AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019017.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019017.01.T01 MTR_4g021880 67.857 336 16 4 1 248 150 481 1.82e-148 427
MsG0480019017.01.T01 MTR_4g021880 57.812 256 16 4 1 168 150 401 1.45e-82 255
MsG0480019017.01.T01 MTR_2g096760 44.675 338 90 8 2 249 65 395 1.04e-74 236
MsG0480019017.01.T01 MTR_4g063830 44.880 332 94 6 2 248 66 393 4.11e-74 234
MsG0480019017.01.T01 MTR_1g100797 28.899 218 128 6 18 230 180 375 8.10e-13 68.9
MsG0480019017.01.T01 MTR_1g100797 28.899 218 128 6 18 230 76 271 1.35e-12 67.8
MsG0480019017.01.T01 MTR_0020s0130 29.493 217 128 8 18 230 180 375 1.28e-11 65.1
MsG0480019017.01.T01 MTR_4g129470 27.386 241 134 10 3 230 163 375 6.18e-11 63.2
MsG0480019017.01.T01 MTR_4g129470 27.386 241 134 10 3 230 75 287 7.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019017.01.T01 AT2G28840 44.548 321 85 6 1 234 64 378 8.61e-72 228
MsG0480019017.01.T01 AT2G28840 44.340 318 84 6 4 234 53 364 1.25e-70 225
MsG0480019017.01.T01 AT5G07270 28.505 214 127 6 18 227 174 365 8.65e-13 68.9

Find 150 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCCATTTCCTCTCTTTAA+TGG 0.169535 4:+13347471 None:intergenic
CATAGACACACACCTGTTTA+TGG 0.203955 4:+13345982 None:intergenic
CAAGAGCCCCGTTGTCTAAT+AGG 0.208269 4:+13345292 None:intergenic
AAAAGTAAGTTGAAAATTAA+TGG 0.221381 4:+13343346 None:intergenic
CTTGTTTAGTCACTCTTTCA+TGG 0.239161 4:-13345485 MsG0480019017.01.T01:CDS
TTGAATAGATTGACAAGTTC+CGG 0.271170 4:+13343301 None:intergenic
TATATACTTACACTTTATAT+TGG 0.297551 4:+13343522 None:intergenic
CCCGCGTCCACCGCCGTATA+AGG 0.303630 4:-13347544 MsG0480019017.01.T01:five_prime_UTR
TGGCCATGTAGATTCATTAA+AGG 0.303923 4:-13345547 MsG0480019017.01.T01:intron
ACCTTCTTGGTTTGTTGGAC+TGG 0.306234 4:+13343909 None:intergenic
TCTTTCATGGTCCCCATCTA+TGG 0.310027 4:-13345472 MsG0480019017.01.T01:CDS
CATCAGCCGCACCTCTTGTT+TGG 0.313334 4:-13344443 MsG0480019017.01.T01:CDS
TCTTGACCTTCTTGGTTTGT+TGG 0.315323 4:+13343904 None:intergenic
AGGATCGCTAGTCGCAATTC+AGG 0.319801 4:-13343818 MsG0480019017.01.T01:CDS
AGTCTTTGTAATCCGGTTAT+CGG 0.319837 4:-13343579 MsG0480019017.01.T01:three_prime_UTR
GTTTGCTTCTGCTGGTGTAA+TGG 0.320206 4:-13347395 MsG0480019017.01.T01:five_prime_UTR
GATCCATTAAAGAGAGGAAA+TGG 0.320827 4:-13347474 MsG0480019017.01.T01:five_prime_UTR
TTTGCTTCTGCTGGTGTAAT+GGG 0.331360 4:-13347394 MsG0480019017.01.T01:five_prime_UTR
CCCGTGGTGCAACCGGTTGC+AGG 0.331520 4:+13344015 None:intergenic
TTGAGGATGATGTGGTGTTT+TGG 0.346372 4:-13347345 MsG0480019017.01.T01:five_prime_UTR
AATCTATTCAACTGAAGAAT+TGG 0.357508 4:-13343289 MsG0480019017.01.T01:three_prime_UTR
GCCTTATACGGCGGTGGACG+CGG 0.359158 4:+13347543 None:intergenic
TTCATTCCCTATTAGACAAC+GGG 0.360140 4:-13345299 MsG0480019017.01.T01:CDS
GCGGCGCGTGAGGAAGTTTC+CGG 0.361405 4:-13347522 MsG0480019017.01.T01:five_prime_UTR
AAAGCTTCAAATATATTGTC+TGG 0.365946 4:-13343157 MsG0480019017.01.T01:three_prime_UTR
AACTGGTCCCGTGGTGCAAC+CGG 0.369241 4:+13344008 None:intergenic
AGGATGGCACCTCGACAAAA+TGG 0.371108 4:+13343982 None:intergenic
TCCTCACGCGCCGCCTTATA+CGG 0.371989 4:+13347531 None:intergenic
TCTCTTATAGGAAAGCAATA+TGG 0.375095 4:-13344148 MsG0480019017.01.T01:intron
AGAGGTACTATATTCTTATA+TGG 0.376146 4:-13343610 MsG0480019017.01.T01:three_prime_UTR
TCACATGACACATCCATAGA+TGG 0.381658 4:+13345459 None:intergenic
GTGCAACCGGTTGCAGGATC+AGG 0.381813 4:+13344021 None:intergenic
AAGAGCCCCGTTGTCTAATA+GGG 0.391759 4:+13345293 None:intergenic
TGTGCTTCAACCGGTGGATA+CGG 0.393674 4:-13345267 MsG0480019017.01.T01:CDS
CTGTTTGAGTCTTTGTAATC+CGG 0.395791 4:-13343586 MsG0480019017.01.T01:three_prime_UTR
AGACATCGACTTTGACATTC+CGG 0.396524 4:+13346012 None:intergenic
TGAATAGATTGACAAGTTCC+GGG 0.399754 4:+13343302 None:intergenic
TTAGGTGCTTTCAATGTTGT+TGG 0.403789 4:-13346036 MsG0480019017.01.T01:intron
CCTGCAACCGGTTGCACCAC+GGG 0.408050 4:-13344015 MsG0480019017.01.T01:CDS
GATGGAAATTGTTGAAAGTA+TGG 0.408192 4:-13347368 MsG0480019017.01.T01:five_prime_UTR
GCTCTTGTTTGTGCTTCAAC+CGG 0.413267 4:-13345276 MsG0480019017.01.T01:CDS
TTGTCAGCCATTGGCTCATT+CGG 0.419213 4:-13343842 MsG0480019017.01.T01:CDS
AAAGTAAGTTGAAAATTAAT+GGG 0.422789 4:+13343347 None:intergenic
TTCAAATAATATGCTACTAT+AGG 0.429925 4:+13343681 None:intergenic
TGCATCACAGCCAACATTAA+CGG 0.430406 4:+13345829 None:intergenic
TGCTTTCAATGTTGTTGGAC+CGG 0.433448 4:-13346031 MsG0480019017.01.T01:exon
TGTCTTGAATCGCCATAAAC+AGG 0.438427 4:-13345994 MsG0480019017.01.T01:intron
TCTTGGCAACATTTAATTGA+AGG 0.438454 4:+13343962 None:intergenic
ATTGGTATTTCAAAGTTTAG+TGG 0.443478 4:-13343271 MsG0480019017.01.T01:three_prime_UTR
GTCAAAGTTCAACCGATAAC+CGG 0.443975 4:+13343567 None:intergenic
GAATGATCTTAGTGATCGTT+CGG 0.447923 4:+13343641 None:intergenic
CCTTATACGGCGGTGGACGC+GGG 0.450477 4:+13347544 None:intergenic
AATCACCATTCATATGTCAT+TGG 0.450883 4:+13343727 None:intergenic
TTAGTGATCGTTCGGACAAT+GGG 0.459711 4:+13343649 None:intergenic
AATAGTGTGTTTGCTTCTGC+TGG 0.459917 4:-13347403 MsG0480019017.01.T01:five_prime_UTR
AAGTTGAAAATTAATGGGTC+TGG 0.460766 4:+13343352 None:intergenic
TTCAAGAGTTTGTCAGCCAT+TGG 0.462380 4:-13343851 MsG0480019017.01.T01:CDS
GGAAATAAGCAGTTAAGTAT+TGG 0.464188 4:+13347606 None:intergenic
ATCACTATCAGTCTTGATCT+TGG 0.466006 4:+13343945 None:intergenic
CTGATGAACTTTAGCGGAGA+TGG 0.469218 4:+13344420 None:intergenic
ATGTTGATGTTCAAATCTCT+TGG 0.469591 4:-13343466 MsG0480019017.01.T01:three_prime_UTR
AAGAAGCCTGATCCTGCAAC+CGG 0.473327 4:-13344027 MsG0480019017.01.T01:CDS
CCTCGACAAAATGGACAAAC+TGG 0.484711 4:+13343991 None:intergenic
TGACCTCAATTGTGCACACT+TGG 0.486372 4:+13344103 None:intergenic
TTGGTTGGACTGAAGAAGTC+AGG 0.492319 4:+13347585 None:intergenic
GCACGTGAAGAAGTGGTTGC+CGG 0.495542 4:+13347503 None:intergenic
GTGCTTCAACCGGTGGATAC+GGG 0.495609 4:-13345266 MsG0480019017.01.T01:intron
AAGCTTCAAATATATTGTCT+GGG 0.498430 4:-13343156 MsG0480019017.01.T01:three_prime_UTR
ACTAAACAAGAATCTGCAAC+AGG 0.499185 4:+13345498 None:intergenic
AACTGTGGCTGAGTAATGAT+AGG 0.503245 4:-13343188 MsG0480019017.01.T01:three_prime_UTR
GCTGTGATGCATGGAAAGAC+TGG 0.505325 4:-13345817 MsG0480019017.01.T01:CDS
TGTAAGTATATATGAGATGA+AGG 0.505326 4:-13343511 MsG0480019017.01.T01:three_prime_UTR
CTTAGTGATCGTTCGGACAA+TGG 0.507024 4:+13343648 None:intergenic
AGCTCGCTGATGAACTTTAG+CGG 0.516523 4:+13344414 None:intergenic
CTTGTTTGTGCTTCAACCGG+TGG 0.520146 4:-13345273 MsG0480019017.01.T01:CDS
CGACCAAGTGTGCACAATTG+AGG 0.520454 4:-13344106 MsG0480019017.01.T01:CDS
TTCTTAAGAGCAACTGTGAA+CGG 0.522067 4:+13344501 None:intergenic
TCCGGGTTGCAAATGAATCA+TGG 0.523375 4:+13343319 None:intergenic
TCCATGATTCATTTGCAACC+CGG 0.526182 4:-13343320 MsG0480019017.01.T01:three_prime_UTR
TAAGTCTTGATGATTGCTGA+TGG 0.529306 4:-13343761 MsG0480019017.01.T01:exon
AACAAGAGGTGCGGCTGATG+AGG 0.531096 4:+13344446 None:intergenic
CACATGACACATCCATAGAT+GGG 0.534437 4:+13345460 None:intergenic
GGCAACATTTAATTGAAGGA+TGG 0.535795 4:+13343966 None:intergenic
AGAAAATCAAATTTCAGCGA+AGG 0.537043 4:-13343884 MsG0480019017.01.T01:CDS
CGGCTGATGAGGGATCGAGC+AGG 0.540258 4:+13344457 None:intergenic
TCTTGAGGCAGCATAGTGCT+AGG 0.541497 4:+13344046 None:intergenic
TTGCAGGATCAGGCTTCTTG+AGG 0.542464 4:+13344031 None:intergenic
GAAAATCAAATTTCAGCGAA+GGG 0.543834 4:-13343883 MsG0480019017.01.T01:CDS
TTGTGAACATAAGATGGAAA+TGG 0.544393 4:-13345369 MsG0480019017.01.T01:intron
CAGCCATTGGCTCATTCGGA+AGG 0.547162 4:-13343838 MsG0480019017.01.T01:CDS
GAATCAATCGATTGTGTGGT+GGG 0.547257 4:-13347447 MsG0480019017.01.T01:five_prime_UTR
GACGCTCGCAGCTTGAATGA+AGG 0.548350 4:+13343425 None:intergenic
ACAAGAGGTGCGGCTGATGA+GGG 0.550454 4:+13344447 None:intergenic
TGCTGGTGTAATGGGTGAGA+TGG 0.550809 4:-13347386 MsG0480019017.01.T01:five_prime_UTR
AACTACCTCGATCCGACCAT+TGG 0.550881 4:+13347274 None:intergenic
ATCCATTAAAGAGAGGAAAT+GGG 0.550890 4:-13347473 MsG0480019017.01.T01:five_prime_UTR
TGCTTCCAATGACATATGAA+TGG 0.552209 4:-13343732 MsG0480019017.01.T01:three_prime_UTR
AAGATCATTCAAGACAATAG+AGG 0.554487 4:-13343628 MsG0480019017.01.T01:three_prime_UTR
ATGGAAAAGCTTATTCAAGC+TGG 0.555583 4:-13345790 MsG0480019017.01.T01:CDS
CTTCATTTAGCAGCTGCCAA+TGG 0.555784 4:-13347290 MsG0480019017.01.T01:five_prime_UTR
GCCGTATAAGGCGGCGCGTG+AGG 0.561570 4:-13347532 MsG0480019017.01.T01:five_prime_UTR
AGCAGCAAGGTGCAGCGGCG+TGG 0.564799 4:+13345344 None:intergenic
CGCGCCGCCTTATACGGCGG+TGG 0.566442 4:+13347537 None:intergenic
TCACGCGCCGCCTTATACGG+CGG 0.569594 4:+13347534 None:intergenic
GCGTCTGATGACACACGGCA+TGG 0.570443 4:-13343407 MsG0480019017.01.T01:three_prime_UTR
TCAGAACGTAGTGGAGATGA+AGG 0.572443 4:+13344306 None:intergenic
CGTTGTCTAATAGGGAATGA+AGG 0.572603 4:+13345301 None:intergenic
TCTCTAGACACCGTTAATGT+TGG 0.577223 4:-13345839 MsG0480019017.01.T01:intron
CAAGTATGATGATATTGTCT+CGG 0.577587 4:-13344280 MsG0480019017.01.T01:CDS
CAACAAGGCACGTGAAGAAG+TGG 0.580588 4:+13347496 None:intergenic
CGCTAGTCGCAATTCAGGAA+AGG 0.581409 4:-13343813 MsG0480019017.01.T01:CDS
GCATGGAAAGACTGGTTGCA+TGG 0.582253 4:-13345809 MsG0480019017.01.T01:CDS
ACCTTGCTGCTCGTCATAGA+CGG 0.587192 4:-13345332 MsG0480019017.01.T01:CDS
AATTGTTGAAAGTATGGTTG+AGG 0.587911 4:-13347362 MsG0480019017.01.T01:five_prime_UTR
CTCTCTTTAATGGATCAACA+AGG 0.588596 4:+13347481 None:intergenic
CTTGTTGATCCATTAAAGAG+AGG 0.589036 4:-13347480 MsG0480019017.01.T01:five_prime_UTR
ATTTAGCAGCTGCCAATGGT+CGG 0.589763 4:-13347286 MsG0480019017.01.T01:five_prime_UTR
CGATTATTACCCGTATCCAC+CGG 0.590839 4:+13345257 None:intergenic
GTTGCTTAGATACTCTGCAC+AGG 0.591492 4:-13343215 MsG0480019017.01.T01:three_prime_UTR
GCGTCCACCGCCGTATAAGG+CGG 0.596855 4:-13347541 MsG0480019017.01.T01:five_prime_UTR
AGAATCAATCGATTGTGTGG+TGG 0.597318 4:-13347448 MsG0480019017.01.T01:five_prime_UTR
GGCTGATGAGGGATCGAGCA+GGG 0.598983 4:+13344458 None:intergenic
