AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004737.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004737.01.T01 MTR_1g085550 82.906 234 35 2 6 236 43 274 1.03e-133 377
MsG0180004737.01.T01 MTR_8g094800 35.484 155 87 5 65 218 107 249 3.32e-14 72.0
MsG0180004737.01.T01 MTR_8g094800 35.484 155 87 5 65 218 107 249 3.89e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004737.01.T01 AT4G01650 55.612 196 78 3 43 231 16 209 4.27e-70 214
MsG0180004737.01.T01 AT4G01650 54.271 199 76 4 43 231 93 286 1.22e-68 213
MsG0180004737.01.T01 AT4G01650 62.185 119 41 2 43 159 93 209 3.26e-46 153
MsG0180004737.01.T01 AT5G08720 36.025 161 90 5 65 224 97 245 8.83e-17 79.3

Find 49 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.163287 1:+81961694 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 1:+81964339 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 1:+81964597 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 1:-81964592 MsG0180004737.01.T01:CDS
TGATGATTCTGGGACTTTAT+TGG 0.289143 1:-81964581 MsG0180004737.01.T01:CDS
TTCAGCTCTTCGAAGGAAAA+TGG 0.305062 1:-81962551 MsG0180004737.01.T01:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 1:-81964394 MsG0180004737.01.T01:CDS
CTCAGTAAATTGATCCAAAA+AGG 0.327199 1:-81964364 MsG0180004737.01.T01:CDS
GGAGAGCAGAACTTGGCATT+TGG 0.347544 1:-81962680 MsG0180004737.01.T01:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 1:-81964438 MsG0180004737.01.T01:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 1:-81962679 MsG0180004737.01.T01:CDS
CGAAGATGTGGTTGCCCGTT+CGG 0.371633 1:-81961755 MsG0180004737.01.T01:CDS
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 1:+81964604 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 1:+81964605 None:intergenic
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 1:-81964532 MsG0180004737.01.T01:CDS
TTTCTGAGCTTCACCCCTTA+CGG 0.425093 1:+81961686 None:intergenic
CTACCCTCTATCAGCCGAAC+GGG 0.437593 1:+81961741 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 1:-81962659 MsG0180004737.01.T01:CDS
ATCAGTCAAGATATTCCAAA+TGG 0.452946 1:+81964423 None:intergenic
CGAACGGGCAACCACATCTT+CGG 0.459917 1:+81961756 None:intergenic
GTCGTGTTAATTTCTCGAAC+CGG 0.460132 1:+81961804 None:intergenic
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 1:+81964340 None:intergenic
GTTGCCCGTTCGGCTGATAG+AGG 0.471438 1:-81961745 MsG0180004737.01.T01:CDS
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 1:-81964531 MsG0180004737.01.T01:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 1:-81962578 MsG0180004737.01.T01:CDS
CTTGACTGATTATGAAAGGT+TGG 0.487454 1:-81964410 MsG0180004737.01.T01:CDS
ACGACACCGATGATGATTCT+GGG 0.503280 1:-81964591 MsG0180004737.01.T01:CDS
AAAAGAACCTTAAATCCGTA+AGG 0.508599 1:-81961701 MsG0180004737.01.T01:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 1:-81964542 MsG0180004737.01.T01:CDS
GAATTGGAGACTCTTCCATC+TGG 0.520472 1:-81962614 MsG0180004737.01.T01:CDS
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 1:-81961823 MsG0180004737.01.T01:CDS
TTAAGGTGGTTGGGTTGTGT+TGG 0.535370 1:+81964614 None:intergenic
ACAGATTGGAGAGCAGAACT+TGG 0.540322 1:-81962687 MsG0180004737.01.T01:intron
AAAGAACCTTAAATCCGTAA+GGG 0.553093 1:-81961700 MsG0180004737.01.T01:CDS
TAGACTTCAAGATGATTGAA+GGG 0.566474 1:-81962577 MsG0180004737.01.T01:CDS
