG0880046866.01.T01:CDS
TGCGATCTCAAAACAGACAA+GGG 0.611915 8:-79241086 MsG0880046866.01.T01:CDS
TGACCAATACCAAAAGCCTA+AGG 0.612300 8:+79242461 None:intergenic
TAGAGAAGGTTCTTTAAGAG+GGG 0.613134 8:-79241570 MsG0880046866.01.T01:CDS
ACACGTCTTGATTCAGAAGG+AGG 0.614124 8:+79241593 None:intergenic
CTAACACGTCTTGATTCAGA+AGG 0.614135 8:+79241590 None:intergenic
TCTTTGATGCTAACCGTGAT+GGG 0.618328 8:-79240245 MsG0880046866.01.T01:CDS
TGTCAACAGGGAAATAGACA+TGG 0.623190 8:-79241136 MsG0880046866.01.T01:intron
AGGAGGAAATACAGGAACAA+TGG 0.629403 8:+79241610 None:intergenic
CGGAGAAGAAGACGATGACG+TGG 0.631999 8:+79242587 None:intergenic
ATGCGATCTCAAAACAGACA+AGG 0.640169 8:-79241087 MsG0880046866.01.T01:CDS
ATTCCCAAATCCAAAACGTG+AGG 0.644135 8:+79240170 None:intergenic
AATGTCTGCAGATGCAACCA+AGG 0.647906 8:+79240627 None:intergenic
GCATCGAATCGGATCCCTGG+TGG 0.649676 8:-79241668 MsG0880046866.01.T01:CDS
CGAGGCGTCGTCCGTCTCTG+TGG 0.649932 8:+79241058 None:intergenic
CGTTGTGATTGGCTACACAA+CGG 0.666146 8:+79242612 None:intergenic
TTGCACTTAAGCTCCCATCA+CGG 0.666778 8:+79240232 None:intergenic
GACCCATCGAAAGAGCTCAA+CGG 0.673324 8:+79242567 None:intergenic
TGTAATGTCATGTAGGTATG+CGG 0.675183 8:-79240309 MsG0880046866.01.T01:intron
CCAATACCAAAAGCCTAAGG+TGG 0.680665 8:+79242464 None:intergenic
GCGATCTCAAAACAGACAAG+GGG 0.683071 8:-79241085 MsG0880046866.01.T01:CDS
AAAACACCGATAGAAAATGG+CGG 0.745164 8:-79241030 MsG0880046866.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATTGTTAATTTATT+TGG - Chr8:79240868-79240887 MsG0880046866.01.T01:intron 10.0%
!! AATTGTTAATTTATTTGGTT+TGG - Chr8:79240873-79240892 MsG0880046866.01.T01:intron 15.0%
!! AGATGAATAACTTATTATTA+CGG - Chr8:79242457-79242476 MsG0880046866.01.T01:CDS 15.0%
!! TGCATATTATAATTTATTTG+AGG - Chr8:79241924-79241943 MsG0880046866.01.T01:intron 15.0%
!!! AATATATTTTTAGGCATAAT+AGG + Chr8:79242407-79242426 None:intergenic 15.0%
!!! ACTACTGTAAATATATTTTT+AGG + Chr8:79242416-79242435 None:intergenic 15.0%
!!! ATAACAAAATATCTTGTTTT+TGG - Chr8:79241430-79241449 MsG0880046866.01.T01:intron 15.0%
!!! ATATATTTTTAGGCATAATA+GGG + Chr8:79242406-79242425 None:intergenic 15.0%
!!! TAGTATTAAAATTGCTTTTT+GGG - Chr8:79240582-79240601 MsG0880046866.01.T01:CDS 15.0%
!!! TATCAATTTAAAGCTAATTT+AGG + Chr8:79240639-79240658 None:intergenic 15.0%
!!! TTAGTATTAAAATTGCTTTT+TGG - Chr8:79240581-79240600 MsG0880046866.01.T01:CDS 15.0%
!!! TTTTTATAGACAAATATTAG+TGG - Chr8:79240785-79240804 MsG0880046866.01.T01:intron 15.0%
!! AAATTATAATATGCAGATCT+TGG + Chr8:79241919-79241938 None:intergenic 20.0%
