Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022797.01.T01 | XP_003621678.1 | 97.5 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022797.01.T01 | A2Q573 | 97.500 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0480022797.01 | 0.807679 | 4.493187e-50 | 2.518326e-47 |
| MsG0180001050.01 | MsG0480022797.01 | 0.803521 | 3.350885e-49 | 1.687544e-46 |
| MsG0180001053.01 | MsG0480022797.01 | 0.808009 | 3.822179e-50 | 2.160888e-47 |
| MsG0180004186.01 | MsG0480022797.01 | 0.801409 | 9.128703e-49 | 4.356246e-46 |
| MsG0180004300.01 | MsG0480022797.01 | 0.800847 | 1.189292e-48 | 5.595568e-46 |
| MsG0180004510.01 | MsG0480022797.01 | 0.815332 | 9.760417e-52 | 6.709819e-49 |
| MsG0180004562.01 | MsG0480022797.01 | 0.820131 | 8.066942e-53 | 6.329453e-50 |
| MsG0180004752.01 | MsG0480022797.01 | 0.809743 | 1.627473e-50 | 9.633511e-48 |
| MsG0180005272.01 | MsG0480022797.01 | 0.827609 | 1.423158e-54 | 1.380625e-51 |
| MsG0280011288.01 | MsG0480022797.01 | 0.812313 | 4.515224e-51 | 2.861238e-48 |
| MsG0380011613.01 | MsG0480022797.01 | 0.803416 | 3.522027e-49 | 1.768934e-46 |
| MsG0380011674.01 | MsG0480022797.01 | 0.820153 | 7.973824e-53 | 6.259960e-50 |
| MsG0480019038.01 | MsG0480022797.01 | 0.816457 | 5.474884e-52 | 3.881223e-49 |
| MsG0480019395.01 | MsG0480022797.01 | 0.802686 | 4.987117e-49 | 2.458391e-46 |
| MsG0480021131.01 | MsG0480022797.01 | 0.813111 | 3.020260e-51 | 1.954703e-48 |
| MsG0480021135.01 | MsG0480022797.01 | 0.817462 | 3.256562e-52 | 2.373303e-49 |
| MsG0480022125.01 | MsG0480022797.01 | 0.815627 | 8.391151e-52 | 5.815779e-49 |
| MsG0480022407.01 | MsG0480022797.01 | 0.812608 | 3.891983e-51 | 2.485664e-48 |
| MsG0480022515.01 | MsG0480022797.01 | 0.801670 | 8.071708e-49 | 3.877306e-46 |
| MsG0480022736.01 | MsG0480022797.01 | 0.818362 | 2.038946e-52 | 1.523149e-49 |
| MsG0480022797.01 | MsG0580024154.01 | 0.807091 | 5.986414e-50 | 3.304339e-47 |
| MsG0480022797.01 | MsG0580024871.01 | 0.830606 | 2.672177e-55 | 2.829171e-52 |
| MsG0480022797.01 | MsG0580024999.01 | 0.813557 | 2.409914e-51 | 1.578878e-48 |
| MsG0480022797.01 | MsG0580027641.01 | 0.825453 | 4.649391e-54 | 4.239351e-51 |
| MsG0480022797.01 | MsG0580028999.01 | 0.812268 | 4.618716e-51 | 2.923324e-48 |
| MsG0480022797.01 | MsG0580029798.01 | 0.802989 | 4.316792e-49 | 2.144391e-46 |
| MsG0480022797.01 | MsG0780037232.01 | 0.831477 | 1.632661e-55 | 1.773856e-52 |