ATTCACGCAGAATTGAGTCT+AGG 0.570895 1:-81964471 MsG0180004737.01.T01:CDS
TTGGAAGCGCGATACAAAGA+AGG 0.571624 1:+81964633 None:intergenic
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 1:-81964530 MsG0180004737.01.T01:CDS
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 1:+81964600 None:intergenic
TTGCCCGTTCGGCTGATAGA+GGG 0.591142 1:-81961744 MsG0180004737.01.T01:CDS
ATGTCACGCTTCATACCAGA+TGG 0.591702 1:+81962599 None:intergenic
ATATCTTGACTGATTATGAA+AGG 0.602548 1:-81964414 MsG0180004737.01.T01:CDS
TGGGACTTTATTGGTGACAG+AGG 0.604754 1:-81964572 MsG0180004737.01.T01:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 1:+81964376 None:intergenic
AAGAACCTTAAATCCGTAAG+GGG 0.627039 1:-81961699 MsG0180004737.01.T01:CDS
TCTACCCTCTATCAGCCGAA+CGG 0.635039 1:+81961740 None:intergenic
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 1:-81961832 MsG0180004737.01.T01:intron
TAAAGTCCCAGAATCATCAT+CGG 0.654239 1:+81964585 None:intergenic
TTGATGTTAAGCCGAAGATG+TGG 0.693995 1:-81961767 MsG0180004737.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAAGAAAAAAAAAAAT+AGG - Chr1:81962980-81962999 MsG0180004737.01.T01:intron 10.0%
!!! ACTATTCATTTTTTATTAAT+CGG - Chr1:81962122-81962141 MsG0180004737.01.T01:intron 10.0%
!! AATACACATAATCTTTAATA+CGG + Chr1:81962309-81962328 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG - Chr1:81964161-81964180 MsG0180004737.01.T01:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG + Chr1:81963970-81963989 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG - Chr1:81964088-81964107 MsG0180004737.01.T01:intron 15.0%
!! TTGTTTATATTGCAAATTTA+GGG + Chr1:81962739-81962758 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG + Chr1:81962740-81962759 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG - Chr1:81962465-81962484 MsG0180004737.01.T01:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG - Chr1:81962852-81962871 MsG0180004737.01.T01:intron 15.0%
!!! ATTTTCTTGAAAAGTAAATT+TGG - Chr1:81963561-81963580 MsG0180004737.01.T01:intron 15.0%
!!! CTATTCATTTTTTATTAATC+GGG - Chr1:81962123-81962142 MsG0180004737.01.T01:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG + Chr1:81964155-81964174 None:intergenic 15.0%
!! AATTGCACATATTGAAAATT+GGG + Chr1:81964339-81964358 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG + Chr1:81962302-81962321 None:intergenic 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG - Chr1:81962490-81962509 MsG0180004737.01.T01:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG - Chr1:81963366-81963385 MsG0180004737.01.T01:intron 20.0%
!! GTATTAAAGATTATGTGTAT+TGG - Chr1:81962308-81962327 MsG0180004737.01.T01:intron 20.0%
!! TAATCTTTAATACGGATAAT+GGG + Chr1:81962301-81962320 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG + Chr1:81964015-81964034 None:intergenic 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG - Chr1:81962586-81962605 MsG0180004737.01.T01:CDS 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG + Chr1:81963955-81963974 None:intergenic 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG - Chr1:81962681-81962700 MsG0180004737.01.T01:CDS 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG - Chr1:81964128-81964147 MsG0180004737.01.T01:intron 20.0%
