AlfalfaGEDB | MsG0880047059.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047059.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047059.01.T01	AES91885.1	91.757	461	13	7	1	452	1	445	0	624

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047059.01.T01	G7JLJ0	91.757	461	13	7	1	452	1	445	0.0	624

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049140.01	MsG0880047059.01	0.819229	1.295787e-52	9.913497e-50
MsG0180003427.01	MsG0880047059.01	0.803090	4.115341e-49	2.049516e-46
MsG0180004661.01	MsG0880047059.01	0.843172	1.650303e-58	2.560173e-55
MsG0180005002.01	MsG0880047059.01	0.801216	9.995164e-49	4.746764e-46
MsG0180006133.01	MsG0880047059.01	0.810643	1.040937e-50	6.309030e-48
MsG0280006311.01	MsG0880047059.01	0.803846	2.868844e-49	1.456919e-46
MsG0280006540.01	MsG0880047059.01	0.801888	7.279915e-49	3.516625e-46
MsG0280006563.01	MsG0880047059.01	0.803428	3.501855e-49	1.759332e-46
MsG0380015189.01	MsG0880047059.01	0.808096	3.663296e-50	2.075853e-47
MsG0380015350.01	MsG0880047059.01	0.800703	1.272588e-48	5.965216e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047059.01.T01	MTR_4g120050	91.757	461	13	7	1	452	1	445	0.0	624
MsG0880047059.01.T01	MTR_4g120050	91.757	461	13	7	1	452	7	451	0.0	623
MsG0880047059.01.T01	MTR_2g436340	47.182	479	135	20	1	452	1	388	6.41e-86	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047059.01.T01	AT3G06868	40.397	453	173	13	10	451	2	368	3.07e-69	224
MsG0880047059.01.T01	AT5G49100	77.273	44	10	0	15	58	6	49	5.50e-18	85.9

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Find 92 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGTGGTGGAAAGAGT+TGG	0.552394	8:-81442221	MsG0880047059.01.T01:CDS
AAACCGTGGTGGAAAGAGTT+GGG	0.438847	8:-81442220	MsG0880047059.01.T01:CDS
AAACGGCATGAATAGGAAGA+GGG	0.675809	8:+81443234	None:intergenic
AAAGTACCATTATGCCATAG+AGG	0.583109	8:+81441721	None:intergenic
AACCCCAACTCTTTCCACCA+CGG	0.631839	8:+81442217	None:intergenic
AACCGTGGTGGAAAGAGTTG+GGG	0.625855	8:-81442219	MsG0880047059.01.T01:CDS
AAGAAGAGGTAGTAACTCTA+TGG	0.451639	8:-81442880	MsG0880047059.01.T01:CDS
AATGCATTGCATGCCATCAA+TGG	0.463242	8:+81443340	None:intergenic
ACAATGACGAGTAGTGGAAG+TGG	0.547008	8:+81443157	None:intergenic
ACAGTGTTGATGGAAGAAGG+AGG	0.760277	8:+81443134	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAGTGTGCATTACAATA+AGG	+	Chr8:81443232-81443251	None:intergenic	30.0%
AGTAGCATTATTAAAGCTCT+TGG	+	Chr8:81442075-81442094	None:intergenic	30.0%
CTTGCTTCTTGTTAATATTC+AGG	-	Chr8:81443003-81443022	MsG0880047059.01.T01:CDS	30.0%
TGAAGAAGAAGAAGATGAAA+CGG	+	Chr8:81441607-81441626	None:intergenic	30.0%
TTTCTCTTAGCTAAGAGAAA+AGG	+	Chr8:81441850-81441831	None:intergenic	30.0%
AAGAAGAGGTAGTAACTCTA+TGG	-	Chr8:81441941-81441960	MsG0880047059.01.T01:three_prime_UTR	35.0%
AGCCAAAAGTGATTCTATGT+AGG	+	Chr8:81443354-81443373	None:intergenic	35.0%
ATAGAGTTACTACCTCTTCT+TGG	+	Chr8:81441942-81441961	None:intergenic	35.0%
CAACGTGAAGGTAAATCAAA+GGG	-	Chr8:81442344-81442363	MsG0880047059.01.T01:CDS	35.0%
GAAAGAATTTCAACTGGGTT+TGG	-	Chr8:81442293-81442312	MsG0880047059.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	81441429	81443414	81441429	ID=MsG0880047059.01;Name=MsG0880047059.01
Chr8	mRNA	81441429	81443414	81441429	ID=MsG0880047059.01.T01;Parent=MsG0880047059.01;Name=MsG0880047059.01.T01;_AED=0.20;_eAED=0.20;_QI=0\|-1\|1\|1\|-1\|1\|1\|627\|452
Chr8	exon	81441429	81443414	81441429	ID=MsG0880047059.01.T01:exon:10706;Parent=MsG0880047059.01.T01
Chr8	CDS	81442056	81443414	81442056	ID=MsG0880047059.01.T01:cds;Parent=MsG0880047059.01.T01
Chr8	three_prime_UTR	81441429	81442055	81441429	ID=MsG0880047059.01.T01:three_prime_utr;Parent=MsG0880047059.01.T01

