AlfalfaGEDB | MsG0780040620.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040620.01

KEGG: K11251
GO: GO:0000786 GO:0003677 GO:0005634 GO:0046982
PFAM: PF00125 PF16211

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040620.01.T01	XP_003625323.1	99.296	142	1	0	1	142	1	142	1.96E-96	284

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040620.01.T01	Q9S9K7	85.211	142	21	0	1	142	1	142	1.86E-84	246

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040620.01.T01	G7KWD1	99.296	142	1	0	1	142	1	142	9.35e-97	284

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0780040620.01	0.869079	4.050538e-66	1.500121e-62
MsG0080048258.01	MsG0780040620.01	0.845565	3.752456e-59	6.278776e-56
MsG0080048311.01	MsG0780040620.01	0.806265	8.947924e-50	4.835492e-47
MsG0080048775.01	MsG0780040620.01	0.865391	6.111755e-65	1.985122e-61
MsG0080048781.01	MsG0780040620.01	0.897566	1.242036e-76	1.411495e-72
MsG0080049140.01	MsG0780040620.01	0.852005	6.129697e-61	1.263117e-57
MsG0180000111.01	MsG0780040620.01	0.851020	1.164294e-60	2.324755e-57
MsG0180000314.01	MsG0780040620.01	0.803808	2.921536e-49	1.482141e-46
MsG0180001293.01	MsG0780040620.01	0.878149	3.547545e-69	1.832042e-65
MsG0180001719.01	MsG0780040620.01	0.800857	1.183847e-48	5.571413e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040620.01.T01	MTR_7g093910	99.296	142	1	0	1	142	1	142	2.37e-100	284
MsG0780040620.01.T01	MTR_7g108320	85.211	142	21	0	1	142	1	142	1.26e-85	246
MsG0780040620.01.T01	MTR_7g114060	88.060	134	16	0	9	142	6	139	5.25e-83	240
MsG0780040620.01.T01	MTR_7g114040	88.060	134	16	0	9	142	6	139	5.25e-83	240
MsG0780040620.01.T01	MTR_2g082510	80.328	122	20	1	13	130	3	124	7.16e-67	199
MsG0780040620.01.T01	MTR_2g082220	81.818	121	14	2	13	127	3	121	3.92e-66	197
MsG0780040620.01.T01	MTR_7g114050	78.626	131	17	2	12	142	11	130	5.56e-66	196
MsG0780040620.01.T01	MTR_7g113160	76.271	118	28	0	12	129	16	133	8.55e-60	181
MsG0780040620.01.T01	MTR_2g096610	79.439	107	22	0	21	127	21	127	1.27e-58	179
MsG0780040620.01.T01	MTR_4g071150	80.189	106	21	0	22	127	24	129	1.05e-57	176

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040620.01.T01	AT1G54690	85.211	142	21	0	1	142	1	142	1.90e-85	246
MsG0780040620.01.T01	AT1G08880	83.803	142	23	0	1	142	1	142	1.58e-84	244
MsG0780040620.01.T01	AT4G27230	79.839	124	21	1	13	132	3	126	7.92e-67	199
MsG0780040620.01.T01	AT4G27230	79.839	124	21	1	13	132	3	126	7.92e-67	199
MsG0780040620.01.T01	AT5G54640	79.032	124	22	1	13	132	3	126	2.99e-66	197
MsG0780040620.01.T01	AT3G20670	79.032	124	22	1	13	132	3	126	2.12e-65	195
MsG0780040620.01.T01	AT1G51060	77.419	124	24	1	13	132	3	126	2.47e-65	195
MsG0780040620.01.T01	AT5G59870	72.059	136	32	3	4	134	2	136	1.41e-61	186
MsG0780040620.01.T01	AT5G27670	73.600	125	29	1	7	127	6	130	6.77e-57	174
MsG0780040620.01.T01	AT5G02560	78.505	107	23	0	21	127	23	129	1.91e-56	173

