AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047493.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047493.01.T01 MTR_4g128400 96.886 289 9 0 1 289 1 289 0.0 583
MsG0880047493.01.T01 MTR_4g128410 73.929 280 71 1 8 285 3 282 1.26e-161 451
MsG0880047493.01.T01 MTR_7g093530 75.000 276 67 1 12 285 6 281 1.79e-155 435
MsG0880047493.01.T01 MTR_4g128580 74.627 268 64 1 21 284 19 286 2.68e-149 420
MsG0880047493.01.T01 MTR_4g128570 68.551 283 74 2 4 285 6 274 1.05e-147 415
MsG0880047493.01.T01 MTR_4g126920 69.708 274 78 2 13 285 14 283 3.16e-139 394
MsG0880047493.01.T01 MTR_8g081040 63.066 287 98 2 1 284 1 282 5.60e-135 383
MsG0880047493.01.T01 MTR_2g038860 63.571 280 97 1 9 283 7 286 6.55e-135 384
MsG0880047493.01.T01 MTR_2g038705 63.571 280 97 1 9 283 7 286 6.55e-135 384
MsG0880047493.01.T01 MTR_4g128590 64.261 291 80 4 1 283 1 275 6.16e-132 375
MsG0880047493.01.T01 MTR_3g084630 63.604 283 97 1 1 283 1 277 1.18e-130 372
MsG0880047493.01.T01 MTR_3g084620 63.604 283 97 1 1 283 1 277 1.30e-130 372
MsG0880047493.01.T01 MTR_8g102220 57.746 284 101 3 1 283 1 266 2.85e-117 338
MsG0880047493.01.T01 MTR_8g102910 51.957 281 124 5 11 283 2 279 6.59e-102 299
MsG0880047493.01.T01 MTR_6g088320 52.878 278 123 4 11 283 9 283 1.58e-101 298
MsG0880047493.01.T01 MTR_5g091730 48.601 286 139 2 2 287 5 282 3.78e-99 293
MsG0880047493.01.T01 MTR_6g033085 50.000 292 130 5 4 284 2 288 9.39e-96 284
MsG0880047493.01.T01 MTR_6g033055 50.178 281 126 4 15 284 11 288 4.32e-95 282
MsG0880047493.01.T01 MTR_4g097640 47.423 291 141 6 1 283 1 287 1.03e-93 279
MsG0880047493.01.T01 MTR_4g097670 47.423 291 141 6 1 283 1 287 1.03e-93 279
MsG0880047493.01.T01 MTR_4g097700 51.163 258 118 5 30 283 71 324 1.95e-93 280
MsG0880047493.01.T01 MTR_7g084760 49.466 281 126 5 11 283 15 287 1.29e-92 276
MsG0880047493.01.T01 MTR_3g089540 51.613 248 117 1 36 283 38 282 2.45e-92 275
MsG0880047493.01.T01 MTR_7g084750 53.600 250 114 2 35 283 39 287 4.00e-92 275
MsG0880047493.01.T01 MTR_7g084770 51.128 266 118 4 22 283 30 287 4.27e-92 275
MsG0880047493.01.T01 MTR_1g105900 48.120 266 136 1 22 285 28 293 8.53e-91 271
MsG0880047493.01.T01 MTR_2g089140 51.200 250 112 3 44 284 39 287 2.48e-90 270
MsG0880047493.01.T01 MTR_4g045853 45.302 298 150 4 1 289 1 294 1.76e-89 268
MsG0880047493.01.T01 MTR_1g105495 42.857 294 153 5 3 285 7 296 5.40e-81 247
MsG0880047493.01.T01 MTR_2g089140 50.667 225 101 3 69 284 1 224 1.64e-80 243
MsG0880047493.01.T01 MTR_8g013055 47.451 255 131 3 30 283 33 285 3.34e-77 236
MsG0880047493.01.T01 MTR_7g056090 40.206 291 159 8 1 286 4 284 3.60e-62 198
MsG0880047493.01.T01 MTR_4g057450 42.975 242 123 6 50 283 70 304 5.84e-60 193
MsG0880047493.01.T01 MTR_7g102260 40.226 266 142 7 27 284 36 292 2.73e-59 191
MsG0880047493.01.T01 MTR_1g063020 39.700 267 140 8 27 283 39 294 3.95e-58 188
MsG0880047493.01.T01 MTR_2g095800 39.130 253 139 6 30 274 56 301 4.68e-56 183
MsG0880047493.01.T01 MTR_2g049130 41.016 256 140 6 30 283 31 277 5.72e-56 182
MsG0880047493.01.T01 MTR_8g064180 38.462 260 147 7 35 283 53 310 6.59e-55 180
