AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006133.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006133.01.T01 MTR_1g115220 88.837 215 15 1 2 216 5 210 9.90e-124 349
MsG0180006133.01.T01 MTR_8g018100 72.951 122 15 1 19 140 144 247 3.03e-50 164
MsG0180006133.01.T01 MTR_3g115580 62.338 77 29 0 86 162 32 108 1.70e-25 97.4
MsG0180006133.01.T01 MTR_5g024180 45.745 94 47 1 83 172 16 109 1.24e-21 87.0
MsG0180006133.01.T01 MTR_7g068280 56.164 73 32 0 95 167 47 119 1.49e-21 87.8
MsG0180006133.01.T01 MTR_8g073345 41.322 121 51 2 83 198 16 121 6.78e-21 84.7
MsG0180006133.01.T01 MTR_8g073345 41.322 121 51 2 83 198 16 121 7.69e-21 85.1
MsG0180006133.01.T01 MTR_4g094622 50.000 74 37 0 89 162 54 127 2.58e-18 78.6
MsG0180006133.01.T01 MTR_7g082820 51.515 66 31 1 95 160 9 73 2.79e-15 70.5
MsG0180006133.01.T01 MTR_0191s0020 27.429 175 91 6 2 176 7 145 4.28e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006133.01.T01 AT5G23420 54.217 166 66 5 4 162 15 177 3.28e-43 145
MsG0180006133.01.T01 AT4G35570 57.746 71 30 0 90 160 25 95 5.43e-24 92.8
MsG0180006133.01.T01 AT4G35570 57.746 71 30 0 90 160 25 95 5.43e-24 92.8
MsG0180006133.01.T01 AT2G17560 56.944 72 30 1 90 160 25 96 2.75e-22 88.6
MsG0180006133.01.T01 AT2G17560 56.944 72 30 1 90 160 25 96 3.12e-22 88.6
MsG0180006133.01.T01 AT2G17560 56.944 72 30 1 90 160 25 96 3.12e-22 88.6
MsG0180006133.01.T01 AT1G20693 54.545 77 34 1 87 162 25 101 6.77e-22 87.8
MsG0180006133.01.T01 AT1G20693 54.545 77 34 1 87 162 25 101 7.41e-22 87.8
MsG0180006133.01.T01 AT1G20693 54.545 77 34 1 87 162 25 101 7.60e-22 87.8
MsG0180006133.01.T01 AT3G51880 41.129 124 58 2 94 216 48 157 3.75e-21 87.0
MsG0180006133.01.T01 AT1G20696 53.750 80 36 1 83 162 20 98 1.95e-20 84.0
MsG0180006133.01.T01 AT1G20696 55.263 76 33 1 85 160 22 96 2.90e-20 83.6
MsG0180006133.01.T01 AT1G20696 53.750 80 36 1 83 162 20 98 2.98e-20 83.2
MsG0180006133.01.T01 AT3G51880 40.351 114 54 1 94 207 48 147 8.13e-20 83.2
MsG0180006133.01.T01 AT3G51880 40.351 114 54 1 94 207 48 147 8.13e-20 83.2
MsG0180006133.01.T01 AT3G51880 40.351 114 54 1 94 207 48 147 8.13e-20 83.2
MsG0180006133.01.T01 AT3G51880 55.224 67 30 0 94 160 48 114 9.90e-20 82.8
MsG0180006133.01.T01 AT5G23420 61.667 60 22 1 4 62 15 74 5.48e-18 78.2
MsG0180006133.01.T01 AT2G34450 50.000 64 32 0 99 162 63 126 5.62e-17 75.1
MsG0180006133.01.T01 AT2G34450 50.000 64 32 0 99 162 63 126 5.62e-17 75.1
MsG0180006133.01.T01 AT2G34450 50.000 64 32 0 99 162 63 126 5.62e-17 75.1