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Find 57 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGTGGCTGGAAAGA+AGG	0.474142	7:-80127976	MsG0780040620.01.T01:CDS
AACAAAGTCTGGTGAATGTT+AGG	0.388717	7:+80128002	None:intergenic
AACAACCAAGAAAGGTGGAA+GGG	0.595913	7:-80128418	MsG0780040620.01.T01:CDS
AACGGCGGAGAGGTAAACAG+GGG	0.752615	7:+80128275	None:intergenic
AAGAAGGTGGCTGGAAAGAA+GGG	0.567889	7:-80127975	MsG0780040620.01.T01:CDS
AAGCGAGCGATGCGGCCAAC+AGG	0.372811	7:+80128339	None:intergenic
AATTCAATTTCAACCAAGAA+AGG	0.427612	7:-80128465	MsG0780040620.01.T01:five_prime_UTR
AATTGGCTGGTAATGCTGCA+AGG	0.630027	7:-80128136	MsG0780040620.01.T01:CDS
ACAACCAAGAAAGGTGGAAG+GGG	0.581051	7:-80128417	MsG0780040620.01.T01:CDS
ACAGAGGTATTCAAGAACGG+CGG	0.747797	7:+80128260	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAACTCAAAATAACACTTG+AGG	+	Chr7:80128050-80128069	None:intergenic	30.0%
GAAGAATTGAGCAAATTGTT+GGG	-	Chr7:80128201-80128220	MsG0780040620.01.T01:intron	30.0%
GATTAGGTTAGGATTAATGT+TGG	-	Chr7:80128433-80128452	MsG0780040620.01.T01:CDS	30.0%
TGAAGAATTGAGCAAATTGT+TGG	-	Chr7:80128200-80128219	MsG0780040620.01.T01:intron	30.0%
TGTTGGATCGTTAAAATGTT+AGG	-	Chr7:80128356-80128375	MsG0780040620.01.T01:CDS	30.0%
AACAAAGTCTGGTGAATGTT+AGG	+	Chr7:80128258-80128277	None:intergenic	35.0%
AGAAATTGGATCTGTTAGTC+AGG	-	Chr7:80128305-80128324	MsG0780040620.01.T01:CDS	35.0%
TAGGGGTTTAATGTAGCATT+TGG	-	Chr7:80128333-80128352	MsG0780040620.01.T01:CDS	35.0%
TTCAACCAAGAAAGGTTCAA+TGG	-	Chr7:80127800-80127819	MsG0780040620.01.T01:three_prime_UTR	35.0%
AACAACCAAGAAAGGTGGAA+GGG	-	Chr7:80127839-80127858	MsG0780040620.01.T01:three_prime_UTR	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	80127763	80128516	80127763	ID=MsG0780040620.01;Name=MsG0780040620.01
Chr7	mRNA	80127763	80128516	80127763	ID=MsG0780040620.01.T01;Parent=MsG0780040620.01;Name=MsG0780040620.01.T01;_AED=0.44;_eAED=0.44;_QI=56\|1\|1\|1\|1\|1\|2\|181\|142
Chr7	exon	80127763	80128165	80127763	ID=MsG0780040620.01.T01:exon:16412;Parent=MsG0780040620.01.T01
Chr7	exon	80128254	80128516	80128254	ID=MsG0780040620.01.T01:exon:16411;Parent=MsG0780040620.01.T01
Chr7	five_prime_UTR	80128461	80128516	80128461	ID=MsG0780040620.01.T01:five_prime_utr;Parent=MsG0780040620.01.T01
Chr7	CDS	80128254	80128460	80128254	ID=MsG0780040620.01.T01:cds;Parent=MsG0780040620.01.T01
Chr7	CDS	80127944	80128165	80127944	ID=MsG0780040620.01.T01:cds;Parent=MsG0780040620.01.T01
Chr7	three_prime_UTR	80127763	80127943	80127763	ID=MsG0780040620.01.T01:three_prime_utr;Parent=MsG0780040620.01.T01

Gene Sequence

>MsG0780040620.01.T01

ATGGCTTCAGATGCAACTGCAACAACCAAGAAAGGTGGAAGGGGCAAACCCAAAACCACCAAGTCCGTTTCCAGATCAAGCAAAGCCGGTCTCCAGTTCCCTGTTGGCCGCATCGCTCGCTTCCTCAAAGCAGGTCGTTATTCTCAACGTGTTGGATCTGGTTCCCCTGTTTACCTCTCCGCCGTTCTTGAATACCTCTGTGCCGAGGTTTTGGAATTGGCTGGTAATGCTGCAAGGGATAACAAGAAGACAAGGATTGTACCAAGGCACCTGCAACTAGCTGTGAGGAACGATGAAGAATTGAGCAAATTGTTGGGACATGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATTCACCAGACTTTGTTGCCAAAGAAGGTGGCTGGAAAGAAGGGAGAAATTGGATCTGTTAGTCAGGAGTTTTAG

Protein sequence

>MsG0780040620.01.T01

MASDATATTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARFLKAGRYSQRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPKKVAGKKGEIGSVSQEF*