AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018205.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018205.01.T01 MTR_4g007220 85.496 524 67 3 476 999 86 600 0.0 941
MsG0480018205.01.T01 MTR_4g007220 92.149 484 30 2 1 484 120 595 0.0 934
MsG0480018205.01.T01 MTR_2g020730 63.689 515 176 6 486 995 67 575 0.0 666
MsG0480018205.01.T01 MTR_2g020730 66.808 473 150 4 16 486 109 576 0.0 657
MsG0480018205.01.T01 MTR_1g090430 58.351 485 195 3 2 484 5 484 0.0 574
MsG0480018205.01.T01 MTR_1g090430 57.143 497 198 4 503 997 4 487 0.0 570
MsG0480018205.01.T01 MTR_8g099865 55.021 478 207 5 11 486 112 583 6.13e-180 535
MsG0480018205.01.T01 MTR_8g099865 54.088 477 211 5 521 995 112 582 7.43e-179 533
MsG0480018205.01.T01 MTR_4g108780 44.798 471 252 4 529 996 108 573 1.81e-134 417
MsG0480018205.01.T01 MTR_4g108780 43.070 469 259 4 19 484 108 571 1.26e-125 394
MsG0480018205.01.T01 MTR_3g037560 42.383 512 273 7 491 996 40 535 1.89e-132 410
MsG0480018205.01.T01 MTR_3g037560 42.348 477 248 8 19 484 73 533 1.41e-123 387
MsG0480018205.01.T01 MTR_4g007360 46.473 241 92 6 505 742 107 313 1.21e-55 196
MsG0480018205.01.T01 MTR_4g007360 45.887 231 91 5 2 232 117 313 2.10e-53 189
MsG0480018205.01.T01 MTR_7g005890 52.349 149 39 4 742 890 1 117 1.50e-36 134
MsG0480018205.01.T01 MTR_7g005890 51.678 149 40 4 232 380 1 117 1.78e-35 130
MsG0480018205.01.T01 MTR_4g007380 61.607 112 27 2 844 955 7 102 6.07e-36 133
MsG0480018205.01.T01 MTR_4g007380 61.607 112 27 2 334 445 7 102 2.36e-35 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018205.01.T01 AT2G03220 48.643 479 230 6 522 994 90 558 6.20e-145 444
MsG0480018205.01.T01 AT2G03220 47.257 474 236 5 17 484 93 558 4.64e-141 434
MsG0480018205.01.T01 AT2G03210 45.070 497 258 6 511 997 79 570 7.76e-139 428
MsG0480018205.01.T01 AT2G03210 44.130 494 261 6 1 484 79 567 4.40e-132 410
MsG0480018205.01.T01 AT2G03210 44.800 500 258 6 511 997 45 539 1.58e-138 426
MsG0480018205.01.T01 AT2G03210 44.064 497 260 6 1 484 45 536 8.75e-132 409
MsG0480018205.01.T01 AT2G03210 44.800 500 258 6 511 997 79 573 2.57e-138 427
MsG0480018205.01.T01 AT2G03210 44.064 497 260 6 1 484 79 570 1.45e-131 409
MsG0480018205.01.T01 AT2G15370 43.579 475 252 6 19 483 61 529 6.11e-132 409
MsG0480018205.01.T01 AT2G15370 41.358 486 267 6 517 990 46 525 7.07e-126 393
MsG0480018205.01.T01 AT2G15350 42.647 476 255 7 19 483 42 510 1.22e-130 405
MsG0480018205.01.T01 AT2G15350 40.792 505 275 8 510 997 17 514 2.27e-127 396
MsG0480018205.01.T01 AT1G14100 42.650 483 248 7 18 484 44 513 4.16e-130 404
MsG0480018205.01.T01 AT1G14100 42.647 476 258 6 528 994 44 513 2.02e-127 397
MsG0480018205.01.T01 AT2G15390 42.857 476 256 7 18 483 30 499 1.60e-129 402
MsG0480018205.01.T01 AT2G15390 41.250 480 266 7 528 997 30 503 9.43e-125 389
MsG0480018205.01.T01 AT2G15390 42.857 476 256 7 18 483 62 531 3.30e-129 402
MsG0480018205.01.T01 AT2G15390 40.557 503 278 8 510 997 39 535 1.81e-125 392
MsG0480018205.01.T01 AT1G14080 43.070 469 251 6 18 476 63 525 8.32e-128 398
MsG0480018205.01.T01 AT1G14080 42.308 468 256 5 528 986 63 525 8.36e-126 393
MsG0480018205.01.T01 AT1G14110 40.466 472 226 6 19 484 46 468 2.23e-115 363
MsG0480018205.01.T01 AT1G14110 40.928 474 221 8 529 994 46 468 3.85e-114 360
MsG0480018205.01.T01 AT1G74420 38.758 467 265 6 508 966 66 519 2.27e-102 331
MsG0480018205.01.T01 AT1G74420 40.351 456 251 7 9 456 77 519 5.59e-101 327
MsG0480018205.01.T01 AT1G74420 39.560 455 254 6 520 966 82 523 1.12e-101 329
MsG0480018205.01.T01 AT1G74420 40.659 455 249 7 10 456 82 523 1.98e-101 328
MsG0480018205.01.T01 AT1G74420 38.758 467 265 6 508 966 104 557 1.43e-101 330
MsG0480018205.01.T01 AT1G74420 40.351 456 251 7 9 456 115 557 3.60e-100 326
MsG0480018205.01.T01 AT1G74420 39.560 455 254 6 520 966 120 561 5.45e-101 328
MsG0480018205.01.T01 AT1G74420 40.659 455 249 7 10 456 120 561 1.26e-100 327

Find 143 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTGCAAATACCTTATT+TGG 0.158644 4:+1541104 MsG0480018205.01.T01:CDS
CAATGTGCAAATACCTTATT+TGG 0.170999 4:+1544949 MsG0480018205.01.T01:CDS
TCTAAATTCTAAGAACATTA+AGG 0.197873 4:+1541072 MsG0480018205.01.T01:CDS
ACTACTTCTTTGTCTACTTT+TGG 0.201160 4:+1542030 MsG0480018205.01.T01:CDS
ACTACTTCTTTGTCTACTTT+TGG 0.220724 4:+1545875 MsG0480018205.01.T01:CDS
TTCACATTCTAAGAGCATTA+AGG 0.237325 4:+1544917 MsG0480018205.01.T01:CDS
TGGACACCGGCTAATGGTTT+AGG 0.237994 4:+1544969 MsG0480018205.01.T01:CDS
TTTAAATTATCACCGTATTC+TGG 0.239005 4:-1541856 None:intergenic
GCTTCTTGTGGAGTTAAAAT+AGG 0.242591 4:-1541697 None:intergenic
ACGAATAAATCAACTTCTTC+AGG 0.252310 4:+1541889 MsG0480018205.01.T01:CDS
TTGCAGCCATGCTAACAATT+TGG 0.262073 4:-1544995 None:intergenic
CTAGATTCATAATCACTTCT+TGG 0.285028 4:-1545556 None:intergenic
GCTAAAGCAAATGAGAAAAT+AGG 0.287882 4:+1541652 MsG0480018205.01.T01:CDS
TAGTCAAGCTCTTATCATTA+AGG 0.290641 4:+1545286 MsG0480018205.01.T01:CDS
TGGACACCGGCTAATGGTTT+AGG 0.295799 4:+1541124 MsG0480018205.01.T01:CDS
TAGTCAAGCTCTTATCATTA+AGG 0.302015 4:+1541441 MsG0480018205.01.T01:CDS
TTGTGGTAATCTTTACCATT+AGG 0.304737 4:-1544879 None:intergenic
CATTAGCCGGTGTCCAAATA+AGG 0.310870 4:-1541117 None:intergenic
