AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025203.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025203.01.T01 MTR_5g024200 95.580 181 8 0 201 381 12 192 2.49e-122 351
MsG0580025203.01.T01 MTR_5g024200 93.923 181 9 1 201 381 12 190 3.01e-118 341
MsG0580025203.01.T01 MTR_5g024200 97.902 143 3 0 201 343 12 154 2.74e-96 285
MsG0580025203.01.T01 MTR_5g024200 94.000 150 9 0 201 350 12 161 2.98e-96 285
MsG0580025203.01.T01 MTR_5g024180 99.259 135 1 0 69 203 1 135 2.21e-90 268
MsG0580025203.01.T01 MTR_5g024200 96.739 92 3 0 201 292 12 103 4.79e-57 183
MsG0580025203.01.T01 MTR_8g073345 68.421 133 39 2 69 200 1 131 3.40e-54 175
MsG0580025203.01.T01 MTR_5g024200 93.478 92 4 1 201 292 12 101 4.18e-53 173
MsG0580025203.01.T01 MTR_8g073345 67.969 128 38 2 69 195 1 126 7.78e-51 167
MsG0580025203.01.T01 MTR_5g024180 94.505 91 2 1 111 198 3 93 6.92e-48 158
MsG0580025203.01.T01 MTR_3g115580 56.522 115 43 2 71 178 5 119 6.08e-33 121
MsG0580025203.01.T01 MTR_7g068280 59.000 100 40 1 100 199 47 145 2.19e-27 106
MsG0580025203.01.T01 MTR_7g082820 62.195 82 29 2 96 176 4 84 6.23e-25 99.4
MsG0580025203.01.T01 MTR_1g115220 47.525 101 51 1 100 200 98 196 3.85e-23 96.7
MsG0580025203.01.T01 MTR_0405s0060 94.118 34 2 0 150 183 74 107 5.83e-13 68.2
MsG0580025203.01.T01 MTR_4g094622 38.272 81 50 0 93 173 53 133 8.28e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025203.01.T01 AT5G66005 64.641 181 64 0 201 381 12 192 5.94e-82 249
MsG0580025203.01.T01 AT5G66005 71.831 142 39 1 201 342 12 152 4.30e-69 215
MsG0580025203.01.T01 AT5G66005 64.626 147 52 0 235 381 1 147 2.90e-63 199
MsG0580025203.01.T01 AT5G66005 64.626 147 52 0 235 381 1 147 2.90e-63 199
MsG0580025203.01.T01 AT5G66005 64.626 147 52 0 235 381 1 147 2.90e-63 199
MsG0580025203.01.T01 AT5G66005 63.717 113 41 0 269 381 3 115 9.55e-48 158
MsG0580025203.01.T01 AT5G66005 63.717 113 41 0 269 381 3 115 9.55e-48 158
MsG0580025203.01.T01 AT5G66005 63.717 113 41 0 269 381 3 115 9.55e-48 158
MsG0580025203.01.T01 AT1G20693 63.866 119 38 3 86 204 23 136 6.29e-39 136
MsG0580025203.01.T01 AT1G20693 64.545 110 35 2 86 195 23 128 3.36e-36 129
MsG0580025203.01.T01 AT1G20693 64.545 110 35 2 86 195 23 128 3.46e-36 129
MsG0580025203.01.T01 AT1G20696 66.327 98 32 1 98 195 29 125 1.37e-34 125
MsG0580025203.01.T01 AT2G17560 50.769 130 61 1 74 203 8 134 2.58e-34 124
MsG0580025203.01.T01 AT3G51880 56.489 131 45 5 77 199 18 144 1.07e-33 124
MsG0580025203.01.T01 AT2G17560 52.033 123 56 1 74 196 8 127 1.96e-33 122
MsG0580025203.01.T01 AT2G17560 52.033 123 56 1 74 196 8 127 1.96e-33 122
MsG0580025203.01.T01 AT3G51880 56.489 131 45 5 77 199 18 144 2.00e-33 123
MsG0580025203.01.T01 AT3G51880 56.489 131 45 5 77 199 18 144 2.00e-33 123
MsG0580025203.01.T01 AT3G51880 56.489 131 45 5 77 199 18 144 2.00e-33 123
MsG0580025203.01.T01 AT1G20696 72.368 76 21 0 98 173 29 104 8.16e-32 117
MsG0580025203.01.T01 AT1G20696 72.368 76 21 0 98 173 29 104 1.11e-31 117
MsG0580025203.01.T01 AT3G51880 55.906 127 44 5 77 195 18 140 3.96e-31 116
MsG0580025203.01.T01 AT4G35570 43.902 123 63 2 75 197 9 125 4.01e-27 104
MsG0580025203.01.T01 AT4G35570 43.902 123 63 2 75 197 9 125 4.01e-27 104
MsG0580025203.01.T01 AT1G20696 56.989 93 38 2 112 204 1 91 8.83e-25 97.4
MsG0580025203.01.T01 AT1G20696 57.143 84 35 1 112 195 1 83 3.49e-22 90.5
MsG0580025203.01.T01 AT5G23420 49.275 69 32 2 102 169 113 179 1.31e-11 64.7
MsG0580025203.01.T01 AT2G34450 33.333 90 59 1 104 193 63 151 4.67e-11 61.2
MsG0580025203.01.T01 AT2G34450 33.333 90 59 1 104 193 63 151 4.67e-11 61.2
MsG0580025203.01.T01 AT2G34450 33.333 90 59 1 104 193 63 151 4.67e-11 61.2

Find 92 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATATCTCTTCCAAATTT+TGG 0.093469 5:-15234142 None:intergenic
TCCATTCCAGTTCCAAAATT+TGG 0.142826 5:+15234130 MsG0580025203.01.T01:CDS
GGAGTCAAATATTCCAATTT+TGG 0.214856 5:+15234105 MsG0580025203.01.T01:CDS
TTTGGAGAGAATAATTATTT+TGG 0.232279 5:-15234744 None:intergenic
TTCTCCAATTTCTCACTCTT+TGG 0.232880 5:-15234762 None:intergenic
TAGAAAATCTCAATGCAATT+TGG 0.263486 5:+15234630 MsG0580025203.01.T01:three_prime_UTR
CTCTCCAAAGAGTGAGAAAT+TGG 0.263728 5:+15234758 MsG0580025203.01.T01:three_prime_UTR
GACAATGCGTGCTTACAATA+TGG 0.281097 5:+15229937 MsG0580025203.01.T01:CDS
GTAGGTGAAGTTAGAGTTGC+AGG 0.284755 5:+15232663 MsG0580025203.01.T01:intron
ACTAGCACTGCCTGAGTTAC+AGG 0.296329 5:+15233657 MsG0580025203.01.T01:CDS
GGAGGCCTCTTAGGCTTGTT+AGG 0.297257 5:-15229346 None:intergenic
AAAGCACTTGGAGGCCTCTT+AGG 0.299005 5:-15229355 None:intergenic
AAGAAGAAGATAAAGGGTTT+TGG 0.301299 5:-15229079 None:intergenic
TAGAGAGAAGAAGAAGATAA+AGG 0.308259 5:-15229086 None:intergenic
TTACATTGAGTGTTAGTAAC+AGG 0.309948 5:+15234426 MsG0580025203.01.T01:CDS
TCTTAAACATGACAGTTAAA+AGG 0.310435 5:-15234659 None:intergenic
ACTGGAATGGAAGCCAAAAT+TGG 0.325706 5:-15234118 None:intergenic
AGTTCTAAATGCATAGTGAT+AGG 0.332605 5:+15234555 MsG0580025203.01.T01:three_prime_UTR
TTGAATTAGGTTGGGAAAGC+TGG 0.350890 5:+15229733 MsG0580025203.01.T01:intron
TTTGAAGTTGTCACTCTTGA+TGG 0.356095 5:+15232699 MsG0580025203.01.T01:CDS
GTGTGGGGTTTGAGGCTTTG+AGG 0.361311 5:-15232540 None:intergenic