!! TAATTTAGGAAGAAAACATT+AGG + Chr8:79240625-79240644 None:intergenic 20.0%
!! TGTCATATTAAAACATTCAA+TGG + Chr8:79241075-79241094 None:intergenic 20.0%
!! TTTGAATCTGTTACTATATA+TGG - Chr8:79240508-79240527 MsG0880046866.01.T01:CDS 20.0%
!!! AAAAATCTTTTCAATCTTCA+AGG + Chr8:79241996-79242015 None:intergenic 20.0%
!!! AATTGATAATCATAGGTTTT+TGG - Chr8:79240651-79240670 MsG0880046866.01.T01:CDS 20.0%
!!! AGCTTTAAATTGATAATCAT+AGG - Chr8:79240644-79240663 MsG0880046866.01.T01:CDS 20.0%
!!! AGTATTAAAATTGCTTTTTG+GGG - Chr8:79240583-79240602 MsG0880046866.01.T01:CDS 20.0%
!!! GAATTTTACAAGATAACTTT+TGG - Chr8:79242030-79242049 MsG0880046866.01.T01:intron 20.0%
! AATTAAACTGCAAGAATTCA+TGG + Chr8:79240857-79240876 None:intergenic 25.0%
! AATTCCATCAATAAAACTGA+AGG + Chr8:79241614-79241633 None:intergenic 25.0%
! ACACTATTGAATTGAATACT+AGG - Chr8:79240720-79240739 MsG0880046866.01.T01:intron 25.0%
! ATGTTTGATATTGACAGTAA+CGG - Chr8:79241521-79241540 MsG0880046866.01.T01:CDS 25.0%
! ATTGAATACTAGGAATATGA+AGG - Chr8:79240730-79240749 MsG0880046866.01.T01:intron 25.0%
! TATTAGTGGTTAATGTGTTA+AGG - Chr8:79240799-79240818 MsG0880046866.01.T01:intron 25.0%
! TTCAGTTATGGAAAAGTTAA+TGG - Chr8:79242328-79242347 MsG0880046866.01.T01:intron 25.0%
! TTGAATACTAGGAATATGAA+GGG - Chr8:79240731-79240750 MsG0880046866.01.T01:intron 25.0%
!! AACTTTTCCATAACTGAATA+TGG + Chr8:79242326-79242345 None:intergenic 25.0%
!! AAGAGCATAAAAAATTCAGA+AGG + Chr8:79241279-79241298 None:intergenic 25.0%
!! ATGCAAACTACATTAAGTTT+TGG - Chr8:79241588-79241607 MsG0880046866.01.T01:CDS 25.0%
!! ATTCTTTTGTCTCTTATATG+TGG + Chr8:79242241-79242260 None:intergenic 25.0%
!! TAGTTAGATTCTGTGTTATT+AGG - Chr8:79241967-79241986 MsG0880046866.01.T01:intron 25.0%
!!! GAGATTTTGAGTATTTTCTT+AGG - Chr8:79240276-79240295 MsG0880046866.01.T01:CDS 25.0%
!!! GAGTATTTTTTTGGAAAAGA+TGG - Chr8:79241794-79241813 MsG0880046866.01.T01:intron 25.0%
!!! GTATTAAAATTGCTTTTTGG+GGG - Chr8:79240584-79240603 MsG0880046866.01.T01:CDS 25.0%
AAATCCAAGTTTCTCTTCAA+TGG - Chr8:79240443-79240462 MsG0880046866.01.T01:CDS 30.0%
AGACAAAAGAATTACGTTTG+AGG - Chr8:79242249-79242268 MsG0880046866.01.T01:intron 30.0%
AGTGACAAAAAATATGTACC+TGG + Chr8:79241459-79241478 None:intergenic 30.0%
ATTCAATGGTAACAATTTGC+TGG + Chr8:79241061-79241080 None:intergenic 30.0%
CAATAAAAGAGGAACCATTT+CGG - Chr8:79242126-79242145 MsG0880046866.01.T01:intron 30.0%
CACTATGATCACAATAAAAG+AGG - Chr8:79242115-79242134 MsG0880046866.01.T01:intron 30.0%
CTCTTTGACACAAATAATGA+TGG - Chr8:79241294-79241313 MsG0880046866.01.T01:CDS 30.0%
TAATCACATAAACAAACTGC+TGG - Chr8:79242189-79242208 MsG0880046866.01.T01:intron 30.0%