MsG0880047493.01.T01 MTR_1g033420 39.163 263 143 8 36 288 41 296 5.90e-54 178
MsG0880047493.01.T01 MTR_2g049030 38.400 250 144 7 36 281 38 281 8.47e-53 174
MsG0880047493.01.T01 MTR_5g029100 37.931 261 148 6 36 285 50 307 3.59e-50 169
MsG0880047493.01.T01 MTR_5g029100 36.614 254 147 6 43 285 26 276 5.87e-46 157
MsG0880047493.01.T01 MTR_8g090100 34.848 264 157 9 36 289 29 287 1.63e-43 151
MsG0880047493.01.T01 MTR_8g479340 42.574 101 49 3 190 285 41 137 4.56e-21 87.4
MsG0880047493.01.T01 MTR_8g032640 34.302 172 105 5 50 219 33 198 2.01e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047493.01.T01 AT4G25810 69.818 275 81 1 11 283 9 283 8.41e-151 423
MsG0880047493.01.T01 AT5G57560 65.591 279 93 1 8 283 3 281 1.03e-144 408
MsG0880047493.01.T01 AT5G57550 68.116 276 85 1 8 283 10 282 1.37e-144 407
MsG0880047493.01.T01 AT4G30270 65.836 281 81 3 7 287 4 269 9.12e-139 392
MsG0880047493.01.T01 AT2G18800 62.252 302 101 4 1 289 1 302 1.01e-137 391
MsG0880047493.01.T01 AT5G48070 63.669 278 96 2 8 284 9 282 1.78e-136 387
MsG0880047493.01.T01 AT4G30280 64.029 278 95 2 8 284 9 282 1.14e-130 372
MsG0880047493.01.T01 AT3G23730 60.289 277 106 1 11 283 10 286 2.55e-129 369
MsG0880047493.01.T01 AT4G14130 61.679 274 104 1 11 283 11 284 9.54e-129 368
MsG0880047493.01.T01 AT5G57530 63.462 260 95 0 26 285 25 284 2.05e-127 364
MsG0880047493.01.T01 AT4G30290 62.590 278 99 2 8 284 4 277 3.59e-127 363
MsG0880047493.01.T01 AT5G57540 61.303 261 101 0 25 285 23 283 3.85e-125 358
MsG0880047493.01.T01 AT1G65310 64.639 263 88 2 23 284 46 304 6.52e-125 358
MsG0880047493.01.T01 AT1G65310 64.639 263 88 2 23 284 24 282 6.84e-125 358
MsG0880047493.01.T01 AT4G25820 60.755 265 104 0 21 285 23 287 1.05e-121 350
MsG0880047493.01.T01 AT5G65730 47.122 278 138 6 11 283 17 290 7.07e-92 274
MsG0880047493.01.T01 AT5G13870 50.352 284 123 5 12 283 10 287 9.49e-92 274
MsG0880047493.01.T01 AT5G13870 50.352 284 123 5 12 283 10 287 9.49e-92 274
MsG0880047493.01.T01 AT5G13870 50.352 284 123 5 12 283 10 287 9.49e-92 274
MsG0880047493.01.T01 AT4G03210 53.498 243 109 2 44 283 43 284 3.83e-91 272
MsG0880047493.01.T01 AT4G28850 49.225 258 124 3 34 286 35 290 2.28e-90 270
MsG0880047493.01.T01 AT4G37800 45.833 288 148 5 2 285 8 291 4.79e-90 270
MsG0880047493.01.T01 AT2G06850 51.779 253 114 3 35 283 42 290 1.43e-87 263
MsG0880047493.01.T01 AT4G03210 53.165 237 104 3 50 283 24 256 1.59e-86 259
MsG0880047493.01.T01 AT2G14620 45.139 288 147 4 8 285 10 296 8.97e-85 256
MsG0880047493.01.T01 AT1G11545 43.836 292 146 6 6 285 16 301 2.83e-83 253
MsG0880047493.01.T01 AT2G06850 53.043 230 100 3 58 283 5 230 3.66e-83 250
MsG0880047493.01.T01 AT4G13090 45.965 285 146 5 5 283 6 288 4.36e-79 242
MsG0880047493.01.T01 AT2G14620 49.565 230 112 3 59 285 18 246 4.03e-77 235
MsG0880047493.01.T01 AT3G25050 43.206 287 149 5 7 283 7 289 1.73e-75 232
MsG0880047493.01.T01 AT2G14620 49.778 225 109 3 64 285 12 235 2.82e-75 230
MsG0880047493.01.T01 AT4G13080 46.800 250 130 3 34 283 45 291 3.02e-74 229
MsG0880047493.01.T01 AT2G36870 40.755 265 140 6 27 283 42 297 1.18e-59 192