!!! AGGATATGATTTTGAATATT+AGG - Chr1:81963345-81963364 MsG0180004737.01.T01:intron 20.0%
!!! TAGGAATTACTCTAATTTTT+TGG + Chr1:81962258-81962277 None:intergenic 20.0%
! AAAAACAGGAGTTGAAAATT+AGG - Chr1:81964102-81964121 MsG0180004737.01.T01:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG + Chr1:81962277-81962296 None:intergenic 25.0%
! AGATATAAAAGTAGTAGGAA+GGG - Chr1:81962495-81962514 MsG0180004737.01.T01:intron 25.0%
! ATATCTTGACTGATTATGAA+AGG - Chr1:81961891-81961910 MsG0180004737.01.T01:intron 25.0%
! ATATTGTATTAGTGTTGTGT+TGG - Chr1:81962089-81962108 MsG0180004737.01.T01:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG + Chr1:81964338-81964357 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG + Chr1:81964340-81964359 None:intergenic 25.0%
! TAACTATACCTTTAAACTGT+GGG - Chr1:81963215-81963234 MsG0180004737.01.T01:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG + Chr1:81963456-81963475 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG - Chr1:81962494-81962513 MsG0180004737.01.T01:intron 25.0%
! TATGATTTCCATATATGTCA+TGG - Chr1:81963150-81963169 MsG0180004737.01.T01:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG - Chr1:81962090-81962109 MsG0180004737.01.T01:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG + Chr1:81963068-81963087 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG + Chr1:81963482-81963501 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG - Chr1:81963480-81963499 MsG0180004737.01.T01:intron 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG - Chr1:81962795-81962814 MsG0180004737.01.T01:intron 25.0%
!! TTAGAACTATACAGTTTGTT+TGG + Chr1:81962583-81962602 None:intergenic 25.0%
!! TTTTTGGATCAATTTACTGA+GGG + Chr1:81961942-81961961 None:intergenic 25.0%
!!! AACAAAAGTCTTATTGATTG+AGG - Chr1:81962754-81962773 MsG0180004737.01.T01:intron 25.0%
!!! ACAAAAGTCTTATTGATTGA+GGG - Chr1:81962755-81962774 MsG0180004737.01.T01:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG - Chr1:81963675-81963694 MsG0180004737.01.T01:intron 25.0%
!!! ATTACATTTTGAAACCATGT+AGG - Chr1:81964385-81964404 MsG0180004737.01.T01:CDS 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG - Chr1:81962585-81962604 MsG0180004737.01.T01:CDS 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG - Chr1:81962126-81962145 MsG0180004737.01.T01:intron 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG - Chr1:81963907-81963926 MsG0180004737.01.T01:intron 25.0%
AAAAGAACCTTAAATCCGTA+AGG - Chr1:81964604-81964623 MsG0180004737.01.T01:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG - Chr1:81964605-81964624 MsG0180004737.01.T01:CDS 30.0%
AATATCAACATTGTTGAGCT+AGG + Chr1:81962177-81962196 None:intergenic 30.0%
ATAGACTTCAAGATGATTGA+AGG - Chr1:81963727-81963746 MsG0180004737.01.T01:intron 30.0%
ATAGGTCAACATGATTATGT+TGG - Chr1:81962998-81963017 MsG0180004737.01.T01:intron 30.0%
ATATCAACATTGTTGAGCTA+GGG + Chr1:81962176-81962195 None:intergenic 30.0%
ATCAGTCAAGATATTCCAAA+TGG + Chr1:81961885-81961904 None:intergenic 30.0%
ATGATTATATGCCATGAAGT+AGG + Chr1:81963104-81963123 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG + Chr1:81963161-81963180 None:intergenic 30.0%
CCAGAAGAATTCTAATAAGA+GGG + Chr1:81963809-81963828 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG - Chr1:81961941-81961960 MsG0180004737.01.T01:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG - Chr1:81962496-81962515 MsG0180004737.01.T01:intron 30.0%