TGTGGGGTTTGAGGCTTTGA+GGG 0.367067 5:-15232539 None:intergenic
AACCTTAAGTGTGGGGTTTG+AGG 0.368473 5:-15232548 None:intergenic
AAGCGCAAGGGCGCTGGTAC+TGG 0.369054 5:+15229295 MsG0580025203.01.T01:CDS
AGAACAAATACACTCACTTC+TGG 0.380327 5:+15234460 MsG0580025203.01.T01:CDS
AGAGAGAAGAAGAAGATAAA+GGG 0.389610 5:-15229085 None:intergenic
CTCACAGATGGCCGAACGTT+GGG 0.423302 5:+15233602 MsG0580025203.01.T01:CDS
TTATCAGCCTTAGCATTGAA+TGG 0.428927 5:-15229893 None:intergenic
AAACCCCACACTTAAGGTTC+AGG 0.430718 5:+15232552 MsG0580025203.01.T01:CDS
ACTTTATACTTCCCAACGTT+CGG 0.431405 5:-15233613 None:intergenic
ACAGCAACGGACTTGTTGCT+TGG 0.433440 5:-15229623 None:intergenic
AGCCTCAAACCCCACACTTA+AGG 0.434567 5:+15232546 MsG0580025203.01.T01:CDS
TTAGCATCGGAAACAGCTTT+CGG 0.437399 5:-15229156 None:intergenic
AGTTAGAGTTGCAGGTGAGA+GGG 0.448371 5:+15232671 MsG0580025203.01.T01:CDS
CCCTGCAGTTCTAAAAGTCT+TGG 0.453005 5:+15234084 MsG0580025203.01.T01:CDS
ATGCTAAACCTGCTGATAAC+CGG 0.456641 5:+15229172 MsG0580025203.01.T01:CDS
ACAATGCGTGCTTACAATAT+GGG 0.459061 5:+15229938 MsG0580025203.01.T01:CDS
ACACTCACTTCTGGAAGATC+TGG 0.464961 5:+15234469 MsG0580025203.01.T01:CDS
AGAGTTGCAGGTGAGAGGGT+TGG 0.465713 5:+15232675 MsG0580025203.01.T01:CDS
AACCCCACACTTAAGGTTCA+GGG 0.467013 5:+15232553 MsG0580025203.01.T01:CDS
AAGTTAGAGTTGCAGGTGAG+AGG 0.469126 5:+15232670 MsG0580025203.01.T01:CDS
AGCAAGCTCACCTGTAACTC+AGG 0.480684 5:-15233667 None:intergenic
TGCTAAGGCTGATAAGTTGA+AGG 0.485540 5:+15229901 MsG0580025203.01.T01:CDS
ATTGAAGCACGGGTTTGCGC+GGG 0.492775 5:-15228977 None:intergenic
GTCATCATTTACTTCAGACT+TGG 0.494175 5:-15230109 None:intergenic
CAGCTTTCGGCATGGTGAAA+CGG 0.496316 5:-15229143 None:intergenic
GAATCTCACCGGTTATCAGC+AGG 0.496399 5:-15229180 None:intergenic
TCGGCCATCTGTGAGACTCT+TGG 0.501146 5:-15233594 None:intergenic
GAAAATGAAAATTGAAGCAC+GGG 0.504226 5:-15228987 None:intergenic
GTTCAGAGAGAGGTTTAAGA+AGG 0.508587 5:+15229595 MsG0580025203.01.T01:CDS
TTGTATTGAGAAGGATAAAG+AGG 0.511134 5:-15229010 None:intergenic
TCTTCTGAACTCACGCTATG+TGG 0.515248 5:+15234521 MsG0580025203.01.T01:three_prime_UTR
GGAAAGCTGGTGGAAAGGAA+TGG 0.519414 5:+15229746 MsG0580025203.01.T01:CDS
CATTGACGAAGTTGGTAAGA+TGG 0.521467 5:+15234039 MsG0580025203.01.T01:CDS
AGGTTGAAGCGCAAGGGCGC+TGG 0.524589 5:+15229289 MsG0580025203.01.T01:intron
GTTTGTTAGGTTGAAGCGCA+AGG 0.526395 5:+15229282 MsG0580025203.01.T01:intron
AAGAATGCTTCTGAGGAAGA+AGG 0.530721 5:+15230075 MsG0580025203.01.T01:CDS
AATTGAAGCACGGGTTTGCG+CGG 0.531879 5:-15228978 None:intergenic
TGTATTGAGAAGGATAAAGA+GGG 0.532162 5:-15229009 None:intergenic
GTTTATGTGTAAATATTCCT+AGG 0.533667 5:+15234707 MsG0580025203.01.T01:three_prime_UTR
GTTCTAAATGCATAGTGATA+GGG 0.535332 5:+15234556 MsG0580025203.01.T01:three_prime_UTR
AATTAGGTTGGGAAAGCTGG+TGG 0.535794 5:+15229736 MsG0580025203.01.T01:intron
GAGAAATGAAAGAGCGTGAG+TGG 0.542803 5:-15229037 None:intergenic
CTAATTGGGCTATTAGCACA+TGG 0.547951 5:-15234596 None:intergenic
GGTTGGGAAAGCTGGTGGAA+AGG 0.549667 5:+15229741 MsG0580025203.01.T01:intron
AGGATCCTAACAAGCCTAAG+AGG 0.555088 5:+15229341 MsG0580025203.01.T01:CDS
AAAACGAAGAAAGCACTTGG+AGG 0.557236 5:-15229364 None:intergenic
TTTGTTAGGTTGAAGCGCAA+GGG 0.561375 5:+15229283 MsG0580025203.01.T01:intron
TAAGGCTCCATTCAATGCTA+AGG 0.574542 5:+15229886 MsG0580025203.01.T01:CDS
TCTCACAGATGGCCGAACGT+TGG 0.577272 5:+15233601 MsG0580025203.01.T01:CDS
GACTGAGAAGAATGCTTCTG+AGG 0.577758 5:+15230068 MsG0580025203.01.T01:intron
TACATTGAGTGTTAGTAACA+GGG 0.581057 5:+15234427 MsG0580025203.01.T01:CDS
GGAAAATGAAAATTGAAGCA+CGG 0.582679 5:-15228988 None:intergenic
AAACCCTGAACCTTAAGTGT+GGG 0.587818 5:-15232556 None:intergenic
ATGAAAACGAAGAAAGCACT+TGG 0.589018 5:-15229367 None:intergenic
TTTGGAAGAGATATACCTGC+CGG 0.598796 5:+15234148 MsG0580025203.01.T01:CDS
AAGCAACAAGTCCGTTGCTG+TGG 0.608709 5:+15229625 MsG0580025203.01.T01:CDS
AAGCACGCGGATCGCTGACG+TGG 0.614721 5:+15228935 None:intergenic
TAGCACATGGTTGTGACAGA+TGG 0.615844 5:-15234583 None:intergenic
GTTATCAGCAGGTTTAGCAT+CGG 0.618036 5:-15229169 None:intergenic
AACCCTGAACCTTAAGTGTG+GGG 0.620430 5:-15232555 None:intergenic
TTAGGTCTGAGTTCAGAGAG+AGG 0.622758 5:+15229585 MsG0580025203.01.T01:intron
CAGAAATCTCACCACAGCAA+CGG 0.627421 5:-15229636 None:intergenic
ATCGGAAACAGCTTTCGGCA+TGG 0.634546 5:-15229151 None:intergenic
GAAACCCTGAACCTTAAGTG+TGG 0.635274 5:-15232557 None:intergenic
GCAAGGTTGAGGAATCATGC+AGG 0.636437 5:+15234392 MsG0580025203.01.T01:CDS
GTAAATGATGACGATGAGGA+TGG 0.644374 5:+15230120 MsG0580025203.01.T01:CDS
GCAGCCAAGAGTCTCACAGA+TGG 0.652459 5:+15233590 MsG0580025203.01.T01:intron
TAAGCAATCGAAGAAAGCGA+AGG 0.658279 5:+15229321 MsG0580025203.01.T01:CDS
AGAAATGAAAGAGCGTGAGT+GGG 0.674614 5:-15229036 None:intergenic
TAAGGCTGATAAGTTGAAGG+AGG 0.688265 5:+15229904 MsG0580025203.01.T01:CDS
TGAAGTAAATGATGACGATG+AGG 0.722514 5:+15230116 MsG0580025203.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAATTAT+TGG - Chr5:15230700-15230719 None:intergenic 0.0%
!! AAAACAAATGTATAAATAAA+GGG + Chr5:15231799-15231818 MsG0580025203.01.T01:intron 10.0%
!! AAATAAATAAATTATTGGAA+TGG - Chr5:15230695-15230714 None:intergenic 10.0%