MsG0180006133.01.T01 AT2G34450 50.769 65 31 1 99 162 63 127 2.50e-15 70.9

Find 63 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAAGATTAAGAAATT+AGG 0.167332 1:+100542821 MsG0180006133.01.T01:five_prime_UTR
TTAGGAGAAGAAGCCTTATT+TGG 0.238707 1:+100543880 MsG0180006133.01.T01:intron
CTCTTAACATCCTTTGAATC+AGG 0.239936 1:-100543608 None:intergenic
TCAACAACCTTATCCAAATA+AGG 0.266781 1:-100543893 None:intergenic
CAAAAGAACCAAATGCAAAA+AGG 0.273542 1:+100543388 MsG0180006133.01.T01:CDS
AGCGAAAGCACTGCCATCTT+TGG 0.274022 1:-100542929 None:intergenic
ATGGCAGTGCTTTCGCTAAA+TGG 0.280098 1:+100542935 MsG0180006133.01.T01:CDS
AGAAGAAGATTAAGAAATTA+GGG 0.289079 1:+100542822 MsG0180006133.01.T01:five_prime_UTR
AACATGTCTTAGTTATGTTT+AGG 0.310224 1:+100544340 MsG0180006133.01.T01:three_prime_UTR
TAGTCTAAAGTTGTATAGTT+TGG 0.321772 1:+100544317 MsG0180006133.01.T01:three_prime_UTR
GAAGAGTAGTGGTGACATTT+TGG 0.329578 1:+100544252 MsG0180006133.01.T01:exon
ACATGTCTTAGTTATGTTTA+GGG 0.338284 1:+100544341 MsG0180006133.01.T01:three_prime_UTR
TAAAGTTGGGAAAGGGAAAA+AGG 0.356731 1:+100543413 MsG0180006133.01.T01:CDS
TCTTAATCTTCTTCTTCAAA+TGG 0.374039 1:-100542814 None:intergenic
GGTGGACGCTTCGGCGCATT+AGG 0.374547 1:-100543444 None:intergenic
GAAGAAGCCTTATTTGGATA+AGG 0.386677 1:+100543886 MsG0180006133.01.T01:CDS
CTAGCAGAAAATAATGTAAC+TGG 0.393604 1:-100544437 None:intergenic
TGCTGCTGCAGGAGAGGTGG+AGG 0.407036 1:+100544218 MsG0180006133.01.T01:CDS
GAATACATGATCACAAGATA+TGG 0.422310 1:-100544480 None:intergenic
GTTACGAAATGGCAACGAAA+AGG 0.426485 1:+100542863 MsG0180006133.01.T01:exon
AGAAATTAGGGTTAAATCAA+AGG 0.430186 1:+100542834 MsG0180006133.01.T01:five_prime_UTR
GAAATTAGGGTTAAATCAAA+GGG 0.433589 1:+100542835 MsG0180006133.01.T01:five_prime_UTR
TTACGAAATGGCAACGAAAA+GGG 0.447058 1:+100542864 MsG0180006133.01.T01:exon
AGCTGCTGCTGCAGGAGAGG+TGG 0.448405 1:+100544215 MsG0180006133.01.T01:CDS
AAAGCAGTTGGTGGACGCTT+CGG 0.448751 1:-100543453 None:intergenic
GACAAGGAAGCTGCTGCTGC+AGG 0.462916 1:+100544207 MsG0180006133.01.T01:CDS
CTGATTCAAAGGATGTTAAG+AGG 0.466487 1:+100543609 MsG0180006133.01.T01:CDS
AAAGGGAACACGTTACGAAA+TGG 0.466859 1:+100542852 MsG0180006133.01.T01:exon
TGCATGTCAATGAGTGCAAC+AGG 0.479421 1:-100543060 None:intergenic
GGGTTCTGATAAGGAAGATA+AGG 0.479785 1:+100544170 MsG0180006133.01.T01:CDS
AACTATACAACTTTAGACTA+AGG 0.481139 1:-100544314 None:intergenic
AACTGAAGGCAGAATATAGA+AGG 0.492342 1:+100543915 MsG0180006133.01.T01:CDS
AAATAGGTTGGTAAGGAAGC+TGG 0.492839 1:+100543724 MsG0180006133.01.T01:intron
GGATCAAGAGGGTTCTGATA+AGG 0.494850 1:+100544161 MsG0180006133.01.T01:intron
GCCAAAATCAAAATGAATCT+CGG 0.501868 1:+100543099 MsG0180006133.01.T01:CDS
GTTCTCGTTCGTGCCAAAGA+TGG 0.507354 1:+100542916 MsG0180006133.01.T01:CDS
GTAAGGAAGCTGGTGAGAAG+TGG 0.524391 1:+100543734 MsG0180006133.01.T01:CDS
CAGCTTCCTTGTCATCAGAC+TGG 0.532712 1:-100544197 None:intergenic
TCTTAACATCCTTTGAATCA+GGG 0.535919 1:-100543607 None:intergenic
GGATAAGGTTGTTGAACTGA+AGG 0.538046 1:+100543901 MsG0180006133.01.T01:CDS
GAAGTGGAGGTCTCTGACTG+AGG 0.540601 1:+100543750 MsG0180006133.01.T01:CDS
GGAAGCTAACCCTGATTCAA+AGG 0.545294 1:+100543598 MsG0180006133.01.T01:CDS
ATGAAAACAAAGAAAGCAGT+TGG 0.548460 1:-100543465 None:intergenic
GGAAGCTGCTGCTGCAGGAG+AGG 0.549573 1:+100544212 MsG0180006133.01.T01:CDS
AAAACAAAGAAAGCAGTTGG+TGG 0.566440 1:-100543462 None:intergenic
AGGCAGAATATAGAAGGCCA+TGG 0.568651 1:+100543921 MsG0180006133.01.T01:CDS
AGTTAACTGATGAAGAGTAG+TGG 0.571245 1:+100544241 MsG0180006133.01.T01:CDS
AAAAGGGCTAAAGTTGGGAA+AGG 0.581404 1:+100543405 MsG0180006133.01.T01:CDS
AGCAGCATTATACAATTCCA+TGG 0.595262 1:-100543938 None:intergenic
AGGAAGCTGGTGAGAAGTGG+AGG 0.606568 1:+100543737 MsG0180006133.01.T01:CDS
TGATTCAAAGGATGTTAAGA+GGG 0.616338 1:+100543610 MsG0180006133.01.T01:CDS
AAAGGGCTAAAGTTGGGAAA+GGG 0.618574 1:+100543406 MsG0180006133.01.T01:CDS
GCTGTATGTATAGGATCAAG+AGG 0.620076 1:+100544149 MsG0180006133.01.T01:intron
AAACAAAATTAGAAGCCCAA+AGG 0.629908 1:-100543985 None:intergenic
TGAAGCGGAACGAGAATCGA+CGG 0.630596 1:-100542893 None:intergenic
ACATGATCACAAGATATGGA+AGG 0.633260 1:-100544476 None:intergenic
GGCACGAACGAGAACTGAAG+CGG 0.641201 1:-100542908 None:intergenic
GGCATTAACAATATTCCAAG+AGG 0.642814 1:-100544416 None:intergenic
GGAAGGCCAGTCTGATGACA+AGG 0.644830 1:+100544191 MsG0180006133.01.T01:CDS
TCTGATAAGGAAGATAAGGA+AGG 0.664708 1:+100544174 MsG0180006133.01.T01:CDS
ACAACTTTAGACTAAGGCAA+TGG 0.670597 1:-100544308 None:intergenic
CTGTATGTATAGGATCAAGA+GGG 0.690024 1:+100544150 MsG0180006133.01.T01:intron
CTGAAGTGAAGAAACCCGAG+AGG 0.719762 1:+100543255 MsG0180006133.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATTAGTACTAATTA+GGG - Chr1:100543148-100543167 None:intergenic 10.0%
!!! GTATTTGATTTTATTTAATT+TGG + Chr1:100543200-100543219 MsG0180006133.01.T01:intron 10.0%
!!! TTTATTTTTTGAAATATTGT+AGG + Chr1:100543352-100543371 MsG0180006133.01.T01:intron 10.0%
