AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006063.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006063.01.T01 MTR_1g112860 99.320 147 1 0 1 147 120 266 2.85e-101 292
MsG0180006063.01.T01 MTR_1g112860 99.315 146 1 0 2 147 110 255 1.63e-100 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006063.01.T01 AT2G20920 67.785 149 42 2 1 147 122 266 1.55e-63 196

Find 114 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGAAATTGTCCCATTT+TGG 0.154407 1:-99587457 MsG0180006063.01.T01:three_prime_UTR
CATAATCATCTCTCAGTTCT+TGG 0.239865 1:-99587644 MsG0180006063.01.T01:exon
AGGGAATCCTATGCCCAAAA+TGG 0.242186 1:+99587443 None:intergenic
CTCGTAGCCGGTGCTGTTGT+AGG 0.250905 1:-99587747 MsG0180006063.01.T01:CDS
GTAGATATTGTCCCATTTCT+AGG 0.260172 1:-99587699 MsG0180006063.01.T01:CDS
GTTAGTGAAATCATAATTCT+TGG 0.264371 1:-99587411 MsG0180006063.01.T01:three_prime_UTR
ATGAAATGTAGTTGTTTATC+TGG 0.268008 1:-99587219 MsG0180006063.01.T01:three_prime_UTR
TTATGCTGGGGCTGATGTTC+CGG 0.280484 1:-99589042 MsG0180006063.01.T01:CDS
CTTATCTTGGCTGGTAGCTT+TGG 0.288436 1:-99589017 MsG0180006063.01.T01:CDS
CGAAGAAGAGCCACTAAAAT+AGG 0.315687 1:+99589076 None:intergenic
ACAGTGAAGGCTACTGTTAT+AGG 0.321766 1:-99587525 MsG0180006063.01.T01:three_prime_UTR
AGAAATGTGAGGCTTGAAAT+TGG 0.324760 1:+99589948 None:intergenic
GGTCTACAAGCTGGAGTATA+TGG 0.336678 1:-99589116 MsG0180006063.01.T01:CDS
TGATGTTCCGGGACTTATCT+TGG 0.337818 1:-99589030 MsG0180006063.01.T01:CDS
CTGCGAACCGGTGGTGGTCT+TGG 0.339944 1:+99589851 None:intergenic
GAGGAGCGTGGGACCGGTTC+AGG 0.342637 1:-99589765 MsG0180006063.01.T01:five_prime_UTR
CAGTGAAGGCTACTGTTATA+GGG 0.344613 1:-99587524 MsG0180006063.01.T01:three_prime_UTR
TGAAACTGGTGCTTTCTTCA+TGG 0.383086 1:+99589166 None:intergenic
ATTTCACTAACAAGATCAAC+AGG 0.390058 1:+99587423 None:intergenic
TATGCTGGGGCTGATGTTCC+GGG 0.398811 1:-99589041 MsG0180006063.01.T01:CDS
TGCGAACCGGTGGTGGTCTT+GGG 0.401013 1:+99589852 None:intergenic
AGGGAGCGTATCCCTAGAAA+TGG 0.402295 1:+99587687 None:intergenic
TAACCTGAGAAATAGTTTCT+TGG 0.402696 1:+99589605 None:intergenic
AACCGTGGCCGCTACGTAGA+AGG 0.413617 1:-99589805 MsG0180006063.01.T01:five_prime_UTR
TCTCTTTACTTAATCTAGAC+AGG 0.417041 1:-99587386 MsG0180006063.01.T01:three_prime_UTR
TCACCTTCCACCAGTGATCT+TGG 0.418919 1:-99589137 MsG0180006063.01.T01:CDS
AAGGCTGTTGTTATAACAAT+AGG 0.421906 1:-99587774 MsG0180006063.01.T01:CDS
TCTACAGCTGATGCGGCCAC+AGG 0.426313 1:+99587490 None:intergenic
GCGCGCGAACTCGCCTGAAC+CGG 0.436685 1:+99589752 None:intergenic
TAGGGTCAGTTGTAGAGAAC+TGG 0.448419 1:-99587728 MsG0180006063.01.T01:CDS
ACATTTCTTCAACACACAAA+TGG 0.450514 1:-99589933 MsG0180006063.01.T01:five_prime_UTR
AGTTGTAGAGAACTGGTTGC+AGG 0.463677 1:-99587721 MsG0180006063.01.T01:CDS
TCTACGTAGCGGCCACGGTT+CGG 0.469629 1:+99589808 None:intergenic
TGACCAAGAAACTATTTCTC+AGG 0.473361 1:-99589608 MsG0180006063.01.T01:intron
CTAAGGTAGACAGGAAAACT+TGG 0.474546 1:-99587610 MsG0180006063.01.T01:three_prime_UTR
GAAAACGCACTGAAGCTGTT+AGG 0.474719 1:-99589698 MsG0180006063.01.T01:five_prime_UTR
GTTCCGGGACTTATCTTGGC+TGG 0.475158 1:-99589026 MsG0180006063.01.T01:CDS
GGGAATCCTATGCCCAAAAT+GGG 0.483273 1:+99587444 None:intergenic
TCGTAGCCGGTGCTGTTGTA+GGG 0.487487 1:-99587746 MsG0180006063.01.T01:CDS
ATCTTTCCCAAGACCACCAC+CGG 0.487703 1:-99589858 MsG0180006063.01.T01:five_prime_UTR
GTCAACGAGGAGCGTGGGAC+CGG 0.488203 1:-99589771 MsG0180006063.01.T01:five_prime_UTR
AGGTTAACTCAGCGGCGAGC+AGG 0.492386 1:-99589278 MsG0180006063.01.T01:CDS