MsG0880047493.01.T01 AT1G14720 39.147 258 145 7 36 285 39 292 1.45e-55 182
MsG0880047493.01.T01 AT1G32170 35.395 291 170 8 9 285 9 295 1.85e-54 180
MsG0880047493.01.T01 AT3G44990 41.152 243 128 7 49 283 58 293 4.16e-54 177
MsG0880047493.01.T01 AT1G10550 37.548 261 144 7 39 283 52 309 8.51e-53 175
MsG0880047493.01.T01 AT2G01850 36.822 258 151 7 36 285 39 292 1.31e-51 172
MsG0880047493.01.T01 AT3G48580 38.023 263 141 9 22 283 32 273 8.02e-48 161
MsG0880047493.01.T01 AT4G18990 34.686 271 152 8 39 287 49 316 1.80e-45 157
MsG0880047493.01.T01 AT3G48580 38.326 227 123 7 58 283 4 214 2.69e-42 145
MsG0880047493.01.T01 AT4G18990 35.468 203 113 5 101 287 42 242 3.63e-37 133
MsG0880047493.01.T01 AT3G48580 32.700 263 135 10 22 283 32 253 2.07e-30 115
MsG0880047493.01.T01 AT2G36870 43.885 139 68 3 27 157 42 178 1.09e-29 111

Find 74 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAATCAATATCTTTA+TGG 0.128432 8:-87118059 MsG0880047493.01.T01:CDS
GAGAACAACAATTCTATTTA+TGG 0.140855 8:-87117764 MsG0880047493.01.T01:CDS
AATCTCATTGGCTGCTTCTT+TGG 0.175421 8:+87116789 None:intergenic
TCCATAAAGATATTGATTAT+TGG 0.219272 8:+87118058 None:intergenic
ATTGGCTGCTTCTTTGGATA+TGG 0.238008 8:+87116795 None:intergenic
TGAAATAGACTTTGAATTCT+TGG 0.240382 8:-87117850 MsG0880047493.01.T01:CDS
GACCCTGAGGGAATCGTTTA+AGG 0.250841 8:+87116511 None:intergenic
TTTAATATGTACACATTTCA+TGG 0.293441 8:-87118207 MsG0880047493.01.T01:CDS
TATTGATGGCAGACCAATTA+GGG 0.305687 8:-87116847 MsG0880047493.01.T01:CDS
AAGTTCTTGAATTCCCTAAT+TGG 0.320227 8:+87116834 None:intergenic
GAAATGTGTACATATTAAAA+AGG 0.320813 8:+87118211 None:intergenic
TTCCTAAAAGAAGCAGTAAA+TGG 0.325310 8:+87116693 None:intergenic
CTATTGATGGCAGACCAATT+AGG 0.330217 8:-87116848 MsG0880047493.01.T01:CDS
CAAATCAGAAAAGGCTCAAA+TGG 0.340400 8:-87116572 MsG0880047493.01.T01:CDS
ATGCAAATTAAACTTGTTCC+TGG 0.361969 8:-87118026 MsG0880047493.01.T01:CDS
GAAATAGACTTTGAATTCTT+GGG 0.378927 8:-87117849 MsG0880047493.01.T01:CDS
ATTCCCTCAGGGTCTCCCTT+TGG 0.410581 8:-87116502 MsG0880047493.01.T01:CDS
ACTCTTCTTCTGACAATGCT+TGG 0.416402 8:-87116617 MsG0880047493.01.T01:CDS
GTTCTCTGTCCCCTTTGCCT+AGG 0.418397 8:+87117781 None:intergenic
TTCTCTGTCCCCTTTGCCTA+GGG 0.435604 8:+87117782 None:intergenic
GTCTGTGGAATGCTGATGAT+TGG 0.441709 8:-87116758 MsG0880047493.01.T01:CDS
ACCAAGTCATAAGAATTAAG+AGG 0.450598 8:-87116465 MsG0880047493.01.T01:exon
CTAGACAGAACCTCTGGCTC+TGG 0.460483 8:-87118089 MsG0880047493.01.T01:CDS
ATGTGTACACCCTAGGCAAA+GGG 0.461356 8:-87117791 MsG0880047493.01.T01:CDS
TAGGTATGAAAATCTGTAGT+TGG 0.461780 8:+87117735 None:intergenic
TCCTCTTAATTCTTATGACT+TGG 0.471679 8:+87116464 None:intergenic
AATTAGGGAATTCAAGAACT+TGG 0.476768 8:-87116832 MsG0880047493.01.T01:CDS
GAAACTTACACAACATGTGC+AGG 0.480987 8:+87117696 None:intergenic
AGACTTGAATATAATCTCAT+TGG 0.482257 8:+87116777 None:intergenic
AATGATAAGCAAACGAAAGA+TGG 0.487788 8:+87116389 None:intergenic
ATTGGACAAAACACAACCAT+TGG 0.488431 8:+87116662 None:intergenic
CTTGTTCCTGGAAATTCAGC+TGG 0.496538 8:-87118014 MsG0880047493.01.T01:CDS
ATCAAGATGTTAGTATCACT+TGG 0.496547 8:-87118163 MsG0880047493.01.T01:CDS