GGGTTAAAATTTGATGCTAA+AGG - Chr1:81963646-81963665 MsG0180004737.01.T01:intron 30.0%
GTAACTATACCTTTAAACTG+TGG - Chr1:81963214-81963233 MsG0180004737.01.T01:intron 30.0%
GTTCCATTATCTTAACAGAT+TGG - Chr1:81963604-81963623 MsG0180004737.01.T01:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG + Chr1:81963471-81963490 None:intergenic 30.0%
TAGACTTCAAGATGATTGAA+GGG - Chr1:81963728-81963747 MsG0180004737.01.T01:intron 30.0%
TAGAGTAATTCCTACTTTCT+AGG - Chr1:81962264-81962283 MsG0180004737.01.T01:intron 30.0%
TCAAACCAAATTTACGAACA+GGG + Chr1:81963538-81963557 None:intergenic 30.0%
TCCAGAAGAATTCTAATAAG+AGG + Chr1:81963810-81963829 None:intergenic 30.0%
TCTCCAATCTGTTAAGATAA+TGG + Chr1:81963610-81963629 None:intergenic 30.0%
TGCTTTAACAGTAACACTTT+AGG + Chr1:81963038-81963057 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG + Chr1:81963539-81963558 None:intergenic 30.0%
TTCTTATCTACTCTAGTATG+AGG + Chr1:81962967-81962986 None:intergenic 30.0%
TTGACATAAAATGACCTTGT+TGG + Chr1:81962537-81962556 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG - Chr1:81963039-81963058 MsG0180004737.01.T01:intron 30.0%
! CTTTTTGGATCAATTTACTG+AGG + Chr1:81961943-81961962 None:intergenic 30.0%
! TATATTGCAAATTTAGGGCA+AGG + Chr1:81962734-81962753 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG - Chr1:81963530-81963549 MsG0180004737.01.T01:intron 30.0%
!! CAAAAGTCTTATTGATTGAG+GGG - Chr1:81962756-81962775 MsG0180004737.01.T01:intron 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG - Chr1:81963888-81963907 MsG0180004737.01.T01:intron 30.0%
!! TTTGGTTTGCTTCTTTGTAA+TGG - Chr1:81962699-81962718 MsG0180004737.01.T01:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG - Chr1:81964200-81964219 MsG0180004737.01.T01:intron 30.0%
!!! TCATTTTTTATTAATCGGGC+GGG - Chr1:81962127-81962146 MsG0180004737.01.T01:intron 30.0%
AAATGGAGTGCATCTTATCT+TGG - Chr1:81964217-81964236 MsG0180004737.01.T01:intron 35.0%
AAGAACCTTAAATCCGTAAG+GGG - Chr1:81964606-81964625 MsG0180004737.01.T01:CDS 35.0%
ACATAAAATGACCTTGTTGG+TGG + Chr1:81962534-81962553 None:intergenic 35.0%
AGTTATGTATGCATCAATCG+TGG - Chr1:81963174-81963193 MsG0180004737.01.T01:intron 35.0%
ATCATAATCACAATCCCACT+TGG + Chr1:81964270-81964289 None:intergenic 35.0%
ATGTTAGATGCAGCTGTATT+AGG + Chr1:81962617-81962636 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG + Chr1:81964334-81964353 None:intergenic 35.0%
CCCTCTTATTAGAATTCTTC+TGG - Chr1:81963806-81963825 MsG0180004737.01.T01:intron 35.0%
CTTGACTGATTATGAAAGGT+TGG - Chr1:81961895-81961914 MsG0180004737.01.T01:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG - Chr1:81961982-81962001 MsG0180004737.01.T01:intron 35.0%
GTTATGTATGCATCAATCGT+GGG - Chr1:81963175-81963194 MsG0180004737.01.T01:intron 35.0%
GTTTAGTTGCATGCTTGATT+TGG - Chr1:81962375-81962394 MsG0180004737.01.T01:intron 35.0%
TAAAGTCCCAGAATCATCAT+CGG + Chr1:81961723-81961742 None:intergenic 35.0%
TAAGTTAGACACATTCACTC+AGG - Chr1:81962199-81962218 MsG0180004737.01.T01:intron 35.0%
TATGTGTATTGGACACAACA+CGG - Chr1:81962319-81962338 MsG0180004737.01.T01:intron 35.0%
TCTTGCAGGTATAATGCAAT+TGG - Chr1:81961981-81962000 MsG0180004737.01.T01:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG + Chr1:81964144-81964163 None:intergenic 35.0%