!! AAAAAATCACAAACTAAAAT+TGG - Chr1:100543294-100543313 None:intergenic 15.0%
!! AAAAATCACAAACTAAAATT+GGG - Chr1:100543293-100543312 None:intergenic 15.0%
!! GATAATAATTAGTACTAATT+AGG - Chr1:100543149-100543168 None:intergenic 15.0%
!! TTACTTATATTGTGAAAAAT+AGG + Chr1:100543708-100543727 MsG0180006133.01.T01:intron 15.0%
!! AAAATCACAAACTAAAATTG+GGG - Chr1:100543292-100543311 None:intergenic 20.0%
!! AAGAAGAAGATTAAGAAATT+AGG + Chr1:100542821-100542840 MsG0180006133.01.T01:five_prime_UTR 20.0%
!! AGAAGAAGATTAAGAAATTA+GGG + Chr1:100542822-100542841 MsG0180006133.01.T01:five_prime_UTR 20.0%
!! TGATATGGTTAAAATTGTTT+AGG + Chr1:100543862-100543881 MsG0180006133.01.T01:intron 20.0%
!! TTATATTGTGAAAAATAGGT+TGG + Chr1:100543712-100543731 MsG0180006133.01.T01:intron 20.0%
!!! TCTGGTTTTTATTAGTATTT+AGG + Chr1:100543317-100543336 MsG0180006133.01.T01:intron 20.0%
!!! TGAGTTTAGAAAGATTTTTA+AGG + Chr1:100543577-100543596 MsG0180006133.01.T01:CDS 20.0%
!!! TGTTTTGATTTGTTTTGATT+TGG + Chr1:100543801-100543820 MsG0180006133.01.T01:intron 20.0%
!!! TTTTCACAATATAAGTAACA+TGG - Chr1:100543706-100543725 None:intergenic 20.0%
! AAAAGAACCAAATGCAAAAA+GGG + Chr1:100543389-100543408 MsG0180006133.01.T01:CDS 25.0%
! AAATCACAAACTAAAATTGG+GGG - Chr1:100543291-100543310 None:intergenic 25.0%
! AACATGTCTTAGTTATGTTT+AGG + Chr1:100544340-100544359 MsG0180006133.01.T01:three_prime_UTR 25.0%
! AACTATACAACTTTAGACTA+AGG - Chr1:100544317-100544336 None:intergenic 25.0%
! ACATGTCTTAGTTATGTTTA+GGG + Chr1:100544341-100544360 MsG0180006133.01.T01:three_prime_UTR 25.0%
! AGAAATTAGGGTTAAATCAA+AGG + Chr1:100542834-100542853 MsG0180006133.01.T01:five_prime_UTR 25.0%
! GAAATTAGGGTTAAATCAAA+GGG + Chr1:100542835-100542854 MsG0180006133.01.T01:five_prime_UTR 25.0%
! GCTGATATAATGTTATGATA+TGG + Chr1:100543847-100543866 MsG0180006133.01.T01:intron 25.0%
! TCTTAATCTTCTTCTTCAAA+TGG - Chr1:100542817-100542836 None:intergenic 25.0%
! TGTTTGATTAAGTTATCCAA+GGG + Chr1:100543669-100543688 MsG0180006133.01.T01:intron 25.0%
! TTGTTTGATTAAGTTATCCA+AGG + Chr1:100543668-100543687 MsG0180006133.01.T01:intron 25.0%
!! GAAAAAGAGTATATACGAAA+TGG - Chr1:100542986-100543005 None:intergenic 25.0%
!! TAGTCTAAAGTTGTATAGTT+TGG + Chr1:100544317-100544336 MsG0180006133.01.T01:three_prime_UTR 25.0%
!! TGTTCTGTTTTGTAATGTTT+TGG + Chr1:100543506-100543525 MsG0180006133.01.T01:intron 25.0%
!!! AGTGAAGCATGTTTTATTTT+GGG + Chr1:100544067-100544086 MsG0180006133.01.T01:intron 25.0%
!!! CTTTCTTTGTTTTCATGTAA+GGG + Chr1:100543472-100543491 MsG0180006133.01.T01:intron 25.0%