!! TAAAACAAATGTATAAATAA+AGG + Chr5:15231798-15231817 MsG0580025203.01.T01:intron 10.0%
!!! AGAATAATTTTCATTATTAT+AGG + Chr5:15230297-15230316 MsG0580025203.01.T01:intron 10.0%
!!! GTATTATTCTATAATTTTTT+AGG + Chr5:15230171-15230190 MsG0580025203.01.T01:intron 10.0%
!!! TACATTTTTTATTATAACAA+GGG - Chr5:15232271-15232290 None:intergenic 10.0%
!!! TTACATTTTTTATTATAACA+AGG - Chr5:15232272-15232291 None:intergenic 10.0%
!!! TTTAATTTTTAAATGATTGT+CGG + Chr5:15231684-15231703 MsG0580025203.01.T01:intron 10.0%
!!! TTTTTTTGTATTTTTTTACA+AGG + Chr5:15230721-15230740 MsG0580025203.01.T01:intron 10.0%
!! AAAATTGTGTCAATTAAATT+GGG - Chr5:15231763-15231782 None:intergenic 15.0%
!! AAACAAATGTATAAATAAAG+GGG + Chr5:15231800-15231819 MsG0580025203.01.T01:intron 15.0%
!! AAAGAAATATGTTTGAAAAA+TGG - Chr5:15234199-15234218 None:intergenic 15.0%
!! AGTTACATGTTTATAAAAAT+AGG + Chr5:15230802-15230821 MsG0580025203.01.T01:intron 15.0%
!! GTATTAATAATAATAAAGGT+GGG - Chr5:15230443-15230462 None:intergenic 15.0%
!! GTCTGTATTAATAATAATAA+AGG - Chr5:15230447-15230466 None:intergenic 15.0%
!! TAATGTGAAAATAATGAATT+TGG - Chr5:15232202-15232221 None:intergenic 15.0%
!! TGTATTAATAATAATAAAGG+TGG - Chr5:15230444-15230463 None:intergenic 15.0%
!! TTCATAAAAATCAAATTCAA+CGG - Chr5:15229679-15229698 None:intergenic 15.0%
!! TTTGATAAATACATGATAAA+TGG - Chr5:15233243-15233262 None:intergenic 15.0%
!!! ATAAAATGCTATATTTCTTT+TGG + Chr5:15231963-15231982 MsG0580025203.01.T01:intron 15.0%
!!! TAATTTTCATTATTATAGGT+TGG + Chr5:15230301-15230320 MsG0580025203.01.T01:intron 15.0%
!!! TTTCATTATTTTATGTTTTC+AGG + Chr5:15230215-15230234 MsG0580025203.01.T01:intron 15.0%
!!! TTTTTGATTTTTTGTTTGTT+AGG + Chr5:15229269-15229288 MsG0580025203.01.T01:intron 15.0%
!! AAAATAGAACCTTGAAAAAT+TGG - Chr5:15232748-15232767 None:intergenic 20.0%
!! ACATGTTTATAAAAATAGGT+AGG + Chr5:15230806-15230825 MsG0580025203.01.T01:intron 20.0%
!! ACTAAAATATTCAATCACTT+GGG + Chr5:15232309-15232328 MsG0580025203.01.T01:intron 20.0%
!! ATCTTTGCTTATTTGATTAA+AGG + Chr5:15233548-15233567 MsG0580025203.01.T01:intron 20.0%
!! ATTAAGCTATTTATCAAAAC+AGG + Chr5:15232949-15232968 MsG0580025203.01.T01:intron 20.0%
!! ATTTAATTCAGCTATATGAA+CGG + Chr5:15231205-15231224 MsG0580025203.01.T01:intron 20.0%
!! ATTTGAATTGAGTAGATTAT+GGG + Chr5:15231101-15231120 MsG0580025203.01.T01:intron 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - Chr5:15231764-15231783 None:intergenic 20.0%
!! CACTAAAATATTTAGATAGT+TGG - Chr5:15231721-15231740 None:intergenic 20.0%
!! CTATATTAATATACAAGCTT+TGG + Chr5:15230666-15230685 MsG0580025203.01.T01:intron 20.0%
!! TCTTTGCTTATTTGATTAAA+GGG + Chr5:15233549-15233568 MsG0580025203.01.T01:intron 20.0%
!!! AAAACTTGAGATGTTTTTAT+AGG + Chr5:15233051-15233070 MsG0580025203.01.T01:intron 20.0%
!!! AAAATAATGAATTTGGTTCA+TGG - Chr5:15232195-15232214 None:intergenic 20.0%
!!! AAATAATGAATTTGGTTCAT+GGG - Chr5:15232194-15232213 None:intergenic 20.0%
!!! ATTTTTGTTTTGCGTTTTTT+AGG + Chr5:15229567-15229586 MsG0580025203.01.T01:intron 20.0%
!!! CTACTTTTATTTCACTAATT+GGG - Chr5:15234613-15234632 None:intergenic 20.0%
!!! TAAATATACAAGCTTTTTCA+AGG + Chr5:15232780-15232799 MsG0580025203.01.T01:intron 20.0%
!!! TCTACTTTTATTTCACTAAT+TGG - Chr5:15234614-15234633 None:intergenic 20.0%
!!! TGAATATTTTAGTCTTATGA+TGG - Chr5:15232302-15232321 None:intergenic 20.0%
!!! TGTTTCTAAAATCTACTAAA+AGG + Chr5:15233206-15233225 MsG0580025203.01.T01:intron 20.0%
!!! TTGTGATTTATGTGTATTTT+AGG + Chr5:15229862-15229881 MsG0580025203.01.T01:intron 20.0%
!!! TTTATATCTGTAATTTGCTT+TGG + Chr5:15233383-15233402 MsG0580025203.01.T01:intron 20.0%
!!! TTTATGTGTATTTTAGGATA+AGG + Chr5:15229868-15229887 MsG0580025203.01.T01:intron 20.0%
!!! TTTGGAGAGAATAATTATTT+TGG - Chr5:15234747-15234766 None:intergenic 20.0%
! AAAGCTTGTATATTTAGCAA+AGG - Chr5:15232776-15232795 None:intergenic 25.0%
! AATATCCTTGTATATACTGA+AGG - Chr5:15233930-15233949 None:intergenic 25.0%
! AGAAAATGTCATCATACAAA+TGG + Chr5:15231605-15231624 MsG0580025203.01.T01:intron 25.0%
! AGAATCAAATCAAACTTCAA+CGG - Chr5:15229543-15229562 None:intergenic 25.0%
! AGAGGAAAAGTTAAAATTGA+TGG - Chr5:15232415-15232434 None:intergenic 25.0%
! AGTTGAAATGCACATATTAT+TGG + Chr5:15232044-15232063 MsG0580025203.01.T01:intron 25.0%
! ATAGTAGATTCAAATGATCT+AGG - Chr5:15232124-15232143 None:intergenic 25.0%
! ATATGAAAAATCTTGATCCA+AGG + Chr5:15233416-15233435 MsG0580025203.01.T01:intron 25.0%
! CTTAAGCCACAAAAAAAAAT+CGG - Chr5:15230576-15230595 None:intergenic 25.0%
! CTTGAACAAAAAAGAGAAAT+TGG + Chr5:15230753-15230772 MsG0580025203.01.T01:intron 25.0%
! CTTGATATAGAAACAACTTA+TGG + Chr5:15232891-15232910 MsG0580025203.01.T01:intron 25.0%
! GACTAAAATATTCAATCACT+TGG + Chr5:15232308-15232327 MsG0580025203.01.T01:intron 25.0%
! GATTTGAATTGAGTAGATTA+TGG + Chr5:15231100-15231119 MsG0580025203.01.T01:intron 25.0%
! GCAATTAAAAACATTTCATG+TGG + Chr5:15233332-15233351 MsG0580025203.01.T01:intron 25.0%
! GTTTATGTGTAAATATTCCT+AGG + Chr5:15234707-15234726 MsG0580025203.01.T01:three_prime_UTR 25.0%
! TAAATTTCCCATACTTTCAA+AGG + Chr5:15234171-15234190 MsG0580025203.01.T01:intron 25.0%
! TAGAAAATCTCAATGCAATT+TGG + Chr5:15234630-15234649 MsG0580025203.01.T01:three_prime_UTR 25.0%