CCGCATCAGCTGTAGAGAAC+TGG 0.492954 1:-99587483 MsG0180006063.01.T01:three_prime_UTR
TACTGTTATAGGGGTATAGC+TGG 0.493977 1:-99587514 MsG0180006063.01.T01:three_prime_UTR
AAGATGAACCGGCAGAGATA+CGG 0.494662 1:+99589876 None:intergenic
ACTTCGCTAACAACAGCAGC+AGG 0.498483 1:+99587667 None:intergenic
GAAGGTGACTCAATTGAAAC+TGG 0.499493 1:+99589152 None:intergenic
GAGATACGGTCGGACCGGAC+GGG 0.499884 1:+99589890 None:intergenic
GAGGCATTGAACTATTAGCC+TGG 0.508666 1:+99589204 None:intergenic
CATTTGCATGATCATGTCCA+AGG 0.516855 1:-99587552 MsG0180006063.01.T01:three_prime_UTR
CTAATAGTTCAATGCCTCAA+TGG 0.518261 1:-99589199 MsG0180006063.01.T01:CDS
TGTAAAACGTGTTCAGTCCC+AGG 0.519566 1:-99589222 MsG0180006063.01.T01:CDS
TAGATATTGTCCCATTTCTA+GGG 0.520925 1:-99587698 MsG0180006063.01.T01:CDS
CTCAGCACCGTTCGAGATGT+CGG 0.522136 1:-99589723 MsG0180006063.01.T01:five_prime_UTR
TCTTGGTTTCGCTATACCTA+AGG 0.523449 1:-99587627 MsG0180006063.01.T01:three_prime_UTR
CCTTGTATCAAAAGCAAACA+TGG 0.523516 1:-99587351 MsG0180006063.01.T01:three_prime_UTR
TGGTCTTGGGAAAGATGAAC+CGG 0.528342 1:+99589865 None:intergenic
TCGCTATACCTAAGGTAGAC+AGG 0.529570 1:-99587619 MsG0180006063.01.T01:three_prime_UTR
CGGTCCGACCGTATCTCTGC+CGG 0.529633 1:-99589884 MsG0180006063.01.T01:five_prime_UTR
TCAGCCCCAGCATAACCTGC+AGG 0.529775 1:+99589050 None:intergenic
GCTGTTGTTATAACAATAGG+AGG 0.530149 1:-99587771 MsG0180006063.01.T01:CDS
GACCGGACGGGGATAGTAGC+TGG 0.530833 1:+99589902 None:intergenic
AACTGGTGCTTTCTTCATGG+TGG 0.533216 1:+99589169 None:intergenic
ACGAGACTGCGAACCGGTGG+TGG 0.533492 1:+99589845 None:intergenic
ACAATAGGAGGGCTCGTAGC+CGG 0.533690 1:-99587759 MsG0180006063.01.T01:CDS
CAGCCCCAGCATAACCTGCA+GGG 0.534202 1:+99589051 None:intergenic
AGTGATCTTGGTCTACAAGC+TGG 0.534395 1:-99589125 MsG0180006063.01.T01:CDS
CACTCGTCAACGAGGAGCGT+GGG 0.536752 1:-99589776 MsG0180006063.01.T01:five_prime_UTR
CGGCAGAGATACGGTCGGAC+CGG 0.541076 1:+99589885 None:intergenic
TAGCCTTCACTGTCAACCCT+TGG 0.542711 1:+99587535 None:intergenic
GGGAGCGTATCCCTAGAAAT+GGG 0.543228 1:+99587688 None:intergenic
GGCGCGAAGTATATCATCAA+AGG 0.548559 1:+99589660 None:intergenic
AGAGATACGGTCGGACCGGA+CGG 0.551833 1:+99589889 None:intergenic
TGGAGTATATGGTGCACTGA+TGG 0.556326 1:-99589105 MsG0180006063.01.T01:CDS
AGGCATTGAACTATTAGCCT+GGG 0.559812 1:+99589205 None:intergenic
GGCCACGGTTCGGTGAGGAT+CGG 0.561057 1:+99589818 None:intergenic
CACCTTCTACGTAGCGGCCA+CGG 0.561943 1:+99589803 None:intergenic
CACCAGCTACTATCCCCGTC+CGG 0.566811 1:-99589904 MsG0180006063.01.T01:five_prime_UTR
AGCTTGTAGACCAAGATCAC+TGG 0.567895 1:+99589127 None:intergenic
AGATACGGTCGGACCGGACG+GGG 0.570930 1:+99589891 None:intergenic
CTACCAGCCAAGATAAGTCC+CGG 0.574753 1:+99589023 None:intergenic
CTACAGCTGATGCGGCCACA+GGG 0.576147 1:+99587491 None:intergenic
AACTGACCCTACAACAGCAC+CGG 0.576918 1:+99587740 None:intergenic
ATTTGCATGATCATGTCCAA+GGG 0.578012 1:-99587551 MsG0180006063.01.T01:three_prime_UTR
AGCCCCAGCATAACCTGCAG+GGG 0.587242 1:+99589052 None:intergenic
GGAGTATATGGTGCACTGAT+GGG 0.588659 1:-99589104 MsG0180006063.01.T01:CDS
GACGGGGATAGTAGCTGGTG+TGG 0.596353 1:+99589907 None:intergenic
GGTTTAACGAGACTGCGAAC+CGG 0.597083 1:+99589839 None:intergenic
TGTCCAAGGGTTGACAGTGA+AGG 0.597959 1:-99587538 MsG0180006063.01.T01:three_prime_UTR
ATCTTTGCAAGAAGCAACGA+TGG 0.607582 1:+99589630 None:intergenic
AGTGAAGGCTACTGTTATAG+GGG 0.611438 1:-99587523 MsG0180006063.01.T01:three_prime_UTR
GCACTCGTCAACGAGGAGCG+TGG 0.612531 1:-99589777 MsG0180006063.01.T01:five_prime_UTR