CATTAGCCGGTGTCCAAATA+AGG 0.310870 4:-1544962 None:intergenic
GCTAAAGCAGATGAGAAAAT+AGG 0.324523 4:+1545497 MsG0480018205.01.T01:CDS
GGACACCGGCTAATGGTTTA+GGG 0.327747 4:+1544970 MsG0480018205.01.T01:CDS
TAGATTCATAATCACTTCTT+GGG 0.337756 4:-1545555 None:intergenic
CTAAATTCTAAGAACATTAA+GGG 0.340568 4:+1541073 MsG0480018205.01.T01:CDS
TCACATTCTAAGAGCATTAA+GGG 0.355088 4:+1544918 MsG0480018205.01.T01:CDS
CATTTACATGAGGAAATGTA+TGG 0.361440 4:+1542224 MsG0480018205.01.T01:CDS
GTGTGATGCTCGTAAGATTC+AGG 0.374202 4:+1541200 MsG0480018205.01.T01:CDS
CTTCTTCTTTCATTTATATG+AGG 0.374984 4:+1546059 MsG0480018205.01.T01:CDS
ATGAATAAATCAACTGTTAC+CGG 0.383122 4:+1545734 MsG0480018205.01.T01:CDS
TTGTGGTAATCCTTACCATT+AGG 0.383940 4:-1541034 None:intergenic
GGATATGTTGCTCAAGGCTT+GGG 0.386546 4:+1542051 MsG0480018205.01.T01:CDS
GGATATGTTGCTCAAGGCTT+GGG 0.386546 4:+1545896 MsG0480018205.01.T01:CDS
CTTATTTGGACACCGGCTAA+TGG 0.391000 4:+1541118 MsG0480018205.01.T01:CDS
CTTATTTGGACACCGGCTAA+TGG 0.391000 4:+1544963 MsG0480018205.01.T01:CDS
CATTTATATGAGGAAATGTA+AGG 0.395725 4:+1546069 MsG0480018205.01.T01:CDS
CATAGAAAGTGCGGACCTAA+TGG 0.405306 4:+1544864 MsG0480018205.01.T01:CDS
TTCAATATTAAATACGAAGA+AGG 0.409361 4:-1544819 None:intergenic
TTGCAGCCATGCTAACCATT+TGG 0.409888 4:-1541150 None:intergenic
GTGTGATGCTTGTAAGATTC+GGG 0.410123 4:+1545045 MsG0480018205.01.T01:CDS
AAATTTCTATCAAACACATT+TGG 0.415566 4:+1541630 MsG0480018205.01.T01:CDS
GGAAAAGGTAGCGTCCTAAA+TGG 0.422451 4:-1541576 None:intergenic
GATTGAACACTCTTATTTGA+AGG 0.425193 4:-1541675 None:intergenic
CTCAAGGCTTGGGAAATTTG+AGG 0.429093 4:+1542061 MsG0480018205.01.T01:CDS
CTCAAGGCTTGGGAAATTTG+AGG 0.429093 4:+1545906 MsG0480018205.01.T01:CDS
TTCGATATTAAATATGAAGA+AGG 0.430936 4:-1540974 None:intergenic
TTAGCTTCTGAATTTGATGA+TGG 0.432444 4:+1540896 MsG0480018205.01.T01:CDS
TGGATATGTTGCTCAAGGCT+TGG 0.436642 4:+1542050 MsG0480018205.01.T01:CDS
TGGATATGTTGCTCAAGGCT+TGG 0.436642 4:+1545895 MsG0480018205.01.T01:CDS
CATAGAAGGTGTGGACCTAA+TGG 0.437830 4:+1541019 MsG0480018205.01.T01:CDS
CGTGTGATGCTTGTAAGATT+CGG 0.439098 4:+1545044 MsG0480018205.01.T01:CDS
CGAATAAATCAACTTCTTCA+GGG 0.450484 4:+1541890 MsG0480018205.01.T01:CDS
ATGTAGAGTTGGATCATTTG+TGG 0.462453 4:-1540831 None:intergenic
ATGTAGAGTTGGATCATTTG+TGG 0.462453 4:-1544676 None:intergenic
GCGTCTTTATATCCAGAATA+CGG 0.468536 4:+1541844 MsG0480018205.01.T01:CDS
AAATATGAAGAAGGTTTATG+AGG 0.471182 4:-1540965 None:intergenic
GCTTGGGAAATTTGAGGCCA+TGG 0.471407 4:+1542067 MsG0480018205.01.T01:CDS
GCTTGGGAAATTTGAGGCCA+TGG 0.471407 4:+1545912 MsG0480018205.01.T01:CDS
AGACCAACAGCTACAACAAC+AGG 0.472780 4:+1544499 MsG0480018205.01.T01:CDS
TTTCCACTACAATAATGCTT+AGG 0.473683 4:-1546019 None:intergenic
CTTCATTCGAAGGGTGGAAA+AGG 0.474520 4:-1545436 None:intergenic
TTTAAATTCTCACCGTATTG+TGG 0.477617 4:-1545701 None:intergenic
TGGTAGTAAATTATTGTGAA+TGG 0.479933 4:-1545591 None:intergenic
CTTCATTCGAAGGGTGGAAA+AGG 0.480370 4:-1541591 None:intergenic
AAACCTGTTGTTGTAGCTGT+TGG 0.485669 4:-1544502 None:intergenic
TAAGCATAATATGAAGGCTT+GGG 0.491354 4:+1541969 MsG0480018205.01.T01:CDS
CCACTACAATAATGCTTAGG+AGG 0.497872 4:-1546016 None:intergenic
ATGATACATCATGCATAAGC+AGG 0.499784 4:+1544757 MsG0480018205.01.T01:CDS
GAGAAATCTCTTTCACAAGC+TGG 0.499901 4:-1542126 None:intergenic
CTTGTCAAATTCAAGGTACA+GGG 0.500668 4:+1544442 MsG0480018205.01.T01:intron
TTTCCACTACAGTAATGCTT+AGG 0.503251 4:-1542174 None:intergenic
ACTAAGTTTATCTGATGTGT+TGG 0.503513 4:+1542005 MsG0480018205.01.T01:CDS
CCACTACAGTAATGCTTAGG+AGG 0.503948 4:-1542171 None:intergenic
GATTGAACACTCTTACTTGA+AGG 0.504657 4:-1545520 None:intergenic
AAATTCATAATTGCTTCTTG+TGG 0.505370 4:-1541709 None:intergenic
GAATATTTCTCATGCTGTTG+TGG 0.505412 4:-1541051 None:intergenic
TAATGGTTTAGGAAACCAAA+TGG 0.508879 4:+1541135 MsG0480018205.01.T01:CDS
TGGATTGTAGTATGTAGAGT+TGG 0.522535 4:-1544687 None:intergenic
AAATTTCTATCAAGCACACT+TGG 0.522645 4:+1545475 MsG0480018205.01.T01:CDS
ACTTCTTGGGGAGTTGAAAG+AGG 0.524904 4:-1545542 None:intergenic
ATTAGCTTGTATAGAAGCCA+TGG 0.525397 4:-1545929 None:intergenic
TGGTTTCCTAAACCATTAGC+CGG 0.528205 4:-1541130 None:intergenic
TGGTTCCCTAAACCATTAGC+CGG 0.530224 4:-1544975 None:intergenic
AGGGAACCAAATTGTTAGCA+TGG 0.531204 4:+1544989 MsG0480018205.01.T01:CDS
ACATCTTTACATCCACAATA+CGG 0.531771 4:+1545689 MsG0480018205.01.T01:CDS
AATTTACTACCAAAAGTACT+TGG 0.532510 4:+1545602 MsG0480018205.01.T01:CDS
ACTAAGTTTATCTGATGTGT+TGG 0.532530 4:+1545850 MsG0480018205.01.T01:CDS
AGTCTCCACGCTTCATTCGA+AGG 0.532757 4:-1541601 None:intergenic
ATAAGCATAATATGAAGGCT+TGG 0.534416 4:+1541968 MsG0480018205.01.T01:CDS
ATGATGGCTCATGCATAAGC+AGG 0.535003 4:+1540912 MsG0480018205.01.T01:CDS
GAGAACTCTCTTTCACAAGC+TGG 0.535540 4:-1545971 None:intergenic
ATTATCTTGTATAGAAGCCA+TGG 0.536564 4:-1542084 None:intergenic
AGTCTCCATGCTTCATTCGA+AGG 0.537400 4:-1545446 None:intergenic
ATGAACCTCTATCATTTCCC+CGG 0.541435 4:-1545753 None:intergenic
ATTTCTCAGGTAAATTTGGT+CGG 0.541767 4:-1541402 None:intergenic
ATTTCTCAGGTAAATTTGGT+CGG 0.541767 4:-1545247 None:intergenic
ATATCAAAGCATGATAAAGA+AGG 0.544694 4:+1545163 MsG0480018205.01.T01:CDS
TCCACCCTTCGAATGAAGCA+TGG 0.547667 4:+1545441 MsG0480018205.01.T01:CDS