| MsG0480022797.01 | MsG0780037599.01 | 0.843822 | 1.105953e-58 | 1.751348e-55 |
| MsG0480022797.01 | MsG0780040144.01 | 0.815586 | 8.568351e-52 | 5.931507e-49 |
| MsG0480022797.01 | MsG0780040313.01 | 0.809788 | 1.591343e-50 | 9.430731e-48 |
| MsG0480022797.01 | MsG0780040480.01 | 0.811452 | 6.951358e-51 | 4.304605e-48 |
| MsG0480022797.01 | MsG0780041180.01 | 0.800590 | 1.341874e-48 | 6.272286e-46 |
| MsG0480022797.01 | MsG0880043715.01 | 0.829607 | 4.683474e-55 | 4.817123e-52 |
| MsG0480022797.01 | MsG0880044792.01 | 0.824781 | 6.703054e-54 | 5.996595e-51 |
| MsG0480022797.01 | MsG0880045683.01 | 0.802714 | 4.921887e-49 | 2.428011e-46 |
| MsG0480022797.01 | MsG0880045907.01 | 0.819963 | 8.811437e-53 | 6.881043e-50 |
| MsG0480022797.01 | MsG0880046863.01 | 0.802527 | 5.377494e-49 | 2.640068e-46 |
| MsG0480022797.01 | MsG0880047486.01 | 0.805881 | 1.077582e-49 | 5.766338e-47 |
| MsG0480022797.01 | MsG0880047491.01 | 0.829139 | 6.083747e-55 | 6.171997e-52 |
| MsG0480022797.01 | MsG0880047531.01 | 0.812798 | 3.536748e-51 | 2.269909e-48 |
| MsG0380018007.01 | MsG0480022797.01 | 0.801403 | 9.155857e-49 | 4.368493e-46 |
| MsG0280007686.01 | MsG0480022797.01 | 0.819583 | 1.076346e-52 | 8.316505e-50 |
| MsG0280009932.01 | MsG0480022797.01 | 0.802451 | 5.576514e-49 | 2.732537e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022797.01.T01 | MTR_7g021620 | 97.500 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 0.0 | 622 |
| MsG0480022797.01.T01 | MTR_4g096890 | 95.312 | 320 | 15 | 0 | 1 | 320 | 1 | 320 | 0.0 | 611 |
| MsG0480022797.01.T01 | MTR_1g029440 | 41.018 | 334 | 176 | 5 | 1 | 317 | 1 | 330 | 2.79e-62 | 201 |
| MsG0480022797.01.T01 | MTR_3g088975 | 38.253 | 332 | 187 | 4 | 1 | 317 | 1 | 329 | 2.16e-61 | 199 |
| MsG0480022797.01.T01 | MTR_3g088965 | 33.435 | 329 | 192 | 8 | 1 | 307 | 1 | 324 | 1.73e-40 | 144 |
| MsG0480022797.01.T01 | MTR_3g014430 | 60.163 | 123 | 32 | 4 | 183 | 300 | 2 | 112 | 1.95e-33 | 120 |
| MsG0480022797.01.T01 | MTR_4g082350 | 25.329 | 304 | 198 | 7 | 7 | 289 | 41 | 336 | 1.56e-16 | 79.7 |
| MsG0480022797.01.T01 | MTR_3g014620 | 73.333 | 45 | 12 | 0 | 164 | 208 | 12 | 56 | 1.29e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022797.01.T01 | AT4G19950 | 74.766 | 321 | 80 | 1 | 1 | 320 | 1 | 321 | 5.48e-163 | 457 |
| MsG0480022797.01.T01 | AT5G44860 | 73.832 | 321 | 83 | 1 | 1 | 320 | 1 | 321 | 7.42e-162 | 454 |
