AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020888.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020888.01.T01 MTR_4g062170 97.150 386 10 1 1 385 62 447 0.0 768
MsG0480020888.01.T01 MTR_4g062270 89.610 385 33 1 1 385 62 439 0.0 716
MsG0480020888.01.T01 MTR_4g062190 86.563 387 50 1 1 385 62 448 0.0 673
MsG0480020888.01.T01 MTR_2g096210 74.615 390 93 4 1 385 62 450 0.0 605
MsG0480020888.01.T01 MTR_1g115560 56.456 395 162 2 1 385 63 457 2.17e-169 483
MsG0480020888.01.T01 MTR_7g118170 44.444 387 193 6 1 379 153 525 5.79e-112 338
MsG0480020888.01.T01 MTR_5g056510 41.867 375 204 4 7 379 125 487 4.43e-106 322
MsG0480020888.01.T01 MTR_3g105550 41.005 378 214 3 7 379 160 533 2.47e-104 318
MsG0480020888.01.T01 MTR_1g076430 43.467 375 197 4 8 379 141 503 4.79e-104 317
MsG0480020888.01.T01 MTR_1g110930 40.800 375 208 4 7 379 125 487 5.65e-104 316
MsG0480020888.01.T01 MTR_4g070270 40.800 375 208 3 7 379 137 499 5.14e-103 314
MsG0480020888.01.T01 MTR_2g054940 42.667 375 200 4 8 379 140 502 1.09e-102 313
MsG0480020888.01.T01 MTR_7g118160 46.130 323 153 2 62 379 110 416 2.74e-102 310
MsG0480020888.01.T01 MTR_1g041085 42.133 375 202 4 8 379 147 509 1.08e-100 309
MsG0480020888.01.T01 MTR_4g054415 39.362 376 212 5 8 379 59 422 1.34e-95 293
MsG0480020888.01.T01 MTR_4g113280 40.426 376 198 5 7 379 128 480 1.80e-95 294
MsG0480020888.01.T01 MTR_4g054630 39.362 376 212 5 8 379 100 463 2.16e-95 293
MsG0480020888.01.T01 MTR_6g074880 40.426 376 208 5 8 379 102 465 4.24e-95 293
MsG0480020888.01.T01 MTR_7g081695 41.867 375 191 5 8 379 140 490 4.55e-94 298
MsG0480020888.01.T01 MTR_2g007020 40.800 375 207 4 8 379 86 448 1.00e-93 289
MsG0480020888.01.T01 MTR_2g436480 38.503 374 218 4 8 379 85 448 7.22e-90 279
MsG0480020888.01.T01 MTR_6g032965 37.958 382 220 5 3 379 12 381 2.82e-89 275
MsG0480020888.01.T01 MTR_2g013740 39.444 360 201 3 7 365 149 492 1.58e-86 272
MsG0480020888.01.T01 MTR_1g102290 37.766 376 218 7 8 379 120 483 4.62e-80 254
MsG0480020888.01.T01 MTR_3g072980 35.733 375 225 5 8 379 121 482 2.71e-76 244
MsG0480020888.01.T01 MTR_3g072940 35.733 375 225 5 8 379 121 482 2.92e-76 244
MsG0480020888.01.T01 MTR_6g051440 35.467 375 226 5 8 379 120 481 2.42e-70 229
MsG0480020888.01.T01 MTR_4g054260 37.984 258 128 5 126 379 93 322 6.72e-52 176
MsG0480020888.01.T01 MTR_4g053905 40.127 157 80 3 226 379 11 156 2.19e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020888.01.T01 AT2G28630 75.959 391 88 2 1 385 62 452 0.0 607
MsG0480020888.01.T01 AT2G28630 75.959 391 88 2 1 385 62 452 0.0 607
MsG0480020888.01.T01 AT1G07720 74.365 394 90 4 1 385 105 496 0.0 592