TAGCATAATCAGAGAAAGAA+TGG + Chr8:79240391-79240410 None:intergenic 30.0%
TCATATTTCTCATGACAAAC+AGG + Chr8:79241372-79241391 None:intergenic 30.0%
TGCAACTTCATCAATTTCAT+GGG + Chr8:79240547-79240566 None:intergenic 30.0%
TGGAAAAGTTAATGGAGTAT+TGG - Chr8:79242336-79242355 MsG0880046866.01.T01:intron 30.0%
TGTTTGATATTGACAGTAAC+GGG - Chr8:79241522-79241541 MsG0880046866.01.T01:CDS 30.0%
TTCTTAGGACAATAACTTCT+GGG - Chr8:79240291-79240310 MsG0880046866.01.T01:CDS 30.0%
TTGCAACTTCATCAATTTCA+TGG + Chr8:79240548-79240567 None:intergenic 30.0%
TTTCTTAGGACAATAACTTC+TGG - Chr8:79240290-79240309 MsG0880046866.01.T01:CDS 30.0%
! ACAAGATTGATTACCTTTTC+TGG + Chr8:79241000-79241019 None:intergenic 30.0%
! TTAGAGAAGGTTCTTTAAGA+GGG - Chr8:79241223-79241242 MsG0880046866.01.T01:intron 30.0%
! TTGGGAATTTGATAACATGT+TGG - Chr8:79242639-79242658 MsG0880046866.01.T01:CDS 30.0%
!! TGTTTGTTGTATTGTCAACA+GGG - Chr8:79241646-79241665 MsG0880046866.01.T01:CDS 30.0%
!! TTGTTTGTTGTATTGTCAAC+AGG - Chr8:79241645-79241664 MsG0880046866.01.T01:CDS 30.0%
!!! ATATCTTGTTTTTGGATACC+AGG - Chr8:79241438-79241457 MsG0880046866.01.T01:intron 30.0%
AAAACACCGATAGAAAATGG+CGG - Chr8:79241764-79241783 MsG0880046866.01.T01:intron 35.0%
ACATAAACAAACTGCTGGAT+AGG - Chr8:79242194-79242213 MsG0880046866.01.T01:intron 35.0%
AGACTCTACGACATAACATA+AGG - Chr8:79240159-79240178 MsG0880046866.01.T01:CDS 35.0%
CATAAACAAACTGCTGGATA+GGG - Chr8:79242195-79242214 MsG0880046866.01.T01:intron 35.0%
GGAAGAATTCAAGAAAGTGA+TGG - Chr8:79241679-79241698 MsG0880046866.01.T01:CDS 35.0%
GGTATCATGTAATGTCATGT+AGG - Chr8:79242478-79242497 MsG0880046866.01.T01:CDS 35.0%
GTGAAAACACCGATAGAAAA+TGG - Chr8:79241761-79241780 MsG0880046866.01.T01:intron 35.0%
GTTACCATTGAAGAGAAACT+TGG + Chr8:79240450-79240469 None:intergenic 35.0%
GTTAGAGAAGGTTCTTTAAG+AGG - Chr8:79241222-79241241 MsG0880046866.01.T01:intron 35.0%
TAACTTCTGACATTCACGAA+AGG + Chr8:79241565-79241584 None:intergenic 35.0%
TGTAATGTCATGTAGGTATG+CGG - Chr8:79242485-79242504 MsG0880046866.01.T01:CDS 35.0%
TTTAAAAGCCACTGAAAAGC+TGG + Chr8:79241501-79241520 None:intergenic 35.0%
TTTCTCTGATTATGCTACTG+AGG - Chr8:79240394-79240413 MsG0880046866.01.T01:intron 35.0%
! AGATTGATTACCTTTTCTGG+AGG + Chr8:79240997-79241016 None:intergenic 35.0%
! ATGTTGGTTGAACTGTGTAA+AGG - Chr8:79242655-79242674 MsG0880046866.01.T01:CDS 35.0%
! TAGAGAAGGTTCTTTAAGAG+GGG - Chr8:79241224-79241243 MsG0880046866.01.T01:intron 35.0%
! TAGGAATATGAAGGGTATGA+TGG - Chr8:79240739-79240758 MsG0880046866.01.T01:intron 35.0%
! TGTTGGTTGAACTGTGTAAA+GGG - Chr8:79242656-79242675 MsG0880046866.01.T01:CDS 35.0%
!! ATTTCCTCACGTTTTGGATT+TGG - Chr8:79242620-79242639 MsG0880046866.01.T01:CDS 35.0%
!! TTTCCTCACGTTTTGGATTT+GGG - Chr8:79242621-79242640 MsG0880046866.01.T01:CDS 35.0%
!!! GGTCTCTTGGAGTATTTTTT+TGG - Chr8:79241785-79241804 MsG0880046866.01.T01:intron 35.0%
!!! TGATGGACTCATTTCTTTTG+CGG - Chr8:79241311-79241330 MsG0880046866.01.T01:CDS 35.0%
!!! TTGGCCTTCAGTTTTATTGA+TGG - Chr8:79241607-79241626 MsG0880046866.01.T01:CDS 35.0%
AGGAGGAAATACAGGAACAA+TGG + Chr8:79241187-79241206 None:intergenic 40.0%
ATGCGATCTCAAAACAGACA+AGG - Chr8:79241707-79241726 MsG0880046866.01.T01:intron 40.0%
ATTCCCAAATCCAAAACGTG+AGG + Chr8:79242627-79242646 None:intergenic 40.0%
CAAGGATAGTGCAAAATCCT+TGG + Chr8:79242152-79242171 None:intergenic 40.0%
CGAAAACCTGGAATCAAACA+AGG + Chr8:79241098-79241117 None:intergenic 40.0%
CTAACACGTCTTGATTCAGA+AGG + Chr8:79241207-79241226 None:intergenic 40.0%
GAATCAAGACGTGTTAGAGA+AGG - Chr8:79241210-79241229 MsG0880046866.01.T01:intron 40.0%
GATTCAGAAGGAGGAAATAC+AGG + Chr8:79241195-79241214 None:intergenic 40.0%
TCGAGTACTTTGCATCGAAT+CGG - Chr8:79241115-79241134 MsG0880046866.01.T01:CDS 40.0%
TCTCTGGCCATATTCAGTTA+TGG - Chr8:79242316-79242335 MsG0880046866.01.T01:intron 40.0%
TCTGACATTCACGAAAGGAA+AGG + Chr8:79241560-79241579 None:intergenic 40.0%
TCTTTGATGCTAACCGTGAT+GGG - Chr8:79242549-79242568 MsG0880046866.01.T01:CDS 40.0%
TGACCAATACCAAAAGCCTA+AGG + Chr8:79240336-79240355 None:intergenic 40.0%
TGCGATCTCAAAACAGACAA+GGG - Chr8:79241708-79241727 MsG0880046866.01.T01:intron 40.0%
TGGAAAGAGTTATTAGCACC+AGG + Chr8:79240371-79240390 None:intergenic 40.0%
TGGTCATCTTTATCTTCTCC+TGG - Chr8:79240350-79240369 MsG0880046866.01.T01:intron 40.0%
TGTCAACAGGGAAATAGACA+TGG - Chr8:79241658-79241677 MsG0880046866.01.T01:CDS 40.0%
TGTTATGTCGTAGAGTCTGT+TGG + Chr8:79240157-79240176 None:intergenic 40.0%
! ATGAAGGGTATGATGGAAGT+AGG - Chr8:79240746-79240765 MsG0880046866.01.T01:intron 40.0%
! ATGACACCTTGTTTGATTCC+AGG - Chr8:79241089-79241108 MsG0880046866.01.T01:CDS 40.0%
! ATGCAAAGTACTCGAAAACC+TGG + Chr8:79241110-79241129 None:intergenic 40.0%
! CAAGGATTTTGCACTATCCT+TGG - Chr8:79242150-79242169 MsG0880046866.01.T01:intron 40.0%
! GAAGACATTTCCTCACGTTT+TGG - Chr8:79242614-79242633 MsG0880046866.01.T01:CDS 40.0%
! TGAGGAGTTCAAAGCTTTTG+CGG - Chr8:79242267-79242286 MsG0880046866.01.T01:intron 40.0%
! TGCTAGCTTCTTAGGACTTA+GGG - Chr8:79240689-79240708 MsG0880046866.01.T01:CDS 40.0%
! TTGCTAGCTTCTTAGGACTT+AGG - Chr8:79240688-79240707 MsG0880046866.01.T01:CDS 40.0%