CTTGAGGCAGCATAGTGCTA+GGG 0.599231 4:+13344047 None:intergenic
TTGATGCCGAAAAGCAATGA+GGG 0.600242 4:-13343790 MsG0480019017.01.T01:CDS
TCCAGTCCAACAAACCAAGA+AGG 0.600527 4:-13343910 MsG0480019017.01.T01:CDS
TCCTGCAACCGGTTGCACCA+CGG 0.601001 4:-13344016 MsG0480019017.01.T01:CDS
TTGGCAGCTGCTAAATGAAG+AGG 0.601943 4:+13347293 None:intergenic
TTAATGTTGGCTGTGATGCA+TGG 0.609200 4:-13345826 MsG0480019017.01.T01:CDS
TGACGAGCAGCAAGGTGCAG+CGG 0.609387 4:+13345339 None:intergenic
ATCAACATACTCACGCGCCA+AGG 0.610169 4:+13343481 None:intergenic
AGCGGAGATGGCCAAACAAG+AGG 0.611353 4:+13344432 None:intergenic
CGTCTGATGACACACGGCAT+GGG 0.614317 4:-13343406 MsG0480019017.01.T01:three_prime_UTR
GATCCTTCCGAATGAGCCAA+TGG 0.614518 4:+13343835 None:intergenic
CTTCATTCCCTATTAGACAA+CGG 0.614895 4:-13345300 MsG0480019017.01.T01:CDS
TGATATTGTCTCGGATTCTG+AGG 0.617221 4:-13344271 MsG0480019017.01.T01:intron
GCACACATTTGATGATCACA+AGG 0.625070 4:+13344078 None:intergenic
AAATGGACAAACTGGTCCCG+TGG 0.640279 4:+13343999 None:intergenic
AGATGGCCAAACAAGAGGTG+CGG 0.640644 4:+13344437 None:intergenic
AAGTATGGTTGAGGATGATG+TGG 0.641266 4:-13347353 MsG0480019017.01.T01:five_prime_UTR
AGCTGCCAATGGTCGGATCG+AGG 0.641596 4:-13347279 MsG0480019017.01.T01:intron
AGCTTCAAATATATTGTCTG+GGG 0.644499 4:-13343155 MsG0480019017.01.T01:three_prime_UTR
GTTGATGCCGAAAAGCAATG+AGG 0.652343 4:-13343791 MsG0480019017.01.T01:CDS
CTCTGCACAGGTTATAACTG+TGG 0.669646 4:-13343203 MsG0480019017.01.T01:three_prime_UTR
TGCGAGCGTCTGATGACACA+CGG 0.673664 4:-13343412 MsG0480019017.01.T01:three_prime_UTR
AATCAATCGATTGTGTGGTG+GGG 0.679849 4:-13347446 MsG0480019017.01.T01:five_prime_UTR
ACATGACACATCCATAGATG+GGG 0.685949 4:+13345461 None:intergenic
GCCGTCTATGACGAGCAGCA+AGG 0.687428 4:+13345331 None:intergenic
GTCAGAATCAATCGATTGTG+TGG 0.691429 4:-13347451 MsG0480019017.01.T01:five_prime_UTR
TACTTGCTATCAGAACGTAG+TGG 0.708760 4:+13344297 None:intergenic
TCATTCCCTATTAGACAACG+GGG 0.780882 4:-13345298 MsG0480019017.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTTAATTTTAAA+TGG - Chr4:13345690-13345709 MsG0480019017.01.T01:intron 0.0%
!! ATTTACTTAAATAATACATA+TGG - Chr4:13343434-13343453 MsG0480019017.01.T01:three_prime_UTR 10.0%
!!! ATTTTTTCTAAAATCTATTT+TGG + Chr4:13344083-13344102 None:intergenic 10.0%
!!! CTTTTTATGTTTTATATTAT+AGG - Chr4:13347506-13347525 MsG0480019017.01.T01:five_prime_UTR 10.0%
!!! TCATTTTCTTAAATTATTAT+CGG - Chr4:13343552-13343571 MsG0480019017.01.T01:three_prime_UTR 10.0%
!! AATTATAATTACTTATTTGC+TGG - Chr4:13346414-13346433 MsG0480019017.01.T01:intron 15.0%
!! GCAATAAAAAATAATAATCA+GGG + Chr4:13347592-13347611 None:intergenic 15.0%
!! GTAAATTATATCAAAAAACT+AGG - Chr4:13345623-13345642 MsG0480019017.01.T01:intron 15.0%
!! TAGTCAAACTATAATTTAAA+AGG + Chr4:13345934-13345953 None:intergenic 15.0%
!! TATATACTTACACTTTATAT+TGG + Chr4:13347071-13347090 None:intergenic 15.0%
!! TGCAATAAAAAATAATAATC+AGG + Chr4:13347593-13347612 None:intergenic 15.0%
!!! AAAAGTAAGTTGAAAATTAA+TGG + Chr4:13347247-13347266 None:intergenic 15.0%
!!! AAAGTAAGTTGAAAATTAAT+GGG + Chr4:13347246-13347265 None:intergenic 15.0%
!!! ACTTCTAAATAATAGTTTTA+TGG + Chr4:13344367-13344386 None:intergenic 15.0%
!!! GATTTTGAAAAAATTACATT+TGG - Chr4:13343959-13343978 MsG0480019017.01.T01:CDS 15.0%
!!! TATAGGTTTAAATATGTTTT+TGG - Chr4:13347523-13347542 MsG0480019017.01.T01:five_prime_UTR 15.0%
!!! TTAATTTTCAACTTACTTTT+TGG - Chr4:13347247-13347266 MsG0480019017.01.T01:intron 15.0%
!! AATCATAGATTCTAAATCAA+TGG - Chr4:13345592-13345611 MsG0480019017.01.T01:intron 20.0%
!! ACCAATTATCAAAAAATCAA+AGG + Chr4:13346356-13346375 None:intergenic 20.0%
!! ACTTAAATAATACATATGGT+GGG - Chr4:13343438-13343457 MsG0480019017.01.T01:three_prime_UTR 20.0%
!! ATTATATCAAAAAACTAGGA+AGG - Chr4:13345627-13345646 MsG0480019017.01.T01:intron 20.0%
!! TACTTAAATAATACATATGG+TGG - Chr4:13343437-13343456 MsG0480019017.01.T01:three_prime_UTR 20.0%
!! TTCAAATAATATGCTACTAT+AGG + Chr4:13346912-13346931 None:intergenic 20.0%
!! TTGATTAAATTGAGTTTGAA+AGG + Chr4:13344255-13344274 None:intergenic 20.0%
!! TTTGAAAAAATTACATTTGG+AGG - Chr4:13343962-13343981 MsG0480019017.01.T01:CDS 20.0%
!! TTTGATATAATTTACACATG+TGG + Chr4:13345618-13345637 None:intergenic 20.0%
!!! ACAAGAGTTAAATTTTACTA+AGG + Chr4:13346045-13346064 None:intergenic 20.0%
!!! ATAATTTGCTTTTAAAATGC+CGG + Chr4:13345668-13345687 None:intergenic 20.0%
!!! GAACTTTTTATGACTATATT+TGG - Chr4:13343647-13343666 MsG0480019017.01.T01:three_prime_UTR 20.0%
!!! TCATATTAAACGCATTTTAA+GGG - Chr4:13344864-13344883 MsG0480019017.01.T01:intron 20.0%
!!! TCCTTTGATTTTTTGATAAT+TGG - Chr4:13346352-13346371 MsG0480019017.01.T01:intron 20.0%
!!! TTTTAAGGGTAAAATTTAGT+TGG - Chr4:13344878-13344897 MsG0480019017.01.T01:intron 20.0%
! AAAGCTTCAAATATATTGTC+TGG - Chr4:13347433-13347452 MsG0480019017.01.T01:five_prime_UTR 25.0%
! AAGCTTCAAATATATTGTCT+GGG - Chr4:13347434-13347453 MsG0480019017.01.T01:five_prime_UTR 25.0%
! AAGTATGAAATACCAAATAG+AGG + Chr4:13345842-13345861 None:intergenic 25.0%
! AATCTATTCAACTGAAGAAT+TGG - Chr4:13347301-13347320 MsG0480019017.01.T01:five_prime_UTR 25.0%
! AGAAACATATGTTTACTTAC+CGG + Chr4:13345543-13345562 None:intergenic 25.0%
! ATTGGTATTTCAAAGTTTAG+TGG - Chr4:13347319-13347338 MsG0480019017.01.T01:five_prime_UTR 25.0%
! CAAGCAATATAACAAAAAGT+AGG + Chr4:13347562-13347581 None:intergenic 25.0%
! TAAATGTATCTTTGGATTGA+AGG - Chr4:13343922-13343941 MsG0480019017.01.T01:CDS 25.0%
! TCTAGAGACTCAAAAAAAAA+GGG + Chr4:13344739-13344758 None:intergenic 25.0%
! TGTAAGTATATATGAGATGA+AGG - Chr4:13347079-13347098 MsG0480019017.01.T01:intron 25.0%
! TGTTAATCTTAGACGAAAAT+TGG - Chr4:13345368-13345387 MsG0480019017.01.T01:intron 25.0%
!! CTCATATTAAACGCATTTTA+AGG - Chr4:13344863-13344882 MsG0480019017.01.T01:intron 25.0%
!!! AAAGCTAATTTTGGTCATTT+TGG - Chr4:13343795-13343814 MsG0480019017.01.T01:CDS 25.0%
!!! ATTAACTTTCTTTTCAAGTG+TGG - Chr4:13343821-13343840 MsG0480019017.01.T01:CDS 25.0%
!!! CAATATATTTTTCAACTCAC+AGG + Chr4:13347473-13347492 None:intergenic 25.0%
!!! CAGATGTTTTTTTGCTTTAA+AGG - Chr4:13344104-13344123 MsG0480019017.01.T01:CDS 25.0%
!!! GGTTGAAAAGTTATTTTTAG+TGG - Chr4:13343842-13343861 MsG0480019017.01.T01:CDS 25.0%
!!! TTTTTTATTGCATTCATCAG+AGG - Chr4:13347601-13347620 MsG0480019017.01.T01:five_prime_UTR 25.0%
AAGGTTTCATGATTAATTGC+CGG - Chr4:13345646-13345665 MsG0480019017.01.T01:intron 30.0%
AATCACCATTCATATGTCAT+TGG + Chr4:13346866-13346885 None:intergenic 30.0%
ACATAACCAACATATCTATC+AGG + Chr4:13343528-13343547 None:intergenic 30.0%
AGAAAATCAAATTTCAGCGA+AGG - Chr4:13346706-13346725 MsG0480019017.01.T01:intron 30.0%
AGCTTCAAATATATTGTCTG+GGG - Chr4:13347435-13347454 MsG0480019017.01.T01:five_prime_UTR 30.0%
AGGTATGTCATTCCTTTAAT+AGG + Chr4:13346267-13346286 None:intergenic 30.0%
ATAAACATGAAGATGCACAA+AGG + Chr4:13344516-13344535 None:intergenic 30.0%
ATCCATTAAAGAGAGGAAAT+GGG - Chr4:13343117-13343136 MsG0480019017.01.T01:three_prime_UTR 30.0%
ATGTTGATGTTCAAATCTCT+TGG - Chr4:13347124-13347143 MsG0480019017.01.T01:intron 30.0%
ATTGATGAGTTTATTCAGAG+TGG - Chr4:13343896-13343915 MsG0480019017.01.T01:CDS 30.0%
CAAGTATGATGATATTGTCT+CGG - Chr4:13346310-13346329 MsG0480019017.01.T01:intron 30.0%
CATAACCAACATATCTATCA+GGG + Chr4:13343527-13343546 None:intergenic 30.0%
CATGTGAGAACATACAAATA+CGG - Chr4:13345147-13345166 MsG0480019017.01.T01:intron 30.0%
CTAGATTTGTGAACATAAGA+TGG - Chr4:13345215-13345234 MsG0480019017.01.T01:intron 30.0%
CTTGTGTAAATATTCTTTGC+AGG - Chr4:13346060-13346079 MsG0480019017.01.T01:intron 30.0%
GAAAATCAAATTTCAGCGAA+GGG - Chr4:13346707-13346726 MsG0480019017.01.T01:intron 30.0%
GATGGAAATTGTTGAAAGTA+TGG - Chr4:13343222-13343241 MsG0480019017.01.T01:three_prime_UTR 30.0%
GGAAATAAGCAGTTAAGTAT+TGG + Chr4:13342987-13343006 None:intergenic 30.0%
GGTATGTCATTCCTTTAATA+GGG + Chr4:13346266-13346285 None:intergenic 30.0%
GTCTAGAGACTCAAAAAAAA+AGG + Chr4:13344740-13344759 None:intergenic 30.0%
TAAACATGAAGATGCACAAA+GGG + Chr4:13344515-13344534 None:intergenic 30.0%
TACTTCTTTGAACCTCTATT+TGG - Chr4:13345827-13345846 MsG0480019017.01.T01:CDS 30.0%
TAGCCTTTAATGAATCTACA+TGG + Chr4:13345049-13345068 None:intergenic 30.0%
TCTCTTATAGGAAAGCAATA+TGG - Chr4:13346442-13346461 MsG0480019017.01.T01:intron 30.0%
TCTTCATTAAGACTGATCAA+AGG - Chr4:13345403-13345422 MsG0480019017.01.T01:intron 30.0%
TCTTGGCAACATTTAATTGA+AGG + Chr4:13346631-13346650 None:intergenic 30.0%
TTGAATAGATTGACAAGTTC+CGG + Chr4:13347292-13347311 None:intergenic 30.0%
TTGTGAACATAAGATGGAAA+TGG - Chr4:13345221-13345240 MsG0480019017.01.T01:intron 30.0%
! AAGAAAGTGCAGAAATTACA+AGG + Chr4:13344675-13344694 None:intergenic 30.0%
! AAGTTGAAAATTAATGGGTC+TGG + Chr4:13347241-13347260 None:intergenic 30.0%
! AATTGTTGAAAGTATGGTTG+AGG - Chr4:13343228-13343247 MsG0480019017.01.T01:three_prime_UTR 30.0%
! GAGTTGACTAAAGCTAATTT+TGG - Chr4:13343786-13343805 MsG0480019017.01.T01:CDS 30.0%
!! TTGCTGGTTATTTCTCTTAT+AGG - Chr4:13346430-13346449 MsG0480019017.01.T01:intron 30.0%
!! TTTATCTTTGTCATTGACTC+TGG - Chr4:13344531-13344550 MsG0480019017.01.T01:intron 30.0%
!! TTTCTATACGCATTTCTAGT+TGG - Chr4:13344644-13344663 MsG0480019017.01.T01:intron 30.0%
!! TTTGATTTTCTTGACCTTCT+TGG + Chr4:13346697-13346716 None:intergenic 30.0%
!! TTTTTGGTAATTTGGTTGGT+TGG + Chr4:13343023-13343042 None:intergenic 30.0%
!!! ATTTGGATAGTTTTTAGCTC+AGG - Chr4:13343664-13343683 MsG0480019017.01.T01:three_prime_UTR 30.0%
!!! GTGTTTTTTGGTAATTTGGT+TGG + Chr4:13343027-13343046 None:intergenic 30.0%
!!! TGACACTACATGCTATTTTT+GGG - Chr4:13345796-13345815 MsG0480019017.01.T01:CDS 30.0%
!!! TTGACACTACATGCTATTTT+TGG - Chr4:13345795-13345814 MsG0480019017.01.T01:CDS 30.0%
AAACTAAACAAACACACGCT+TGG + Chr4:13344026-13344045 None:intergenic 35.0%
AACATATGTTTACTTACCGG+AGG + Chr4:13345540-13345559 None:intergenic 35.0%
ACTAAACAAGAATCTGCAAC+AGG + Chr4:13345095-13345114 None:intergenic 35.0%