! TCTTAAACATGACAGTTAAA+AGG - Chr5:15234662-15234681 None:intergenic 25.0%
! TTATTAGCTATGAAAAGAGT+AGG - Chr5:15231877-15231896 None:intergenic 25.0%
! TTTAGGAGAACTTATAGAAA+TGG + Chr5:15232815-15232834 MsG0580025203.01.T01:intron 25.0%
!! AAATTCCCAAAACTTTTCAT+TGG + Chr5:15232627-15232646 MsG0580025203.01.T01:intron 25.0%
!! AACAAACCAATGAAAAGTTT+TGG - Chr5:15232636-15232655 None:intergenic 25.0%
!! AATGCTTTAAATAATCGAGA+TGG + Chr5:15234246-15234265 MsG0580025203.01.T01:intron 25.0%
!! ACAAACCAATGAAAAGTTTT+GGG - Chr5:15232635-15232654 None:intergenic 25.0%
!! ATGCTTTAAATAATCGAGAT+GGG + Chr5:15234247-15234266 MsG0580025203.01.T01:intron 25.0%
!! ATTATAGGTTGGAATGTAAT+TGG + Chr5:15230312-15230331 MsG0580025203.01.T01:intron 25.0%
!! CAATGATATTTTGTGTTTCT+TGG + Chr5:15232981-15233000 MsG0580025203.01.T01:intron 25.0%
!! CTAAATCTTAATTAGCGTTT+TGG + Chr5:15229825-15229844 MsG0580025203.01.T01:intron 25.0%
!! TCTAACGTGATTTTTGAATT+AGG + Chr5:15229720-15229739 MsG0580025203.01.T01:intron 25.0%
!! TCTTTTCGTTTATTGAGTTT+TGG + Chr5:15229490-15229509 MsG0580025203.01.T01:intron 25.0%
!! TGAATAATAGTCTAGTTTCA+TGG + Chr5:15230982-15231001 MsG0580025203.01.T01:intron 25.0%
!! TTATAGGTTGGAATGTAATT+GGG + Chr5:15230313-15230332 MsG0580025203.01.T01:intron 25.0%
!!! AAGTACTAATTTGTTCAACA+AGG - Chr5:15230950-15230969 None:intergenic 25.0%
!!! ACATAACCGATTTTTTTTTG+TGG + Chr5:15230567-15230586 MsG0580025203.01.T01:intron 25.0%
!!! ATATTGCAGTTGATATGTTT+TGG - Chr5:15231509-15231528 None:intergenic 25.0%
!!! ATTAAAATGATTTTAGGGTG+TGG + Chr5:15232483-15232502 MsG0580025203.01.T01:intron 25.0%
!!! ATTGGTTTGTTTTGTTTTGT+AGG + Chr5:15232645-15232664 MsG0580025203.01.T01:intron 25.0%
!!! CATTATTTTATGTTTTCAGG+AGG + Chr5:15230218-15230237 MsG0580025203.01.T01:intron 25.0%
!!! GATTAAAGGGTGTTATTTAA+TGG + Chr5:15233562-15233581 MsG0580025203.01.T01:intron 25.0%
!!! GTTTTTAATTGCATGTTTGA+GGG - Chr5:15233324-15233343 None:intergenic 25.0%
!!! TAAACTTTGAGATACATGTT+TGG + Chr5:15231078-15231097 MsG0580025203.01.T01:intron 25.0%
!!! TGTTTTTAATTGCATGTTTG+AGG - Chr5:15233325-15233344 None:intergenic 25.0%
!!! TTAAAATGATTTTAGGGTGT+GGG + Chr5:15232484-15232503 MsG0580025203.01.T01:intron 25.0%
!!! TTGCTGATTTGAACTAATTT+TGG + Chr5:15230038-15230057 MsG0580025203.01.T01:intron 25.0%
AAAATGTGAAAGCAAAACAC+CGG - Chr5:15233711-15233730 None:intergenic 30.0%
AACTGCGTGTTTGTATATTA+GGG - Chr5:15230611-15230630 None:intergenic 30.0%
AATACTCTTTAGGCTATGTT+TGG + Chr5:15233124-15233143 MsG0580025203.01.T01:intron 30.0%
AATCTTTCATGAGACTTGAT+TGG + Chr5:15234273-15234292 MsG0580025203.01.T01:intron 30.0%
AGAGAGAAGAAGAAGATAAA+GGG - Chr5:15229088-15229107 None:intergenic 30.0%
AGCAAATCAATTAGCCAAAT+AGG - Chr5:15234334-15234353 None:intergenic 30.0%
ATACTCTTTAGGCTATGTTT+GGG + Chr5:15233125-15233144 MsG0580025203.01.T01:intron 30.0%
ATAGAACCTTGAAAAATTGG+AGG - Chr5:15232745-15232764 None:intergenic 30.0%
ATCAAGGTTACACTTTCATT+GGG + Chr5:15231549-15231568 MsG0580025203.01.T01:intron 30.0%
ATTTACACTCAGAAATGCAA+TGG - Chr5:15233903-15233922 None:intergenic 30.0%
CAAATCAATTAGCCAAATAG+GGG - Chr5:15234332-15234351 None:intergenic 30.0%
CATATCAACTGCAATATTGA+TGG + Chr5:15231512-15231531 MsG0580025203.01.T01:intron 30.0%
CGTGCAACTAAAAAAGTAAA+CGG + Chr5:15230834-15230853 MsG0580025203.01.T01:intron 30.0%
CTAGACTATTATTCACTTCT+AGG - Chr5:15230977-15230996 None:intergenic 30.0%
CTAGGTTGTAAAGATACTTT+GGG - Chr5:15232106-15232125 None:intergenic 30.0%
GAAAATGAAAATTGAAGCAC+GGG - Chr5:15228990-15229009 None:intergenic 30.0%
GAATTTCATGAAACACTCTA+GGG + Chr5:15231639-15231658 MsG0580025203.01.T01:intron 30.0%
GCAAATCAATTAGCCAAATA+GGG - Chr5:15234333-15234352 None:intergenic 30.0%
GGAAAAGTTAAAATTGATGG+AGG - Chr5:15232412-15232431 None:intergenic 30.0%
GGAAAATGAAAATTGAAGCA+CGG - Chr5:15228991-15229010 None:intergenic 30.0%
GTAACATACTTATATGCTGT+TGG + Chr5:15231016-15231035 MsG0580025203.01.T01:intron 30.0%
GTACAACATTAGTCAGTTAT+AGG - Chr5:15234360-15234379 None:intergenic 30.0%
GTGCAACTAAAAAAGTAAAC+GGG + Chr5:15230835-15230854 MsG0580025203.01.T01:intron 30.0%
TAACTGCGTGTTTGTATATT+AGG - Chr5:15230612-15230631 None:intergenic 30.0%
TAAGTTTCTTCTCCAAAGTT+GGG + Chr5:15231339-15231358 MsG0580025203.01.T01:intron 30.0%
TACATTGAGTGTTAGTAACA+GGG + Chr5:15234427-15234446 MsG0580025203.01.T01:CDS 30.0%
TAGAGAGAAGAAGAAGATAA+AGG - Chr5:15229089-15229108 None:intergenic 30.0%
TAGGTTGTAAAGATACTTTG+GGG - Chr5:15232105-15232124 None:intergenic 30.0%
TAGTTTCATGGACAAAACTT+GGG + Chr5:15230994-15231013 MsG0580025203.01.T01:intron 30.0%
TATCACTTGTACAAAGCAAT+TGG - Chr5:15231255-15231274 None:intergenic 30.0%
TATGCATTTAAATACATGCG+AGG - Chr5:15233806-15233825 None:intergenic 30.0%
TCAAAGACTGATCTAACATA+GGG - Chr5:15233965-15233984 None:intergenic 30.0%
TCTACTTCTCCAAATAATCA+TGG - Chr5:15231453-15231472 None:intergenic 30.0%
TCTAGGTTGTAAAGATACTT+TGG - Chr5:15232107-15232126 None:intergenic 30.0%
TGAATTTCATGAAACACTCT+AGG + Chr5:15231638-15231657 MsG0580025203.01.T01:intron 30.0%
TGTATTGAGAAGGATAAAGA+GGG - Chr5:15229012-15229031 None:intergenic 30.0%
TTAAGTCTGCCATGATTATT+TGG + Chr5:15231441-15231460 MsG0580025203.01.T01:intron 30.0%
TTAAGTTTCTTCTCCAAAGT+TGG + Chr5:15231338-15231357 MsG0580025203.01.T01:intron 30.0%
TTACATTGAGTGTTAGTAAC+AGG + Chr5:15234426-15234445 MsG0580025203.01.T01:CDS 30.0%
TTCAAAGACTGATCTAACAT+AGG - Chr5:15233966-15233985 None:intergenic 30.0%
TTGTATTGAGAAGGATAAAG+AGG - Chr5:15229013-15229032 None:intergenic 30.0%
TTTGTCCTTCAGTATATACA+AGG + Chr5:15233922-15233941 MsG0580025203.01.T01:intron 30.0%
! AAATGGATCCTTTGAAAGTA+TGG - Chr5:15234182-15234201 None:intergenic 30.0%
! AAATGTTGATTGACTGTACT+TGG + Chr5:15230899-15230918 MsG0580025203.01.T01:intron 30.0%
! AAGAAGAAGATAAAGGGTTT+TGG - Chr5:15229082-15229101 None:intergenic 30.0%
! AATGGATCCTTTGAAAGTAT+GGG - Chr5:15234181-15234200 None:intergenic 30.0%
! ACGTGATTTTTGAATTAGGT+TGG + Chr5:15229724-15229743 MsG0580025203.01.T01:intron 30.0%
! CGTGATTTTTGAATTAGGTT+GGG + Chr5:15229725-15229744 MsG0580025203.01.T01:intron 30.0%
! CTGACTAATGTTGTACATTT+TGG + Chr5:15234364-15234383 MsG0580025203.01.T01:intron 30.0%
! CTTCGTTTTCATGTAAGATT+CGG + Chr5:15229378-15229397 MsG0580025203.01.T01:intron 30.0%
! GGAGTCAAATATTCCAATTT+TGG + Chr5:15234105-15234124 MsG0580025203.01.T01:CDS 30.0%
! GGTATATCTCTTCCAAATTT+TGG - Chr5:15234145-15234164 None:intergenic 30.0%
! GTTCTAAATGCATAGTGATA+GGG + Chr5:15234556-15234575 MsG0580025203.01.T01:three_prime_UTR 30.0%
! TGAAAGTATGGGAAATTTAC+CGG - Chr5:15234170-15234189 None:intergenic 30.0%
! TTCACTGTTCTGATTTTACT+CGG + Chr5:15230002-15230021 MsG0580025203.01.T01:intron 30.0%
! TTTTTGTGGCTTAAGTGAAA+AGG + Chr5:15230581-15230600 MsG0580025203.01.T01:intron 30.0%
!! AATACAGACTCAGTTTGTTA+TGG + Chr5:15230458-15230477 MsG0580025203.01.T01:intron 30.0%
!! AGTTCTAAATGCATAGTGAT+AGG + Chr5:15234555-15234574 MsG0580025203.01.T01:three_prime_UTR 30.0%
!! TACATAACATTGGTTTCACT+GGG + Chr5:15233504-15233523 MsG0580025203.01.T01:intron 30.0%
!! TATTTTATGTTTTCAGGAGG+AGG + Chr5:15230221-15230240 MsG0580025203.01.T01:intron 30.0%
!!! AAAGTTTTGGGAATTTGTGA+AGG - Chr5:15232623-15232642 None:intergenic 30.0%
!!! AAGTTTTGGGAATTTGTGAA+GGG - Chr5:15232622-15232641 None:intergenic 30.0%
!!! ACATAGCCTAAAGAGTATTT+TGG - Chr5:15233123-15233142 None:intergenic 30.0%
AAAAATTGGAGGATGCAAGT+GGG - Chr5:15232734-15232753 None:intergenic 35.0%
AAAACGTCAATAGATCTTCG+AGG - Chr5:15234305-15234324 None:intergenic 35.0%
AAATGTGTAAGCATCCTAAG+AGG + Chr5:15231398-15231417 MsG0580025203.01.T01:intron 35.0%
AACCAATGTTATGTAGGATC+CGG - Chr5:15233499-15233518 None:intergenic 35.0%
AAGAGACTCACTTAATGACT+AGG + Chr5:15233991-15234010 MsG0580025203.01.T01:intron 35.0%
AAGATTATAGCAACAGTAGG+TGG + Chr5:15233745-15233764 MsG0580025203.01.T01:intron 35.0%
AATAATCCTTCAAGCCTCTT+AGG - Chr5:15231415-15231434 None:intergenic 35.0%
ACAAATTCACAAGTGGTTTG+AGG + Chr5:15231308-15231327 MsG0580025203.01.T01:intron 35.0%
ACAATGCGTGCTTACAATAT+GGG + Chr5:15229938-15229957 MsG0580025203.01.T01:CDS 35.0%
ACTTTATACTTCCCAACGTT+CGG - Chr5:15233616-15233635 None:intergenic 35.0%
AGAACAAATACACTCACTTC+TGG + Chr5:15234460-15234479 MsG0580025203.01.T01:CDS 35.0%
AGGTTGAGAAACAGAAACAA+TGG + Chr5:15232335-15232354 MsG0580025203.01.T01:intron 35.0%
ATATTCAATCACTTGGGTGA+AGG + Chr5:15232315-15232334 MsG0580025203.01.T01:intron 35.0%
ATCAACTGCAATATTGATGG+TGG + Chr5:15231515-15231534 MsG0580025203.01.T01:intron 35.0%
ATGCAGCCAAAATACTCTTT+AGG + Chr5:15233114-15233133 MsG0580025203.01.T01:intron 35.0%
ATTTGTGATTCTCTCTCATC+AGG + Chr5:15231578-15231597 MsG0580025203.01.T01:intron 35.0%
CAAAGACTGATCTAACATAG+GGG - Chr5:15233964-15233983 None:intergenic 35.0%
CAAGGTCATAATGCTTGTTT+AGG + Chr5:15232798-15232817 MsG0580025203.01.T01:intron 35.0%
CACATTTATGCTGAGATCTA+AGG - Chr5:15231385-15231404 None:intergenic 35.0%
CAGTGAAACCAATGTTATGT+AGG - Chr5:15233505-15233524 None:intergenic 35.0%
CATTTAAATACATGCGAGGA+TGG - Chr5:15233802-15233821 None:intergenic 35.0%
CGTGAATAACAGCATTCAAT+TGG - Chr5:15230507-15230526 None:intergenic 35.0%
CTAGTTTCATGGACAAAACT+TGG + Chr5:15230993-15231012 MsG0580025203.01.T01:intron 35.0%
GATCAAGGTTACACTTTCAT+TGG + Chr5:15231548-15231567 MsG0580025203.01.T01:intron 35.0%
GTACAAGTGATACACAAGTT+AGG + Chr5:15231263-15231282 MsG0580025203.01.T01:intron 35.0%
GTCATCATTTACTTCAGACT+TGG - Chr5:15230112-15230131 None:intergenic 35.0%
GTGATAGAGATTTCAAAGAG+AGG - Chr5:15232433-15232452 None:intergenic 35.0%
GTGATGAACAAACAGTTGTT+AGG + Chr5:15230362-15230381 MsG0580025203.01.T01:intron 35.0%
GTGCTAAAAGTTGTTCGAAT+CGG + Chr5:15229400-15229419 MsG0580025203.01.T01:intron 35.0%
GTTAGGTTTATATTAGCGCA+TGG + Chr5:15230379-15230398 MsG0580025203.01.T01:intron 35.0%
GTTGCTATAATCTTGCATAG+AGG - Chr5:15233739-15233758 None:intergenic 35.0%
TCCATTCCAGTTCCAAAATT+TGG + Chr5:15234130-15234149 MsG0580025203.01.T01:CDS 35.0%
TGATTGACTGTACTTGGATA+GGG + Chr5:15230905-15230924 MsG0580025203.01.T01:intron 35.0%
TGCAAGATTATAGCAACAGT+AGG + Chr5:15233742-15233761 MsG0580025203.01.T01:intron 35.0%
TGTTGCGACATAACCAAATT+TGG + Chr5:15233086-15233105 MsG0580025203.01.T01:intron 35.0%
TTAATTGCATGTTTGAGGGT+TGG - Chr5:15233320-15233339 None:intergenic 35.0%
TTAGGAATTACACATAGCAG+AGG + Chr5:15231281-15231300 MsG0580025203.01.T01:intron 35.0%
TTCTCCAATTTCTCACTCTT+TGG - Chr5:15234765-15234784 None:intergenic 35.0%