GCCCCAGCATAACCTGCAGG+GGG 0.620500 1:+99589053 None:intergenic
TTAATCTAGACAGGAAAACA+TGG 0.627995 1:-99587377 MsG0180006063.01.T01:three_prime_UTR
TGAAGCTGTTAGGTGTCGGA+AGG 0.628149 1:-99589688 MsG0180006063.01.T01:five_prime_UTR
GCACTGAAGCTGTTAGGTGT+CGG 0.633689 1:-99589692 MsG0180006063.01.T01:five_prime_UTR
CGTGGCCGCTACGTAGAAGG+TGG 0.636433 1:-99589802 MsG0180006063.01.T01:five_prime_UTR
CCAGTTCTCTACAGCTGATG+CGG 0.638669 1:+99587483 None:intergenic
ATGGTGGATTGCATCCATTG+AGG 0.641012 1:+99589185 None:intergenic
TTGTAGACCAAGATCACTGG+TGG 0.661997 1:+99589130 None:intergenic
AGACCAAGATCACTGGTGGA+AGG 0.664781 1:+99589134 None:intergenic
CTTCGCTAACAACAGCAGCA+GGG 0.671388 1:+99587668 None:intergenic
AACCGATCCTCACCGAACCG+TGG 0.674182 1:-99589820 MsG0180006063.01.T01:five_prime_UTR
CTGTTGTTATAACAATAGGA+GGG 0.684835 1:-99587770 MsG0180006063.01.T01:CDS
TTGTGTGTTGAAGAAATGTG+AGG 0.689449 1:+99589937 None:intergenic
TTAACGAGACTGCGAACCGG+TGG 0.689656 1:+99589842 None:intergenic
GTAGCGGCCACGGTTCGGTG+AGG 0.697717 1:+99589813 None:intergenic
TGCTTCCACCTTCTACGTAG+CGG 0.712698 1:+99589797 None:intergenic
TAGGGGTATAGCTGGCCCTG+TGG 0.725216 1:-99587506 MsG0180006063.01.T01:three_prime_UTR
GGTGGAAGCACTCGTCAACG+AGG 0.726269 1:-99589784 MsG0180006063.01.T01:five_prime_UTR
TTATGCAGAGGTTAACTCAG+CGG 0.730395 1:-99589286 MsG0180006063.01.T01:CDS
TGAACCGGCAGAGATACGGT+CGG 0.737243 1:+99589880 None:intergenic
TATGACATGTGCTTATGCAG+AGG 0.746437 1:-99589298 MsG0180006063.01.T01:exon
TTTCACTAACAAGATCAACA+GGG 0.765605 1:+99587424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGATATTAAAAGTTT+TGG - Chr1:99588828-99588847 MsG0180006063.01.T01:intron 15.0%
!! AAGCTAAAAATCAATTCTAA+AGG + Chr1:99589204-99589223 None:intergenic 20.0%
!! AAGTTGTTTATCTTAACAAA+TGG - Chr1:99588961-99588980 MsG0180006063.01.T01:intron 20.0%
!! ATTATGAATGTCTACAAAAT+TGG + Chr1:99588688-99588707 None:intergenic 20.0%
!!! AACTTTTAATATCAAAAGTC+TGG + Chr1:99588827-99588846 None:intergenic 20.0%
!!! ACTTTTAATATCAAAAGTCT+GGG + Chr1:99588826-99588845 None:intergenic 20.0%
!!! TTAACTTGAAGATAGAATTT+GGG - Chr1:99589171-99589190 MsG0180006063.01.T01:CDS 20.0%
!!! TTTAACTTGAAGATAGAATT+TGG - Chr1:99589170-99589189 MsG0180006063.01.T01:CDS 20.0%
!!! TTTTGTAGACATTCATAATA+AGG - Chr1:99588689-99588708 MsG0180006063.01.T01:intron 20.0%
! AAAGAATGTTAAGTTAGGTA+AGG - Chr1:99588218-99588237 MsG0180006063.01.T01:intron 25.0%
! AAATAGCTTATAGCTTATAC+AGG + Chr1:99587692-99587711 None:intergenic 25.0%
! AAATGTACAGTTTCAATAAG+AGG + Chr1:99588563-99588582 None:intergenic 25.0%
! AATGTACAGTTTCAATAAGA+GGG + Chr1:99588562-99588581 None:intergenic 25.0%
! ACATTGATATTGTAATGCAA+TGG - Chr1:99588254-99588273 MsG0180006063.01.T01:intron 25.0%
! ACCAAAAAGAATGTTAAGTT+AGG - Chr1:99588213-99588232 MsG0180006063.01.T01:intron 25.0%
! AGAAATGAAGTCTATTCAAT+AGG + Chr1:99588795-99588814 None:intergenic 25.0%
! ATGAAATGTAGTTGTTTATC+TGG - Chr1:99589969-99589988 MsG0180006063.01.T01:five_prime_UTR 25.0%
! CAAAATCAATTATACACCTT+TGG + Chr1:99589101-99589120 None:intergenic 25.0%
! GAATAAAGTAAGCATTTAGA+TGG - Chr1:99588322-99588341 MsG0180006063.01.T01:intron 25.0%
! GTTAGTGAAATCATAATTCT+TGG - Chr1:99589777-99589796 MsG0180006063.01.T01:five_prime_UTR 25.0%
! TAACTTGAAGATAGAATTTG+GGG - Chr1:99589172-99589191 MsG0180006063.01.T01:CDS 25.0%
! TAATTCTATACACCTATTGA+TGG - Chr1:99587837-99587856 MsG0180006063.01.T01:intron 25.0%
! TAGTTTAAGAAAGAGGTAAA+CGG + Chr1:99589032-99589051 None:intergenic 25.0%
!! ACCTAACTTAACATTCTTTT+TGG + Chr1:99588217-99588236 None:intergenic 25.0%