MsG0480020888.01.T01 AT1G07720 74.365 394 90 4 1 385 62 453 0.0 591
MsG0480020888.01.T01 AT5G04530 55.181 386 164 2 1 384 64 442 9.23e-164 468
MsG0480020888.01.T01 AT1G01120 42.597 385 199 5 4 381 156 525 8.26e-111 335
MsG0480020888.01.T01 AT2G16280 43.501 377 199 4 7 381 145 509 6.45e-107 325
MsG0480020888.01.T01 AT1G19440 42.328 378 198 5 7 379 149 511 2.95e-106 323
MsG0480020888.01.T01 AT1G25450 42.667 375 201 4 7 379 121 483 5.58e-106 322
MsG0480020888.01.T01 AT2G46720 42.328 378 201 4 7 379 97 462 3.30e-105 318
MsG0480020888.01.T01 AT4G34510 42.216 379 202 4 7 381 119 484 4.13e-104 317
MsG0480020888.01.T01 AT1G68530 41.067 375 207 4 7 379 126 488 1.85e-103 315
MsG0480020888.01.T01 AT1G04220 41.558 385 205 5 4 379 139 512 2.11e-102 313
MsG0480020888.01.T01 AT2G26640 42.216 379 204 4 4 379 134 500 2.50e-102 313
MsG0480020888.01.T01 AT5G43760 42.338 385 201 6 4 379 145 517 7.43e-101 310
MsG0480020888.01.T01 AT2G15090 40.741 378 202 6 8 379 115 476 1.65e-99 305
MsG0480020888.01.T01 AT3G10280 41.005 378 199 5 7 379 97 455 4.48e-99 303
MsG0480020888.01.T01 AT4G34250 41.645 377 200 6 8 379 123 484 4.82e-99 303
MsG0480020888.01.T01 AT4G34520 41.818 385 205 5 8 387 125 495 2.05e-98 302
MsG0480020888.01.T01 AT2G26250 38.205 390 222 4 8 379 159 547 4.79e-96 298
MsG0480020888.01.T01 AT5G49070 39.733 375 212 5 8 379 89 452 4.68e-92 285
MsG0480020888.01.T01 AT1G71160 38.005 371 215 4 11 379 88 445 2.13e-90 280
MsG0480020888.01.T01 AT3G52160 34.648 355 189 3 11 365 16 327 1.05e-73 233
MsG0480020888.01.T01 AT3G52160 34.648 355 189 3 11 365 129 440 2.45e-72 233
MsG0480020888.01.T01 AT1G68530 37.885 227 140 1 7 233 126 351 1.50e-53 182
MsG0480020888.01.T01 AT5G49070 31.897 232 157 1 1 232 82 312 1.23e-34 130

Find 69 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCTTTGTTGACAATTTA+AGG 0.088298 4:-50164445 MsG0480020888.01.T01:CDS
TTCCCTTGTTGGCAAAATTT+TGG 0.124989 4:+50164412 None:intergenic
AAGAAATAAGTTAGCACTTT+TGG 0.201713 4:-50164735 MsG0480020888.01.T01:CDS
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4:-50164052 MsG0480020888.01.T01:CDS
CGGCCTTCAAAGACGTTTCT+TGG 0.235577 4:+50165034 None:intergenic
TCATTGCCAGTGTACCAATT+TGG 0.263580 4:+50164692 None:intergenic
TAATTATCCACCAAAGTCTT+TGG 0.310010 4:-50163979 MsG0480020888.01.T01:CDS
GGTAGCTTGTGGTATGTGTT+AGG 0.324055 4:-50164143 MsG0480020888.01.T01:CDS
AACCTAAGCAATTCCCTTGT+TGG 0.324150 4:+50164401 None:intergenic
AGTCTTTGGTCAATCTTTCA+TGG 0.334744 4:-50163965 MsG0480020888.01.T01:CDS
CTCAAAGCCATTGTAAGTTC+TGG 0.351294 4:-50165079 MsG0480020888.01.T01:CDS
CAGAGTCTCTTAGTCCAAAT+TGG 0.358921 4:-50164706 MsG0480020888.01.T01:CDS
CGATGTAGTGTCATCCTTGC+TGG 0.365030 4:+50164185 None:intergenic
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4:-50164051 MsG0480020888.01.T01:CDS
AGATCCCGTCGTTCAGTGTT+GGG 0.368292 4:+50165002 None:intergenic
AGTCTTTGTTGACAATTTAA+GGG 0.369626 4:-50164444 MsG0480020888.01.T01:CDS
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4:-50164242 MsG0480020888.01.T01:CDS
TCACCATTGAATTTCAAAAC+TGG 0.383289 4:-50164296 MsG0480020888.01.T01:CDS
AGAGTCTTTATGATAAGCTT+TGG 0.385184 4:-50164083 MsG0480020888.01.T01:CDS
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4:-50164248 MsG0480020888.01.T01:CDS
AGGATGACACTACATCGTTT+TGG 0.417938 4:-50164179 MsG0480020888.01.T01:CDS
CAGAACTTACAATGGCTTTG+AGG 0.424498 4:+50165080 None:intergenic
TGCCAACAAGGGAATTGCTT+AGG 0.432387 4:-50164403 MsG0480020888.01.T01:CDS
TTACAATTGTTGCATTCAAA+AGG 0.434595 4:-50164528 MsG0480020888.01.T01:CDS
AGTTCTTCTAAGTCTTCAAC+TGG 0.436663 4:-50164338 MsG0480020888.01.T01:CDS
GCACCAAGAAACGTCTTTGA+AGG 0.447631 4:-50165037 MsG0480020888.01.T01:CDS
TGTTGGAGATGCAAATGTTT+GGG 0.458617 4:-50164015 MsG0480020888.01.T01:CDS
ACTTGCACTACAACCCATTC+CGG 0.459457 4:+50164799 None:intergenic
TGGGAAGTGATGAGAGATGT+TGG 0.470845 4:-50164032 MsG0480020888.01.T01:CDS
GAAGATGAGCAGGGTAGGCT+TGG 0.474253 4:-50164506 MsG0480020888.01.T01:CDS
GCCGGAACGGAAAAGACAAT+TGG 0.476811 4:+50164652 None:intergenic
CATTCAAAAGGAAGATGAGC+AGG 0.483405 4:-50164516 MsG0480020888.01.T01:CDS
GTGTACAATCTCACCGGAAT+GGG 0.485997 4:-50164812 MsG0480020888.01.T01:CDS
ATGTTGGAGATGCAAATGTT+TGG 0.486269 4:-50164016 MsG0480020888.01.T01:CDS
CTTTCATGGAGAAGTATAGT+TGG 0.487122 4:-50163951 MsG0480020888.01.T01:CDS
GCCATTGTAAGTTCTGGAAT+CGG 0.490745 4:-50165073 MsG0480020888.01.T01:CDS
TTTATGATAAGCTTTGGTGC+TGG 0.499750 4:-50164077 MsG0480020888.01.T01:CDS
GAAAGATTGACCAAAGACTT+TGG 0.502225 4:+50163969 None:intergenic
GTAGCTTGTGGTATGTGTTA+GGG 0.507371 4:-50164142 MsG0480020888.01.T01:CDS
TTTCATGGAGAAGTATAGTT+GGG 0.507658 4:-50163950 MsG0480020888.01.T01:CDS
GAGATCCCGTCGTTCAGTGT+TGG 0.510257 4:+50165001 None:intergenic
AGTGTACAATCTCACCGGAA+TGG 0.523311 4:-50164813 MsG0480020888.01.T01:CDS
TCAGTGTTGGGGATGATTCG+CGG 0.524299 4:+50165014 None:intergenic
GTGGTATGTGTTAGGGTACA+TGG 0.531641 4:-50164135 MsG0480020888.01.T01:CDS
CATCCCCAACACTGAACGAC+GGG 0.534315 4:-50165006 MsG0480020888.01.T01:CDS
GAATCGCGCAACCGCCGGAA+CGG 0.534316 4:+50164639 None:intergenic
CGACGATAAAGAAGGAAGAA+TGG 0.540309 4:+50164874 None:intergenic
CAAAAGAATCGCGCAACCGC+CGG 0.542437 4:+50164634 None:intergenic
ACACTTCTGCTGGTAGCTTG+TGG 0.556818 4:-50164154 MsG0480020888.01.T01:CDS
GAACGACGGGATCTCTGAGA+TGG 0.560538 4:-50164993 MsG0480020888.01.T01:CDS