TCCATGCTTCATTCGAAGGG+TGG 0.548557 4:-1545442 None:intergenic
TGATAATAAGCATAATATGA+AGG 0.549269 4:+1541963 MsG0480018205.01.T01:CDS
CCTCCTAAGCATTATTGTAG+TGG 0.552348 4:+1546016 MsG0480018205.01.T01:CDS
GTTTATGAGATGAAGCTTTG+CGG 0.553212 4:-1544797 None:intergenic
GTCTCCACGCTTCATTCGAA+GGG 0.553860 4:-1541600 None:intergenic
GTCTCCATGCTTCATTCGAA+GGG 0.553860 4:-1545445 None:intergenic
CCTCCTAAGCATTACTGTAG+TGG 0.554289 4:+1542171 MsG0480018205.01.T01:CDS
AGATTGAGAAATAGCGATGA+TGG 0.554913 4:-1545218 None:intergenic
TGGATCGGAGTATGTAGAGT+TGG 0.556752 4:-1540842 None:intergenic
CTTCTTCTTTCATTTACATG+AGG 0.557175 4:+1542214 MsG0480018205.01.T01:CDS
AGCTAACAATAATTCAGAAG+TGG 0.559572 4:+1545190 MsG0480018205.01.T01:CDS
AGGAAACCAAATGGTTAGCA+TGG 0.559741 4:+1541144 MsG0480018205.01.T01:CDS
TGAATAAATCAACTGTTACC+GGG 0.562441 4:+1545735 MsG0480018205.01.T01:CDS
CGAGCATCACACGGTTTGTG+AGG 0.563260 4:-1541189 None:intergenic
CAAGCATCACACGGTTTGTG+AGG 0.572770 4:-1545034 None:intergenic
TGTTACCGGGGAAATGATAG+AGG 0.573862 4:+1545748 MsG0480018205.01.T01:CDS
ATATCAAAGTTTGATAGAGA+AGG 0.577197 4:+1541318 MsG0480018205.01.T01:CDS
CAAATACCTTATTTGGACAC+CGG 0.583111 4:+1544956 MsG0480018205.01.T01:CDS
ATAAGCATAATATGAAAGCA+TGG 0.589938 4:+1545813 MsG0480018205.01.T01:CDS
GAATAAATCAACTGTTACCG+GGG 0.593150 4:+1545736 MsG0480018205.01.T01:CDS
TCCACGCTTCATTCGAAGGG+TGG 0.594457 4:-1541597 None:intergenic
AAAGGTGTCATGAAAAGAGA+AGG 0.597269 4:-1545347 None:intergenic
AAGGTGTGGACCTAATGGTA+AGG 0.597661 4:+1541024 MsG0480018205.01.T01:CDS
AATGGTGTCATGAAAAGAGA+AGG 0.598156 4:-1541502 None:intergenic
AATGCTACTACAACAACTGA+AGG 0.600621 4:+1544475 MsG0480018205.01.T01:CDS
GAAGAAATTCATAGAAAGTG+CGG 0.601314 4:+1544855 MsG0480018205.01.T01:CDS
TACTACCAAAAGTACTTGGT+AGG 0.604644 4:+1545606 MsG0480018205.01.T01:CDS
TCTGATTGCAAAATTAACAA+AGG 0.607879 4:-1541466 None:intergenic
TCTGATTGCAAAATTAACAA+AGG 0.607879 4:-1545311 None:intergenic
AGATTCATAATCACTTCTTG+GGG 0.608639 4:-1545554 None:intergenic
CGAATCTTACAAGCATCACA+CGG 0.610389 4:-1545043 None:intergenic
CAAATACCTTATTTGGACAC+CGG 0.613150 4:+1541111 MsG0480018205.01.T01:CDS
TTGTGAAAGAGATTTCTCAA+TGG 0.614474 4:+1542131 MsG0480018205.01.T01:CDS
AATGTTCGTTGAAAAGGACA+CGG 0.628500 4:+1541546 MsG0480018205.01.T01:CDS
TCCACCCTTCGAATGAAGCG+TGG 0.629725 4:+1541596 MsG0480018205.01.T01:CDS
TTAGGAGGAGCATGATAACA+AGG 0.634688 4:-1546001 None:intergenic
AGATTGAGAAATAATGATGA+TGG 0.636757 4:-1541373 None:intergenic
TTGTGAAAGAGAGTTCTCAA+TGG 0.648650 4:+1545976 MsG0480018205.01.T01:CDS
GAATAAATCAACTTCTTCAG+GGG 0.654370 4:+1541891 MsG0480018205.01.T01:CDS
TTAGGAGGAGCATGATAACA+TGG 0.658710 4:-1542156 None:intergenic
TGAATCTTACGAGCATCACA+CGG 0.659189 4:-1541198 None:intergenic
ATAGAAGTTCATCAACCAAG+TGG 0.661605 4:+1541919 MsG0480018205.01.T01:CDS
TTGTCAAATTCAAGGTACAG+GGG 0.685517 4:+1544443 MsG0480018205.01.T01:intron
ATAGAGGTTCATCAACCAAG+TGG 0.703504 4:+1545764 MsG0480018205.01.T01:CDS
AGATTCAGGAAAGACAAACA+AGG 0.727705 4:+1541214 MsG0480018205.01.T01:CDS
AGATTCGGGAAAGACAAACA+AGG 0.740401 4:+1545059 MsG0480018205.01.T01:CDS
TATTTAATATTGAAACTACG+CGG 0.743428 4:+1544828 MsG0480018205.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTTTAATTATTCTAT+AGG - Chr4:1544348-1544367 None:intergenic 10.0%
!! AAAAATTATCAAATAGTTCA+AGG + Chr4:1544321-1544340 MsG0480018205.01.T01:intron 15.0%
!! AAACTTTGATTAAATAAATG+TGG - Chr4:1542781-1542800 None:intergenic 15.0%
!! TTAAAAAGTTATACTATGTT+TGG - Chr4:1542602-1542621 None:intergenic 15.0%
!!! ATCAAGATTTTTTTAAAAAG+AGG - Chr4:1544579-1544598 None:intergenic 15.0%
!!! ATTAAGATAATAGTAAGTTT+TGG - Chr4:1544419-1544438 None:intergenic 15.0%
!!! TTTATTAAGTCTTGTATTTT+TGG - Chr4:1543795-1543814 None:intergenic 15.0%
!! AAAAAATCCAATAATTGAGA+TGG - Chr4:1543671-1543690 None:intergenic 20.0%
!! AAAAATCCAATAATTGAGAT+GGG - Chr4:1543670-1543689 None:intergenic 20.0%
!! AAAAATTTCTCAGGTAAATT+TGG - Chr4:1541409-1541428 None:intergenic 20.0%
!! AAATTTCTATCAAACACATT+TGG + Chr4:1541630-1541649 MsG0480018205.01.T01:CDS 20.0%
!! ACTATGAAAAAATTCATAGA+AGG + Chr4:1541005-1541024 MsG0480018205.01.T01:CDS 20.0%
!! ACTATTATATTGTTAAAACG+AGG - Chr4:1542511-1542530 None:intergenic 20.0%
!! ATAAACACAATATAAGCAAT+GGG - Chr4:1542907-1542926 None:intergenic 20.0%
!! ATTCAATCAATCATGATTAA+TGG - Chr4:1542553-1542572 None:intergenic 20.0%
!! TAAAACAAAAAGTTAACGAT+AGG + Chr4:1543634-1543653 MsG0480018205.01.T01:intron 20.0%
!! TAATTATAGAAAAGGACAAT+GGG - Chr4:1543771-1543790 None:intergenic 20.0%
!! TACCTTGAATTGAAAAAAAA+AGG - Chr4:1543259-1543278 None:intergenic 20.0%
!! TATAAACACAATATAAGCAA+TGG - Chr4:1542908-1542927 None:intergenic 20.0%
!! TATTAGTTATTGTACTTACA+AGG + Chr4:1543187-1543206 MsG0480018205.01.T01:intron 20.0%
!! TATTTAATATTGAAACTACG+CGG + Chr4:1544828-1544847 MsG0480018205.01.T01:CDS 20.0%
!! TATTTCTTTAAGCTATAAAG+CGG - Chr4:1543221-1543240 None:intergenic 20.0%
!! TGATAATAAGCATAATATGA+AGG + Chr4:1541963-1541982 MsG0480018205.01.T01:CDS 20.0%
!! TTCGATATTAAATATGAAGA+AGG - Chr4:1540977-1540996 None:intergenic 20.0%
!!! CTAAATTCTAAGAACATTAA+GGG + Chr4:1541073-1541092 MsG0480018205.01.T01:CDS 20.0%
!!! TCAAAGTTTACTTAATGTTT+TGG + Chr4:1542792-1542811 MsG0480018205.01.T01:intron 20.0%