| MsG0480022797.01.T01 | AT5G44860 | 73.832 | 321 | 83 | 1 | 1 | 320 | 1 | 321 | 7.42e-162 | 454 |
| MsG0480022797.01.T01 | AT1G31130 | 69.040 | 323 | 95 | 2 | 1 | 320 | 1 | 321 | 1.15e-144 | 410 |
| MsG0480022797.01.T01 | AT1G26650 | 27.815 | 302 | 189 | 6 | 12 | 292 | 26 | 319 | 6.74e-21 | 92.0 |
| MsG0480022797.01.T01 | AT1G69430 | 26.490 | 302 | 193 | 7 | 11 | 291 | 41 | 334 | 2.44e-17 | 82.0 |
Find 64 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATTCAAATGGAAAATT+TGG | 0.141896 | 4:+76779364 | MsG0480022797.01.T01:CDS |
| CAAAAGAAAGAGGGAAAATT+AGG | 0.157322 | 4:-76778542 | None:intergenic |
| TGTTCTTGTCATTGTGAATT+TGG | 0.199328 | 4:+76779217 | MsG0480022797.01.T01:CDS |
| GTTTGTTTATTACTTTCTTA+TGG | 0.214114 | 4:+76778811 | MsG0480022797.01.T01:CDS |
| AGATTGAAGCTGAGAAATTA+AGG | 0.243695 | 4:-76778595 | None:intergenic |
| TCTGTGCTTGAACCTCTTTA+TGG | 0.244172 | 4:+76779011 | MsG0480022797.01.T01:CDS |
| GATTGTCATTGGTGGGTTCT+TGG | 0.268660 | 4:+76779190 | MsG0480022797.01.T01:CDS |
| GGTTAGATATGCTGCACTTT+TGG | 0.290596 | 4:+76779076 | MsG0480022797.01.T01:CDS |
| TTGAGGAATTGAAGTTCTTC+AGG | 0.305893 | 4:-76778444 | None:intergenic |
| TGTGAATTTGGTTGGGTTGT+TGG | 0.309528 | 4:+76779229 | MsG0480022797.01.T01:CDS |
| TTTCGTCTTTGTTCTTTGTT+TGG | 0.316144 | 4:+76778860 | MsG0480022797.01.T01:CDS |
| TATAACTGCTTTGTGGCATT+TGG | 0.326265 | 4:+76778977 | MsG0480022797.01.T01:CDS |
| GGTTAGGGTAATTAAATAGA+AGG | 0.347948 | 4:-76778520 | None:intergenic |
| TTTGTTTATTACTTTCTTAT+GGG | 0.355976 | 4:+76778812 | MsG0480022797.01.T01:CDS |
| AAAGAGGGAAAATTAGGGTT+AGG | 0.378142 | 4:-76778536 | None:intergenic |
| CTTGTCATTGTGAATTTGGT+TGG | 0.385554 | 4:+76779221 | MsG0480022797.01.T01:CDS |
| ATTTGAATGCTGCTCTTAAG+AGG | 0.385789 | 4:-76779353 | None:intergenic |
| AACTTTAGGAATTGCTGAAA+TGG | 0.389046 | 4:-76778781 | None:intergenic |
| CTTATTTGCGCGGTTATTAG+TGG | 0.393312 | 4:+76779113 | MsG0480022797.01.T01:CDS |
| TGTTCTTTGTTTGGTTCTGA+TGG | 0.397201 | 4:+76778869 | MsG0480022797.01.T01:CDS |
| TTTCTAGGATTGTCATTGGT+GGG | 0.414842 | 4:+76779183 | MsG0480022797.01.T01:CDS |
| GAAGAGTTATGAGTTGTTGA+AGG | 0.420597 | 4:+76779049 | MsG0480022797.01.T01:CDS |
| ATGTTTATATAACTGCTTTG+TGG | 0.423556 | 4:+76778970 | MsG0480022797.01.T01:CDS |
| AAAAGAAAGAGGGAAAATTA+GGG | 0.424834 | 4:-76778541 | None:intergenic |