ATGATTCGCGACGATAAAGA+AGG 0.561187 4:+50164866 None:intergenic
GATCCCGTCGTTCAGTGTTG+GGG 0.565462 4:+50165003 None:intergenic
CTTAGTCCAAATTGGTACAC+TGG 0.575705 4:-50164698 MsG0480020888.01.T01:CDS
AAAAGGAAGATGAGCAGGGT+AGG 0.584974 4:-50164511 MsG0480020888.01.T01:CDS
TCTTCTAAGTCTTCAACTGG+TGG 0.587214 4:-50164335 MsG0480020888.01.T01:CDS
TAGTTGGGTCAATGAAGTTG+AGG 0.590238 4:-50163935 MsG0480020888.01.T01:CDS
GCCGATTCCAGAACTTACAA+TGG 0.592710 4:+50165072 None:intergenic
GGGAAATCGCTGATCTAGCA+AGG 0.595724 4:+50164939 None:intergenic
ACAAGAACGTCAATTTCTGA+AGG 0.596067 4:+50164917 None:intergenic
AATATGATCTTGAGCCAGCA+AGG 0.598452 4:-50164199 MsG0480020888.01.T01:CDS
CAAGAACGTCAATTTCTGAA+GGG 0.603622 4:+50164918 None:intergenic
AAGAACGTCAATTTCTGAAG+GGG 0.627584 4:+50164919 None:intergenic
AACGGAAAAGACAATTGGCT+AGG 0.628055 4:+50164657 None:intergenic
AGATTGACCAAAGACTTTGG+TGG 0.631134 4:+50163972 None:intergenic
AAGAGTCTTCTCTTGCGCCG+TGG 0.637122 4:+50164549 None:intergenic
GTAAAAGTGTACAATCTCAC+CGG 0.655315 4:-50164818 MsG0480020888.01.T01:CDS
TCATCCCCAACACTGAACGA+CGG 0.690414 4:-50165007 MsG0480020888.01.T01:CDS
ATTCAAAAGGAAGATGAGCA+GGG 0.694442 4:-50164515 MsG0480020888.01.T01:CDS
TGTTTAGTACGAACGCACCA+CGG 0.710347 4:-50164566 MsG0480020888.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGTCTTTGTTGACAATTTA+AGG - Chr4:50164590-50164609 MsG0480020888.01.T01:CDS 25.0%
! AGTCTTTGTTGACAATTTAA+GGG - Chr4:50164591-50164610 MsG0480020888.01.T01:CDS 25.0%
! TTACAATTGTTGCATTCAAA+AGG - Chr4:50164507-50164526 MsG0480020888.01.T01:CDS 25.0%
!! AAGAAATAAGTTAGCACTTT+TGG - Chr4:50164300-50164319 MsG0480020888.01.T01:CDS 25.0%
AGAGTCTTTATGATAAGCTT+TGG - Chr4:50164952-50164971 MsG0480020888.01.T01:CDS 30.0%
CAAATGCAATAGTTGCTTAT+GGG - Chr4:50164984-50165003 MsG0480020888.01.T01:CDS 30.0%
GCAAAAAAGAGGCTAAAAAA+AGG - Chr4:50164925-50164944 MsG0480020888.01.T01:CDS 30.0%
TAATTATCCACCAAAGTCTT+TGG - Chr4:50165056-50165075 MsG0480020888.01.T01:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG - Chr4:50164983-50165002 MsG0480020888.01.T01:CDS 30.0%
TCACCATTGAATTTCAAAAC+TGG - Chr4:50164739-50164758 MsG0480020888.01.T01:CDS 30.0%
! TTTCATGGAGAAGTATAGTT+GGG - Chr4:50165085-50165104 MsG0480020888.01.T01:CDS 30.0%
!!! ACACCAGTTTTGAAATTCAA+TGG + Chr4:50164745-50164764 None:intergenic 30.0%
!!! CAGTATGCTTCTGTTTTTTA+AGG + Chr4:50164440-50164459 None:intergenic 30.0%
AAAGCAGTGATTGATGGAAT+TGG - Chr4:50164793-50164812 MsG0480020888.01.T01:CDS 35.0%
ACAAGAACGTCAATTTCTGA+AGG + Chr4:50164121-50164140 None:intergenic 35.0%
AGTCTTTGGTCAATCTTTCA+TGG - Chr4:50165070-50165089 MsG0480020888.01.T01:CDS 35.0%