!!! TCTAAATTCTAAGAACATTA+AGG + Chr4:1541072-1541091 MsG0480018205.01.T01:CDS 20.0%
!!! TTCCTTTTTTTTTCAATTCA+AGG + Chr4:1543254-1543273 MsG0480018205.01.T01:intron 20.0%
!!! TTTTTGGCTAATTATAGAAA+AGG - Chr4:1543779-1543798 None:intergenic 20.0%
!!! TTTTTTTTCAATTCAAGGTA+TGG + Chr4:1543259-1543278 MsG0480018205.01.T01:intron 20.0%
! AAAAATTCATTGTCAACTTC+TGG + Chr4:1545629-1545648 MsG0480018205.01.T01:CDS 25.0%
! AAATAATGTGAAGAAGAGTT+TGG - Chr4:1543823-1543842 None:intergenic 25.0%
! AAATATGAAGAAGGTTTATG+AGG - Chr4:1540968-1540987 None:intergenic 25.0%
! AAATTCATAATTGCTTCTTG+TGG - Chr4:1541712-1541731 None:intergenic 25.0%
! AACTAGTTAGAGATGTTTAA+TGG + Chr4:1542281-1542300 MsG0480018205.01.T01:intron 25.0%
! AAGTTAACAATGATAACAAC+AGG - Chr4:1543996-1544015 None:intergenic 25.0%
! AATTAGAAGTAGAACAACTA+AGG + Chr4:1543347-1543366 MsG0480018205.01.T01:intron 25.0%
! ACTAGTTAGAGATGTTTAAT+GGG + Chr4:1542282-1542301 MsG0480018205.01.T01:intron 25.0%
! AGATTGAGAAATAATGATGA+TGG - Chr4:1541376-1541395 None:intergenic 25.0%
! ATAAGCATAATATGAAAGCA+TGG + Chr4:1545813-1545832 MsG0480018205.01.T01:CDS 25.0%
! ATATCAAAGCATGATAAAGA+AGG + Chr4:1545163-1545182 MsG0480018205.01.T01:CDS 25.0%
! ATATCAAAGTTTGATAGAGA+AGG + Chr4:1541318-1541337 MsG0480018205.01.T01:CDS 25.0%
! ATGAATAAATCAACTGTTAC+CGG + Chr4:1545734-1545753 MsG0480018205.01.T01:CDS 25.0%
! CAATCATGATTAATGGTTAT+AGG - Chr4:1542546-1542565 None:intergenic 25.0%
! CATTTATATGAGGAAATGTA+AGG + Chr4:1546069-1546088 MsG0480018205.01.T01:CDS 25.0%
! CTAATTATAGAAAAGGACAA+TGG - Chr4:1543772-1543791 None:intergenic 25.0%
! CTTCTTCTTTCATTTATATG+AGG + Chr4:1546059-1546078 MsG0480018205.01.T01:CDS 25.0%
! CTTTAATAATACCATGTCAA+AGG + Chr4:1544172-1544191 MsG0480018205.01.T01:intron 25.0%
! TAATGTACTTGTCAAATTCA+AGG + Chr4:1544435-1544454 MsG0480018205.01.T01:intron 25.0%
! TAGATTCATAATCACTTCTT+GGG - Chr4:1545558-1545577 None:intergenic 25.0%
! TCAAAGGAATTTATTGTGTT+TGG + Chr4:1543317-1543336 MsG0480018205.01.T01:intron 25.0%
! TCTGATTGCAAAATTAACAA+AGG - Chr4:1541469-1541488 None:intergenic 25.0%
! TGAAAAAATGTTCGTTGAAA+AGG + Chr4:1541540-1541559 MsG0480018205.01.T01:CDS 25.0%
! TGGTAGTAAATTATTGTGAA+TGG - Chr4:1545594-1545613 None:intergenic 25.0%
! TTTAAATTATCACCGTATTC+TGG - Chr4:1541859-1541878 None:intergenic 25.0%
!! AAATTTTTGTCATGCTTTTG+TGG - Chr4:1544899-1544918 None:intergenic 25.0%
!! AACCAAGTTGAATTCAAAAA+CGG - Chr4:1541253-1541272 None:intergenic 25.0%
!! AACCAAGTTGAATTCAAAAA+TGG - Chr4:1541253-1541272 None:intergenic 25.0%
!! AAGCAGAAATCTTATTTGAT+AGG - Chr4:1542932-1542951 None:intergenic 25.0%
!! ACATGATTTTCATTCCAAAA+AGG - Chr4:1541292-1541311 None:intergenic 25.0%
!! GAAGAAGCAAAATCTTTTAT+AGG - Chr4:1542201-1542220 None:intergenic 25.0%
!! GAAGAAGCAAAATCTTTTAT+TGG - Chr4:1542201-1542220 None:intergenic 25.0%
!! GCAATTTTTCTTTGTCATTA+TGG - Chr4:1540865-1540884 None:intergenic 25.0%
!! TTTTCTTTGTCATTATGGAT+CGG - Chr4:1540860-1540879 None:intergenic 25.0%
!! TTTTTCATATCAAGTACGTT+TGG - Chr4:1541769-1541788 None:intergenic 25.0%
!!! AAATGTAAGGATTTTTGGTT+TGG + Chr4:1546082-1546101 MsG0480018205.01.T01:CDS 25.0%
!!! AATTTACTACCAAAAGTACT+TGG + Chr4:1545602-1545621 MsG0480018205.01.T01:CDS 25.0%
!!! ATCTTTTAGTTAGTTTGCTT+GGG + Chr4:1542315-1542334 MsG0480018205.01.T01:intron 25.0%
!!! CCAATATAATGTTTTGGTTT+GGG + Chr4:1542852-1542871 MsG0480018205.01.T01:intron 25.0%
!!! CTTAATGTTTTGGTTTTATG+AGG + Chr4:1542802-1542821 MsG0480018205.01.T01:intron 25.0%
!!! GTTTTAAAATTCCAAAAGCA+TGG - Chr4:1543417-1543436 None:intergenic 25.0%
!!! TATCTTTTAGTTAGTTTGCT+TGG + Chr4:1542314-1542333 MsG0480018205.01.T01:intron 25.0%
!!! TCCAATATAATGTTTTGGTT+TGG + Chr4:1542851-1542870 MsG0480018205.01.T01:intron 25.0%
AAACTCTTCTCAATATACCA+TGG + Chr4:1543887-1543906 MsG0480018205.01.T01:intron 30.0%
AAAGAATGTTGTGAATCTCT+TGG - Chr4:1543952-1543971 None:intergenic 30.0%
AAATTTCTATCAAGCACACT+TGG + Chr4:1545475-1545494 MsG0480018205.01.T01:CDS 30.0%
AATCTTCGTTGAAAAAGACA+CGG + Chr4:1545391-1545410 MsG0480018205.01.T01:CDS 30.0%
ACATAGTACTACAACAGATT+TGG - Chr4:1544261-1544280 None:intergenic 30.0%
ACATCTTTACATCCACAATA+CGG + Chr4:1545689-1545708 MsG0480018205.01.T01:CDS 30.0%
ACGAATAAATCAACTTCTTC+AGG + Chr4:1541889-1541908 MsG0480018205.01.T01:CDS 30.0%
ACTAAGTTTATCTGATGTGT+TGG + Chr4:1542005-1542024 MsG0480018205.01.T01:CDS 30.0%
AGAGTCCATAAAATTTCAGA+TGG + Chr4:1544131-1544150 MsG0480018205.01.T01:intron 30.0%
AGATTCATAATCACTTCTTG+GGG - Chr4:1545557-1545576 None:intergenic 30.0%
AGCTAACAATAATTCAGAAG+TGG + Chr4:1545190-1545209 MsG0480018205.01.T01:CDS 30.0%
ATAAGCATAATATGAAGGCT+TGG + Chr4:1541968-1541987 MsG0480018205.01.T01:CDS 30.0%
ATAGTTACATACCTTTGACA+TGG - Chr4:1544186-1544205 None:intergenic 30.0%
ATTACAAATGTCACAACCAA+TGG + Chr4:1544104-1544123 MsG0480018205.01.T01:intron 30.0%
ATTATCTTGTATAGAAGCCA+TGG - Chr4:1542087-1542106 None:intergenic 30.0%
ATTGTGTCATCGCATTATAT+AGG - Chr4:1543600-1543619 None:intergenic 30.0%
ATTTCTCAGGTAAATTTGGT+CGG - Chr4:1541405-1541424 None:intergenic 30.0%
CAAAAACAAAGCGATTATGA+AGG + Chr4:1541810-1541829 MsG0480018205.01.T01:CDS 30.0%