TTATCTACTCTAGTATGAGG+TGG + Chr1:81962964-81962983 None:intergenic 35.0%
TTGCAGGTATAATGCAATTG+GGG - Chr1:81961983-81962002 MsG0180004737.01.T01:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG - Chr1:81963771-81963790 MsG0180004737.01.T01:intron 35.0%
! AAATTTAGGGCAAGGTCATA+AGG + Chr1:81962726-81962745 None:intergenic 35.0%
! ACTTGTTGAATACTCCTACA+TGG + Chr1:81964402-81964421 None:intergenic 35.0%
! AGCATTTAAAACCAGTCCAA+CGG + Chr1:81962883-81962902 None:intergenic 35.0%
! AGGAAAATGGTCTATTTTGC+AGG - Chr1:81963767-81963786 MsG0180004737.01.T01:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG + Chr1:81963834-81963853 None:intergenic 35.0%
! ATTCAGGTTATTGACCAAGT+GGG - Chr1:81964253-81964272 MsG0180004737.01.T01:intron 35.0%
! ATTTTCACCATTTCCTATGC+TGG - Chr1:81964025-81964044 MsG0180004737.01.T01:intron 35.0%
! TAGAGAAGTGCATAAAACTC+TGG + Chr1:81963865-81963884 None:intergenic 35.0%
! TATTCAGGTTATTGACCAAG+TGG - Chr1:81964252-81964271 MsG0180004737.01.T01:intron 35.0%
!! TGATGATTCTGGGACTTTAT+TGG - Chr1:81961724-81961743 MsG0180004737.01.T01:CDS 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG + Chr1:81962242-81962261 None:intergenic 35.0%
!!! GATTCTAGCTAGCGTTTTTT+TGG - Chr1:81964183-81964202 MsG0180004737.01.T01:intron 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG - Chr1:81963325-81963344 MsG0180004737.01.T01:intron 35.0%
ACCAACTGATGTGTATTGCT+TGG + Chr1:81963267-81963286 None:intergenic 40.0%
ACGCTTCACTTGATTCCATT+TGG - Chr1:81961867-81961886 MsG0180004737.01.T01:intron 40.0%
AGATGCACTCCATTTGTAGT+TGG + Chr1:81964212-81964231 None:intergenic 40.0%
AGTTGAAGATTCAGAGTCGT+TGG - Chr1:81961763-81961782 MsG0180004737.01.T01:CDS 40.0%
ATTCACGCAGAATTGAGTCT+AGG - Chr1:81961834-81961853 MsG0180004737.01.T01:intron 40.0%
CATCATAGCATAGCCAAGTA+TGG - Chr1:81963397-81963416 MsG0180004737.01.T01:intron 40.0%
CTGCAAAACCATCATTGTCT+AGG + Chr1:81964451-81964470 None:intergenic 40.0%
GCTAACATCCTAGACAATGA+TGG - Chr1:81964440-81964459 MsG0180004737.01.T01:CDS 40.0%
GTCGTGTTAATTTCTCGAAC+CGG + Chr1:81964504-81964523 None:intergenic 40.0%
TAGATGCAGCTGTATTAGGA+AGG + Chr1:81962613-81962632 None:intergenic 40.0%
TCAGTACTCCCACAGTTTAA+AGG + Chr1:81963226-81963245 None:intergenic 40.0%
TCCAAGCAATACACATCAGT+TGG - Chr1:81963263-81963282 MsG0180004737.01.T01:intron 40.0%
TGCAAGAGTCGAGCAAAATT+GGG + Chr1:81961968-81961987 None:intergenic 40.0%
TGCAGGTATAATGCAATTGG+GGG - Chr1:81961984-81962003 MsG0180004737.01.T01:intron 40.0%
TGGAAAGTCTGCGATTATTC+AGG - Chr1:81964237-81964256 MsG0180004737.01.T01:intron 40.0%
TTCAGCTCTTCGAAGGAAAA+TGG - Chr1:81963754-81963773 MsG0180004737.01.T01:intron 40.0%
TTGATGTTAAGCCGAAGATG+TGG - Chr1:81964538-81964557 MsG0180004737.01.T01:CDS 40.0%
! ATGTGAAGCATCCTACTTCA+TGG - Chr1:81963090-81963109 MsG0180004737.01.T01:intron 40.0%
! CCTTTAGAAATTCAATGGCG+CGG - Chr1:81963485-81963504 MsG0180004737.01.T01:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG + Chr1:81961958-81961977 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG + Chr1:81961711-81961730 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG - Chr1:81962384-81962403 MsG0180004737.01.T01:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG + Chr1:81962562-81962581 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG + Chr1:81962563-81962582 None:intergenic 40.0%