! TTTTCAAAGAGCAGCATCTC+AGG - Chr8:79242369-79242388 MsG0880046866.01.T01:CDS 40.0%
!! AAGAGACCGCCATTTTCTAT+CGG + Chr8:79241773-79241792 None:intergenic 40.0%
!! GATAGACTTGCTAGCTTCTT+AGG - Chr8:79240681-79240700 MsG0880046866.01.T01:CDS 40.0%
AAAGATGCTGCAAGACCATG+AGG + Chr8:79241895-79241914 None:intergenic 45.0%
AATGTCTGCAGATGCAACCA+AGG + Chr8:79242170-79242189 None:intergenic 45.0%
ACACGTCTTGATTCAGAAGG+AGG + Chr8:79241204-79241223 None:intergenic 45.0%
ACTGAATATGGCCAGAGAGA+AGG + Chr8:79242314-79242333 None:intergenic 45.0%
CATTCACGAAAGGAAAGGAG+AGG + Chr8:79241555-79241574 None:intergenic 45.0%
CCAATACCAAAAGCCTAAGG+TGG + Chr8:79240333-79240352 None:intergenic 45.0%
CCTTTCATCACCACCATTTC+CGG + Chr8:79240252-79240271 None:intergenic 45.0%
CTTGCAAAGTCCTCCAGAAA+AGG - Chr8:79240984-79241003 MsG0880046866.01.T01:CDS 45.0%
GATAGAAAATGGCGGTCTCT+TGG - Chr8:79241772-79241791 MsG0880046866.01.T01:intron 45.0%
GCGATCTCAAAACAGACAAG+GGG - Chr8:79241709-79241728 MsG0880046866.01.T01:intron 45.0%
GTCTTTGATGCTAACCGTGA+TGG - Chr8:79242548-79242567 MsG0880046866.01.T01:CDS 45.0%
TCATAAAAACCTCGCCACCA+GGG + Chr8:79241143-79241162 None:intergenic 45.0%
TGCAAAATCCTTGGCCGAAA+TGG + Chr8:79242143-79242162 None:intergenic 45.0%
TTAAGAGGGGAACAGTTTCC+CGG - Chr8:79241237-79241256 MsG0880046866.01.T01:intron 45.0%
TTGCACTTAAGCTCCCATCA+CGG + Chr8:79242565-79242584 None:intergenic 45.0%
! ACCAGAATCCAGCTTTTCAG+TGG - Chr8:79241490-79241509 MsG0880046866.01.T01:CDS 45.0%
! CCACCTTAGGCTTTTGGTAT+TGG - Chr8:79240330-79240349 MsG0880046866.01.T01:intron 45.0%
! CGGAAATGGTGGTGATGAAA+GGG - Chr8:79240250-79240269 MsG0880046866.01.T01:CDS 45.0%
! CGTTGTGATTGGCTACACAA+CGG + Chr8:79240185-79240204 None:intergenic 45.0%
!! GACAATAACTTCTGGGACTG+TGG - Chr8:79240298-79240317 MsG0880046866.01.T01:intron 45.0%
AAGAGGAACCATTTCGGCCA+AGG - Chr8:79242132-79242151 MsG0880046866.01.T01:intron 50.0%
AGGATCGCATTCTAACGAGC+CGG + Chr8:79241259-79241278 None:intergenic 50.0%
ATGACGTGGTGCGTTGTGAT+TGG + Chr8:79240196-79240215 None:intergenic 50.0%
ATGGCACGCATCAAATCTGC+AGG + Chr8:79241168-79241187 None:intergenic 50.0%
CTCCGTTGAGCTCTTTCGAT+GGG - Chr8:79240225-79240244 MsG0880046866.01.T01:CDS 50.0%
GAAGTTGCAGTCCTTCTCTC+TGG - Chr8:79242300-79242319 MsG0880046866.01.T01:intron 50.0%
GACCCATCGAAAGAGCTCAA+CGG + Chr8:79240230-79240249 None:intergenic 50.0%
GCAAGACCATGAGGTTTGAG+AGG + Chr8:79241886-79241905 None:intergenic 50.0%
GCCACTGAAAAGCTGGATTC+TGG + Chr8:79241494-79241513 None:intergenic 50.0%
GTCATAAAAACCTCGCCACC+AGG + Chr8:79241144-79241163 None:intergenic 50.0%