TAGATTCTACAAATCAGAAA+AGG 0.498615 8:-87116581 MsG0880047493.01.T01:CDS
TGACCTTAAACGATTCCCTC+AGG 0.499561 8:-87116514 MsG0880047493.01.T01:CDS
TTTGCAAGAAGAAATTCCAT+TGG 0.499781 8:+87116644 None:intergenic
ACATTGGTATGAACTATGTA+AGG 0.504779 8:+87117810 None:intergenic
ACCGTGCCAGCTGAATTTCC+AGG 0.514387 8:+87118008 None:intergenic
TTTAGGAACTTCAAAGCCAA+TGG 0.515491 8:-87116678 MsG0880047493.01.T01:CDS
TTAATTCTTATGACTTGGTA+CGG 0.520476 8:+87116469 None:intergenic
AATGCATAGTTAGAAGCCAT+TGG 0.521943 8:+87118251 None:intergenic
AGCATTGTCAGAAGAAGAGT+TGG 0.525258 8:+87116620 None:intergenic
AGGATTCCAGAGAAAAGAAT+AGG 0.527569 8:+87117716 None:intergenic
TCAAGATGTTAGTATCACTT+GGG 0.531310 8:-87118162 MsG0880047493.01.T01:CDS
ACGTTCAGAAGGGTCATTGT+GGG 0.534482 8:-87117874 MsG0880047493.01.T01:CDS
AAATCAGAAAAGGCTCAAAT+GGG 0.537276 8:-87116571 MsG0880047493.01.T01:CDS
TCTGTGGAATGCTGATGATT+GGG 0.547719 8:-87116757 MsG0880047493.01.T01:CDS
TCCTGGAAATTCAGCTGGCA+CGG 0.548180 8:-87118009 MsG0880047493.01.T01:CDS
CTGTCTCTAGACAGAACCTC+TGG 0.548223 8:-87118095 MsG0880047493.01.T01:CDS
GCATTGCAGTTACGTTCAGA+AGG 0.549452 8:-87117885 MsG0880047493.01.T01:intron
TTTGCCTAGGGTGTACACAT+TGG 0.559431 8:+87117794 None:intergenic
GTGGACTTGTGAAAACAGAT+TGG 0.561998 8:-87116725 MsG0880047493.01.T01:CDS
TACGGACAGTGCATTCCAAA+GGG 0.563184 8:+87116487 None:intergenic
AATGTGTACACCCTAGGCAA+AGG 0.565362 8:-87117792 MsG0880047493.01.T01:CDS
TGAGATTATATTCAAGTCTG+TGG 0.566225 8:-87116773 MsG0880047493.01.T01:CDS
TACAAGTAATAAACTACTAG+AGG 0.585236 8:+87116435 None:intergenic
GTACGGACAGTGCATTCCAA+AGG 0.598915 8:+87116486 None:intergenic
AAATACAATACACTGTCCAA+TGG 0.599326 8:-87118267 MsG0880047493.01.T01:exon
CATACCAATGTGTACACCCT+AGG 0.600781 8:-87117798 MsG0880047493.01.T01:CDS
GACCTTAAACGATTCCCTCA+GGG 0.603618 8:-87116513 MsG0880047493.01.T01:CDS
GATGATTGGGCAACAAGAGG+TGG 0.606066 8:-87116744 MsG0880047493.01.T01:CDS
TTCAAGAACTTGGAGAGTGA+AGG 0.610761 8:-87116822 MsG0880047493.01.T01:CDS
CAAGATGTTAGTATCACTTG+GGG 0.610855 8:-87118161 MsG0880047493.01.T01:CDS
GAATTCTTGGGAAATTTGAG+TGG 0.630242 8:-87117837 MsG0880047493.01.T01:CDS
CATTGCAGTTACGTTCAGAA+GGG 0.632405 8:-87117884 MsG0880047493.01.T01:intron
TACGTTCAGAAGGGTCATTG+TGG 0.637977 8:-87117875 MsG0880047493.01.T01:CDS
GGATTGAAAGCCAGAGCCAG+AGG 0.638116 8:+87118079 None:intergenic
AGATGTTAGTATCACTTGGG+GGG 0.655003 8:-87118159 MsG0880047493.01.T01:CDS
ATTCCAAAGGGAGACCCTGA+GGG 0.664464 8:+87116499 None:intergenic
CATTCCAAAGGGAGACCCTG+AGG 0.667653 8:+87116498 None:intergenic
AGAGGTAAGATTGTGAACAA+TGG 0.680526 8:-87118131 MsG0880047493.01.T01:CDS
GCTGATGATTGGGCAACAAG+AGG 0.682230 8:-87116747 MsG0880047493.01.T01:CDS
TGTGTACACCCTAGGCAAAG+GGG 0.687067 8:-87117790 MsG0880047493.01.T01:CDS
AAGATGTTAGTATCACTTGG+GGG 0.699999 8:-87118160 MsG0880047493.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTAAACATATTAATA+AGG + Chr8:87116700-87116719 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - Chr8:87116704-87116723 MsG0880047493.01.T01:CDS 10.0%