AACGACACCGATGATGATTC+TGG - Chr1:81961713-81961732 MsG0180004737.01.T01:CDS 45.0%
AATTTACTGAGGGCAAGACC+AGG + Chr1:81961932-81961951 None:intergenic 45.0%
ACAGATTGGAGAGCAGAACT+TGG - Chr1:81963618-81963637 MsG0180004737.01.T01:intron 45.0%
ACGACACCGATGATGATTCT+GGG - Chr1:81961714-81961733 MsG0180004737.01.T01:CDS 45.0%
ACTCTAGTATGAGGTGGTTG+TGG + Chr1:81962958-81962977 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG - Chr1:81962864-81962883 MsG0180004737.01.T01:intron 45.0%
ATGTATGCATCAATCGTGGG+TGG - Chr1:81963178-81963197 MsG0180004737.01.T01:intron 45.0%
ATGTCACGCTTCATACCAGA+TGG + Chr1:81963709-81963728 None:intergenic 45.0%
CCGCGCCATTGAATTTCTAA+AGG + Chr1:81963488-81963507 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG + Chr1:81963413-81963432 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG + Chr1:81961969-81961988 None:intergenic 45.0%
CTTCACCCCTTACGGATTTA+AGG + Chr1:81964614-81964633 None:intergenic 45.0%
GAATTGGAGACTCTTCCATC+TGG - Chr1:81963691-81963710 MsG0180004737.01.T01:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG - Chr1:81963626-81963645 MsG0180004737.01.T01:intron 45.0%
TAAACGAAGTGGCAAGCACA+AGG + Chr1:81962231-81962250 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG - Chr1:81962345-81962364 MsG0180004737.01.T01:intron 45.0%
TCCAAGACCAGCATAGGAAA+TGG + Chr1:81964035-81964054 None:intergenic 45.0%
TTTCAGCGATGGAAGTTGTG+AGG - Chr1:81964473-81964492 MsG0180004737.01.T01:CDS 45.0%
TTTCTGAGCTTCACCCCTTA+CGG + Chr1:81964622-81964641 None:intergenic 45.0%
! AATGACCTTGTTGGTGGATG+AGG + Chr1:81962528-81962547 None:intergenic 45.0%
! ACCATTTCCTATGCTGGTCT+TGG - Chr1:81964031-81964050 MsG0180004737.01.T01:intron 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG - Chr1:81961775-81961794 MsG0180004737.01.T01:CDS 45.0%
! AGGGATTTTCAGCTCTTCGA+AGG - Chr1:81963747-81963766 MsG0180004737.01.T01:intron 45.0%
! AGGTTGGCTGATTTCATTCC+TGG - Chr1:81961911-81961930 MsG0180004737.01.T01:intron 45.0%
! CAATTTTGCTCGACTCTTGC+AGG - Chr1:81961967-81961986 MsG0180004737.01.T01:intron 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG - Chr1:81961774-81961793 MsG0180004737.01.T01:CDS 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG + Chr1:81964041-81964060 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG - Chr1:81964462-81964481 MsG0180004737.01.T01:CDS 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG - Chr1:81961773-81961792 MsG0180004737.01.T01:CDS 45.0%
! TGGGACTTTATTGGTGACAG+AGG - Chr1:81961733-81961752 MsG0180004737.01.T01:CDS 45.0%
! TTAAGGTGGTTGGGTTGTGT+TGG + Chr1:81961694-81961713 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG + Chr1:81961675-81961694 None:intergenic 45.0%
!! AACTGTGGGAGTACTGATCT+TGG - Chr1:81963229-81963248 MsG0180004737.01.T01:intron 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG + Chr1:81961708-81961727 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG - Chr1:81963410-81963429 MsG0180004737.01.T01:intron 45.0%
AAAGCATAGGCGTCCATGAG+TGG - Chr1:81963052-81963071 MsG0180004737.01.T01:intron 50.0%
AGTGGTTGTGGGCGTCTATT+AGG + Chr1:81962925-81962944 None:intergenic 50.0%
CTAGTATGAGGTGGTTGTGG+TGG + Chr1:81962955-81962974 None:intergenic 50.0%