TCTCCGTTGAGCTCTTTCGA+TGG - Chr8:79240224-79240243 MsG0880046866.01.T01:CDS 50.0%
TCTTTCGATGGGTCCGGAAA+TGG - Chr8:79240236-79240255 MsG0880046866.01.T01:CDS 50.0%
TGTGAGCCTCTCAAACCTCA+TGG - Chr8:79241877-79241896 MsG0880046866.01.T01:intron 50.0%
TTGAGCTCTTTCGATGGGTC+CGG - Chr8:79240230-79240249 MsG0880046866.01.T01:CDS 50.0%
TTTGCATCGAATCGGATCCC+TGG - Chr8:79241123-79241142 MsG0880046866.01.T01:CDS 50.0%
! CCGGAAATGGTGGTGATGAA+AGG - Chr8:79240249-79240268 MsG0880046866.01.T01:CDS 50.0%
! TTGGGACCACCTTAGGCTTT+TGG - Chr8:79240324-79240343 MsG0880046866.01.T01:intron 50.0%
!! ACTTCTGGGACTGTGGTTGT+TGG - Chr8:79240305-79240324 MsG0880046866.01.T01:intron 50.0%
!! CTATCGGTGTTTTCACTCCG+AGG + Chr8:79241757-79241776 None:intergenic 50.0%
!! CTTCTGGGACTGTGGTTGTT+GGG - Chr8:79240306-79240325 MsG0880046866.01.T01:intron 50.0%
CAAGGGGCTAACCACAGAGA+CGG - Chr8:79241725-79241744 MsG0880046866.01.T01:intron 55.0%
CGGAGAAGAAGACGATGACG+TGG + Chr8:79240210-79240229 None:intergenic 55.0%
GGATCGCATTCTAACGAGCC+GGG + Chr8:79241258-79241277 None:intergenic 55.0%
GTGGTTGTTGGGACCACCTT+AGG - Chr8:79240317-79240336 MsG0880046866.01.T01:intron 55.0%
TTCGATGGGTCCGGAAATGG+TGG - Chr8:79240239-79240258 MsG0880046866.01.T01:CDS 55.0%
GCATCGAATCGGATCCCTGG+TGG - Chr8:79241126-79241145 MsG0880046866.01.T01:CDS 60.0%
CACAGAGACGGACGACGCCT+CGG - Chr8:79241737-79241756 MsG0880046866.01.T01:intron 65.0%
! GAATCGGATCCCTGGTGGCG+AGG - Chr8:79241131-79241150 MsG0880046866.01.T01:intron 65.0%
!! CGAGGCGTCGTCCGTCTCTG+TGG + Chr8:79241739-79241758 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 79240128 79242688 79240128 ID=MsG0880046866.01;Name=MsG0880046866.01
Chr8 mRNA 79240128 79242688 79240128 ID=MsG0880046866.01.T01;Parent=MsG0880046866.01;Name=MsG0880046866.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|7|0|469
Chr8 exon 79242352 79242688 79242352 ID=MsG0880046866.01.T01:exon:34266;Parent=MsG0880046866.01.T01
Chr8 exon 79241811 79241878 79241811 ID=MsG0880046866.01.T01:exon:34265;Parent=MsG0880046866.01.T01
Chr8 exon 79241482 79241705 79241482 ID=MsG0880046866.01.T01:exon:34264;Parent=MsG0880046866.01.T01
Chr8 exon 79241273 79241356 79241273 ID=MsG0880046866.01.T01:exon:34263;Parent=MsG0880046866.01.T01
Chr8 exon 79240939 79241149 79240939 ID=MsG0880046866.01.T01:exon:34262;Parent=MsG0880046866.01.T01
Chr8 exon 79240426 79240722 79240426 ID=MsG0880046866.01.T01:exon:34261;Parent=MsG0880046866.01.T01
Chr8 exon 79240128 79240316 79240128 ID=MsG0880046866.01.T01:exon:34260;Parent=MsG0880046866.01.T01