TTGATTGACTGTACTTGGAT+AGG + Chr5:15230904-15230923 MsG0580025203.01.T01:intron 35.0%
TTTGTGATTCTCTCTCATCA+GGG + Chr5:15231579-15231598 MsG0580025203.01.T01:intron 35.0%
! AGAAATTGGAGTTGATTCAC+TGG + Chr5:15230767-15230786 MsG0580025203.01.T01:intron 35.0%
! CTTTTCATCATTGACGAAGT+TGG + Chr5:15234031-15234050 MsG0580025203.01.T01:CDS 35.0%
! TCAACTGCAATATTGATGGT+GGG + Chr5:15231516-15231535 MsG0580025203.01.T01:intron 35.0%
! TGAAGTAAATGATGACGATG+AGG + Chr5:15230116-15230135 MsG0580025203.01.T01:CDS 35.0%
! TTATCAGCCTTAGCATTGAA+TGG - Chr5:15229896-15229915 None:intergenic 35.0%
! TTGCATCCTCCAATTTTTCA+AGG + Chr5:15232736-15232755 MsG0580025203.01.T01:CDS 35.0%
! TTTGAAGTTGTCACTCTTGA+TGG + Chr5:15232699-15232718 MsG0580025203.01.T01:CDS 35.0%
!! AGGGTGTTATTTAATGGCAT+TGG + Chr5:15233568-15233587 MsG0580025203.01.T01:intron 35.0%
!! AGTGGGTTTTTGTATTGAGA+AGG - Chr5:15229022-15229041 None:intergenic 35.0%
!! ATCATACAAATGGACTGAAG+TGG + Chr5:15231615-15231634 MsG0580025203.01.T01:intron 35.0%
!! ATGAAAACGAAGAAAGCACT+TGG - Chr5:15229370-15229389 None:intergenic 35.0%
!! CTACATAACATTGGTTTCAC+TGG + Chr5:15233503-15233522 MsG0580025203.01.T01:intron 35.0%
!! GGTTTTTGGAGGTTTTTGAA+AGG - Chr5:15233299-15233318 None:intergenic 35.0%
!! TTTGTGTTTCTTGGTGATGA+TGG + Chr5:15232990-15233009 MsG0580025203.01.T01:intron 35.0%
!!! TCCAAATTTTGGAACTGGAA+TGG - Chr5:15234134-15234153 None:intergenic 35.0%
!!! TCTCTTCCAAATTTTGGAAC+TGG - Chr5:15234139-15234158 None:intergenic 35.0%
AAACCCTGAACCTTAAGTGT+GGG - Chr5:15232559-15232578 None:intergenic 40.0%
ACCAATGTTATGTAGGATCC+GGG - Chr5:15233498-15233517 None:intergenic 40.0%
ACCAGCAAGAGAATAATGCA+AGG - Chr5:15231941-15231960 None:intergenic 40.0%
ACCTTGCATTATTCTCTTGC+TGG + Chr5:15231937-15231956 MsG0580025203.01.T01:intron 40.0%
ACTGGAATGGAAGCCAAAAT+TGG - Chr5:15234121-15234140 None:intergenic 40.0%
AGAATCACGAATCTCGAAGT+CGG - Chr5:15229211-15229230 None:intergenic 40.0%
AGGCACTACAAATTCACAAG+TGG + Chr5:15231301-15231320 MsG0580025203.01.T01:intron 40.0%
ATGCTAAACCTGCTGATAAC+CGG + Chr5:15229172-15229191 MsG0580025203.01.T01:CDS 40.0%
CTAATTGGGCTATTAGCACA+TGG - Chr5:15234599-15234618 None:intergenic 40.0%
CTCTCCAAAGAGTGAGAAAT+TGG + Chr5:15234758-15234777 MsG0580025203.01.T01:three_prime_UTR 40.0%
GAAAAATTGGAGGATGCAAG+TGG - Chr5:15232735-15232754 None:intergenic 40.0%
GACAATGCGTGCTTACAATA+TGG + Chr5:15229937-15229956 MsG0580025203.01.T01:CDS 40.0%
GATTGACTGTACTTGGATAG+GGG + Chr5:15230906-15230925 MsG0580025203.01.T01:intron 40.0%
GGCTGCATCTATTCCAAATT+TGG - Chr5:15233102-15233121 None:intergenic 40.0%
GTGTCAATTAAATTGGGACG+AGG - Chr5:15231757-15231776 None:intergenic 40.0%
GTTATCAGCAGGTTTAGCAT+CGG - Chr5:15229172-15229191 None:intergenic 40.0%
GTTCAGAGAGAGGTTTAAGA+AGG + Chr5:15229595-15229614 MsG0580025203.01.T01:CDS 40.0%
TAAGCAATCGAAGAAAGCGA+AGG + Chr5:15229321-15229340 MsG0580025203.01.T01:CDS 40.0%
TAAGGCTCCATTCAATGCTA+AGG + Chr5:15229886-15229905 MsG0580025203.01.T01:CDS 40.0%
TATGTTTGGGAGTTGGGTTT+GGG + Chr5:15233138-15233157 MsG0580025203.01.T01:intron 40.0%
TCATGTGGCATCAAGATTGA+CGG + Chr5:15233347-15233366 MsG0580025203.01.T01:intron 40.0%
TCGAAGAGAGAGAGAGAAAA+CGG - Chr5:15229113-15229132 None:intergenic 40.0%
TCGAGATTCGTGATTCTCAT+CGG + Chr5:15229214-15229233 MsG0580025203.01.T01:intron 40.0%
TTAGGCTATGTTTGGGAGTT+GGG + Chr5:15233132-15233151 MsG0580025203.01.T01:intron 40.0%
TTTAGGCTATGTTTGGGAGT+TGG + Chr5:15233131-15233150 MsG0580025203.01.T01:intron 40.0%
TTTGGAAGAGATATACCTGC+CGG + Chr5:15234148-15234167 MsG0580025203.01.T01:CDS 40.0%
TTTGGGAATTTGTGAAGGGA+TGG - Chr5:15232618-15232637 None:intergenic 40.0%
! AAGAATGCTTCTGAGGAAGA+AGG + Chr5:15230075-15230094 MsG0580025203.01.T01:CDS 40.0%
! ACACTCTAGGGATGATATAG+AGG + Chr5:15231651-15231670 MsG0580025203.01.T01:intron 40.0%
! AGAAATGAAAGAGCGTGAGT+GGG - Chr5:15229039-15229058 None:intergenic 40.0%
! GGAAAATGCTTTCTAGTGAC+AGG + Chr5:15232369-15232388 MsG0580025203.01.T01:intron 40.0%
! GTAAATGATGACGATGAGGA+TGG + Chr5:15230120-15230139 MsG0580025203.01.T01:CDS 40.0%
! TAAGGCTGATAAGTTGAAGG+AGG + Chr5:15229904-15229923 MsG0580025203.01.T01:CDS 40.0%
! TGCTAAGGCTGATAAGTTGA+AGG + Chr5:15229901-15229920 MsG0580025203.01.T01:CDS 40.0%
! TGGTAGAACTGTTTTCACCT+AGG - Chr5:15234727-15234746 None:intergenic 40.0%
! TTAGCATCGGAAACAGCTTT+CGG - Chr5:15229159-15229178 None:intergenic 40.0%
! TTTTGTGTACTGCTTGTCAC+CGG + Chr5:15233689-15233708 MsG0580025203.01.T01:intron 40.0%
!! AAAACGAAGAAAGCACTTGG+AGG - Chr5:15229367-15229386 None:intergenic 40.0%
!! CATTGACGAAGTTGGTAAGA+TGG + Chr5:15234039-15234058 MsG0580025203.01.T01:CDS 40.0%
!! TTGAATTAGGTTGGGAAAGC+TGG + Chr5:15229733-15229752 MsG0580025203.01.T01:intron 40.0%
!! TTTGTTAGGTTGAAGCGCAA+GGG + Chr5:15229283-15229302 MsG0580025203.01.T01:intron 40.0%
!!! CATGTTTGAGGGTTGGTTTT+TGG - Chr5:15233313-15233332 None:intergenic 40.0%
!!! CCAAGACTTTTAGAACTGCA+GGG - Chr5:15234087-15234106 None:intergenic 40.0%
!!! TCCAAGACTTTTAGAACTGC+AGG - Chr5:15234088-15234107 None:intergenic 40.0%
AAACCCCACACTTAAGGTTC+AGG + Chr5:15232552-15232571 MsG0580025203.01.T01:CDS 45.0%