CAAAAACAAGACGATTATGA+AGG + Chr4:1545655-1545674 MsG0480018205.01.T01:CDS 30.0%
CAAAGTGCAAATACCTTATT+TGG + Chr4:1541104-1541123 MsG0480018205.01.T01:CDS 30.0%
CAATGTGCAAATACCTTATT+TGG + Chr4:1544949-1544968 MsG0480018205.01.T01:CDS 30.0%
CATTTACATGAGGAAATGTA+TGG + Chr4:1542224-1542243 MsG0480018205.01.T01:CDS 30.0%
CCCAAACCAAAACATTATAT+TGG - Chr4:1542855-1542874 None:intergenic 30.0%
CGAATAAATCAACTTCTTCA+GGG + Chr4:1541890-1541909 MsG0480018205.01.T01:CDS 30.0%
CTAGATTCATAATCACTTCT+TGG - Chr4:1545559-1545578 None:intergenic 30.0%
CTTCTTCTTTCATTTACATG+AGG + Chr4:1542214-1542233 MsG0480018205.01.T01:CDS 30.0%
GAAAAAATTCATAGAAGGTG+TGG + Chr4:1541010-1541029 MsG0480018205.01.T01:CDS 30.0%
GAAGAAATTCATAGAAAGTG+CGG + Chr4:1544855-1544874 MsG0480018205.01.T01:CDS 30.0%
GAATAAATCAACTTCTTCAG+GGG + Chr4:1541891-1541910 MsG0480018205.01.T01:CDS 30.0%
GACAAAGAAAAATTGCTTGA+TGG + Chr4:1540869-1540888 MsG0480018205.01.T01:CDS 30.0%
GCTAAAGCAAATGAGAAAAT+AGG + Chr4:1541652-1541671 MsG0480018205.01.T01:CDS 30.0%
TAAGCATAATATGAAGGCTT+GGG + Chr4:1541969-1541988 MsG0480018205.01.T01:CDS 30.0%
TAATGGTTTAGGAAACCAAA+TGG + Chr4:1541135-1541154 MsG0480018205.01.T01:CDS 30.0%
TAGTCAAGCTCTTATCATTA+AGG + Chr4:1541441-1541460 MsG0480018205.01.T01:CDS 30.0%
TCAAGTTCTTTGCTGAAAAA+TGG - Chr4:1541523-1541542 None:intergenic 30.0%
TCACAGTGAAAAAATTTCTC+AGG - Chr4:1541418-1541437 None:intergenic 30.0%
TGAATAAATCAACTGTTACC+GGG + Chr4:1545735-1545754 MsG0480018205.01.T01:CDS 30.0%
TTAGCTTCTGAATTTGATGA+TGG + Chr4:1540896-1540915 MsG0480018205.01.T01:CDS 30.0%
TTGTGAAAGAGATTTCTCAA+TGG + Chr4:1542131-1542150 MsG0480018205.01.T01:CDS 30.0%
TTGTGGTAATCTTTACCATT+AGG - Chr4:1544882-1544901 None:intergenic 30.0%
TTTAAATTCTCACCGTATTG+TGG - Chr4:1545704-1545723 None:intergenic 30.0%
TTTCCACTACAATAATGCTT+AGG - Chr4:1546022-1546041 None:intergenic 30.0%
! ACTACTTCTTTGTCTACTTT+TGG + Chr4:1542030-1542049 MsG0480018205.01.T01:CDS 30.0%
! ATGTCAAAGGTATGTAACTA+TGG + Chr4:1544185-1544204 MsG0480018205.01.T01:intron 30.0%
! GATTGAACACTCTTATTTGA+AGG - Chr4:1541678-1541697 None:intergenic 30.0%
! TCAAAACATCACATTTTCCA+TGG + Chr4:1543710-1543729 MsG0480018205.01.T01:intron 30.0%
! TGAGGAAATGTAAGGATTTT+TGG + Chr4:1546077-1546096 MsG0480018205.01.T01:CDS 30.0%
! TGAGGAAATGTATGGATTTT+TGG + Chr4:1542232-1542251 MsG0480018205.01.T01:CDS 30.0%
! TTTTTCCTACCAAGTACTTT+TGG - Chr4:1545614-1545633 None:intergenic 30.0%
!! TCACATTCTAAGAGCATTAA+GGG + Chr4:1544918-1544937 MsG0480018205.01.T01:CDS 30.0%
!! TTCACATTCTAAGAGCATTA+AGG + Chr4:1544917-1544936 MsG0480018205.01.T01:CDS 30.0%
!!! AAATGTATGGATTTTTGGTC+AGG + Chr4:1542237-1542256 MsG0480018205.01.T01:CDS 30.0%
!!! AGCCATTTTTGAATTCAACT+TGG + Chr4:1545093-1545112 MsG0480018205.01.T01:CDS 30.0%
!!! GAGAAATTTTTTCACTGTGA+CGG + Chr4:1541418-1541437 MsG0480018205.01.T01:CDS 30.0%
!!! TAGTCTGTTTTGATCTTTTG+TGG + Chr4:1543117-1543136 MsG0480018205.01.T01:intron 30.0%
!!! TTTTTGGTTTGGTGTAAAGT+TGG + Chr4:1546093-1546112 MsG0480018205.01.T01:CDS 30.0%
AAAAGTTAACGATAGGTAGC+AGG + Chr4:1543641-1543660 MsG0480018205.01.T01:intron 35.0%
AATGCTACTACAACAACTGA+AGG + Chr4:1544475-1544494 MsG0480018205.01.T01:CDS 35.0%
AATGTTCGTTGAAAAGGACA+CGG + Chr4:1541546-1541565 MsG0480018205.01.T01:CDS 35.0%
ACTTGTCAAATTCAAGGTAC+AGG + Chr4:1544441-1544460 MsG0480018205.01.T01:intron 35.0%
AGATTCAGGAAAGACAAACA+AGG + Chr4:1541214-1541233 MsG0480018205.01.T01:CDS 35.0%
AGATTGAGAAATAGCGATGA+TGG - Chr4:1545221-1545240 None:intergenic 35.0%
AGGTAACCCATCTCAATTAT+TGG + Chr4:1543661-1543680 MsG0480018205.01.T01:intron 35.0%
ATAGAAGTTCATCAACCAAG+TGG + Chr4:1541919-1541938 MsG0480018205.01.T01:CDS 35.0%
ATGATACATCATGCATAAGC+AGG + Chr4:1544757-1544776 MsG0480018205.01.T01:CDS 35.0%
ATGTAGAGTTGGATCATTTG+TGG - Chr4:1540834-1540853 None:intergenic 35.0%
CTCACGCAAGTGTAAAAAAA+CGG - Chr4:1543086-1543105 None:intergenic 35.0%
CTTGTCAAATTCAAGGTACA+GGG + Chr4:1544442-1544461 MsG0480018205.01.T01:intron 35.0%
GAATAAATCAACTGTTACCG+GGG + Chr4:1545736-1545755 MsG0480018205.01.T01:CDS 35.0%
GAATATTTCTCATGCTGTTG+TGG - Chr4:1541054-1541073 None:intergenic 35.0%
GATTGAACACTCTTACTTGA+AGG - Chr4:1545523-1545542 None:intergenic 35.0%
GATTTCCGGTTTACTAACAT+AGG + Chr4:1542881-1542900 MsG0480018205.01.T01:intron 35.0%
GCGTCTTTATATCCAGAATA+CGG + Chr4:1541844-1541863 MsG0480018205.01.T01:CDS 35.0%
GCTAAAGCAGATGAGAAAAT+AGG + Chr4:1545497-1545516 MsG0480018205.01.T01:CDS 35.0%
GCTTACATATGATGGTTCAA+AGG + Chr4:1543301-1543320 MsG0480018205.01.T01:intron 35.0%
GCTTCTTGTGGAGTTAAAAT+AGG - Chr4:1541700-1541719 None:intergenic 35.0%
GTCCATAAAATTTCAGATGG+TGG + Chr4:1544134-1544153 MsG0480018205.01.T01:intron 35.0%
GTTTATGAGATGAAGCTTTG+CGG - Chr4:1544800-1544819 None:intergenic 35.0%
GTTTATGTGCTAAGTAAGAG+AGG - Chr4:1543871-1543890 None:intergenic 35.0%
TCAAGTTCCTTGCTGAAAAA+AGG - Chr4:1545368-1545387 None:intergenic 35.0%
TCTATCTCTCTCAAATCCAA+AGG + Chr4:1544627-1544646 MsG0480018205.01.T01:intron 35.0%
TGAGTCATTCTTCAAACCTT+TGG - Chr4:1544646-1544665 None:intergenic 35.0%
TGGAATTAAGAAGATCCATG+TGG + Chr4:1543279-1543298 MsG0480018205.01.T01:intron 35.0%
TGGAGTTTAACATGGGAAAT+GGG - Chr4:1543748-1543767 None:intergenic 35.0%
TGGATTGTAGTATGTAGAGT+TGG - Chr4:1544690-1544709 None:intergenic 35.0%