AGTTCTTCTAAGTCTTCAAC+TGG - Chr4:50164697-50164716 MsG0480020888.01.T01:CDS 35.0%
ATGTTGGAGATGCAAATGTT+TGG - Chr4:50165019-50165038 MsG0480020888.01.T01:CDS 35.0%
ATTCAAAAGGAAGATGAGCA+GGG - Chr4:50164520-50164539 MsG0480020888.01.T01:CDS 35.0%
CAAGAACGTCAATTTCTGAA+GGG + Chr4:50164120-50164139 None:intergenic 35.0%
GAAAGATTGACCAAAGACTT+TGG + Chr4:50165069-50165088 None:intergenic 35.0%
TGTTGGAGATGCAAATGTTT+GGG - Chr4:50165020-50165039 MsG0480020888.01.T01:CDS 35.0%
! AAGAACGTCAATTTCTGAAG+GGG + Chr4:50164119-50164138 None:intergenic 35.0%
! ACCCAAAATTTTGCCAACAA+GGG - Chr4:50164621-50164640 MsG0480020888.01.T01:CDS 35.0%
! CTTTCATGGAGAAGTATAGT+TGG - Chr4:50165084-50165103 MsG0480020888.01.T01:CDS 35.0%
! GTAAAAGTGTACAATCTCAC+CGG - Chr4:50164217-50164236 MsG0480020888.01.T01:CDS 35.0%
! TCCCTTGTTGGCAAAATTTT+GGG + Chr4:50164625-50164644 None:intergenic 35.0%
! TTCCCTTGTTGGCAAAATTT+TGG + Chr4:50164626-50164645 None:intergenic 35.0%
! TTTATGATAAGCTTTGGTGC+TGG - Chr4:50164958-50164977 MsG0480020888.01.T01:CDS 35.0%
!! GTAGGCTTGGTTTTCATTTA+GGG - Chr4:50164542-50164561 MsG0480020888.01.T01:CDS 35.0%
!!! AAGACTTTTGTTGCTGCTTT+TGG + Chr4:50164577-50164596 None:intergenic 35.0%
!!! AGACTTTTGTTGCTGCTTTT+GGG + Chr4:50164576-50164595 None:intergenic 35.0%
AACCTAAGCAATTCCCTTGT+TGG + Chr4:50164637-50164656 None:intergenic 40.0%
AACGGAAAAGACAATTGGCT+AGG + Chr4:50164381-50164400 None:intergenic 40.0%
AATATGATCTTGAGCCAGCA+AGG - Chr4:50164836-50164855 MsG0480020888.01.T01:CDS 40.0%
AGATTGACCAAAGACTTTGG+TGG + Chr4:50165066-50165085 None:intergenic 40.0%
ATGATTCGCGACGATAAAGA+AGG + Chr4:50164172-50164191 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG - Chr4:50164329-50164348 MsG0480020888.01.T01:CDS 40.0%
CATTCAAAAGGAAGATGAGC+AGG - Chr4:50164519-50164538 MsG0480020888.01.T01:CDS 40.0%
CGACGATAAAGAAGGAAGAA+TGG + Chr4:50164164-50164183 None:intergenic 40.0%
CTCAAAGCCATTGTAAGTTC+TGG - Chr4:50163956-50163975 MsG0480020888.01.T01:CDS 40.0%
CTTAGTCCAAATTGGTACAC+TGG - Chr4:50164337-50164356 MsG0480020888.01.T01:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG - Chr4:50164914-50164933 MsG0480020888.01.T01:CDS 40.0%
TAGTTGGGTCAATGAAGTTG+AGG - Chr4:50165100-50165119 MsG0480020888.01.T01:CDS 40.0%
TCATTGCCAGTGTACCAATT+TGG + Chr4:50164346-50164365 None:intergenic 40.0%
TCTTCTAAGTCTTCAACTGG+TGG - Chr4:50164700-50164719 MsG0480020888.01.T01:CDS 40.0%
! AGGATGACACTACATCGTTT+TGG - Chr4:50164856-50164875 MsG0480020888.01.T01:CDS 40.0%
! CACCCAAAATTTTGCCAACA+AGG - Chr4:50164620-50164639 MsG0480020888.01.T01:CDS 40.0%
! CAGAACTTACAATGGCTTTG+AGG + Chr4:50163958-50163977 None:intergenic 40.0%