!!! ATTTCAAATTTTAAAAGATT+TGG - Chr8:87117128-87117147 MsG0880047493.01.T01:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - Chr8:87117189-87117208 MsG0880047493.01.T01:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG + Chr8:87117189-87117208 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - Chr8:87117188-87117207 MsG0880047493.01.T01:intron 10.0%
!!! TTTCAAATTTTAAAAGATTT+GGG - Chr8:87117129-87117148 MsG0880047493.01.T01:intron 10.0%
!! ATTTAAATATAATAAGAGAG+TGG - Chr8:87117100-87117119 MsG0880047493.01.T01:intron 15.0%
!! TATTTATCAAAATTAAGGAT+TGG + Chr8:87117426-87117445 None:intergenic 15.0%
!! TGTGGATAAATAAAAATAAA+AGG + Chr8:87116360-87116379 None:intergenic 15.0%
!!! AGATTTTTGAAAATTTTGAT+TGG + Chr8:87117248-87117267 None:intergenic 15.0%
!!! ATTTTCAAAAATTTAAGGAT+TGG + Chr8:87117216-87117235 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - Chr8:87117633-87117652 MsG0880047493.01.T01:intron 15.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - Chr8:87116991-87117010 MsG0880047493.01.T01:intron 15.0%
!! AACAAATTATATGTACCAAT+TGG - Chr8:87117607-87117626 MsG0880047493.01.T01:intron 20.0%
!! GAAATGTGTACATATTAAAA+AGG + Chr8:87116441-87116460 None:intergenic 20.0%
!! TCCAATAATCAATATCTTTA+TGG - Chr8:87116590-87116609 MsG0880047493.01.T01:CDS 20.0%
!! TTTAATATGTACACATTTCA+TGG - Chr8:87116442-87116461 MsG0880047493.01.T01:three_prime_UTR 20.0%
!!! TCCATAAAGATATTGATTAT+TGG + Chr8:87116594-87116613 None:intergenic 20.0%
! AGACTTGAATATAATCTCAT+TGG + Chr8:87117875-87117894 None:intergenic 25.0%
! GAAATAGACTTTGAATTCTT+GGG - Chr8:87116800-87116819 MsG0880047493.01.T01:CDS 25.0%
! GACAATGCATAATATATACA+AGG + Chr8:87117539-87117558 None:intergenic 25.0%
! GAGAACAACAATTCTATTTA+TGG - Chr8:87116885-87116904 MsG0880047493.01.T01:intron 25.0%
! TACAAGTAATAAACTACTAG+AGG + Chr8:87118217-87118236 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - Chr8:87118068-87118087 MsG0880047493.01.T01:CDS 25.0%
! TGAAATAGACTTTGAATTCT+TGG - Chr8:87116799-87116818 MsG0880047493.01.T01:CDS 25.0%
! TTACAATTCTTATGTCCAAT+TGG + Chr8:87117625-87117644 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - Chr8:87117788-87117807 MsG0880047493.01.T01:CDS 25.0%
!! TGGGCAAATTTCAAATTTTA+AGG - Chr8:87117148-87117167 MsG0880047493.01.T01:intron 25.0%
!!! AGATCATGCAAGTTTTATTT+TGG + Chr8:87117726-87117745 None:intergenic 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - Chr8:87117158-87117177 MsG0880047493.01.T01:intron 25.0%
!!! TTAATTCTTATGACTTGGTA+CGG + Chr8:87118183-87118202 None:intergenic 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - Chr8:87117157-87117176 MsG0880047493.01.T01:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - Chr8:87117488-87117507 MsG0880047493.01.T01:intron 25.0%
AAATACAATACACTGTCCAA+TGG - Chr8:87116382-87116401 MsG0880047493.01.T01:three_prime_UTR 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - Chr8:87118078-87118097 MsG0880047493.01.T01:CDS 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + Chr8:87117818-87117837 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG + Chr8:87118263-87118282 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - Chr8:87117817-87117836 MsG0880047493.01.T01:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + Chr8:87116842-87116861 None:intergenic 30.0%