TGTGGATCTTCTTATATACC+AGG - Chr4:1543391-1543410 None:intergenic 35.0%
TTATAGAAAAGGACAATGGG+TGG - Chr4:1543768-1543787 None:intergenic 35.0%
TTGTCAAATTCAAGGTACAG+GGG + Chr4:1544443-1544462 MsG0480018205.01.T01:intron 35.0%
TTGTGAAAGAGAGTTCTCAA+TGG + Chr4:1545976-1545995 MsG0480018205.01.T01:CDS 35.0%
TTGTGGTAATCCTTACCATT+AGG - Chr4:1541037-1541056 None:intergenic 35.0%
TTTCCACTACAGTAATGCTT+AGG - Chr4:1542177-1542196 None:intergenic 35.0%
! AATATGCGCAAGGGTAATTT+TGG + Chr4:1543500-1543519 MsG0480018205.01.T01:intron 35.0%
! ACTTTTGGATATGTTGCTCA+AGG + Chr4:1542045-1542064 MsG0480018205.01.T01:CDS 35.0%
! CAAATACCTTATTTGGACAC+CGG + Chr4:1541111-1541130 MsG0480018205.01.T01:CDS 35.0%
! CACATTTTCCATGGTAGAAA+AGG + Chr4:1543719-1543738 MsG0480018205.01.T01:intron 35.0%
! CTCTTTGAGGAGTTTACAAA+AGG + Chr4:1544041-1544060 MsG0480018205.01.T01:intron 35.0%
! GCAGTTTTTCTTCGTCATTA+TGG - Chr4:1544710-1544729 None:intergenic 35.0%
! GGGGTTCCAATATAATGTTT+TGG + Chr4:1542846-1542865 MsG0480018205.01.T01:intron 35.0%
! TACCAGAAAAGTCTCCTTTT+TGG + Chr4:1541275-1541294 MsG0480018205.01.T01:CDS 35.0%
! TTCCAAAAAGGAGACTTTTC+TGG - Chr4:1541280-1541299 None:intergenic 35.0%
!! AAAGGTGTCATGAAAAGAGA+AGG - Chr4:1545350-1545369 None:intergenic 35.0%
!! AATGGTGTCATGAAAAGAGA+AGG - Chr4:1541505-1541524 None:intergenic 35.0%
!! ATTAGCTTGTATAGAAGCCA+TGG - Chr4:1545932-1545951 None:intergenic 35.0%
!! TACTACCAAAAGTACTTGGT+AGG + Chr4:1545606-1545625 MsG0480018205.01.T01:CDS 35.0%
!! TGCCACCATCTGAAATTTTA+TGG - Chr4:1544139-1544158 None:intergenic 35.0%
!! TTTTGTTTCTCTTCACCACT+TGG - Chr4:1545782-1545801 None:intergenic 35.0%
!! TTTTTGGTCAGGTGTAAAGT+TGG + Chr4:1542248-1542267 MsG0480018205.01.T01:CDS 35.0%
!!! AACTTGCGTAAGGGTATTTT+TGG - Chr4:1542992-1543011 None:intergenic 35.0%
!!! AGCCGTTTTTGAATTCAACT+TGG + Chr4:1541248-1541267 MsG0480018205.01.T01:CDS 35.0%
!!! TTTGGTTTTATGAGGTGAGT+CGG + Chr4:1542810-1542829 MsG0480018205.01.T01:intron 35.0%
!!! TTTGTTTTTGTCGCTAGAAG+TGG - Chr4:1541800-1541819 None:intergenic 35.0%
AAACCTGTTGTTGTAGCTGT+TGG - Chr4:1544505-1544524 None:intergenic 40.0%
ACAAATGTCACAACCAATGG+AGG + Chr4:1544107-1544126 MsG0480018205.01.T01:intron 40.0%
ACAATGGGTGGAGTTTAACA+TGG - Chr4:1543756-1543775 None:intergenic 40.0%
ACCATCATATGTAAGCCACA+TGG - Chr4:1543297-1543316 None:intergenic 40.0%
AGATTCGGGAAAGACAAACA+AGG + Chr4:1545059-1545078 MsG0480018205.01.T01:CDS 40.0%
AGGAAACCAAATGGTTAGCA+TGG + Chr4:1541144-1541163 MsG0480018205.01.T01:CDS 40.0%
AGGGAACCAAATTGTTAGCA+TGG + Chr4:1544989-1545008 MsG0480018205.01.T01:CDS 40.0%
ATAGAGGTTCATCAACCAAG+TGG + Chr4:1545764-1545783 MsG0480018205.01.T01:CDS 40.0%
ATGAACCTCTATCATTTCCC+CGG - Chr4:1545756-1545775 None:intergenic 40.0%
ATGGGCCTATGTTAGTAAAC+CGG - Chr4:1542889-1542908 None:intergenic 40.0%
CAATGGGTGGAGTTTAACAT+GGG - Chr4:1543755-1543774 None:intergenic 40.0%
CCACTACAATAATGCTTAGG+AGG - Chr4:1546019-1546038 None:intergenic 40.0%
CCTCCTAAGCATTATTGTAG+TGG + Chr4:1546016-1546035 MsG0480018205.01.T01:CDS 40.0%
CGAATCTTACAAGCATCACA+CGG - Chr4:1545046-1545065 None:intergenic 40.0%
CGAGCTGAATGGAAATATCA+TGG - Chr4:1544539-1544558 None:intergenic 40.0%
CGTGTGATGCTTGTAAGATT+CGG + Chr4:1545044-1545063 MsG0480018205.01.T01:CDS 40.0%
GACGAAGAAAAACTGCTTGA+TGG + Chr4:1544714-1544733 MsG0480018205.01.T01:CDS 40.0%
GAGAAATCTCTTTCACAAGC+TGG - Chr4:1542129-1542148 None:intergenic 40.0%
GCGTTACTTAATATGCGCAA+GGG + Chr4:1543491-1543510 MsG0480018205.01.T01:intron 40.0%
GTGGAGTTTAACATGGGAAA+TGG - Chr4:1543749-1543768 None:intergenic 40.0%
GTGTGATGCTTGTAAGATTC+GGG + Chr4:1545045-1545064 MsG0480018205.01.T01:CDS 40.0%
TCCATGTGGCTTACATATGA+TGG + Chr4:1543293-1543312 MsG0480018205.01.T01:intron 40.0%
TCTTCTTATATACCAGGCAC+TGG - Chr4:1543385-1543404 None:intergenic 40.0%
TGAATCTTACGAGCATCACA+CGG - Chr4:1541201-1541220 None:intergenic 40.0%
TGAGGAGTTTACAAAAGGCA+AGG + Chr4:1544046-1544065 MsG0480018205.01.T01:intron 40.0%
TGCGTTACTTAATATGCGCA+AGG + Chr4:1543490-1543509 MsG0480018205.01.T01:intron 40.0%
TGGTTTCCTAAACCATTAGC+CGG - Chr4:1541133-1541152 None:intergenic 40.0%
TTCCAAAAAGGAGATGTCTC+TGG - Chr4:1545125-1545144 None:intergenic 40.0%
TTGCAGCCATGCTAACAATT+TGG - Chr4:1544998-1545017 None:intergenic 40.0%
TTTATGGACTCTTCCTCCAT+TGG - Chr4:1544123-1544142 None:intergenic 40.0%
! AGACACGGTTTTTCATCATC+TGG + Chr4:1545406-1545425 MsG0480018205.01.T01:CDS 40.0%
! ATGGGAATCCTTTTCTACCA+TGG - Chr4:1543730-1543749 None:intergenic 40.0%
! GACACGGTTTTTCACCATTT+AGG + Chr4:1541562-1541581 MsG0480018205.01.T01:CDS 40.0%
! GACACGGTTTTTCATCATCT+GGG + Chr4:1545407-1545426 MsG0480018205.01.T01:CDS 40.0%
! TACCAGAGACATCTCCTTTT+TGG + Chr4:1545120-1545139 MsG0480018205.01.T01:CDS 40.0%
! TCAGATGGTGGCAACATAAA+AGG + Chr4:1544146-1544165 MsG0480018205.01.T01:intron 40.0%
! TTAGGAGGAGCATGATAACA+AGG - Chr4:1542159-1542178 None:intergenic 40.0%
! TTAGGAGGAGCATGATAACA+TGG - Chr4:1542159-1542178 None:intergenic 40.0%
! TTGTGGTATCTAGAGCTTGA+CGG + Chr4:1543134-1543153 MsG0480018205.01.T01:intron 40.0%
!! AAAGGCAAGGTGCTATTTGT+TGG + Chr4:1544059-1544078 MsG0480018205.01.T01:intron 40.0%
!! CTTACGTGAGTTAATTTGCG+CGG + Chr4:1543436-1543455 MsG0480018205.01.T01:intron 40.0%