! CGTCGTGTCTCATTTTGTAA+CGG + Chr4:50164198-50164217 None:intergenic 40.0%
! GTAGCTTGTGGTATGTGTTA+GGG - Chr4:50164893-50164912 MsG0480020888.01.T01:CDS 40.0%
!! GATCATTTTTGCCTCCATAC+AGG - Chr4:50164766-50164785 MsG0480020888.01.T01:CDS 40.0%
!! GCCATTGTAAGTTCTGGAAT+CGG - Chr4:50163962-50163981 MsG0480020888.01.T01:CDS 40.0%
!! GGTAGGCTTGGTTTTCATTT+AGG - Chr4:50164541-50164560 MsG0480020888.01.T01:CDS 40.0%
AAAAGGAAGATGAGCAGGGT+AGG - Chr4:50164524-50164543 MsG0480020888.01.T01:CDS 45.0%
ACTTGCACTACAACCCATTC+CGG + Chr4:50164239-50164258 None:intergenic 45.0%
AGTGTACAATCTCACCGGAA+TGG - Chr4:50164222-50164241 MsG0480020888.01.T01:CDS 45.0%
GCACCAAGAAACGTCTTTGA+AGG - Chr4:50163998-50164017 MsG0480020888.01.T01:CDS 45.0%
GGAGGAAAAGCAGTGATTGA+TGG - Chr4:50164787-50164806 MsG0480020888.01.T01:CDS 45.0%
GTGGTATGTGTTAGGGTACA+TGG - Chr4:50164900-50164919 MsG0480020888.01.T01:CDS 45.0%
GTGTACAATCTCACCGGAAT+GGG - Chr4:50164223-50164242 MsG0480020888.01.T01:CDS 45.0%
TGCCAACAAGGGAATTGCTT+AGG - Chr4:50164632-50164651 MsG0480020888.01.T01:CDS 45.0%
TGGGAAGTGATGAGAGATGT+TGG - Chr4:50165003-50165022 MsG0480020888.01.T01:CDS 45.0%
TGTTTAGTACGAACGCACCA+CGG - Chr4:50164469-50164488 MsG0480020888.01.T01:CDS 45.0%
! AATTGTCTTTTCCGTTCCGG+CGG - Chr4:50164385-50164404 MsG0480020888.01.T01:CDS 45.0%
! CATTTTTGCCTCCATACAGG+AGG - Chr4:50164769-50164788 MsG0480020888.01.T01:CDS 45.0%
! GCCAATTGTCTTTTCCGTTC+CGG - Chr4:50164382-50164401 MsG0480020888.01.T01:CDS 45.0%
! GCCGATTCCAGAACTTACAA+TGG + Chr4:50163966-50163985 None:intergenic 45.0%
! GGTAGCTTGTGGTATGTGTT+AGG - Chr4:50164892-50164911 MsG0480020888.01.T01:CDS 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG - Chr4:50164871-50164890 MsG0480020888.01.T01:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG + Chr4:50164783-50164802 None:intergenic 45.0%
ACACTTCTGCTGGTAGCTTG+TGG - Chr4:50164881-50164900 MsG0480020888.01.T01:CDS 50.0%
AGATCCCGTCGTTCAGTGTT+GGG + Chr4:50164036-50164055 None:intergenic 50.0%
CGATGTAGTGTCATCCTTGC+TGG + Chr4:50164853-50164872 None:intergenic 50.0%
CGGCCTTCAAAGACGTTTCT+TGG + Chr4:50164004-50164023 None:intergenic 50.0%
GCCGGAACGGAAAAGACAAT+TGG + Chr4:50164386-50164405 None:intergenic 50.0%
GGGAAATCGCTGATCTAGCA+AGG + Chr4:50164099-50164118 None:intergenic 50.0%
TCATCCCCAACACTGAACGA+CGG - Chr4:50164028-50164047 MsG0480020888.01.T01:CDS 50.0%
! TCAGTGTTGGGGATGATTCG+CGG + Chr4:50164024-50164043 None:intergenic 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG + Chr4:50164780-50164799 None:intergenic 50.0%
AAGAGTCTTCTCTTGCGCCG+TGG + Chr4:50164489-50164508 None:intergenic 55.0%
CAAAAGAATCGCGCAACCGC+CGG + Chr4:50164404-50164423 None:intergenic 55.0%