!! CTTCAAGTTAAAATAAATCC+TGG + Chr1:99589162-99589181 None:intergenic 25.0%
!! TAGAACTTTTCTTTCAACAA+AGG + Chr1:99588412-99588431 None:intergenic 25.0%
!!! AGGGTTTTATTTACCTAATA+TGG - Chr1:99588902-99588921 MsG0180006063.01.T01:intron 25.0%
!!! ATAATTGATTTTGGCATGTT+TGG - Chr1:99589108-99589127 MsG0180006063.01.T01:CDS 25.0%
!!! CAAAGGTGTATAATTGATTT+TGG - Chr1:99589099-99589118 MsG0180006063.01.T01:CDS 25.0%
!!! GAGATTGTTTCTGTATAAAA+TGG - Chr1:99588924-99588943 MsG0180006063.01.T01:intron 25.0%
AAAGCTATTCAGATGAAAGT+AGG + Chr1:99589243-99589262 None:intergenic 30.0%
AAATGCTATGCTAATCCAAA+AGG + Chr1:99589342-99589361 None:intergenic 30.0%
AAGGCTGTTGTTATAACAAT+AGG - Chr1:99589414-99589433 MsG0180006063.01.T01:intron 30.0%
ACAGAAACAATCTCCATATT+AGG + Chr1:99588918-99588937 None:intergenic 30.0%
ACATTTCTTCAACACACAAA+TGG - Chr1:99587255-99587274 MsG0180006063.01.T01:three_prime_UTR 30.0%
ATGAAGTCTATTCAATAGGT+TGG + Chr1:99588791-99588810 None:intergenic 30.0%
ATGTACAGTTTCAATAAGAG+GGG + Chr1:99588561-99588580 None:intergenic 30.0%
ATTTCACTAACAAGATCAAC+AGG + Chr1:99589768-99589787 None:intergenic 30.0%
CAAATCAACAACAAGTAAAG+TGG + Chr1:99587611-99587630 None:intergenic 30.0%
CAAGTTAAAATAAATCCTGG+AGG + Chr1:99589159-99589178 None:intergenic 30.0%
CATTCTTTGTCGAAACAATA+AGG - Chr1:99588765-99588784 MsG0180006063.01.T01:intron 30.0%
CCAAAAGGATTAAGTGTATT+TGG + Chr1:99589327-99589346 None:intergenic 30.0%
CCATTAGAACTTTAACCAAT+AGG - Chr1:99588507-99588526 MsG0180006063.01.T01:intron 30.0%
CTGAGAATAGTTTAAGAAAG+AGG + Chr1:99589039-99589058 None:intergenic 30.0%
CTGTTGTTATAACAATAGGA+GGG - Chr1:99589418-99589437 MsG0180006063.01.T01:intron 30.0%
CTTATTGTTTCGACAAAGAA+TGG + Chr1:99588767-99588786 None:intergenic 30.0%
TAACCTGAGAAATAGTTTCT+TGG + Chr1:99587586-99587605 None:intergenic 30.0%
TACATGAATTTCAAGACCAT+GGG + Chr1:99587749-99587768 None:intergenic 30.0%
TAGATATTGTCCCATTTCTA+GGG - Chr1:99589490-99589509 MsG0180006063.01.T01:intron 30.0%
TCAGTTTCACTAAAGTTATG+TGG - Chr1:99588466-99588485 MsG0180006063.01.T01:intron 30.0%
TCTCTTTACTTAATCTAGAC+AGG - Chr1:99589802-99589821 MsG0180006063.01.T01:five_prime_UTR 30.0%
TTAATCTAGACAGGAAAACA+TGG - Chr1:99589811-99589830 MsG0180006063.01.T01:five_prime_UTR 30.0%
TTACATCCTAAAAATGCTTG+AGG + Chr1:99589921-99589940 None:intergenic 30.0%
TTTCACTAACAAGATCAACA+GGG + Chr1:99589767-99589786 None:intergenic 30.0%
! ATAGAAAAGGGAAGTGTAAA+AGG + Chr1:99589384-99589403 None:intergenic 30.0%
! ATCATACCTCAAGCATTTTT+AGG - Chr1:99589912-99589931 MsG0180006063.01.T01:five_prime_UTR 30.0%
! ATGGAATTTTTGTTCATGAG+TGG - Chr1:99588273-99588292 MsG0180006063.01.T01:intron 30.0%
! ATGGATTTCTGTGCATTTTT+AGG - Chr1:99587856-99587875 MsG0180006063.01.T01:intron 30.0%
! CCAAATACACTTAATCCTTT+TGG - Chr1:99589324-99589343 MsG0180006063.01.T01:intron 30.0%
! CCTATTGGTTAAAGTTCTAA+TGG + Chr1:99588510-99588529 None:intergenic 30.0%
! TCTAATGGATCTAATTCATG+TGG + Chr1:99588495-99588514 None:intergenic 30.0%
! TGTAGAAATTGTCCCATTTT+GGG - Chr1:99589732-99589751 MsG0180006063.01.T01:five_prime_UTR 30.0%
!! ATTCGTATTGACTTGTATCA+TGG - Chr1:99588300-99588319 MsG0180006063.01.T01:intron 30.0%
AACTAGAGACTGAAATTGTG+AGG + Chr1:99587794-99587813 None:intergenic 35.0%
AAGCATTTAGATGGCCATAA+TGG - Chr1:99588331-99588350 MsG0180006063.01.T01:intron 35.0%
AGAAATGTGAGGCTTGAAAT+TGG + Chr1:99587243-99587262 None:intergenic 35.0%
AGCATTTAGATGGCCATAAT+GGG - Chr1:99588332-99588351 MsG0180006063.01.T01:intron 35.0%