Chr8 CDS 79242352 79242688 79242352 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Chr8 CDS 79241811 79241878 79241811 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Chr8 CDS 79241482 79241705 79241482 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Chr8 CDS 79241273 79241356 79241273 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Chr8 CDS 79240939 79241149 79240939 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Chr8 CDS 79240426 79240722 79240426 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Chr8 CDS 79240128 79240316 79240128 ID=MsG0880046866.01.T01:cds;Parent=MsG0880046866.01.T01
Gene Sequence

>MsG0880046866.01.T01

ATGTTGTTTTCTTGGGGAAGAAGATTCCAACAGACTCTACGACATAACATAAGGCCGTTGTGTAGCCAATCACAACGCACCACGTCATCGTCTTCTTCTCCGTTGAGCTCTTTCGATGGGTCCGGAAATGGTGGTGATGAAAGGGTTAGAGATTTTGAGTATTTTCTTAGGACAATAACTTCTGGGACTGTGGTTGTTGGGACCACCTTAGGCTTTTGGTATTGGTCATCTTTATCTTCTCCTGGTGCTAATAACTCTTTCCATTCTTTCTCTGATTATGCTACTGAGGATCAGTTTCAACAAAACTATCAAAATAAATCCAAGTTTCTCTTCAATGATAGTTATCGAAGAAGAGTATTCTTCAACTACGAAAAACGTCTTCGCTTGCAAAGTCCTCCAGAAAAGGTTTTCGAGTACTTTGCATCGAATCGGATCCCTGGTGGCGAGGTTTTTATGACACCTGCAGATTTGATGCGTGCCATTGTTCCTGTATTTCCTCCTTCTGAATCAAGACGTGTTAGAGAAGGTTCTTTAAGAGGGGAACAGTTTCCCGGCTCGTTAGAATGCGATCCTTCTGAATTTTTTATGCTCTTTGACACAAATAATGATGGACTCATTTCTTTTGCGGAGTACATATTTTTTGTCACTCTTCTCAGCATACCAGAATCCAGCTTTTCAGTGGCTTTTAAAATGTTTGATATTGACAGTAACGGGGAAATAGACATGGAAGAATTCAAGAAAGTGATGGCGTTGATGCGATCTCAAAACAGACAAGGGGCTAACCACAGAGACGGACGACGCCTCGGAGTGAAAACACCGATAGAAAATGGCGGTCTCTTGGAGTATTTTTTTGGAAAAGATGGAAAAGATTGCTTACAACATGACAAATTTGTTCAATTCTTAAGACAACTGCATGATGAGTATATCTTGAGATTAGAATTTTCTCACTATGATCACAATAAAAGAGGAACCATTTCGGCCAAGGATTTTGCACTATCCTTGGTTGCATCTGCAGACATTAATCACATAAACAAACTGCTGGATAGGGTCGACGAATTAGACAATGATCCACATATAAGAGACAAAAGAATTACGTTTGAGGAGTTCAAAGCTTTTGCGGAATTGCGCAAGAAGTTGCAGTCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGGCAAAAAATGATTTTCAAAGAGCAGCATCTCAGGTATGCGGCGTCGATATTACAGAGAATGTACTTGACATAATTTTTCATGTCTTTGATGCTAACCGTGATGGGAGCTTAAGTGCAAGCGAGTTTGTTCGAGTTATACAAAGAAGAGAAGACATTTCCTCACGTTTTGGATTTGGGAATTTGATAACATGTTGGTTGAACTGTGTAAAGGGTAAATGTTAA

Protein sequence

>MsG0880046866.01.T01

MLFSWGRRFQQTLRHNIRPLCSQSQRTTSSSSSPLSSFDGSGNGGDERVRDFEYFLRTITSGTVVVGTTLGFWYWSSLSSPGANNSFHSFSDYATEDQFQQNYQNKSKFLFNDSYRRRVFFNYEKRLRLQSPPEKVFEYFASNRIPGGEVFMTPADLMRAIVPVFPPSESRRVREGSLRGEQFPGSLECDPSEFFMLFDTNNDGLISFAEYIFFVTLLSIPESSFSVAFKMFDIDSNGEIDMEEFKKVMALMRSQNRQGANHRDGRRLGVKTPIENGGLLEYFFGKDGKDCLQHDKFVQFLRQLHDEYILRLEFSHYDHNKRGTISAKDFALSLVASADINHINKLLDRVDELDNDPHIRDKRITFEEFKAFAELRKKLQSFSLAIFSYGKVNGVLAKNDFQRAASQVCGVDITENVLDIIFHVFDANRDGSLSASEFVRVIQRREDISSRFGFGNLITCWLNCVKGKC*