GGAGAGCAGAACTTGGCATT+TGG - Chr1:81963625-81963644 MsG0180004737.01.T01:intron 50.0%
GGCGTCTATTAGGGTAATGC+AGG + Chr1:81962915-81962934 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG + Chr1:81962924-81962943 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG - Chr1:81962924-81962943 MsG0180004737.01.T01:intron 50.0%
TATGCATCAATCGTGGGTGG+TGG - Chr1:81963181-81963200 MsG0180004737.01.T01:intron 50.0%
TCTACCCTCTATCAGCCGAA+CGG + Chr1:81964568-81964587 None:intergenic 50.0%
TGGAAGTTGTGAGGACTCTC+CGG - Chr1:81964482-81964501 MsG0180004737.01.T01:CDS 50.0%
TTCCTCCTCATCCACCAACA+AGG - Chr1:81962520-81962539 MsG0180004737.01.T01:intron 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG + Chr1:81961703-81961722 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG + Chr1:81961704-81961723 None:intergenic 50.0%
ATACGGTCAGTCCGTTGGAC+TGG - Chr1:81962869-81962888 MsG0180004737.01.T01:intron 55.0%
CGAACGGGCAACCACATCTT+CGG + Chr1:81964552-81964571 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+CGG - Chr1:81964550-81964569 MsG0180004737.01.T01:CDS 55.0%
CTACCCTCTATCAGCCGAAC+GGG + Chr1:81964567-81964586 None:intergenic 55.0%
TTGCCCGTTCGGCTGATAGA+GGG - Chr1:81964561-81964580 MsG0180004737.01.T01:CDS 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG + Chr1:81963846-81963865 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG + Chr1:81962525-81962544 None:intergenic 55.0%
GACACAACACGGCTCTCACG+AGG - Chr1:81962330-81962349 MsG0180004737.01.T01:intron 60.0%
GTGGCTACGCCAGTGGTTGT+GGG + Chr1:81962936-81962955 None:intergenic 60.0%
GTTGCCCGTTCGGCTGATAG+AGG - Chr1:81964560-81964579 MsG0180004737.01.T01:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG + Chr1:81962937-81962956 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG + Chr1:81962943-81962962 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81961647 81964680 81961647 ID=MsG0180004737.01;Name=MsG0180004737.01
Chr1 mRNA 81961647 81964680 81961647 ID=MsG0180004737.01.T01;Parent=MsG0180004737.01;Name=MsG0180004737.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|1|1|3|0|236
Chr1 exon 81964339 81964680 81964339 ID=MsG0180004737.01.T01:exon:34775;Parent=MsG0180004737.01.T01
Chr1 exon 81962539 81962705 81962539 ID=MsG0180004737.01.T01:exon:34774;Parent=MsG0180004737.01.T01
Chr1 exon 81961647 81961848 81961647 ID=MsG0180004737.01.T01:exon:34773;Parent=MsG0180004737.01.T01
Chr1 CDS 81964339 81964680 81964339 ID=MsG0180004737.01.T01:cds;Parent=MsG0180004737.01.T01
Chr1 CDS 81962539 81962705 81962539 ID=MsG0180004737.01.T01:cds;Parent=MsG0180004737.01.T01
Chr1 CDS 81961647 81961848 81961647 ID=MsG0180004737.01.T01:cds;Parent=MsG0180004737.01.T01
Gene Sequence

>MsG0180004737.01.T01

ATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGACTTTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGATTTTCAGCTCTTCGAAGGAAAATGGTCTATTTTGCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGAGAAATTAACACGACTCTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTCGGCTGATAGAGGGTAGACTTTGCAATGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCAGAAAGCTACTGACAGAACTGTGAATGCAAATCAATTTGAATGA

Protein sequence

>MsG0180004737.01.T01

MFVKHQLYSFFVSRFQHNPTTLNDTDDDSGTLLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGIFSSSKENGLFCSDGSCEDSPVREINTTLSYIVDVKPKMWLPVRLIEGRLCNEIKKNLKSVRGEAQKATDRTVNANQFE*