!! GCGTTAGTTAACTTGCGTAA+GGG - Chr4:1543001-1543020 None:intergenic 40.0%
!! TGCGTTAGTTAACTTGCGTA+AGG - Chr4:1543002-1543021 None:intergenic 40.0%
!!! CATGACACCTTTTTTCAGCA+AGG + Chr4:1545358-1545377 MsG0480018205.01.T01:CDS 40.0%
!!! CTTGATGGACTTTTAGCTTC+TGG + Chr4:1544729-1544748 MsG0480018205.01.T01:CDS 40.0%
AAGGTGTGGACCTAATGGTA+AGG + Chr4:1541024-1541043 MsG0480018205.01.T01:CDS 45.0%
ACTTCTTGGGGAGTTGAAAG+AGG - Chr4:1545545-1545564 None:intergenic 45.0%
AGACCAACAGCTACAACAAC+AGG + Chr4:1544499-1544518 MsG0480018205.01.T01:CDS 45.0%
AGTCTCCATGCTTCATTCGA+AGG - Chr4:1545449-1545468 None:intergenic 45.0%
AGTGACTCGAAGGATTTCCA+TGG - Chr4:1543907-1543926 None:intergenic 45.0%
ATGATGGCTCATGCATAAGC+AGG + Chr4:1540912-1540931 MsG0480018205.01.T01:CDS 45.0%
ATTCATTCATCACCAGTGCC+TGG + Chr4:1543370-1543389 MsG0480018205.01.T01:intron 45.0%
ATTGCGATTTGCGAGCTGAA+TGG - Chr4:1544550-1544569 None:intergenic 45.0%
CACAAGCTTCTCTCTCTTTG+AGG + Chr4:1544028-1544047 MsG0480018205.01.T01:intron 45.0%
CATTAGCCGGTGTCCAAATA+AGG - Chr4:1541120-1541139 None:intergenic 45.0%
CCACTACAGTAATGCTTAGG+AGG - Chr4:1542174-1542193 None:intergenic 45.0%
CCTCCTAAGCATTACTGTAG+TGG + Chr4:1542171-1542190 MsG0480018205.01.T01:CDS 45.0%
CTCAAGGCTTGGGAAATTTG+AGG + Chr4:1542061-1542080 MsG0480018205.01.T01:CDS 45.0%
CTTCATTCGAAGGGTGGAAA+AGG - Chr4:1541594-1541613 None:intergenic 45.0%
GAGAACTCTCTTTCACAAGC+TGG - Chr4:1545974-1545993 None:intergenic 45.0%
GGAAAAGGTAGCGTCCTAAA+TGG - Chr4:1541579-1541598 None:intergenic 45.0%
GGAAATCCTTCGAGTCACTA+AGG + Chr4:1543908-1543927 MsG0480018205.01.T01:intron 45.0%
GGATATGTTGCTCAAGGCTT+GGG + Chr4:1542051-1542070 MsG0480018205.01.T01:CDS 45.0%
GTCTCCATGCTTCATTCGAA+GGG - Chr4:1545448-1545467 None:intergenic 45.0%
GTGTGATGCTCGTAAGATTC+AGG + Chr4:1541200-1541219 MsG0480018205.01.T01:CDS 45.0%
TGAGTCGGAAATCTGTAGGT+GGG + Chr4:1542825-1542844 MsG0480018205.01.T01:intron 45.0%
TGGATATGTTGCTCAAGGCT+TGG + Chr4:1542050-1542069 MsG0480018205.01.T01:CDS 45.0%
TGGATCGGAGTATGTAGAGT+TGG - Chr4:1540845-1540864 None:intergenic 45.0%
TGGTTCCCTAAACCATTAGC+CGG - Chr4:1544978-1544997 None:intergenic 45.0%
TGTTACCGGGGAAATGATAG+AGG + Chr4:1545748-1545767 MsG0480018205.01.T01:CDS 45.0%
TTGCAGCCATGCTAACCATT+TGG - Chr4:1541153-1541172 None:intergenic 45.0%
! ATTCCAAAAGCATGGCTCTG+TGG - Chr4:1543409-1543428 None:intergenic 45.0%
! CATAGAAAGTGCGGACCTAA+TGG + Chr4:1544864-1544883 MsG0480018205.01.T01:CDS 45.0%
! CATAGAAGGTGTGGACCTAA+TGG + Chr4:1541019-1541038 MsG0480018205.01.T01:CDS 45.0%
! CTTATTTGGACACCGGCTAA+TGG + Chr4:1541118-1541137 MsG0480018205.01.T01:CDS 45.0%
! GGTTTGGGCTTGATGATTTC+CGG + Chr4:1542867-1542886 MsG0480018205.01.T01:intron 45.0%
! TTTTGCTGCTCTTCACCACT+TGG - Chr4:1541937-1541956 None:intergenic 45.0%
!! GTAATTTTGGCATGGCTGCA+GGG + Chr4:1543513-1543532 MsG0480018205.01.T01:intron 45.0%
!! TCTGACCTTCTGAAGCATGT+CGG - Chr4:1542749-1542768 None:intergenic 45.0%
!!! GCGTAAGGGTATTTTTGGCA+GGG - Chr4:1542987-1543006 None:intergenic 45.0%
!!! TGCGTAAGGGTATTTTTGGC+AGG - Chr4:1542988-1543007 None:intergenic 45.0%
!!! ATTAATAGTATAATAATTTT+TGG + Chr4:1544597-1544616 MsG0480018205.01.T01:intron 5.0%
!!! TTAATAGTATAATAATTTTT+GGG + Chr4:1544598-1544617 MsG0480018205.01.T01:intron 5.0%
AGAGCTTGACGGTGCTTCAA+TGG + Chr4:1543145-1543164 MsG0480018205.01.T01:intron 50.0%
AGTCGGAAATCTGTAGGTGG+GGG + Chr4:1542827-1542846 MsG0480018205.01.T01:intron 50.0%
AGTCTCCACGCTTCATTCGA+AGG - Chr4:1541604-1541623 None:intergenic 50.0%
CAAGCATCACACGGTTTGTG+AGG - Chr4:1545037-1545056 None:intergenic 50.0%
GAGGTGAGTCGGAAATCTGT+AGG + Chr4:1542821-1542840 MsG0480018205.01.T01:intron 50.0%
GAGTCGGAAATCTGTAGGTG+GGG + Chr4:1542826-1542845 MsG0480018205.01.T01:intron 50.0%
GCATGTCCTTAGTGACTCGA+AGG - Chr4:1543917-1543936 None:intergenic 50.0%
GTCTCCACGCTTCATTCGAA+GGG - Chr4:1541603-1541622 None:intergenic 50.0%
GTGAGTCGGAAATCTGTAGG+TGG + Chr4:1542824-1542843 MsG0480018205.01.T01:intron 50.0%
TAGCTCCGACATGCTTCAGA+AGG + Chr4:1542741-1542760 MsG0480018205.01.T01:intron 50.0%
TCCACCCTTCGAATGAAGCA+TGG + Chr4:1545441-1545460 MsG0480018205.01.T01:CDS 50.0%
TCCATGCTTCATTCGAAGGG+TGG - Chr4:1545445-1545464 None:intergenic 50.0%
! GATCCACAGAGCCATGCTTT+TGG + Chr4:1543403-1543422 MsG0480018205.01.T01:intron 50.0%
! GCTTGGGAAATTTGAGGCCA+TGG + Chr4:1542067-1542086 MsG0480018205.01.T01:CDS 50.0%
! GGACACCGGCTAATGGTTTA+GGG + Chr4:1541125-1541144 MsG0480018205.01.T01:CDS 50.0%
! TGGACACCGGCTAATGGTTT+AGG + Chr4:1541124-1541143 MsG0480018205.01.T01:CDS 50.0%
!! GCGCAAGGGTAATTTTGGCA+TGG + Chr4:1543505-1543524 MsG0480018205.01.T01:intron 50.0%
!! GGTAATTTTGGCATGGCTGC+AGG + Chr4:1543512-1543531 MsG0480018205.01.T01:intron 50.0%
!!! GTATTTTTGGCAGGGCTGCA+GGG - Chr4:1542979-1542998 None:intergenic 50.0%
AGGGCGCAAGCAAAATGTGC+AGG - Chr4:1542960-1542979 None:intergenic 55.0%
CGAGCATCACACGGTTTGTG+AGG - Chr4:1541192-1541211 None:intergenic 55.0%
GGGCGCAAGCAAAATGTGCA+GGG - Chr4:1542959-1542978 None:intergenic 55.0%
TCCACCCTTCGAATGAAGCG+TGG + Chr4:1541596-1541615 MsG0480018205.01.T01:CDS 55.0%
TCCACGCTTCATTCGAAGGG+TGG - Chr4:1541600-1541619 None:intergenic 55.0%