AGTCTTTGTAATCCGGTTAT+CGG - Chr4:13347011-13347030 MsG0480019017.01.T01:intron 35.0%
ATCACTATCAGTCTTGATCT+TGG + Chr4:13346648-13346667 None:intergenic 35.0%
ATGGAAAAGCTTATTCAAGC+TGG - Chr4:13344800-13344819 MsG0480019017.01.T01:intron 35.0%
ATGTATCTTTGGATTGAAGG+TGG - Chr4:13343925-13343944 MsG0480019017.01.T01:CDS 35.0%
CTGTTTGAGTCTTTGTAATC+CGG - Chr4:13347004-13347023 MsG0480019017.01.T01:intron 35.0%
CTTCATTCCCTATTAGACAA+CGG - Chr4:13345290-13345309 MsG0480019017.01.T01:CDS 35.0%
CTTGTTGATCCATTAAAGAG+AGG - Chr4:13343110-13343129 MsG0480019017.01.T01:three_prime_UTR 35.0%
CTTGTTTAGTCACTCTTTCA+TGG - Chr4:13345105-13345124 MsG0480019017.01.T01:intron 35.0%
GAATGATCTTAGTGATCGTT+CGG + Chr4:13346952-13346971 None:intergenic 35.0%
GATCCATTAAAGAGAGGAAA+TGG - Chr4:13343116-13343135 MsG0480019017.01.T01:three_prime_UTR 35.0%
GCATTAATAACAAGTGTGCA+TGG + Chr4:13344328-13344347 None:intergenic 35.0%
GGCAACATTTAATTGAAGGA+TGG + Chr4:13346627-13346646 None:intergenic 35.0%
GTCAAAATCATTGAACGGTT+TGG + Chr4:13345185-13345204 None:intergenic 35.0%
GTTAGTGGTTAACTCAATCA+AGG - Chr4:13344936-13344955 MsG0480019017.01.T01:intron 35.0%
GTTGAGAAGTTTACAGAAAG+TGG - Chr4:13344432-13344451 MsG0480019017.01.T01:CDS 35.0%
TGAAAGGAATGACTTACGTT+TGG + Chr4:13344239-13344258 None:intergenic 35.0%
TGAATAGATTGACAAGTTCC+GGG + Chr4:13347291-13347310 None:intergenic 35.0%
TGAGAACATACAAATACGGA+TGG - Chr4:13345151-13345170 MsG0480019017.01.T01:intron 35.0%
TGCTTCCAATGACATATGAA+TGG - Chr4:13346858-13346877 MsG0480019017.01.T01:intron 35.0%
TGGCCATGTAGATTCATTAA+AGG - Chr4:13345043-13345062 MsG0480019017.01.T01:intron 35.0%
TTACATTTGGAGGTTCAATG+AGG - Chr4:13343972-13343991 MsG0480019017.01.T01:CDS 35.0%
TTAGGTGCTTTCAATGTTGT+TGG - Chr4:13344554-13344573 MsG0480019017.01.T01:intron 35.0%
TTCATTCCCTATTAGACAAC+GGG - Chr4:13345291-13345310 MsG0480019017.01.T01:CDS 35.0%
TTCTTAAGAGCAACTGTGAA+CGG + Chr4:13346092-13346111 None:intergenic 35.0%
! CGTGTGTTTGTTTAGTTTCA+TGG - Chr4:13344028-13344047 MsG0480019017.01.T01:CDS 35.0%
! CTCTCTTTAATGGATCAACA+AGG + Chr4:13343112-13343131 None:intergenic 35.0%
! TAAGTCTTGATGATTGCTGA+TGG - Chr4:13346829-13346848 MsG0480019017.01.T01:intron 35.0%
! TTGCACTATGCTGCTTATTA+TGG - Chr4:13345023-13345042 MsG0480019017.01.T01:intron 35.0%
!! AACCGTTCAATGATTTTGAC+AGG - Chr4:13345185-13345204 MsG0480019017.01.T01:intron 35.0%
!! ACCGTTCAATGATTTTGACA+GGG - Chr4:13345186-13345205 MsG0480019017.01.T01:intron 35.0%
!! ACTTCTGATTAAAGAGTGTC+TGG - Chr4:13343475-13343494 MsG0480019017.01.T01:three_prime_UTR 35.0%
!! AGAAATCCCTCATTGCTTTT+CGG + Chr4:13346809-13346828 None:intergenic 35.0%
!! AGTGGCTCTAAATGTATCTT+TGG - Chr4:13343914-13343933 MsG0480019017.01.T01:CDS 35.0%
!! ATTGTGTTGATGATGGTTAG+TGG - Chr4:13344921-13344940 MsG0480019017.01.T01:intron 35.0%
!! TAGTAAGGCGTTTTCCAATA+AGG + Chr4:13346219-13346238 None:intergenic 35.0%
!! TCATAGAGAAGTGTTTGTGA+TGG - Chr4:13343616-13343635 MsG0480019017.01.T01:three_prime_UTR 35.0%
!!! GAGATGAAGGTATTTTTCCT+TGG - Chr4:13347092-13347111 MsG0480019017.01.T01:intron 35.0%
AACTGCCCTGATAGATATGT+TGG - Chr4:13343519-13343538 MsG0480019017.01.T01:three_prime_UTR 40.0%
AACTGTGGCTGAGTAATGAT+AGG - Chr4:13347402-13347421 MsG0480019017.01.T01:five_prime_UTR 40.0%
AAGCTAACAGGAGAGAGAAA+AGG - Chr4:13346240-13346259 MsG0480019017.01.T01:intron 40.0%
AAGTATGGTTGAGGATGATG+TGG - Chr4:13343237-13343256 MsG0480019017.01.T01:three_prime_UTR 40.0%
AATAGTGTGTTTGCTTCTGC+TGG - Chr4:13343187-13343206 MsG0480019017.01.T01:three_prime_UTR 40.0%
AATCAATCGATTGTGTGGTG+GGG - Chr4:13343144-13343163 MsG0480019017.01.T01:three_prime_UTR 40.0%
ACATGACACATCCATAGATG+GGG + Chr4:13345132-13345151 None:intergenic 40.0%
ACTTTGATTGAAGACGTGTC+TGG - Chr4:13343352-13343371 MsG0480019017.01.T01:three_prime_UTR 40.0%
AGAATCAATCGATTGTGTGG+TGG - Chr4:13343142-13343161 MsG0480019017.01.T01:three_prime_UTR 40.0%
AGGACATTATGCAGATTTCC+TGG - Chr4:13345423-13345442 MsG0480019017.01.T01:intron 40.0%
AGGCTTCAATTAGATTCCTC+CGG - Chr4:13345521-13345540 MsG0480019017.01.T01:CDS 40.0%
CACATGACACATCCATAGAT+GGG + Chr4:13345133-13345152 None:intergenic 40.0%
CATAGACACACACCTGTTTA+TGG + Chr4:13344611-13344630 None:intergenic 40.0%
CCCCTGTCAAAATCATTGAA+CGG + Chr4:13345190-13345209 None:intergenic 40.0%
CGTTGTCTAATAGGGAATGA+AGG + Chr4:13345292-13345311 None:intergenic 40.0%
CTGGTGTTCCATATGTATCA+GGG - Chr4:13343371-13343390 MsG0480019017.01.T01:three_prime_UTR 40.0%
GAATCAATCGATTGTGTGGT+GGG - Chr4:13343143-13343162 MsG0480019017.01.T01:three_prime_UTR 40.0%
GACCCATTTCCTCTCTTTAA+TGG + Chr4:13343122-13343141 None:intergenic 40.0%
GAGAGAAAAGGCCCTATTAA+AGG - Chr4:13346252-13346271 MsG0480019017.01.T01:intron 40.0%
GGCACAACAAGAATCAGAAT+TGG + Chr4:13344718-13344737 None:intergenic 40.0%
GTCAAAGTTCAACCGATAAC+CGG + Chr4:13347026-13347045 None:intergenic 40.0%
GTCAGAATCAATCGATTGTG+TGG - Chr4:13343139-13343158 MsG0480019017.01.T01:three_prime_UTR 40.0%