| CTGCACAATCCTCTCATGAT+TGG | 0.427622 | 4:+76778631 | MsG0480022797.01.T01:CDS |
| TTGTCATTGTGAATTTGGTT+GGG | 0.428320 | 4:+76779222 | MsG0480022797.01.T01:CDS |
| TTATGAGTTGTTGAAGGGTA+GGG | 0.428981 | 4:+76779055 | MsG0480022797.01.T01:CDS |
| GCTAAGATTGCAAAAGAAAG+AGG | 0.433779 | 4:-76778552 | None:intergenic |
| GTTATGAGTTGTTGAAGGGT+AGG | 0.441707 | 4:+76779054 | MsG0480022797.01.T01:CDS |
| GTCATTGGTGGGTTCTTGGT+TGG | 0.447415 | 4:+76779194 | MsG0480022797.01.T01:CDS |
| TTTAGCGTGGTTGTGGTACA+TGG | 0.449111 | 4:+76779140 | MsG0480022797.01.T01:CDS |
| GATTGAAGCTGAGAAATTAA+GGG | 0.452590 | 4:-76778594 | None:intergenic |
| GTACATGGTGGTGATGGTTA+TGG | 0.461928 | 4:+76779155 | MsG0480022797.01.T01:CDS |
| AATTAAGGGGTGTGTGAAAA+GGG | 0.462222 | 4:-76778580 | None:intergenic |
| GATCATCTTGGTGGCTACCT+TGG | 0.466274 | 4:+76779320 | MsG0480022797.01.T01:CDS |
| TCTTAAGAGCAGCATTCAAA+TGG | 0.471769 | 4:+76779355 | MsG0480022797.01.T01:CDS |
| AAATTAAGGGGTGTGTGAAA+AGG | 0.475519 | 4:-76778581 | None:intergenic |
| AGAAAGCGAAGAGGAAAATG+AGG | 0.480466 | 4:-76778683 | None:intergenic |
| AAGAGGGAAAATTAGGGTTA+GGG | 0.495319 | 4:-76778535 | None:intergenic |
| TGGGATGTTTAGCGTGGTTG+TGG | 0.508402 | 4:+76779133 | MsG0480022797.01.T01:CDS |
| AAGAGTTATGAGTTGTTGAA+GGG | 0.511629 | 4:+76779050 | MsG0480022797.01.T01:CDS |
| AGTGCTTTACATGATCATCT+TGG | 0.515132 | 4:+76779308 | MsG0480022797.01.T01:CDS |
| TTAAGATGTTAGGGATGTTG+AGG | 0.524756 | 4:-76778461 | None:intergenic |
| TTATTTGCGCGGTTATTAGT+GGG | 0.540153 | 4:+76779114 | MsG0480022797.01.T01:CDS |
| GCTTTACATGATCATCTTGG+TGG | 0.540813 | 4:+76779311 | MsG0480022797.01.T01:CDS |
| TTCTCTCTACACCTCAAAGC+CGG | 0.547939 | 4:+76778743 | MsG0480022797.01.T01:CDS |
| CAATCATGAGAGGATTGTGC+AGG | 0.560830 | 4:-76778630 | None:intergenic |
| ATAGCAGCAAAACCATAAAG+AGG | 0.564333 | 4:-76779023 | None:intergenic |
| GGTGAAAACAACGGCAGCGG+TGG | 0.572445 | 4:-76778715 | None:intergenic |
| AAACAACGGCAGCGGTGGAA+AGG | 0.574298 | 4:-76778710 | None:intergenic |
| AAAGGAGAGAGAAAGCGAAG+AGG | 0.574399 | 4:-76778692 | None:intergenic |
| GATTGTGCAGGATCAGTGAA+AGG | 0.590109 | 4:-76778618 | None:intergenic |
| GTTGTGGTACATGGTGGTGA+TGG | 0.590598 | 4:+76779149 | MsG0480022797.01.T01:CDS |
| CTAAGATTGCAAAAGAAAGA+GGG | 0.595963 | 4:-76778551 | None:intergenic |
| CGGGTATTTGCTTATTTGCG+CGG | 0.599347 | 4:+76779103 | MsG0480022797.01.T01:CDS |