AAACAAAATTAGAAGCCCAA+AGG - Chr1:100543988-100544007 None:intergenic 30.0%
ATGAAAACAAAGAAAGCAGT+TGG - Chr1:100543468-100543487 None:intergenic 30.0%
CAAAAGAACCAAATGCAAAA+AGG + Chr1:100543388-100543407 MsG0180006133.01.T01:CDS 30.0%
CTAGCAGAAAATAATGTAAC+TGG - Chr1:100544440-100544459 None:intergenic 30.0%
GCCAAAATCAAAATGAATCT+CGG + Chr1:100543099-100543118 MsG0180006133.01.T01:CDS 30.0%
TCAACAACCTTATCCAAATA+AGG - Chr1:100543896-100543915 None:intergenic 30.0%
TCTTAACATCCTTTGAATCA+GGG - Chr1:100543610-100543629 None:intergenic 30.0%
TGATTCAAAGGATGTTAAGA+GGG + Chr1:100543610-100543629 MsG0180006133.01.T01:CDS 30.0%
TTTGCTTTCTTTACTTAAGC+TGG + Chr1:100544028-100544047 MsG0180006133.01.T01:intron 30.0%
! AAGTGAAGTATGTTTTCCTT+TGG + Chr1:100543969-100543988 MsG0180006133.01.T01:CDS 30.0%
! AGTGAAGTATGTTTTCCTTT+GGG + Chr1:100543970-100543989 MsG0180006133.01.T01:CDS 30.0%
!! GATTGGTTTGATTTGTTTCA+GGG + Chr1:100543553-100543572 MsG0180006133.01.T01:intron 30.0%
!! TGATTGGTTTGATTTGTTTC+AGG + Chr1:100543552-100543571 MsG0180006133.01.T01:intron 30.0%
!! TTGTGAAAAATAGGTTGGTA+AGG + Chr1:100543717-100543736 MsG0180006133.01.T01:intron 30.0%
!! TTTGTTTTCATGTAAGGGTT+TGG + Chr1:100543477-100543496 MsG0180006133.01.T01:intron 30.0%
!!! ACCGAGATTCATTTTGATTT+TGG - Chr1:100543103-100543122 None:intergenic 30.0%
!!! AGTTTGTGATTTTTTGACTC+TGG + Chr1:100543299-100543318 MsG0180006133.01.T01:intron 30.0%
!!! GAGTGAAGCATGTTTTATTT+TGG + Chr1:100544066-100544085 MsG0180006133.01.T01:intron 30.0%
!!! GCATTTGGTTCTTTTGAATT+TGG - Chr1:100543384-100543403 None:intergenic 30.0%
!!! GCTTTCTTTGTTTTCATGTA+AGG + Chr1:100543471-100543490 MsG0180006133.01.T01:intron 30.0%
!!! GTTTTGGTTCTATAGTTTGA+GGG + Chr1:100543522-100543541 MsG0180006133.01.T01:intron 30.0%
!!! TCATTTTGATTTTGGCTTCA+AGG - Chr1:100543095-100543114 None:intergenic 30.0%
!!! TGTTTTGGTTCTATAGTTTG+AGG + Chr1:100543521-100543540 MsG0180006133.01.T01:intron 30.0%
!!! TTTTGGTTCTATAGTTTGAG+GGG + Chr1:100543523-100543542 MsG0180006133.01.T01:intron 30.0%
AAAACAAAGAAAGCAGTTGG+TGG - Chr1:100543465-100543484 None:intergenic 35.0%
AACTGAAGGCAGAATATAGA+AGG + Chr1:100543915-100543934 MsG0180006133.01.T01:CDS 35.0%
AATGCAAAAAGGGCTAAAGT+TGG + Chr1:100543399-100543418 MsG0180006133.01.T01:CDS 35.0%
ACAACTTTAGACTAAGGCAA+TGG - Chr1:100544311-100544330 None:intergenic 35.0%
AGCAGCATTATACAATTCCA+TGG - Chr1:100543941-100543960 None:intergenic 35.0%