ACCAAGTCATAAGAATTAAG+AGG - Chr8:87118184-87118203 MsG0880047493.01.T01:CDS 30.0%
ATCAAGATGTTAGTATCACT+TGG - Chr8:87116486-87116505 MsG0880047493.01.T01:CDS 30.0%
CATAATATATACAAGGTCTG+AGG + Chr8:87117532-87117551 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + Chr8:87116917-87116936 None:intergenic 30.0%
TCAAGATGTTAGTATCACTT+GGG - Chr8:87116487-87116506 MsG0880047493.01.T01:CDS 30.0%
TCCTCTTAATTCTTATGACT+TGG + Chr8:87118188-87118207 None:intergenic 30.0%
TGAGATTATATTCAAGTCTG+TGG - Chr8:87117876-87117895 MsG0880047493.01.T01:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + Chr8:87117959-87117978 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + Chr8:87118008-87118027 None:intergenic 30.0%
! ACAGTGTATTGTATTTTGTG+TGG + Chr8:87116378-87116397 None:intergenic 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - Chr8:87116623-87116642 MsG0880047493.01.T01:CDS 30.0%
! TGACTTATGTGATTTGTCTT+TGG - Chr8:87117766-87117785 MsG0880047493.01.T01:CDS 30.0%
! TTCATACCTATTCTTTTCTC+TGG - Chr8:87116927-87116946 MsG0880047493.01.T01:intron 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - Chr8:87117491-87117510 MsG0880047493.01.T01:intron 30.0%
AAGATGTTAGTATCACTTGG+GGG - Chr8:87116489-87116508 MsG0880047493.01.T01:CDS 35.0%
AATGCATAGTTAGAAGCCAT+TGG + Chr8:87116401-87116420 None:intergenic 35.0%
AGAGGTAAGATTGTGAACAA+TGG - Chr8:87116518-87116537 MsG0880047493.01.T01:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + Chr8:87116936-87116955 None:intergenic 35.0%
ATGCAGAGTATGAAACACAT+AGG - Chr8:87117459-87117478 MsG0880047493.01.T01:intron 35.0%
ATTGGACAAAACACAACCAT+TGG + Chr8:87117990-87118009 None:intergenic 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - Chr8:87118077-87118096 MsG0880047493.01.T01:CDS 35.0%
CAAGATGTTAGTATCACTTG+GGG - Chr8:87116488-87116507 MsG0880047493.01.T01:CDS 35.0%
GAATTCTTGGGAAATTTGAG+TGG - Chr8:87116812-87116831 MsG0880047493.01.T01:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - Chr8:87117971-87117990 MsG0880047493.01.T01:intron 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - Chr8:87117989-87118008 MsG0880047493.01.T01:intron 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - Chr8:87117954-87117973 MsG0880047493.01.T01:intron 35.0%
! TATTGATGGCAGACCAATTA+GGG - Chr8:87117802-87117821 MsG0880047493.01.T01:CDS 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + Chr8:87117755-87117774 None:intergenic 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - Chr8:87117494-87117513 MsG0880047493.01.T01:intron 35.0%
ACTCTTCTTCTGACAATGCT+TGG - Chr8:87118032-87118051 MsG0880047493.01.T01:CDS 40.0%
AGATGTTAGTATCACTTGGG+GGG - Chr8:87116490-87116509 MsG0880047493.01.T01:CDS 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + Chr8:87118032-87118051 None:intergenic 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + Chr8:87117857-87117876 None:intergenic 40.0%