CATCCCCAACACTGAACGAC+GGG - Chr4:50164029-50164048 MsG0480020888.01.T01:CDS 55.0%
GAAGATGAGCAGGGTAGGCT+TGG - Chr4:50164529-50164548 MsG0480020888.01.T01:CDS 55.0%
GAGATCCCGTCGTTCAGTGT+TGG + Chr4:50164037-50164056 None:intergenic 55.0%
GATCCCGTCGTTCAGTGTTG+GGG + Chr4:50164035-50164054 None:intergenic 55.0%
! GAACGACGGGATCTCTGAGA+TGG - Chr4:50164042-50164061 MsG0480020888.01.T01:CDS 55.0%
GAATCGCGCAACCGCCGGAA+CGG + Chr4:50164399-50164418 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 50163929 50165128 50163929 ID=MsG0480020888.01;Name=MsG0480020888.01
Chr4 mRNA 50163929 50165128 50163929 ID=MsG0480020888.01.T01;Parent=MsG0480020888.01;Name=MsG0480020888.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|399
Chr4 exon 50163929 50165128 50163929 ID=MsG0480020888.01.T01:exon:282;Parent=MsG0480020888.01.T01
Chr4 CDS 50163929 50165128 50163929 ID=MsG0480020888.01.T01:cds;Parent=MsG0480020888.01.T01
Gene Sequence

>MsG0480020888.01.T01

TTGGGTATAGATGAGTACAAATTTCTCCTCAAAGCCATTGTAAGTTCTGGAATCGGCGAGCAAACTTACGCACCAAGAAACGTCTTTGAAGGCCGCGAATCATCCCCAACACTGAACGACGGGATCTCTGAGATGGAAGAGTTTTTCAACGACAGCATTGCAAAACTCCTTGCTAGATCAGCGATTTCCCCTTCAGAAATTGACGTTCTTGTCGTCAACATCTCAATGCTCGCCATTCTTCCTTCTTTATCGTCGCGAATCATTAACCGTTACAAAATGAGACACGACGTAAAAGTGTACAATCTCACCGGAATGGGTTGTAGTGCAAGTCTTATTTCATTAGACATTGTTAAAAACATTTTCAAATCACAAAGAAATAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTACACTGGCAATGATAGATCAATGATCCTAGCCAATTGTCTTTTCCGTTCCGGCGGTTGCGCGATTCTTTTGACAAATAAAAGATCCTTAAAAAACAGAAGCATACTGAAATTGAAGTGTTTAGTACGAACGCACCACGGCGCAAGAGAAGACTCTTACAATTGTTGCATTCAAAAGGAAGATGAGCAGGGTAGGCTTGGTTTTCATTTAGGGAAAACTCTCCCAAAAGCAGCAACAAAAGTCTTTGTTGACAATTTAAGGGTAATTTCACCCAAAATTTTGCCAACAAGGGAATTGCTTAGGTTTCTTCTTGTGTTACTTTTCAAGAAACTTAAAATAGCTACTAGTTCTTCTAAGTCTTCAACTGGTGGAACAATATCTACAAAATCACCATTGAATTTCAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAATGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGGATGACACTACATCGTTTTGGTAACACTTCTGCTGGTAGCTTGTGGTATGTGTTAGGGTACATGGAAGCAAAAAAGAGGCTAAAAAAAGGTGATAGAGTCTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAGAGATGTTGGAGATGCAAATGTTTGGGAAGATTGTATTGATAATTATCCACCAAAGTCTTTGGTCAATCTTTCATGGAGAAGTATAGTTGGGTCAATGAAGTTGAGGATGTAA

Protein sequence

>MsG0480020888.01.T01

LGIDEYKFLLKAIVSSGIGEQTYAPRNVFEGRESSPTLNDGISEMEEFFNDSIAKLLARSAISPSEIDVLVVNISMLAILPSLSSRIINRYKMRHDVKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKNRSILKLKCLVRTHHGAREDSYNCCIQKEDEQGRLGFHLGKTLPKAATKVFVDNLRVISPKILPTRELLRFLLVLLFKKLKIATSSSKSSTGGTISTKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSAGSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWEVMRDVGDANVWEDCIDNYPPKSLVNLSWRSIVGSMKLRM*