!!! GGTATTTTTGGCAGGGCTGC+AGG - Chr4:1542980-1542999 None:intergenic 55.0%
AGGGCGCGAGCAAAATGTGC+TGG + Chr4:1543532-1543551 MsG0480018205.01.T01:intron 60.0%
GGGCGCGAGCAAAATGTGCT+GGG + Chr4:1543533-1543552 MsG0480018205.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1540821 1546135 1540821 ID=MsG0480018205.01;Name=MsG0480018205.01
Chr4 mRNA 1540821 1546135 1540821 ID=MsG0480018205.01.T01;Parent=MsG0480018205.01;Name=MsG0480018205.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|999
Chr4 exon 1540821 1542269 1540821 ID=MsG0480018205.01.T01:exon:950;Parent=MsG0480018205.01.T01
Chr4 exon 1544457 1544520 1544457 ID=MsG0480018205.01.T01:exon:951;Parent=MsG0480018205.01.T01
Chr4 exon 1544649 1546135 1544649 ID=MsG0480018205.01.T01:exon:952;Parent=MsG0480018205.01.T01
Chr4 CDS 1540821 1542269 1540821 ID=MsG0480018205.01.T01:cds;Parent=MsG0480018205.01.T01
Chr4 CDS 1544457 1544520 1544457 ID=MsG0480018205.01.T01:cds;Parent=MsG0480018205.01.T01
Chr4 CDS 1544649 1546135 1544649 ID=MsG0480018205.01.T01:cds;Parent=MsG0480018205.01.T01
Gene Sequence

>MsG0480018205.01.T01

ATGACAAGTTCCACAAATGATCCAACTCTACATACTCCGATCCATAATGACAAAGAAAAATTGCTTGATGGACTCTTAGCTTCTGAATTTGATGATGGCTCATGCATAAGCAGGTTACAATCTCATTTATATCGCAAAGTTTCACCTCATAAACCTTCTTCATATTTAATATCGAAACTACGCAACTATGAAAAAATTCATAGAAGGTGTGGACCTAATGGTAAGGATTACCACAACAGCATGAGAAATATTCTAAATTCTAAGAACATTAAGGGTCATGTTTCAAAGTGCAAATACCTTATTTGGACACCGGCTAATGGTTTAGGAAACCAAATGGTTAGCATGGCTGCAACATTTCTTTATGCTCTCCTCACAAACCGTGTGATGCTCGTAAGATTCAGGAAAGACAAACAAGGTATATTTTGTGAGCCGTTTTTGAATTCAACTTGGTTGTTACCAGAAAAGTCTCCTTTTTGGAATGAAAATCATGTTGAAACATATCAAAGTTTGATAGAGAAGGAAAAAGCTAACAATCATTCAAAATTTGAATTGCCATCATCATTATTTCTCAATCTACAATACCGACCAAATTTACCTGAGAAATTTTTTCACTGTGATGATAGTCAAGCTCTTATCATTAAGGTTCCTTTGTTAATTTTGCAATCAGATCAATATTTTGTACCTTCTCTTTTCATGACACCATTTTTCAGCAAAGAACTTGAAAAAATGTTCGTTGAAAAGGACACGGTTTTTCACCATTTAGGACGCTACCTTTTCCACCCTTCGAATGAAGCGTGGAGACTAATCACAAATTTCTATCAAACACATTTGGCTAAAGCAAATGAGAAAATAGGCCTTCAAATAAGAGTGTTCAATCCTATTTTAACTCCACAAGAAGCAATTATGAATTTAGTTTTAAATTGCACTATTCACAATAAGTTACTACCAAACGTACTTGATATGAAAAATTCAATATCCACTTCTAGCGACAAAAACAAAGCGATTATGAAGGTTGTTCTTGTTGCGTCTTTATATCCAGAATACGGTGATAATTTAAAGACGATGTATACGAATAAATCAACTTCTTCAGGGGAAGTAATAGAAGTTCATCAACCAAGTGGTGAAGAGCAGCAAAAATTTAATGATAATAAGCATAATATGAAGGCTTGGGTTGATATGTATCTACTAAGTTTATCTGATGTGTTGGTTACTACTTCTTTGTCTACTTTTGGATATGTTGCTCAAGGCTTGGGAAATTTGAGGCCATGGCTTCTATACAAGATAATAAGTAATGACACTCATTTTCCAGCTTGTGAAAGAGATTTCTCAATGGAACCATGTTATCATGCTCCTCCTAAGCATTACTGTAGTGGAAAGCCAATAAAAGATTTTGCTTCTTCTTTCATTTACATGAGGAAATGTATGGATTTTTGGTCAGGTGTAAAGTTGGTACAGGGGAAAACTCAAAATGCTACTACAACAACTGAAGGAAGACCAACAGCTACAACAACAGGTTTGAAGAATGACTCAATATCAAGTTCCACAAATGATCCAACTCTACATACTACAATCCATAATGACGAAGAAAAACTGCTTGATGGACTTTTAGCTTCTGGATTTGATGATACATCATGCATAAGCAGGTTACAATCTCATTTCTACCGCAAAGCTTCATCTCATAAACCTTCTTCGTATTTAATATTGAAACTACGCGGCTATGAAGAAATTCATAGAAAGTGCGGACCTAATGGTAAAGATTACCACAAAAGCATGACAAAAATTTCACATTCTAAGAGCATTAAGGGTGATGTTTCAATGTGCAAATACCTTATTTGGACACCGGCTAATGGTTTAGGGAACCAAATTGTTAGCATGGCTGCAACATTTCTTTATGCTCTCCTCACAAACCGTGTGATGCTTGTAAGATTCGGGAAAGACAAACAAGGTATATTTTGTGAGCCATTTTTGAATTCAACTTGGTTGTTACCAGAGACATCTCCTTTTTGGAATGAAAATCATGTTGAAACATATCAAAGCATGATAAAGAAGGAAAAAGCTAACAATAATTCAGAAGTGGATTTGCCATCATCGCTATTTCTCAATCTACAATACCGACCAAATTTACCTGAGAAATTTTTTCACTGTGACGGTAGTCAAGCTCTTATCATTAAGGTTCCTTTGTTAATTTTGCAATCAGATCAATATTTTGTACCTTCTCTTTTCATGACACCTTTTTTCAGCAAGGAACTTGAAAAAATCTTCGTTGAAAAAGACACGGTTTTTCATCATCTGGGACGCTACCTTTTCCACCCTTCGAATGAAGCATGGAGACTAATCAAAAATTTCTATCAAGCACACTTGGCTAAAGCAGATGAGAAAATAGGCCTTCAAGTAAGAGTGTTCAATCCTCTTTCAACTCCCCAAGAAGTGATTATGAATCTAGTTTTAAATTGCACCATTCACAATAATTTACTACCAAAAGTACTTGGTAGGAAAAATTCATTGTCAACTTCTGGCGACAAAAACAAGACGATTATGAAGGTTGTTCTTGTTACATCTTTACATCCACAATACGGTGAGAATTTAAAGACGATGTATATGAATAAATCAACTGTTACCGGGGAAATGATAGAGGTTCATCAACCAAGTGGTGAAGAGAAACAAAAATTTAATGACAATAAGCATAATATGAAAGCATGGATTGATATGTATCTACTAAGTTTATCTGATGTGTTGGTAACTACTTCTTTGTCTACTTTTGGATATGTTGCTCAAGGCTTGGGAAATTTGAGGCCATGGCTTCTATACAAGCTAATAAACAATGAGACTCATTTTCCAGCTTGTGAAAGAGAGTTCTCAATGGAGCCTTGTTATCATGCTCCTCCTAAGCATTATTGTAGTGGAAAGCCTATAAAAGATTTTGCTTCTTCTTTCATTTATATGAGGAAATGTAAGGATTTTTGGTTTGGTGTAAAGTTGGTTAGTGATATAAATAGTTAG
Protein sequence

>MsG0480018205.01.T01

MTSSTNDPTLHTPIHNDKEKLLDGLLASEFDDGSCISRLQSHLYRKVSPHKPSSYLISKLRNYEKIHRRCGPNGKDYHNSMRNILNSKNIKGHVSKCKYLIWTPANGLGNQMVSMAATFLYALLTNRVMLVRFRKDKQGIFCEPFLNSTWLLPEKSPFWNENHVETYQSLIEKEKANNHSKFELPSSLFLNLQYRPNLPEKFFHCDDSQALIIKVPLLILQSDQYFVPSLFMTPFFSKELEKMFVEKDTVFHHLGRYLFHPSNEAWRLITNFYQTHLAKANEKIGLQIRVFNPILTPQEAIMNLVLNCTIHNKLLPNVLDMKNSISTSSDKNKAIMKVVLVASLYPEYGDNLKTMYTNKSTSSGEVIEVHQPSGEEQQKFNDNKHNMKAWVDMYLLSLSDVLVTTSLSTFGYVAQGLGNLRPWLLYKIISNDTHFPACERDFSMEPCYHAPPKHYCSGKPIKDFASSFIYMRKCMDFWSGVKLVQGKTQNATTTTEGRPTATTTGLKNDSISSSTNDPTLHTTIHNDEEKLLDGLLASGFDDTSCISRLQSHFYRKASSHKPSSYLILKLRGYEEIHRKCGPNGKDYHKSMTKISHSKSIKGDVSMCKYLIWTPANGLGNQIVSMAATFLYALLTNRVMLVRFGKDKQGIFCEPFLNSTWLLPETSPFWNENHVETYQSMIKKEKANNNSEVDLPSSLFLNLQYRPNLPEKFFHCDGSQALIIKVPLLILQSDQYFVPSLFMTPFFSKELEKIFVEKDTVFHHLGRYLFHPSNEAWRLIKNFYQAHLAKADEKIGLQVRVFNPLSTPQEVIMNLVLNCTIHNNLLPKVLGRKNSLSTSGDKNKTIMKVVLVTSLHPQYGENLKTMYMNKSTVTGEMIEVHQPSGEEKQKFNDNKHNMKAWIDMYLLSLSDVLVTTSLSTFGYVAQGLGNLRPWLLYKLINNETHFPACEREFSMEPCYHAPPKHYCSGKPIKDFASSFIYMRKCKDFWFGVKLVSDINS*