AGTTAACTGATGAAGAGTAG+TGG + Chr1:100544241-100544260 MsG0180006133.01.T01:CDS 35.0%
ATGCAAAAAGGGCTAAAGTT+GGG + Chr1:100543400-100543419 MsG0180006133.01.T01:CDS 35.0%
CATGGTCAATAATAAACCCT+TGG - Chr1:100543688-100543707 None:intergenic 35.0%
CTCTTAACATCCTTTGAATC+AGG - Chr1:100543611-100543630 None:intergenic 35.0%
CTGATTCAAAGGATGTTAAG+AGG + Chr1:100543609-100543628 MsG0180006133.01.T01:CDS 35.0%
CTGTATGTATAGGATCAAGA+GGG + Chr1:100544150-100544169 MsG0180006133.01.T01:intron 35.0%
GGCATTAACAATATTCCAAG+AGG - Chr1:100544419-100544438 None:intergenic 35.0%
TAAAGTTGGGAAAGGGAAAA+AGG + Chr1:100543413-100543432 MsG0180006133.01.T01:CDS 35.0%
TCTGATAAGGAAGATAAGGA+AGG + Chr1:100544174-100544193 MsG0180006133.01.T01:CDS 35.0%
TTACGAAATGGCAACGAAAA+GGG + Chr1:100542864-100542883 MsG0180006133.01.T01:exon 35.0%
TTTGCTCTCTTTACTTAAGC+TGG + Chr1:100544125-100544144 MsG0180006133.01.T01:intron 35.0%
! ACTTTAGCCCTTTTTGCATT+TGG - Chr1:100543399-100543418 None:intergenic 35.0%
! ATCTTTTTGCATTGTCCTCT+TGG + Chr1:100544401-100544420 MsG0180006133.01.T01:three_prime_UTR 35.0%
!! GAAGAAGCCTTATTTGGATA+AGG + Chr1:100543886-100543905 MsG0180006133.01.T01:CDS 35.0%
!! TTAGGAGAAGAAGCCTTATT+TGG + Chr1:100543880-100543899 MsG0180006133.01.T01:intron 35.0%
AAAAGGGCTAAAGTTGGGAA+AGG + Chr1:100543405-100543424 MsG0180006133.01.T01:CDS 40.0%
AAAGGGAACACGTTACGAAA+TGG + Chr1:100542852-100542871 MsG0180006133.01.T01:exon 40.0%
AAAGGGCTAAAGTTGGGAAA+GGG + Chr1:100543406-100543425 MsG0180006133.01.T01:CDS 40.0%
GCTGTATGTATAGGATCAAG+AGG + Chr1:100544149-100544168 MsG0180006133.01.T01:intron 40.0%
GGATAAGGTTGTTGAACTGA+AGG + Chr1:100543901-100543920 MsG0180006133.01.T01:CDS 40.0%
GTTACGAAATGGCAACGAAA+AGG + Chr1:100542863-100542882 MsG0180006133.01.T01:exon 40.0%
GTTTGAGGGGTTTAGTTGAT+TGG + Chr1:100543536-100543555 MsG0180006133.01.T01:intron 40.0%
TGGGAAAGGGAAAAAGGTTA+AGG + Chr1:100543419-100543438 MsG0180006133.01.T01:CDS 40.0%
! GAAGAGTAGTGGTGACATTT+TGG + Chr1:100544252-100544271 MsG0180006133.01.T01:exon 40.0%
! GGGTTCTGATAAGGAAGATA+AGG + Chr1:100544170-100544189 MsG0180006133.01.T01:CDS 40.0%
!! AAATAGGTTGGTAAGGAAGC+TGG + Chr1:100543724-100543743 MsG0180006133.01.T01:intron 40.0%
!! TAAGCTGGTGCTGTATGTAT+AGG + Chr1:100544140-100544159 MsG0180006133.01.T01:intron 40.0%
AGGCAGAATATAGAAGGCCA+TGG + Chr1:100543921-100543940 MsG0180006133.01.T01:CDS 45.0%
ATGGCAGTGCTTTCGCTAAA+TGG + Chr1:100542935-100542954 MsG0180006133.01.T01:CDS 45.0%
GGAAGCTAACCCTGATTCAA+AGG + Chr1:100543598-100543617 MsG0180006133.01.T01:CDS 45.0%
TGCATGTCAATGAGTGCAAC+AGG - Chr1:100543063-100543082 None:intergenic 45.0%
! GAGTAGTGGTGACATTTTGG+TGG + Chr1:100544255-100544274 MsG0180006133.01.T01:exon 45.0%
! GGATCAAGAGGGTTCTGATA+AGG + Chr1:100544161-100544180 MsG0180006133.01.T01:intron 45.0%
! GGGGAAATTTTTCACCTCTC+GGG - Chr1:100543272-100543291 None:intergenic 45.0%
! GGGGGAAATTTTTCACCTCT+CGG - Chr1:100543273-100543292 None:intergenic 45.0%
!! AAGCTGGTGCTGTATGCATA+GGG + Chr1:100544044-100544063 MsG0180006133.01.T01:intron 45.0%
!! TAAGCTGGTGCTGTATGCAT+AGG + Chr1:100544043-100544062 MsG0180006133.01.T01:intron 45.0%
CAGCTTCCTTGTCATCAGAC+TGG - Chr1:100544200-100544219 None:intergenic 50.0%
CTGAAGTGAAGAAACCCGAG+AGG + Chr1:100543255-100543274 MsG0180006133.01.T01:CDS 50.0%
GTAAGGAAGCTGGTGAGAAG+TGG + Chr1:100543734-100543753 MsG0180006133.01.T01:CDS 50.0%
GTTCTCGTTCGTGCCAAAGA+TGG + Chr1:100542916-100542935 MsG0180006133.01.T01:CDS 50.0%
TGAAGCGGAACGAGAATCGA+CGG - Chr1:100542896-100542915 None:intergenic 50.0%
!! AAAGCAGTTGGTGGACGCTT+CGG - Chr1:100543456-100543475 None:intergenic 50.0%
!! AGCGAAAGCACTGCCATCTT+TGG - Chr1:100542932-100542951 None:intergenic 50.0%
AGGAAGCTGGTGAGAAGTGG+AGG + Chr1:100543737-100543756 MsG0180006133.01.T01:CDS 55.0%
GAAGTGGAGGTCTCTGACTG+AGG + Chr1:100543750-100543769 MsG0180006133.01.T01:CDS 55.0%
GGAAGGCCAGTCTGATGACA+AGG + Chr1:100544191-100544210 MsG0180006133.01.T01:CDS 55.0%
GGCACGAACGAGAACTGAAG+CGG - Chr1:100542911-100542930 None:intergenic 55.0%
GACAAGGAAGCTGCTGCTGC+AGG + Chr1:100544207-100544226 MsG0180006133.01.T01:CDS 60.0%
AGCTGCTGCTGCAGGAGAGG+TGG + Chr1:100544215-100544234 MsG0180006133.01.T01:CDS 65.0%
GGAAGCTGCTGCTGCAGGAG+AGG + Chr1:100544212-100544231 MsG0180006133.01.T01:CDS 65.0%
GGTGGACGCTTCGGCGCATT+AGG - Chr1:100543447-100543466 None:intergenic 65.0%
TGCTGCTGCAGGAGAGGTGG+AGG + Chr1:100544218-100544237 MsG0180006133.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100542812 100544489 100542812 ID=MsG0180006133.01;Name=MsG0180006133.01
Chr1 mRNA 100542812 100544489 100542812 ID=MsG0180006133.01.T01;Parent=MsG0180006133.01;Name=MsG0180006133.01.T01;_AED=0.26;_eAED=0.28;_QI=59|0.85|0.87|1|1|1|8|229|216
Chr1 exon 100542812 100542956 100542812 ID=MsG0180006133.01.T01:exon:2000;Parent=MsG0180006133.01.T01
Chr1 exon 100543038 100543120 100543038 ID=MsG0180006133.01.T01:exon:2001;Parent=MsG0180006133.01.T01
Chr1 exon 100543231 100543276 100543231 ID=MsG0180006133.01.T01:exon:2002;Parent=MsG0180006133.01.T01
Chr1 exon 100543374 100543487 100543374 ID=MsG0180006133.01.T01:exon:2003;Parent=MsG0180006133.01.T01
Chr1 exon 100543574 100543631 100543574 ID=MsG0180006133.01.T01:exon:2004;Parent=MsG0180006133.01.T01
Chr1 exon 100543730 100543774 100543730 ID=MsG0180006133.01.T01:exon:2005;Parent=MsG0180006133.01.T01
Chr1 exon 100543884 100544003 100543884 ID=MsG0180006133.01.T01:exon:2006;Parent=MsG0180006133.01.T01
Chr1 exon 100544162 100544489 100544162 ID=MsG0180006133.01.T01:exon:2007;Parent=MsG0180006133.01.T01
Chr1 five_prime_UTR 100542812 100542870 100542812 ID=MsG0180006133.01.T01:five_prime_utr;Parent=MsG0180006133.01.T01
Chr1 CDS 100542871 100542956 100542871 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100543038 100543120 100543038 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100543231 100543276 100543231 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100543374 100543487 100543374 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100543574 100543631 100543574 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100543730 100543774 100543730 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100543884 100544003 100543884 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 CDS 100544162 100544260 100544162 ID=MsG0180006133.01.T01:cds;Parent=MsG0180006133.01.T01
Chr1 three_prime_UTR 100544261 100544489 100544261 ID=MsG0180006133.01.T01:three_prime_utr;Parent=MsG0180006133.01.T01
Gene Sequence

>MsG0180006133.01.T01

ATGGCAACGAAAAGGGTTGATGCCGTCGATTCTCGTTCCGCTTCAGTTCTCGTTCGTGCCAAAGATGGCAGTGCTTTCGCTAAATGTGATGAGTGTAAGAAAGATGTTCCTGTTGCACTCATTGACATGCACAATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTCGAATCTCATGCTGTTGAGCAAGCTGCTGAAGTGAAGAAACCCGAGAGGAAGAAGCCAAATTCAAAAGAACCAAATGCAAAAAGGGCTAAAGTTGGGAAAGGGAAAAAGGTTAAGGATCCTAATGCGCCGAAGCGTCCACCAACTGCTTTCTTTGTTTTCATGGATGAGTTTAGAAAGATTTTTAAGGAAGCTAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAGGAAGCTGGTGAGAAGTGGAGGTCTCTGACTGAGGAAGAGAAGAAGCCTTATTTGGATAAGGTTGTTGAACTGAAGGCAGAATATAGAAGGCCATGGAATTGTATAATGCTGCTACTGCTGAAAGTGAAGTATGTTTTCCTTTGGGCTTCTAATTTTGATCAAGAGGGTTCTGATAAGGAAGATAAGGAAGGCCAGTCTGATGACAAGGAAGCTGCTGCTGCAGGAGAGGTGGAGGAGTTAACTGATGAAGAGTAG

Protein sequence

>MsG0180006133.01.T01

MATKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALIDMHNCSLEAKIKMNLESHAVEQAAEVKKPERKKPNSKEPNAKRAKVGKGKKVKDPNAPKRPPTAFFVFMDEFRKIFKEANPDSKDVKRVGKEAGEKWRSLTEEEKKPYLDKVVELKAEYRRPWNCIMLLLLKVKYVFLWASNFDQEGSDKEDKEGQSDDKEAAAAGEVEELTDEE*