AACCCCACACTTAAGGTTCA+GGG + Chr5:15232553-15232572 MsG0580025203.01.T01:CDS 45.0%
AACCCTGAACCTTAAGTGTG+GGG - Chr5:15232558-15232577 None:intergenic 45.0%
AACCTTAAGTGTGGGGTTTG+AGG - Chr5:15232551-15232570 None:intergenic 45.0%
AAGCATCCTAAGAGGCTTGA+AGG + Chr5:15231406-15231425 MsG0580025203.01.T01:intron 45.0%
AAGTTAGAGTTGCAGGTGAG+AGG + Chr5:15232670-15232689 MsG0580025203.01.T01:CDS 45.0%
ACACTGCACATATCAGTCCT+TGG - Chr5:15233436-15233455 None:intergenic 45.0%
ACACTTGCAAGACCCAACTT+TGG - Chr5:15231354-15231373 None:intergenic 45.0%
ACCCGGATCCTACATAACAT+TGG + Chr5:15233494-15233513 MsG0580025203.01.T01:intron 45.0%
AGGAGGATGAGGAGTAAAGT+TGG + Chr5:15230238-15230257 MsG0580025203.01.T01:intron 45.0%
AGGATCCTAACAAGCCTAAG+AGG + Chr5:15229341-15229360 MsG0580025203.01.T01:CDS 45.0%
AGGATGAGGAGTAAAGTTGG+TGG + Chr5:15230241-15230260 MsG0580025203.01.T01:intron 45.0%
AGTATGGGAAATTTACCGGC+AGG - Chr5:15234166-15234185 None:intergenic 45.0%
AGTCGGAAGAAGAATCTCAC+CGG - Chr5:15229194-15229213 None:intergenic 45.0%
AGTTAGAGTTGCAGGTGAGA+GGG + Chr5:15232671-15232690 MsG0580025203.01.T01:CDS 45.0%
CAGAAATCTCACCACAGCAA+CGG - Chr5:15229639-15229658 None:intergenic 45.0%
CTATGTTTGGGAGTTGGGTT+TGG + Chr5:15233137-15233156 MsG0580025203.01.T01:intron 45.0%
GAAACAGAAACAATGGCTGC+TGG + Chr5:15232342-15232361 MsG0580025203.01.T01:intron 45.0%
GAAACCCTGAACCTTAAGTG+TGG - Chr5:15232560-15232579 None:intergenic 45.0%
GACTGAGAAGAATGCTTCTG+AGG + Chr5:15230068-15230087 MsG0580025203.01.T01:intron 45.0%
GGTGGGAGTTTCAAAGATCA+AGG + Chr5:15231533-15231552 MsG0580025203.01.T01:intron 45.0%
GTAGGTGAAGTTAGAGTTGC+AGG + Chr5:15232663-15232682 MsG0580025203.01.T01:intron 45.0%
TAGCACATGGTTGTGACAGA+TGG - Chr5:15234586-15234605 None:intergenic 45.0%
TCTTCTGAACTCACGCTATG+TGG + Chr5:15234521-15234540 MsG0580025203.01.T01:three_prime_UTR 45.0%
TTAGGTCTGAGTTCAGAGAG+AGG + Chr5:15229585-15229604 MsG0580025203.01.T01:intron 45.0%
TTGATGGAGGAATCACTCAC+CGG - Chr5:15232399-15232418 None:intergenic 45.0%
TTTGTGAAGGGATGGTGTGA+AGG - Chr5:15232610-15232629 None:intergenic 45.0%
! ACACTCACTTCTGGAAGATC+TGG + Chr5:15234469-15234488 MsG0580025203.01.T01:CDS 45.0%
! CTGACTGCTGTTACTTCATG+TGG + Chr5:15233457-15233476 MsG0580025203.01.T01:intron 45.0%
! GAGAAATGAAAGAGCGTGAG+TGG - Chr5:15229040-15229059 None:intergenic 45.0%
!! AATTAGGTTGGGAAAGCTGG+TGG + Chr5:15229736-15229755 MsG0580025203.01.T01:intron 45.0%
!! AGTAAAGTTGGTGGTGCTGA+AGG + Chr5:15230250-15230269 MsG0580025203.01.T01:intron 45.0%
!! ATGTTTTCAGGAGGAGGATG+AGG + Chr5:15230227-15230246 MsG0580025203.01.T01:intron 45.0%
!! CCCTGCAGTTCTAAAAGTCT+TGG + Chr5:15234084-15234103 MsG0580025203.01.T01:CDS 45.0%
!! GTTTGTTAGGTTGAAGCGCA+AGG + Chr5:15229282-15229301 MsG0580025203.01.T01:intron 45.0%
!! TGTACATTTTGGCAGTCGCA+AGG + Chr5:15234375-15234394 MsG0580025203.01.T01:intron 45.0%
!!! GACGTTTTGAAGCCCCTATT+TGG + Chr5:15234317-15234336 MsG0580025203.01.T01:intron 45.0%
!!! GTTTGAGGGTTGGTTTTTGG+AGG - Chr5:15233310-15233329 None:intergenic 45.0%
!! AAATAAATAAATAAATAAAC+TGG - Chr5:15231906-15231925 None:intergenic 5.0%
!!! AATTTATTAAAATGATTTTA+GGG + Chr5:15232478-15232497 MsG0580025203.01.T01:intron 5.0%
!!! TAATTTATTAAAATGATTTT+AGG + Chr5:15232477-15232496 MsG0580025203.01.T01:intron 5.0%
AAGCAACAAGTCCGTTGCTG+TGG + Chr5:15229625-15229644 MsG0580025203.01.T01:CDS 50.0%
AAGCTCTGTCTGATGCTGTG+AGG + Chr5:15229770-15229789 MsG0580025203.01.T01:intron 50.0%
AATTGAAGCACGGGTTTGCG+CGG - Chr5:15228981-15229000 None:intergenic 50.0%
ACTAGCACTGCCTGAGTTAC+AGG + Chr5:15233657-15233676 MsG0580025203.01.T01:CDS 50.0%
AGCAAGCTCACCTGTAACTC+AGG - Chr5:15233670-15233689 None:intergenic 50.0%
AGCCTCAAACCCCACACTTA+AGG + Chr5:15232546-15232565 MsG0580025203.01.T01:CDS 50.0%
AGGGATGGTGTGAAGGAAAG+AGG - Chr5:15232603-15232622 None:intergenic 50.0%
ATCGGAAACAGCTTTCGGCA+TGG - Chr5:15229154-15229173 None:intergenic 50.0%
CAGCTTTCGGCATGGTGAAA+CGG - Chr5:15229146-15229165 None:intergenic 50.0%
GAAACAATGGCTGCTGGTAC+TGG + Chr5:15232348-15232367 MsG0580025203.01.T01:intron 50.0%
GCAAGGTTGAGGAATCATGC+AGG + Chr5:15234392-15234411 MsG0580025203.01.T01:CDS 50.0%
GGAAAGCTGGTGGAAAGGAA+TGG + Chr5:15229746-15229765 MsG0580025203.01.T01:CDS 50.0%
TTTGGGAGTTGGGTTTGGGA+AGG + Chr5:15233142-15233161 MsG0580025203.01.T01:intron 50.0%
! AAAGCACTTGGAGGCCTCTT+AGG - Chr5:15229358-15229377 None:intergenic 50.0%
! CTTTCTAGTGACAGGTCCTC+CGG + Chr5:15232377-15232396 MsG0580025203.01.T01:intron 50.0%
! GAATCTCACCGGTTATCAGC+AGG - Chr5:15229183-15229202 None:intergenic 50.0%
! TGTGGGGTTTGAGGCTTTGA+GGG - Chr5:15232542-15232561 None:intergenic 50.0%
! TTTTGGCAGTCGCAAGGTTG+AGG + Chr5:15234381-15234400 MsG0580025203.01.T01:intron 50.0%
!! ACAGCAACGGACTTGTTGCT+TGG - Chr5:15229626-15229645 None:intergenic 50.0%
ACTTGGATAGGGGTCGAGGA+AGG + Chr5:15230916-15230935 MsG0580025203.01.T01:intron 55.0%
AGAGTTGCAGGTGAGAGGGT+TGG + Chr5:15232675-15232694 MsG0580025203.01.T01:CDS 55.0%
ATGGAGGAATCACTCACCGG+AGG - Chr5:15232396-15232415 None:intergenic 55.0%
ATTGAAGCACGGGTTTGCGC+GGG - Chr5:15228980-15228999 None:intergenic 55.0%
CTCACAGATGGCCGAACGTT+GGG + Chr5:15233602-15233621 MsG0580025203.01.T01:CDS 55.0%