ATGCACAGAAATCCATCAAT+AGG + Chr1:99587852-99587871 None:intergenic 35.0%
ATTTGCATGATCATGTCCAA+GGG - Chr1:99589637-99589656 MsG0180006063.01.T01:five_prime_UTR 35.0%
CATAATCATCTCTCAGTTCT+TGG - Chr1:99589544-99589563 MsG0180006063.01.T01:intron 35.0%
CCTTGTATCAAAAGCAAACA+TGG - Chr1:99589837-99589856 MsG0180006063.01.T01:five_prime_UTR 35.0%
CTAATAGTTCAATGCCTCAA+TGG - Chr1:99587989-99588008 MsG0180006063.01.T01:intron 35.0%
CTTTAACCAATAGGAGATAG+TGG - Chr1:99588516-99588535 MsG0180006063.01.T01:intron 35.0%
GCTGTTGTTATAACAATAGG+AGG - Chr1:99589417-99589436 MsG0180006063.01.T01:intron 35.0%
GTACATGAATTTCAAGACCA+TGG + Chr1:99587750-99587769 None:intergenic 35.0%
GTAGATATTGTCCCATTTCT+AGG - Chr1:99589489-99589508 MsG0180006063.01.T01:intron 35.0%
TTCAACAAAGGCAAACATGA+AGG + Chr1:99588400-99588419 None:intergenic 35.0%
TTCCCTGCAGAAATAGAAAA+GGG + Chr1:99589396-99589415 None:intergenic 35.0%
TTCTAACCACTATCTCCTAT+TGG + Chr1:99588525-99588544 None:intergenic 35.0%
TTCTTATACTGCTAATCTGC+TGG - Chr1:99588853-99588872 MsG0180006063.01.T01:intron 35.0%
TTGTGTGTTGAAGAAATGTG+AGG + Chr1:99587254-99587273 None:intergenic 35.0%
! ACAAATGGTACTTCTAGTTG+TGG - Chr1:99588976-99588995 MsG0180006063.01.T01:CDS 35.0%
! CAAATGGTACTTCTAGTTGT+GGG - Chr1:99588977-99588996 MsG0180006063.01.T01:CDS 35.0%
! CTGTAGAAATTGTCCCATTT+TGG - Chr1:99589731-99589750 MsG0180006063.01.T01:five_prime_UTR 35.0%
! TGACCAAGAAACTATTTCTC+AGG - Chr1:99587580-99587599 MsG0180006063.01.T01:three_prime_UTR 35.0%
! TTGGCATGTTTGGATGTTTT+CGG - Chr1:99589118-99589137 MsG0180006063.01.T01:CDS 35.0%
!! ATAGAATTGATTTTGCCTCC+AGG - Chr1:99589141-99589160 MsG0180006063.01.T01:CDS 35.0%
!! ATGGGTTTGACCTATTTTAG+TGG - Chr1:99588102-99588121 MsG0180006063.01.T01:intron 35.0%
!! ATTAAGTGTATTTGGCTCTG+CGG + Chr1:99589319-99589338 None:intergenic 35.0%
!! CCATGTTTGCTTTTGATACA+AGG + Chr1:99589840-99589859 None:intergenic 35.0%
!! CTTTTTGGTCATGAAGTACA+AGG + Chr1:99588202-99588221 None:intergenic 35.0%
!!! TACACCTTTGGAGTCAATTT+TGG + Chr1:99589089-99589108 None:intergenic 35.0%
!!! TTCCCTTTTCTATTTCTGCA+GGG - Chr1:99589391-99589410 MsG0180006063.01.T01:intron 35.0%
AATCTGCTGGATATTACTGC+TGG - Chr1:99588866-99588885 MsG0180006063.01.T01:intron 40.0%
ACAGTGAAGGCTACTGTTAT+AGG - Chr1:99589663-99589682 MsG0180006063.01.T01:five_prime_UTR 40.0%
AGTGAAGGCTACTGTTATAG+GGG - Chr1:99589665-99589684 MsG0180006063.01.T01:five_prime_UTR 40.0%
ATCTTTGCAAGAAGCAACGA+TGG + Chr1:99587561-99587580 None:intergenic 40.0%
ATGAGTGGTATGAGTATGCA+AGG - Chr1:99588613-99588632 MsG0180006063.01.T01:intron 40.0%
CAGTGAAGGCTACTGTTATA+GGG - Chr1:99589664-99589683 MsG0180006063.01.T01:five_prime_UTR 40.0%
CATTTGCATGATCATGTCCA+AGG - Chr1:99589636-99589655 MsG0180006063.01.T01:five_prime_UTR 40.0%
CGAAGAAGAGCCACTAAAAT+AGG + Chr1:99588115-99588134 None:intergenic 40.0%
CTAAGGTAGACAGGAAAACT+TGG - Chr1:99589578-99589597 MsG0180006063.01.T01:intron 40.0%
CTTCCCTGCAGAAATAGAAA+AGG + Chr1:99589397-99589416 None:intergenic 40.0%
GAAGGTGACTCAATTGAAAC+TGG + Chr1:99588039-99588058 None:intergenic 40.0%
GACTGAAATTGTGAGGAATC+AGG + Chr1:99587787-99587806 None:intergenic 40.0%
TATGACATGTGCTTATGCAG+AGG - Chr1:99587890-99587909 MsG0180006063.01.T01:intron 40.0%
TCTTGGTTTCGCTATACCTA+AGG - Chr1:99589561-99589580 MsG0180006063.01.T01:intron 40.0%
TGAAACTGGTGCTTTCTTCA+TGG + Chr1:99588025-99588044 None:intergenic 40.0%
TGAAGACACAAAGCAATGAG+TGG - Chr1:99588598-99588617 MsG0180006063.01.T01:intron 40.0%
TTATGCAGAGGTTAACTCAG+CGG - Chr1:99587902-99587921 MsG0180006063.01.T01:intron 40.0%