GTCTGGTGTTCCATATATCA+GGG - Chr4:13343492-13343511 MsG0480019017.01.T01:three_prime_UTR 40.0%
TCACATGACACATCCATAGA+TGG + Chr4:13345134-13345153 None:intergenic 40.0%
TCATTCCCTATTAGACAACG+GGG - Chr4:13345292-13345311 MsG0480019017.01.T01:CDS 40.0%
TCCATGATTCATTTGCAACC+CGG - Chr4:13347270-13347289 MsG0480019017.01.T01:intron 40.0%
TCTCTAGACACCGTTAATGT+TGG - Chr4:13344751-13344770 MsG0480019017.01.T01:intron 40.0%
TCTGGTGTTCCATATGTATC+AGG - Chr4:13343370-13343389 MsG0480019017.01.T01:three_prime_UTR 40.0%
TGATATTGTCTCGGATTCTG+AGG - Chr4:13346319-13346338 MsG0480019017.01.T01:intron 40.0%
TGCATCACAGCCAACATTAA+CGG + Chr4:13344764-13344783 None:intergenic 40.0%
TGCTTTCAATGTTGTTGGAC+CGG - Chr4:13344559-13344578 MsG0480019017.01.T01:intron 40.0%
TGTCTGGTGTTCCATATATC+AGG - Chr4:13343491-13343510 MsG0480019017.01.T01:three_prime_UTR 40.0%
TGTCTTGAATCGCCATAAAC+AGG - Chr4:13344596-13344615 MsG0480019017.01.T01:intron 40.0%
TTAGTGATCGTTCGGACAAT+GGG + Chr4:13346944-13346963 None:intergenic 40.0%
TTCAAGAGTTTGTCAGCCAT+TGG - Chr4:13346739-13346758 MsG0480019017.01.T01:intron 40.0%
TTGATGCCGAAAAGCAATGA+GGG - Chr4:13346800-13346819 MsG0480019017.01.T01:intron 40.0%
TTGGAGGTTCAATGAGGTAA+TGG - Chr4:13343978-13343997 MsG0480019017.01.T01:CDS 40.0%
TTTGCTTCTGCTGGTGTAAT+GGG - Chr4:13343196-13343215 MsG0480019017.01.T01:three_prime_UTR 40.0%
! GCACACATTTGATGATCACA+AGG + Chr4:13346515-13346534 None:intergenic 40.0%
! TCTCCTGTTAGCTTCTAGTA+AGG + Chr4:13346234-13346253 None:intergenic 40.0%
! TGTAGCGATTGTGTTGATGA+TGG - Chr4:13344914-13344933 MsG0480019017.01.T01:intron 40.0%
! TTAATGTTGGCTGTGATGCA+TGG - Chr4:13344764-13344783 MsG0480019017.01.T01:intron 40.0%
! TTGAGGATGATGTGGTGTTT+TGG - Chr4:13343245-13343264 MsG0480019017.01.T01:three_prime_UTR 40.0%
!! AGACATCGACTTTGACATTC+CGG + Chr4:13344581-13344600 None:intergenic 40.0%
!! AGAGAAGTGTTTGTGATGGT+TGG - Chr4:13343620-13343639 MsG0480019017.01.T01:three_prime_UTR 40.0%
!! CCGTTCAATGATTTTGACAG+GGG - Chr4:13345187-13345206 MsG0480019017.01.T01:intron 40.0%
!! CGTTCAATGATTTTGACAGG+GGG - Chr4:13345188-13345207 MsG0480019017.01.T01:intron 40.0%
!! CTCTTTAATCAGAAGTGTCG+AGG + Chr4:13343471-13343490 None:intergenic 40.0%
!! CTTTGTCATTGACTCTGGTT+AGG - Chr4:13344536-13344555 MsG0480019017.01.T01:intron 40.0%
!! GGTGTTTTGGATAGTACTGT+TGG - Chr4:13343258-13343277 MsG0480019017.01.T01:three_prime_UTR 40.0%
!! TACTTGCTATCAGAACGTAG+TGG + Chr4:13346296-13346315 None:intergenic 40.0%
!! TCTTGACCTTCTTGGTTTGT+TGG + Chr4:13346689-13346708 None:intergenic 40.0%
!! TGGTGATTTTACACTTGCTG+TGG - Chr4:13346878-13346897 MsG0480019017.01.T01:intron 40.0%
!! TTACAGAAAGTGGCTCTAAG+CGG - Chr4:13344442-13344461 MsG0480019017.01.T01:CDS 40.0%
!! TTTTTAGTGGCTGTATAGCG+TGG - Chr4:13343855-13343874 MsG0480019017.01.T01:CDS 40.0%
!!! GCGGGTGTTTTTTGGTAATT+TGG + Chr4:13343031-13343050 None:intergenic 40.0%
AAACAAACACACGCTTGGAC+TGG + Chr4:13344021-13344040 None:intergenic 45.0%
AAGAGCCCCGTTGTCTAATA+GGG + Chr4:13345300-13345319 None:intergenic 45.0%
ACCAACATATGTACCAGTGC+CGG + Chr4:13343403-13343422 None:intergenic 45.0%
ACGCCTTACTAGAAGCTAAC+AGG - Chr4:13346228-13346247 MsG0480019017.01.T01:intron 45.0%
AGCTCGCTGATGAACTTTAG+CGG + Chr4:13346179-13346198 None:intergenic 45.0%
ATAAGCAGCATAGTGCAAGC+AGG + Chr4:13345021-13345040 None:intergenic 45.0%
ATTTAGCAGCTGCCAATGGT+CGG - Chr4:13343304-13343323 MsG0480019017.01.T01:three_prime_UTR 45.0%
CCTCGACAAAATGGACAAAC+TGG + Chr4:13346602-13346621 None:intergenic 45.0%
CGATTATTACCCGTATCCAC+CGG + Chr4:13345336-13345355 None:intergenic 45.0%
CTCTGCACAGGTTATAACTG+TGG - Chr4:13347387-13347406 MsG0480019017.01.T01:five_prime_UTR 45.0%
CTGATGAACTTTAGCGGAGA+TGG + Chr4:13346173-13346192 None:intergenic 45.0%
CTTAGTGATCGTTCGGACAA+TGG + Chr4:13346945-13346964 None:intergenic 45.0%
CTTCATTTAGCAGCTGCCAA+TGG - Chr4:13343300-13343319 MsG0480019017.01.T01:three_prime_UTR 45.0%
GGTGTTCCATATATCAGGGT+CGG - Chr4:13343496-13343515 MsG0480019017.01.T01:three_prime_UTR 45.0%
GTTGATGCCGAAAAGCAATG+AGG - Chr4:13346799-13346818 MsG0480019017.01.T01:intron 45.0%
GTTGCTTAGATACTCTGCAC+AGG - Chr4:13347375-13347394 MsG0480019017.01.T01:five_prime_UTR 45.0%
GTTTGCTTCTGCTGGTGTAA+TGG - Chr4:13343195-13343214 MsG0480019017.01.T01:three_prime_UTR 45.0%
TCCAGTCCAACAAACCAAGA+AGG - Chr4:13346680-13346699 MsG0480019017.01.T01:intron 45.0%
TCCGGGTTGCAAATGAATCA+TGG + Chr4:13347274-13347293 None:intergenic 45.0%
TCTTTCATGGTCCCCATCTA+TGG - Chr4:13345118-13345137 MsG0480019017.01.T01:intron 45.0%
TGACCTCAATTGTGCACACT+TGG + Chr4:13346490-13346509 None:intergenic 45.0%
TTGGCAGCTGCTAAATGAAG+AGG + Chr4:13343300-13343319 None:intergenic 45.0%
TTGGTTGGACTGAAGAAGTC+AGG + Chr4:13343008-13343027 None:intergenic 45.0%
! CCAGTTTGTCCATTTTGTCG+AGG - Chr4:13346599-13346618 MsG0480019017.01.T01:intron 45.0%
! GCTCTTGTTTGTGCTTCAAC+CGG - Chr4:13345314-13345333 MsG0480019017.01.T01:CDS 45.0%