CTGTACTTGGATAGGGGTCG+AGG + Chr5:15230912-15230931 MsG0580025203.01.T01:intron 55.0%
GCAGCCAAGAGTCTCACAGA+TGG + Chr5:15233590-15233609 MsG0580025203.01.T01:intron 55.0%
GGTTGGGAAAGCTGGTGGAA+AGG + Chr5:15229741-15229760 MsG0580025203.01.T01:intron 55.0%
TCGGCCATCTGTGAGACTCT+TGG - Chr5:15233597-15233616 None:intergenic 55.0%
TCTCACAGATGGCCGAACGT+TGG + Chr5:15233601-15233620 MsG0580025203.01.T01:CDS 55.0%
TGGCAGCAGAGCAAACAACC+CGG + Chr5:15233477-15233496 MsG0580025203.01.T01:intron 55.0%
! GGAGGCCTCTTAGGCTTGTT+AGG - Chr5:15229349-15229368 None:intergenic 55.0%
! GGTGCTGAAGGAAGAAGCGT+AGG + Chr5:15230262-15230281 MsG0580025203.01.T01:intron 55.0%
! GTGTGGGGTTTGAGGCTTTG+AGG - Chr5:15232543-15232562 None:intergenic 55.0%
AGGGGTCGAGGAAGGAAGGA+GGG + Chr5:15230924-15230943 MsG0580025203.01.T01:intron 60.0%
GGATAGGGGTCGAGGAAGGA+AGG + Chr5:15230920-15230939 MsG0580025203.01.T01:intron 60.0%
TAGGGGTCGAGGAAGGAAGG+AGG + Chr5:15230923-15230942 MsG0580025203.01.T01:intron 60.0%
! AGGTTGAAGCGCAAGGGCGC+TGG + Chr5:15229289-15229308 MsG0580025203.01.T01:intron 65.0%
!! AAGCGCAAGGGCGCTGGTAC+TGG + Chr5:15229295-15229314 MsG0580025203.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 15228949 15234819 15228949 ID=MsG0580025203.01;Name=MsG0580025203.01
Chr5 mRNA 15228949 15234819 15228949 ID=MsG0580025203.01.T01;Parent=MsG0580025203.01;Name=MsG0580025203.01.T01;_AED=0.40;_eAED=0.41;_QI=0|0.9|0.90|1|1|1|11|314|381
Chr5 exon 15228949 15229193 15228949 ID=MsG0580025203.01.T01:exon:20830;Parent=MsG0580025203.01.T01
Chr5 exon 15229291 15229389 15229291 ID=MsG0580025203.01.T01:exon:20831;Parent=MsG0580025203.01.T01
Chr5 exon 15229589 15229646 15229589 ID=MsG0580025203.01.T01:exon:20832;Parent=MsG0580025203.01.T01
Chr5 exon 15229742 15229786 15229742 ID=MsG0580025203.01.T01:exon:20833;Parent=MsG0580025203.01.T01
Chr5 exon 15229884 15229964 15229884 ID=MsG0580025203.01.T01:exon:20834;Parent=MsG0580025203.01.T01
Chr5 exon 15230069 15230149 15230069 ID=MsG0580025203.01.T01:exon:20835;Parent=MsG0580025203.01.T01
Chr5 exon 15232499 15232586 15232499 ID=MsG0580025203.01.T01:exon:20836;Parent=MsG0580025203.01.T01
Chr5 exon 15232667 15232757 15232667 ID=MsG0580025203.01.T01:exon:20837;Parent=MsG0580025203.01.T01
Chr5 exon 15233594 15233678 15233594 ID=MsG0580025203.01.T01:exon:20838;Parent=MsG0580025203.01.T01
Chr5 exon 15234013 15234169 15234013 ID=MsG0580025203.01.T01:exon:20839;Parent=MsG0580025203.01.T01
Chr5 exon 15234390 15234819 15234390 ID=MsG0580025203.01.T01:exon:20840;Parent=MsG0580025203.01.T01
Chr5 CDS 15228949 15229193 15228949 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15229291 15229389 15229291 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15229589 15229646 15229589 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15229742 15229786 15229742 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15229884 15229964 15229884 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15230069 15230149 15230069 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15232499 15232586 15232499 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15232667 15232757 15232667 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15233594 15233678 15233594 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15234013 15234169 15234013 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 CDS 15234390 15234505 15234390 ID=MsG0580025203.01.T01:cds;Parent=MsG0580025203.01.T01
Chr5 three_prime_UTR 15234506 15234819 15234506 ID=MsG0580025203.01.T01:three_prime_utr;Parent=MsG0580025203.01.T01
Gene Sequence

>MsG0580025203.01.T01

CTGACGTGGCACAAAAATATTTCATTATCCCGCGCAAACCCGTGCTTCAATTTTCATTTTCCCTCTTTATCCTTCTCAATACAAAAACCCACTCACGCTCTTTCATTTCTCACATTTTCATCTTCACTCTCCAAAACCCTTTATCTTCTTCTTCTCTCTAACCGTTTTCTCTCTCTCTCTTCGAAGTTCAATCACCGTTTCACCATGCCGAAAGCTGTTTCCGATGCTAAACCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGTACTGGAACTAAGCAATCGAAGAAAGCGAAGGATCCTAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGAGGTTTAAGAAGGAGAATCCAAGCAACAAGTCCGTTGCTGTGGTTGGGAAAGCTGGTGGAAAGGAATGGAAAGCTCTGTCTGATGCTGATAAGGCTCCATTCAATGCTAAGGCTGATAAGTTGAAGGAGGAGTATGAGAAGACAATGCGTGCTTACAATATGGGAATTACTGAGAAGAATGCTTCTGAGGAAGAAGGATCTGAGAAGTCCAAGTCTGAAGTAAATGATGACGATGAGGATGGTGATGATGGTGTGGGAAAAAGCACTCTTATTATGAGAGTCTTCGAATCCCTCAAAGCCTCAAACCCCACACTTAAGGTTCAGGGTTTCTACACACGTGAAGTTAGAGTTGCAGGTGAGAGGGTTGGTTTTGAAGTTGTCACTCTTGATGGTCGCACTTGCCCACTTGCATCCTCCAATTTTTCAAGCCAAGAGTCTCACAGATGGCCGAACGTTGGGAAGTATAAAGTTGATGTAGCATCTTTTGAGTCACTAGCACTGCCTGAGTTACAGGTTAGAGAAGACACTGATCTTTTCATCATTGACGAAGTTGGTAAGATGGAGTTATATAGTTCGTCGTTCTTCCCTGCAGTTCTAAAAGTCTTGGAGTCAAATATTCCAATTTTGGCTTCCATTCCAGTTCCAAAATTTGGAAGAGATATACCTGCCGTCGCAAGGTTGAGGAATCATGCAGGAGCAACTTTGTTTACATTGAGTGTTAGTAACAGGGATGCTGTTAGAGAACAAATACACTCACTTCTGGAAGATCTGGTGATAAAACACTAA

Protein sequence

>MsG0580025203.01.T01

LTWHKNISLSRANPCFNFHFPSLSFSIQKPTHALSFLTFSSSLSKTLYLLLLSNRFLSLSSKFNHRFTMPKAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDADKAPFNAKADKLKEEYEKTMRAYNMGITEKNASEEEGSEKSKSEVNDDDEDGDDGVGKSTLIMRVFESLKASNPTLKVQGFYTREVRVAGERVGFEVVTLDGRTCPLASSNFSSQESHRWPNVGKYKVDVASFESLALPELQVREDTDLFIIDEVGKMELYSSSFFPAVLKVLESNIPILASIPVPKFGRDIPAVARLRNHAGATLFTLSVSNRDAVREQIHSLLEDLVIKH*