! AATTGTCCCATTTTGGGCAT+AGG - Chr1:99589738-99589757 MsG0180006063.01.T01:five_prime_UTR 40.0%
! AGAAGCAACGATGGAGTTTT+TGG + Chr1:99587552-99587571 None:intergenic 40.0%
! AGAGCCAAAATTGACTCCAA+AGG - Chr1:99589082-99589101 MsG0180006063.01.T01:CDS 40.0%
! ATTTAGATGGCCATAATGGG+TGG - Chr1:99588335-99588354 MsG0180006063.01.T01:intron 40.0%
! CAAGTTTTCCTGTCTACCTT+AGG + Chr1:99589580-99589599 None:intergenic 40.0%
! GAAAAGGGAAGTGTAAAAGG+AGG + Chr1:99589381-99589400 None:intergenic 40.0%
! TACTGTTATAGGGGTATAGC+TGG - Chr1:99589674-99589693 MsG0180006063.01.T01:five_prime_UTR 40.0%
! TTTTCAACCGACATCTCGAA+CGG + Chr1:99587475-99587494 None:intergenic 40.0%
!! AGGCATTGAACTATTAGCCT+GGG + Chr1:99587986-99588005 None:intergenic 40.0%
!! TTTAGATGGCCATAATGGGT+GGG - Chr1:99588336-99588355 MsG0180006063.01.T01:intron 40.0%
!!! CTTCCCTTTTCTATTTCTGC+AGG - Chr1:99589390-99589409 MsG0180006063.01.T01:intron 40.0%
!!! CTTTTCTATTTCTGCAGGGA+AGG - Chr1:99589395-99589414 MsG0180006063.01.T01:intron 40.0%
!!! TTCTGTGCATTTTTAGGTCG+AGG - Chr1:99587862-99587881 MsG0180006063.01.T01:intron 40.0%
AACTGGTGCTTTCTTCATGG+TGG + Chr1:99588022-99588041 None:intergenic 45.0%
AAGATGAACCGGCAGAGATA+CGG + Chr1:99587315-99587334 None:intergenic 45.0%
AGCTTGTAGACCAAGATCAC+TGG + Chr1:99588064-99588083 None:intergenic 45.0%
AGGGAATCCTATGCCCAAAA+TGG + Chr1:99589748-99589767 None:intergenic 45.0%
AGTGATCTTGGTCTACAAGC+TGG - Chr1:99588063-99588082 MsG0180006063.01.T01:intron 45.0%
AGTTGTAGAGAACTGGTTGC+AGG - Chr1:99589467-99589486 MsG0180006063.01.T01:intron 45.0%
CTTATCTTGGCTGGTAGCTT+TGG - Chr1:99588171-99588190 MsG0180006063.01.T01:intron 45.0%
GAAAACGCACTGAAGCTGTT+AGG - Chr1:99587490-99587509 MsG0180006063.01.T01:three_prime_UTR 45.0%
GGCGCGAAGTATATCATCAA+AGG + Chr1:99587531-99587550 None:intergenic 45.0%
GGGAATCCTATGCCCAAAAT+GGG + Chr1:99589747-99589766 None:intergenic 45.0%
GGTCTACAAGCTGGAGTATA+TGG - Chr1:99588072-99588091 MsG0180006063.01.T01:intron 45.0%
GTGAGGAATCAGGACATCAA+GGG + Chr1:99587777-99587796 None:intergenic 45.0%
TAGGGTCAGTTGTAGAGAAC+TGG - Chr1:99589460-99589479 MsG0180006063.01.T01:intron 45.0%
TCGCTATACCTAAGGTAGAC+AGG - Chr1:99589569-99589588 MsG0180006063.01.T01:intron 45.0%
TGAGGAATCAGGACATCAAG+GGG + Chr1:99587776-99587795 None:intergenic 45.0%
TGATGTTCCGGGACTTATCT+TGG - Chr1:99588158-99588177 MsG0180006063.01.T01:intron 45.0%
TGGAGTATATGGTGCACTGA+TGG - Chr1:99588083-99588102 MsG0180006063.01.T01:intron 45.0%
TGTAAAACGTGTTCAGTCCC+AGG - Chr1:99587966-99587985 MsG0180006063.01.T01:intron 45.0%
TGTGAGGAATCAGGACATCA+AGG + Chr1:99587778-99587797 None:intergenic 45.0%
TTGGTGCACTGTATGATGCA+AGG + Chr1:99588669-99588688 None:intergenic 45.0%
TTGTAGACCAAGATCACTGG+TGG + Chr1:99588061-99588080 None:intergenic 45.0%
! ATGGTACTTCTAGTTGTGGG+TGG - Chr1:99588980-99588999 MsG0180006063.01.T01:CDS 45.0%
! CATGCTTGAGTTTTTGCCCA+TGG - Chr1:99587730-99587749 MsG0180006063.01.T01:CDS 45.0%
! GGAGTATATGGTGCACTGAT+GGG - Chr1:99588084-99588103 MsG0180006063.01.T01:intron 45.0%
! TGGTCTTGGGAAAGATGAAC+CGG + Chr1:99587326-99587345 None:intergenic 45.0%
!! ATGGTGGATTGCATCCATTG+AGG + Chr1:99588006-99588025 None:intergenic 45.0%
!! GAGGCATTGAACTATTAGCC+TGG + Chr1:99587987-99588006 None:intergenic 45.0%
!! TGCTGGTGTCTTTGAAGTGA+GGG - Chr1:99588883-99588902 MsG0180006063.01.T01:intron 45.0%
AACTGACCCTACAACAGCAC+CGG + Chr1:99589451-99589470 None:intergenic 50.0%
ACTTCGCTAACAACAGCAGC+AGG + Chr1:99589524-99589543 None:intergenic 50.0%