! TCAAGAAGCCAAGGCCTTAT+TGG - Chr4:13346202-13346221 MsG0480019017.01.T01:intron 45.0%
! TCAGAACGTAGTGGAGATGA+AGG + Chr4:13346287-13346306 None:intergenic 45.0%
!! ACCTTCTTGGTTTGTTGGAC+TGG + Chr4:13346684-13346703 None:intergenic 45.0%
!! GCGGTTTGGAGTTAAGCTTT+TGG - Chr4:13344461-13344480 MsG0480019017.01.T01:CDS 45.0%
!! TTGTCAGCCATTGGCTCATT+CGG - Chr4:13346748-13346767 MsG0480019017.01.T01:intron 45.0%
AAATGGACAAACTGGTCCCG+TGG + Chr4:13346594-13346613 None:intergenic 50.0%
AACTACCTCGATCCGACCAT+TGG + Chr4:13343319-13343338 None:intergenic 50.0%
AAGAAGCCTGATCCTGCAAC+CGG - Chr4:13346563-13346582 MsG0480019017.01.T01:intron 50.0%
ACCTTGCTGCTCGTCATAGA+CGG - Chr4:13345258-13345277 MsG0480019017.01.T01:intron 50.0%
AGATGGCCAAACAAGAGGTG+CGG + Chr4:13346156-13346175 None:intergenic 50.0%
AGGATCGCTAGTCGCAATTC+AGG - Chr4:13346772-13346791 MsG0480019017.01.T01:intron 50.0%
AGGATGGCACCTCGACAAAA+TGG + Chr4:13346611-13346630 None:intergenic 50.0%
ATATGTATCAGGGTCGCGAC+CGG - Chr4:13343381-13343400 MsG0480019017.01.T01:three_prime_UTR 50.0%
ATCAACATACTCACGCGCCA+AGG + Chr4:13347112-13347131 None:intergenic 50.0%
CAACAAGGCACGTGAAGAAG+TGG + Chr4:13343097-13343116 None:intergenic 50.0%
CAAGAGCCCCGTTGTCTAAT+AGG + Chr4:13345301-13345320 None:intergenic 50.0%
CATATGTAGCGGTGTCTTCC+AGG + Chr4:13345444-13345463 None:intergenic 50.0%
CGACCAAGTGTGCACAATTG+AGG - Chr4:13346484-13346503 MsG0480019017.01.T01:intron 50.0%
CGAGCTCAATCAAGAAGCCA+AGG - Chr4:13346193-13346212 MsG0480019017.01.T01:intron 50.0%
CGCTAGTCGCAATTCAGGAA+AGG - Chr4:13346777-13346796 MsG0480019017.01.T01:intron 50.0%
CTGGAAGACACCGCTACATA+TGG - Chr4:13345442-13345461 MsG0480019017.01.T01:intron 50.0%
CTTGAGGCAGCATAGTGCTA+GGG + Chr4:13346546-13346565 None:intergenic 50.0%
CTTGTTTGTGCTTCAACCGG+TGG - Chr4:13345317-13345336 MsG0480019017.01.T01:CDS 50.0%
GAAGACACCGCTACATATGG+CGG - Chr4:13345445-13345464 MsG0480019017.01.T01:intron 50.0%
GATCCTTCCGAATGAGCCAA+TGG + Chr4:13346758-13346777 None:intergenic 50.0%
GCAGTTCCGACCCTGATATA+TGG + Chr4:13343505-13343524 None:intergenic 50.0%
GCTGTGATGCATGGAAAGAC+TGG - Chr4:13344773-13344792 MsG0480019017.01.T01:intron 50.0%
TCTTGAGGCAGCATAGTGCT+AGG + Chr4:13346547-13346566 None:intergenic 50.0%
TGTGCTTCAACCGGTGGATA+CGG - Chr4:13345323-13345342 MsG0480019017.01.T01:CDS 50.0%
TTGCAGGATCAGGCTTCTTG+AGG + Chr4:13346562-13346581 None:intergenic 50.0%
! GCATGGAAAGACTGGTTGCA+TGG - Chr4:13344781-13344800 MsG0480019017.01.T01:intron 50.0%
! GGCGTTTTCCAATAAGGCCT+TGG + Chr4:13346213-13346232 None:intergenic 50.0%
!! ACCGGCACTGGTACATATGT+TGG - Chr4:13343399-13343418 MsG0480019017.01.T01:three_prime_UTR 50.0%
!! GAAAGTGGCTCTAAGCGGTT+TGG - Chr4:13344447-13344466 MsG0480019017.01.T01:CDS 50.0%
!! TGCTGGTGTAATGGGTGAGA+TGG - Chr4:13343204-13343223 MsG0480019017.01.T01:three_prime_UTR 50.0%
AGCGGAGATGGCCAAACAAG+AGG + Chr4:13346161-13346180 None:intergenic 55.0%
CATCAGCCGCACCTCTTGTT+TGG - Chr4:13346147-13346166 MsG0480019017.01.T01:intron 55.0%
CGTCTGATGACACACGGCAT+GGG - Chr4:13347184-13347203 MsG0480019017.01.T01:intron 55.0%
GACGCTCGCAGCTTGAATGA+AGG + Chr4:13347168-13347187 None:intergenic 55.0%
GCACGTGAAGAAGTGGTTGC+CGG + Chr4:13343090-13343109 None:intergenic 55.0%
GGTCGCGACCCTGATACATA+TGG + Chr4:13343382-13343401 None:intergenic 55.0%
GTGCTTCAACCGGTGGATAC+GGG - Chr4:13345324-13345343 MsG0480019017.01.T01:CDS 55.0%
TGCGAGCGTCTGATGACACA+CGG - Chr4:13347178-13347197 MsG0480019017.01.T01:intron 55.0%
TGCTTGCTTGGGGAGCAGAT+AGG - Chr4:13345501-13345520 MsG0480019017.01.T01:CDS 55.0%
! AACAAGAGGTGCGGCTGATG+AGG + Chr4:13346147-13346166 None:intergenic 55.0%
! ACAAGAGGTGCGGCTGATGA+GGG + Chr4:13346146-13346165 None:intergenic 55.0%
! CAAACACACGCTTGGACTGG+CGG + Chr4:13344018-13344037 None:intergenic 55.0%
! GTGGTTCTGTGGACTGTGTC+CGG - Chr4:13345474-13345493 MsG0480019017.01.T01:CDS 55.0%
! TGTCCGGATGCTGCTTGCTT+GGG - Chr4:13345490-13345509 MsG0480019017.01.T01:CDS 55.0%
!! CAGCCATTGGCTCATTCGGA+AGG - Chr4:13346752-13346771 MsG0480019017.01.T01:intron 55.0%
!! GCTTGGACTGGCGGAAATCA+CGG + Chr4:13344009-13344028 None:intergenic 55.0%
AACTGGTCCCGTGGTGCAAC+CGG + Chr4:13346585-13346604 None:intergenic 60.0%
AGCTGCCAATGGTCGGATCG+AGG - Chr4:13343311-13343330 MsG0480019017.01.T01:three_prime_UTR 60.0%
CCACGAGCCGCCATATGTAG+CGG + Chr4:13345455-13345474 None:intergenic 60.0%
CTACATATGGCGGCTCGTGG+TGG - Chr4:13345455-13345474 MsG0480019017.01.T01:intron 60.0%
CTCCCCAAGCAAGCAGCATC+CGG + Chr4:13345496-13345515 None:intergenic 60.0%
GCCGTCTATGACGAGCAGCA+AGG + Chr4:13345262-13345281 None:intergenic 60.0%
GCGTCTGATGACACACGGCA+TGG - Chr4:13347183-13347202 MsG0480019017.01.T01:intron 60.0%
GGCTGATGAGGGATCGAGCA+GGG + Chr4:13346135-13346154 None:intergenic 60.0%
GTGCAACCGGTTGCAGGATC+AGG + Chr4:13346572-13346591 None:intergenic 60.0%
TCCTCACGCGCCGCCTTATA+CGG + Chr4:13343062-13343081 None:intergenic 60.0%
TCCTGCAACCGGTTGCACCA+CGG - Chr4:13346574-13346593 MsG0480019017.01.T01:intron 60.0%