CATTGCAGTTACGTTCAGAA+GGG - Chr8:87116765-87116784 MsG0880047493.01.T01:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + Chr8:87116956-87116975 None:intergenic 40.0%
GTGGACTTGTGAAAACAGAT+TGG - Chr8:87117924-87117943 MsG0880047493.01.T01:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG - Chr8:87117561-87117580 MsG0880047493.01.T01:intron 40.0%
TCTGTGGAATGCTGATGATT+GGG - Chr8:87117892-87117911 MsG0880047493.01.T01:intron 40.0%
TGTCGATATCAACTGAGCTA+AGG - Chr8:87117555-87117574 MsG0880047493.01.T01:intron 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - Chr8:87117827-87117846 MsG0880047493.01.T01:CDS 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + Chr8:87117863-87117882 None:intergenic 40.0%
! CATTTCATGGTAGCTTTTGC+TGG - Chr8:87116455-87116474 MsG0880047493.01.T01:three_prime_UTR 40.0%
! CTATTGATGGCAGACCAATT+AGG - Chr8:87117801-87117820 MsG0880047493.01.T01:CDS 40.0%
!!! AGTATTTTTTTGGTGGTGGC+AGG - Chr8:87117498-87117517 MsG0880047493.01.T01:intron 40.0%
AATGTGTACACCCTAGGCAA+AGG - Chr8:87116857-87116876 MsG0880047493.01.T01:intron 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - Chr8:87116775-87116794 MsG0880047493.01.T01:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG - Chr8:87116858-87116877 MsG0880047493.01.T01:intron 45.0%
CATACCAATGTGTACACCCT+AGG - Chr8:87116851-87116870 MsG0880047493.01.T01:CDS 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - Chr8:87116635-87116654 MsG0880047493.01.T01:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - Chr8:87118136-87118155 MsG0880047493.01.T01:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - Chr8:87116764-87116783 MsG0880047493.01.T01:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG - Chr8:87117891-87117910 MsG0880047493.01.T01:intron 45.0%
TACGGACAGTGCATTCCAAA+GGG + Chr8:87118165-87118184 None:intergenic 45.0%
TACGTTCAGAAGGGTCATTG+TGG - Chr8:87116774-87116793 MsG0880047493.01.T01:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG - Chr8:87118135-87118154 MsG0880047493.01.T01:CDS 45.0%
TTAGTATCACTTGGGGGGAT+GGG - Chr8:87116495-87116514 MsG0880047493.01.T01:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG + Chr8:87116858-87116877 None:intergenic 45.0%
!! ATATTTATTTATCAAAATTA+AGG + Chr8:87117431-87117450 None:intergenic 5.0%
!!! ATTTTTGAAATTTATAAAAA+TGG + Chr8:87117068-87117087 None:intergenic 5.0%
ATTCCAAAGGGAGACCCTGA+GGG + Chr8:87118153-87118172 None:intergenic 50.0%
CTGTCTCTAGACAGAACCTC+TGG - Chr8:87116554-87116573 MsG0880047493.01.T01:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG + Chr8:87118141-87118160 None:intergenic 50.0%
GATGATTGGGCAACAAGAGG+TGG - Chr8:87117905-87117924 MsG0880047493.01.T01:intron 50.0%
GCTGATGATTGGGCAACAAG+AGG - Chr8:87117902-87117921 MsG0880047493.01.T01:intron 50.0%
GTACGGACAGTGCATTCCAA+AGG + Chr8:87118166-87118185 None:intergenic 50.0%
GTTAGTATCACTTGGGGGGA+TGG - Chr8:87116494-87116513 MsG0880047493.01.T01:CDS 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - Chr8:87116640-87116659 MsG0880047493.01.T01:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - Chr8:87116859-87116878 MsG0880047493.01.T01:intron 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + Chr8:87116870-87116889 None:intergenic 50.0%