AGACCAAGATCACTGGTGGA+AGG + Chr1:99588057-99588076 None:intergenic 50.0%
ATCTTTCCCAAGACCACCAC+CGG - Chr1:99587330-99587349 MsG0180006063.01.T01:three_prime_UTR 50.0%
CCAGTTCTCTACAGCTGATG+CGG + Chr1:99589708-99589727 None:intergenic 50.0%
CTACCAGCCAAGATAAGTCC+CGG + Chr1:99588168-99588187 None:intergenic 50.0%
CTTCGCTAACAACAGCAGCA+GGG + Chr1:99589523-99589542 None:intergenic 50.0%
GCACTGAAGCTGTTAGGTGT+CGG - Chr1:99587496-99587515 MsG0180006063.01.T01:three_prime_UTR 50.0%
GGTTTAACGAGACTGCGAAC+CGG + Chr1:99587352-99587371 None:intergenic 50.0%
TAGCCTTCACTGTCAACCCT+TGG + Chr1:99589656-99589675 None:intergenic 50.0%
TCACCTTCCACCAGTGATCT+TGG - Chr1:99588051-99588070 MsG0180006063.01.T01:intron 50.0%
TCCTACTCTCCCACCCATTA+TGG + Chr1:99588348-99588367 None:intergenic 50.0%
TGCTTCCACCTTCTACGTAG+CGG + Chr1:99587394-99587413 None:intergenic 50.0%
TGTCCAAGGGTTGACAGTGA+AGG - Chr1:99589650-99589669 MsG0180006063.01.T01:five_prime_UTR 50.0%
TTATGCTGGGGCTGATGTTC+CGG - Chr1:99588146-99588165 MsG0180006063.01.T01:intron 50.0%
! AGGGAGCGTATCCCTAGAAA+TGG + Chr1:99589504-99589523 None:intergenic 50.0%
! GGGAGCGTATCCCTAGAAAT+GGG + Chr1:99589503-99589522 None:intergenic 50.0%
!! CTGCTGGTGTCTTTGAAGTG+AGG - Chr1:99588882-99588901 MsG0180006063.01.T01:intron 50.0%
!! TGAAGCTGTTAGGTGTCGGA+AGG - Chr1:99587500-99587519 MsG0180006063.01.T01:three_prime_UTR 50.0%
ACAATAGGAGGGCTCGTAGC+CGG - Chr1:99589429-99589448 MsG0180006063.01.T01:intron 55.0%
CCGCATCAGCTGTAGAGAAC+TGG - Chr1:99589705-99589724 MsG0180006063.01.T01:five_prime_UTR 55.0%
CTCAGCACCGTTCGAGATGT+CGG - Chr1:99587465-99587484 MsG0180006063.01.T01:three_prime_UTR 55.0%
GTTCCGGGACTTATCTTGGC+TGG - Chr1:99588162-99588181 MsG0180006063.01.T01:intron 55.0%
TATGCTGGGGCTGATGTTCC+GGG - Chr1:99588147-99588166 MsG0180006063.01.T01:intron 55.0%
TGAACCGGCAGAGATACGGT+CGG + Chr1:99587311-99587330 None:intergenic 55.0%
TTAACGAGACTGCGAACCGG+TGG + Chr1:99587349-99587368 None:intergenic 55.0%
!! GCCATAATGGGTGGGAGAGT+AGG - Chr1:99588344-99588363 MsG0180006063.01.T01:intron 55.0%
!! TCGTAGCCGGTGCTGTTGTA+GGG - Chr1:99589442-99589461 MsG0180006063.01.T01:intron 55.0%
AACCGATCCTCACCGAACCG+TGG - Chr1:99587368-99587387 MsG0180006063.01.T01:three_prime_UTR 60.0%
AACCGTGGCCGCTACGTAGA+AGG - Chr1:99587383-99587402 MsG0180006063.01.T01:three_prime_UTR 60.0%
AGAGATACGGTCGGACCGGA+CGG + Chr1:99587302-99587321 None:intergenic 60.0%
AGCCCCAGCATAACCTGCAG+GGG + Chr1:99588139-99588158 None:intergenic 60.0%
AGGTTAACTCAGCGGCGAGC+AGG - Chr1:99587910-99587929 MsG0180006063.01.T01:intron 60.0%
CACCAGCTACTATCCCCGTC+CGG - Chr1:99587284-99587303 MsG0180006063.01.T01:three_prime_UTR 60.0%
CACCTTCTACGTAGCGGCCA+CGG + Chr1:99587388-99587407 None:intergenic 60.0%
CAGCCCCAGCATAACCTGCA+GGG + Chr1:99588140-99588159 None:intergenic 60.0%
CTACAGCTGATGCGGCCACA+GGG + Chr1:99589700-99589719 None:intergenic 60.0%
GACGGGGATAGTAGCTGGTG+TGG + Chr1:99587284-99587303 None:intergenic 60.0%
TCAGCCCCAGCATAACCTGC+AGG + Chr1:99588141-99588160 None:intergenic 60.0%
TCTACAGCTGATGCGGCCAC+AGG + Chr1:99589701-99589720 None:intergenic 60.0%
TCTACGTAGCGGCCACGGTT+CGG + Chr1:99587383-99587402 None:intergenic 60.0%
! CACTCGTCAACGAGGAGCGT+GGG - Chr1:99587412-99587431 MsG0180006063.01.T01:three_prime_UTR 60.0%
! TAGGGGTATAGCTGGCCCTG+TGG - Chr1:99589682-99589701 MsG0180006063.01.T01:five_prime_UTR 60.0%
! TGCGAACCGGTGGTGGTCTT+GGG + Chr1:99587339-99587358 None:intergenic 60.0%
!! CTCGTAGCCGGTGCTGTTGT+AGG - Chr1:99589441-99589460 MsG0180006063.01.T01:intron 60.0%