TGACGAGCAGCAAGGTGCAG+CGG + Chr4:13345254-13345273 None:intergenic 60.0%
! GTCCGGATGCTGCTTGCTTG+GGG - Chr4:13345491-13345510 MsG0480019017.01.T01:CDS 60.0%
! GTGTCCGGATGCTGCTTGCT+TGG - Chr4:13345489-13345508 MsG0480019017.01.T01:CDS 60.0%
!!! CGGTGGACGCGGGTGTTTTT+TGG + Chr4:13343039-13343058 None:intergenic 60.0%
CCGCTACATATGGCGGCTCG+TGG - Chr4:13345452-13345471 MsG0480019017.01.T01:intron 65.0%
CCTGCAACCGGTTGCACCAC+GGG - Chr4:13346575-13346594 MsG0480019017.01.T01:intron 65.0%
CCTTATACGGCGGTGGACGC+GGG + Chr4:13343049-13343068 None:intergenic 65.0%
CGGCTGATGAGGGATCGAGC+AGG + Chr4:13346136-13346155 None:intergenic 65.0%
GCCTTATACGGCGGTGGACG+CGG + Chr4:13343050-13343069 None:intergenic 65.0%
GCGGCGCGTGAGGAAGTTTC+CGG - Chr4:13343068-13343087 MsG0480019017.01.T01:three_prime_UTR 65.0%
GCGTCCACCGCCGTATAAGG+CGG - Chr4:13343049-13343068 MsG0480019017.01.T01:three_prime_UTR 65.0%
TCACGCGCCGCCTTATACGG+CGG + Chr4:13343059-13343078 None:intergenic 65.0%
AGCAGCAAGGTGCAGCGGCG+TGG + Chr4:13345249-13345268 None:intergenic 70.0%
ATCAGGGTCGCGACCGGCAC+TGG - Chr4:13343387-13343406 MsG0480019017.01.T01:three_prime_UTR 70.0%
CCCGCGTCCACCGCCGTATA+AGG - Chr4:13343046-13343065 MsG0480019017.01.T01:three_prime_UTR 70.0%
CCCGTGGTGCAACCGGTTGC+AGG + Chr4:13346578-13346597 None:intergenic 70.0%
GCCGTATAAGGCGGCGCGTG+AGG - Chr4:13343058-13343077 MsG0480019017.01.T01:three_prime_UTR 70.0%
! GGCGGCTCGTGGTGGTTCTG+TGG - Chr4:13345463-13345482 MsG0480019017.01.T01:CDS 70.0%
CGCGCCGCCTTATACGGCGG+TGG + Chr4:13343056-13343075 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 13342984 13347628 13342984 ID=MsG0480019017.01;Name=MsG0480019017.01
Chr4 mRNA 13342984 13347628 13342984 ID=MsG0480019017.01.T01;Parent=MsG0480019017.01;Name=MsG0480019017.01.T01;_AED=0.31;_eAED=0.31;_QI=358|0.42|0.37|1|0.57|0.75|8|790|296
Chr4 exon 13342984 13344160 13342984 ID=MsG0480019017.01.T01:exon:8365;Parent=MsG0480019017.01.T01
Chr4 exon 13344272 13344338 13344272 ID=MsG0480019017.01.T01:exon:8364;Parent=MsG0480019017.01.T01
Chr4 exon 13344429 13344530 13344429 ID=MsG0480019017.01.T01:exon:8363;Parent=MsG0480019017.01.T01
Chr4 exon 13345267 13345378 13345267 ID=MsG0480019017.01.T01:exon:8362;Parent=MsG0480019017.01.T01
Chr4 exon 13345463 13345558 13345463 ID=MsG0480019017.01.T01:exon:8361;Parent=MsG0480019017.01.T01
Chr4 exon 13345779 13345854 13345779 ID=MsG0480019017.01.T01:exon:8360;Parent=MsG0480019017.01.T01
Chr4 exon 13345995 13346054 13345995 ID=MsG0480019017.01.T01:exon:8359;Parent=MsG0480019017.01.T01
Chr4 exon 13347280 13347628 13347280 ID=MsG0480019017.01.T01:exon:8358;Parent=MsG0480019017.01.T01
Chr4 five_prime_UTR 13347280 13347628 13347280 ID=MsG0480019017.01.T01:five_prime_utr;Parent=MsG0480019017.01.T01
Chr4 five_prime_UTR 13346046 13346054 13346046 ID=MsG0480019017.01.T01:five_prime_utr;Parent=MsG0480019017.01.T01
Chr4 CDS 13345995 13346045 13345995 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 CDS 13345779 13345854 13345779 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 CDS 13345463 13345558 13345463 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 CDS 13345267 13345378 13345267 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 CDS 13344429 13344530 13344429 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 CDS 13344272 13344338 13344272 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 CDS 13343774 13344160 13343774 ID=MsG0480019017.01.T01:cds;Parent=MsG0480019017.01.T01
Chr4 three_prime_UTR 13342984 13343773 13342984 ID=MsG0480019017.01.T01:three_prime_utr;Parent=MsG0480019017.01.T01
Gene Sequence

>MsG0480019017.01.T01

ATGTTGTTGGACCGGAATGTCAAAGTCGATGTCTTGAATCGCCATAAACAGACACCGTTAATGTTGGCTGTGATGCATGGAAAGACTGGTTGCATGGAAAAGCTTATTCAAGCTGGAGCTAATGTATATTCATTAAAGGCTATTCTTTCAGCTGCTCATTCTTCACCTGTTGCAGATTCTTGTTTAGTCACTCTTTCATGGTCCCCATCTATGGATGTGTCATATGGAAATGGTGCCACGCCGCTGCACCTTGCTGCTCGTCATAGACGGCTTGAATGCCTTCATTCCCTATTAGACAACGGGGCTCTTGTTTGTGCTTCAACCGGTGGATACGGGAGAATACCGTTCACAGTTGCTCTTAAGAACAAGCATAGAGCATGTGCTGCCCTGCTCGATCCCTCATCAGCCGCACCTCTTGTTTGGCCATCTCCGCTAAAGAATGACATACCTTCATCTCCACTACGTTCTGATAGCAAGTATGATGATATTGTCTCGGATTCTGAGGAAAGCAATATGGAGTTATGTTGTATATGCTTCGACCAAGTGTGCACAATTGAGGTCAAACCTTGTGATCATCAAATGTGTGCTCATTGTACCCTAGCACTATGCTGCCTCAAGAAGCCTGATCCTGCAACCGGTTGCACCACGGGACCAGTTTGTCCATTTTGTCGAGGTGCCATCCTTCAATTAAATGTTGCCAAGATCAAGACTGATAGTGATACAGAAGTAGAATCCAGTCCAACAAACCAAGAAGGTCAAGAAAATCAAATTTCAGCGAAGGGAGCAGCAGCTTCAAGAGTTTGTCAGCCATTGGCTCATTCGGAAGGATCGCTAGTCGCAATTCAGGAAAGGTTGATGCCGAAAAGCAATGAGGGATTTCTTAAGTCTTGA

Protein sequence

>MsG0480019017.01.T01

MLLDRNVKVDVLNRHKQTPLMLAVMHGKTGCMEKLIQAGANVYSLKAILSAAHSSPVADSCLVTLSWSPSMDVSYGNGATPLHLAARHRRLECLHSLLDNGALVCASTGGYGRIPFTVALKNKHRACAALLDPSSAAPLVWPSPLKNDIPSSPLRSDSKYDDIVSDSEESNMELCCICFDQVCTIEVKPCDHQMCAHCTLALCCLKKPDPATGCTTGPVCPFCRGAILQLNVAKIKTDSDTEVESSPTNQEGQENQISAKGAAASRVCQPLAHSEGSLVAIQERLMPKSNEGFLKS*