Gene Sequence

>MsG0880047059.01.T01

ATGGAAGCTATGAAAGGAGGTGGAAGAGTTAACATTGGTGGTGAAGATGATTCCATTGATGGCATGCAATGCATTGATCATCCTTACAGAAACAACCCTGGTGGGATCTGTGCTTTTTGTCTTCAAGAAAAACTTGGTAAACTTGTTTCTTCTTCTTTCCCTCTTCCTATTCATGCCGTTTCATCTTCTTCTTCTTCACCTTCTTTCAGATCCGATATTGCACCTTCTTCATCTTCCACTTCCACTACTCGTCATTGTCCTCCTTCTTCCATCAACACTGTATCAGCAACAACTGCTGTAACTTCATCTTCTTCTCTTTCACTCTCTGTTTGTCCTACAAAAAATGAAAATCATGGTAAACATTACCACCATGAATACTATTCTAGAAAAACTCGTATTCCTTTTCTCTTAGCTAAGAGAAAGAAAAAGAAAACCTCTGTTTCAGCATCTGTTTCTGGTTCTGCTACGTCGTCTAATATCATTCTGAAACGTAGCAAATCAACTGCAACACCAAGAAGAGGTAGTAACTCTATGGTTGATGCAGATGATGAATATTTTAGTCCAAGAAAAAGAAATGGGTTTTGGTCTTTTCTCTATCATTCTTCAAAATCTTCAACTTCTTCTTCTTCCAAGAGTTTGAATTCCAAGAGCTTTAATAATGCTACTGCTTCAGCAAAGCTTAAGGAAAAGTGTTGTTCAGGTTCTTCTCTAGGAAGAAAGAACGACATTGTTATTGTTGAAGAAGAAGATAACAGTCCTAATAGCAGCAGCAACAACAACAACAACACAGGTTCTTTTGAACGTAAAGTTTCAAGATCTAGATCTGTTGGATGTGGTAGCAGAAGCTTCTCTGGTGATTTCTTTGAAAGAATTTCAACTGGGTTTGGAGATTGTACTCTAAGAAGAGTTGAATCTCAACGTGAAGGTAAATCAAAGGGAGTAGTTGCTAGTTCTAACGGTATTGCTTCTGTTAACCGTGCTCAAGACCACCACCACCACCACCATTGCATGAAAGAGAGAGTACTTAGAAGATGTGGAGGAATATTCAGTGGCTTCATGATGACATCATCTTCATCTTCAAATTCATCAACTTCATCTTATTGGGTTTCTTCTAATTCTGCTGATGATGCTGTGAATGGAGGAGGAAAACAAGGTTCTGTAACAGTTTCTCAAAACCGTGGTGGAAAGAGTTGGGGTTGGGCTTTTGCTAGTCCTATGAGAGCTTTTAGTAGCAAAGGATCTTCTAAAGAGAATCATCAGAATAATAGAAGAGATATTATTAGAGATGCTAATGATAATAATAAGAATGCTACACCAAATTTATCTGCTATGCCATCTTTGCTTTCTGCTAGAGGATGA

Protein sequence

>MsG0880047059.01.T01

MEAMKGGGRVNIGGEDDSIDGMQCIDHPYRNNPGGICAFCLQEKLGKLVSSSFPLPIHAVSSSSSSPSFRSDIAPSSSSTSTTRHCPPSSINTVSATTAVTSSSSLSLSVCPTKNENHGKHYHHEYYSRKTRIPFLLAKRKKKKTSVSASVSGSATSSNIILKRSKSTATPRRGSNSMVDADDEYFSPRKRNGFWSFLYHSSKSSTSSSSKSLNSKSFNNATASAKLKEKCCSGSSLGRKNDIVIVEEEDNSPNSSSNNNNNTGSFERKVSRSRSVGCGSRSFSGDFFERISTGFGDCTLRRVESQREGKSKGVVASSNGIASVNRAQDHHHHHHCMKERVLRRCGGIFSGFMMTSSSSSNSSTSSYWVSSNSADDAVNGGGKQGSVTVSQNRGGKSWGWAFASPMRAFSSKGSSKENHQNNRRDIIRDANDNNKNATPNLSAMPSLLSARG*