!! GGTGGAAGCACTCGTCAACG+AGG - Chr1:99587404-99587423 MsG0180006063.01.T01:three_prime_UTR 60.0%
ACGAGACTGCGAACCGGTGG+TGG + Chr1:99587346-99587365 None:intergenic 65.0%
AGATACGGTCGGACCGGACG+GGG + Chr1:99587300-99587319 None:intergenic 65.0%
CGCCCCCTGCAGGTTATGCT+GGG - Chr1:99588133-99588152 MsG0180006063.01.T01:intron 65.0%
CGGCAGAGATACGGTCGGAC+CGG + Chr1:99587306-99587325 None:intergenic 65.0%
CGGTCCGACCGTATCTCTGC+CGG - Chr1:99587304-99587323 MsG0180006063.01.T01:three_prime_UTR 65.0%
CGTGGCCGCTACGTAGAAGG+TGG - Chr1:99587386-99587405 MsG0180006063.01.T01:three_prime_UTR 65.0%
GACCGGACGGGGATAGTAGC+TGG + Chr1:99587289-99587308 None:intergenic 65.0%
GAGATACGGTCGGACCGGAC+GGG + Chr1:99587301-99587320 None:intergenic 65.0%
GCACTCGTCAACGAGGAGCG+TGG - Chr1:99587411-99587430 MsG0180006063.01.T01:three_prime_UTR 65.0%
GCCCCAGCATAACCTGCAGG+GGG + Chr1:99588138-99588157 None:intergenic 65.0%
GCCCCCTGCAGGTTATGCTG+GGG - Chr1:99588134-99588153 MsG0180006063.01.T01:intron 65.0%
TCGCCCCCTGCAGGTTATGC+TGG - Chr1:99588132-99588151 MsG0180006063.01.T01:intron 65.0%
! CTGCGAACCGGTGGTGGTCT+TGG + Chr1:99587340-99587359 None:intergenic 65.0%
! GTCAACGAGGAGCGTGGGAC+CGG - Chr1:99587417-99587436 MsG0180006063.01.T01:three_prime_UTR 65.0%
!! GGCCACGGTTCGGTGAGGAT+CGG + Chr1:99587373-99587392 None:intergenic 65.0%
GCGCGCGAACTCGCCTGAAC+CGG + Chr1:99587439-99587458 None:intergenic 70.0%
GGCTCTTCTTCGCCCCCTGC+AGG - Chr1:99588123-99588142 MsG0180006063.01.T01:intron 70.0%
! GAGGAGCGTGGGACCGGTTC+AGG - Chr1:99587423-99587442 MsG0180006063.01.T01:three_prime_UTR 70.0%
!! GTAGCGGCCACGGTTCGGTG+AGG + Chr1:99587378-99587397 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99587208 99590002 99587208 ID=MsG0180006063.01;Name=MsG0180006063.01
Chr1 mRNA 99587208 99590002 99587208 ID=MsG0180006063.01.T01;Parent=MsG0180006063.01;Name=MsG0180006063.01.T01;_AED=0.29;_eAED=0.29;_QI=420|1|1|1|0.5|0.33|3|454|155
Chr1 exon 99587208 99587798 99587208 ID=MsG0180006063.01.T01:exon:9683;Parent=MsG0180006063.01.T01
Chr1 exon 99588976 99589332 99588976 ID=MsG0180006063.01.T01:exon:9682;Parent=MsG0180006063.01.T01
Chr1 exon 99589609 99590002 99589609 ID=MsG0180006063.01.T01:exon:9681;Parent=MsG0180006063.01.T01
Chr1 five_prime_UTR 99589609 99590002 99589609 ID=MsG0180006063.01.T01:five_prime_utr;Parent=MsG0180006063.01.T01
Chr1 five_prime_UTR 99589307 99589332 99589307 ID=MsG0180006063.01.T01:five_prime_utr;Parent=MsG0180006063.01.T01
Chr1 CDS 99588976 99589306 99588976 ID=MsG0180006063.01.T01:cds;Parent=MsG0180006063.01.T01
Chr1 CDS 99587662 99587798 99587662 ID=MsG0180006063.01.T01:cds;Parent=MsG0180006063.01.T01
Chr1 three_prime_UTR 99587208 99587661 99587208 ID=MsG0180006063.01.T01:three_prime_utr;Parent=MsG0180006063.01.T01
Gene Sequence

>MsG0180006063.01.T01

ATGCAGAGGTTAACTCAGCGGCGAGCAGGAAAAGTAGTGAGCAGCAGTGTTCGTTATGCTGATGTAAAACGTGTTCAGTCCCAGGCTAATAGTTCAATGCCTCAATGGATGCAATCCACCATGAAGAAAGCACCAGTTTCAATTGAGTCACCTTCCACCAGTGATCTTGGTCTACAAGCTGGAGTATATGGTGCACTGATGGGTTTGACCTATTTTAGTGGCTCTTCTTCGCCCCCTGCAGGTTATGCTGGGGCTGATGTTCCGGGACTTATCTTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACCAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGTTATAACAATAGGAGGGCTCGTAGCCGGTGCTGTTGTAGGGTCAGTTGTAGAGAACTGGTTGCAGGTAGATATTGTCCCATTTCTAGGGATACGCTCCCTGCTGCTGTTGTTAGCGAAGTCATAA

Protein sequence

>MsG0180006063.01.T01

MQRLTQRRAGKVVSSSVRYADVKRVQSQANSSMPQWMQSTMKKAPVSIESPSTSDLGLQAGVYGALMGLTYFSGSSSPPAGYAGADVPGLILAGSFGASLYFMTKKNVKLGKAVVITIGGLVAGAVVGSVVENWLQVDIVPFLGIRSLLLLLAKS*