ACCGTGCCAGCTGAATTTCC+AGG + Chr8:87116644-87116663 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG - Chr8:87118147-87118166 MsG0880047493.01.T01:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG + Chr8:87118154-87118173 None:intergenic 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + Chr8:87116573-87116592 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + Chr8:87116871-87116890 None:intergenic 55.0%
! CTAGACAGAACCTCTGGCTC+TGG - Chr8:87116560-87116579 MsG0880047493.01.T01:CDS 55.0%
ATCACTTGGGGGGATGGGAG+AGG - Chr8:87116500-87116519 MsG0880047493.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 87116313 87118358 87116313 ID=MsG0880047493.01;Name=MsG0880047493.01
Chr8 mRNA 87116313 87118358 87116313 ID=MsG0880047493.01.T01;Parent=MsG0880047493.01;Name=MsG0880047493.01.T01;_AED=0.48;_eAED=0.48;_QI=88|1|1|1|1|1|3|163|289
Chr8 exon 87116313 87116875 87116313 ID=MsG0880047493.01.T01:exon:18043;Parent=MsG0880047493.01.T01
Chr8 exon 87117705 87117898 87117705 ID=MsG0880047493.01.T01:exon:18042;Parent=MsG0880047493.01.T01
Chr8 exon 87117995 87118358 87117995 ID=MsG0880047493.01.T01:exon:18041;Parent=MsG0880047493.01.T01
Chr8 five_prime_UTR 87118271 87118358 87118271 ID=MsG0880047493.01.T01:five_prime_utr;Parent=MsG0880047493.01.T01
Chr8 CDS 87117995 87118270 87117995 ID=MsG0880047493.01.T01:cds;Parent=MsG0880047493.01.T01
Chr8 CDS 87117705 87117898 87117705 ID=MsG0880047493.01.T01:cds;Parent=MsG0880047493.01.T01
Chr8 CDS 87116476 87116875 87116476 ID=MsG0880047493.01.T01:cds;Parent=MsG0880047493.01.T01
Chr8 three_prime_UTR 87116313 87116475 87116313 ID=MsG0880047493.01.T01:three_prime_utr;Parent=MsG0880047493.01.T01
Gene Sequence

>MsG0880047493.01.T01

ATGGCTTCTAACTATGCATTTTTTGTGCATGTCATAACCTTTTTAATATGTACACATTTCATGGTAGCTTTTGCTGGAAACTTGTATCAAGATGTTAGTATCACTTGGGGGGATGGGAGAGGTAAGATTGTGAACAATGGTCAGCTTCTAACTCTGTCTCTAGACAGAACCTCTGGCTCTGGCTTTCAATCCAATAATCAATATCTTTATGGAAAGATTGACATGCAAATTAAACTTGTTCCTGGAAATTCAGCTGGCACGGTCACTGCTTATTATTTACGTTCAGAAGGGTCATTGTGGGATGAAATAGACTTTGAATTCTTGGGAAATTTGAGTGGTGATCCTTACATAGTTCATACCAATGTGTACACCCTAGGCAAAGGGGACAGAGAACAACAATTCTATTTATGGTTTGATCCAACTACAGATTTTCATACCTATTCTTTTCTCTGGAATCCTGCACATGTTGTATTTTCTATTGATGGCAGACCAATTAGGGAATTCAAGAACTTGGAGAGTGAAGGTGTTCCATATCCAAAGAAGCAGCCAATGAGATTATATTCAAGTCTGTGGAATGCTGATGATTGGGCAACAAGAGGTGGACTTGTGAAAACAGATTGGAGTCAAGCTCCATTTACTGCTTCTTTTAGGAACTTCAAAGCCAATGGTTGTGTTTTGTCCAATGGAATTTCTTCTTGCAAATCCAACTCTTCTTCTGACAATGCTTGGTTGTATCAACAGCTAGATTCTACAAATCAGAAAAGGCTCAAATGGGTGCAAAAGAATTACATGATTTACAATTACTGCAATGACCTTAAACGATTCCCTCAGGGTCTCCCTTTGGAATGCACTGTCCGTACCAAGTCATAA

Protein sequence

>MsG0880047493.01.T01

MASNYAFFVHVITFLICTHFMVAFAGNLYQDVSITWGDGRGKIVNNGQLLTLSLDRTSGSGFQSNNQYLYGKIDMQIKLVPGNSAGTVTAYYLRSEGSLWDEIDFEFLGNLSGDPYIVHTNVYTLGKGDREQQFYLWFDPTTDFHTYSFLWNPAHVVFSIDGRPIREFKNLESEGVPYPKKQPMRLYSSLWNADDWATRGGLVKTDWSQAPFTASFRNFKANGCVLSNGISSCKSNSSSDNAWLYQQLDSTNQKRLKWVQKNYMIYNYCNDLKRFPQGLPLECTVRTKS*