| GACGGTGAAAACAACGGCAG+CGG | 0.601261 | 4:-76778718 | None:intergenic |
| TAAGAGGCACATATTCTCCA+AGG | 0.610436 | 4:-76779337 | None:intergenic |
| AGCAGTTGATACTGACAACT+CGG | 0.612984 | 4:+76778896 | MsG0480022797.01.T01:CDS |
| GAGAAGAGTCCAATCATGAG+AGG | 0.621578 | 4:-76778640 | None:intergenic |
| ATTGAAGCTGAGAAATTAAG+GGG | 0.648141 | 4:-76778593 | None:intergenic |
| TATTAGTGGGATGTTTAGCG+TGG | 0.653236 | 4:+76779127 | MsG0480022797.01.T01:CDS |
| TGAGGTGTAGAGAGAAGCGA+CGG | 0.663460 | 4:-76778736 | None:intergenic |
| AGAAGCGACGGTGAAAACAA+CGG | 0.686937 | 4:-76778724 | None:intergenic |
| AGCGTGGTTGTGGTACATGG+TGG | 0.722658 | 4:+76779143 | MsG0480022797.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTATTACTTTCTTAT+GGG | + | Chr4:76778812-76778831 | MsG0480022797.01.T01:CDS | 15.0% |
| !!! | TAATTAAATAGAAGGTTTTA+GGG | - | Chr4:76778515-76778534 | None:intergenic | 15.0% |
| !! | GTTTGTTTATTACTTTCTTA+TGG | + | Chr4:76778811-76778830 | MsG0480022797.01.T01:CDS | 20.0% |
| !!! | AATTAAATAGAAGGTTTTAG+GGG | - | Chr4:76778514-76778533 | None:intergenic | 20.0% |
| !!! | ATTGATTCTTTTAAGATGTT+AGG | - | Chr4:76778474-76778493 | None:intergenic | 20.0% |
| !!! | GTAATTAAATAGAAGGTTTT+AGG | - | Chr4:76778516-76778535 | None:intergenic | 20.0% |
| !!! | TTGATTCTTTTAAGATGTTA+GGG | - | Chr4:76778473-76778492 | None:intergenic | 20.0% |
| ! | AAAAGAAAGAGGGAAAATTA+GGG | - | Chr4:76778544-76778563 | None:intergenic | 25.0% |
| ! | AACAAACGCTTAAAAACTTT+AGG | - | Chr4:76778798-76778817 | None:intergenic | 25.0% |
| ! | ATGTTTATATAACTGCTTTG+TGG | + | Chr4:76778970-76778989 | MsG0480022797.01.T01:CDS | 25.0% |
| AAGAGTTATGAGTTGTTGAA+GGG | + | Chr4:76779050-76779069 | MsG0480022797.01.T01:CDS | 30.0% | |
| AGATTGAAGCTGAGAAATTA+AGG | - | Chr4:76778598-76778617 | None:intergenic | 30.0% | |
| ATTGAAGCTGAGAAATTAAG+GGG | - | Chr4:76778596-76778615 | None:intergenic | 30.0% | |
| CAAAAGAAAGAGGGAAAATT+AGG | - | Chr4:76778545-76778564 | None:intergenic | 30.0% | |
| CAGCATTCAAATGGAAAATT+TGG | + | Chr4:76779364-76779383 | MsG0480022797.01.T01:CDS | 30.0% | |
| CTAAGATTGCAAAAGAAAGA+GGG | - | Chr4:76778554-76778573 | None:intergenic | 30.0% | |
| GATTGAAGCTGAGAAATTAA+GGG | - | Chr4:76778597-76778616 | None:intergenic | 30.0% | |
| GGTAGAAAAACTGAATGATA+AGG | - | Chr4:76778665-76778684 | None:intergenic | 30.0% | |
| GGTTAGGGTAATTAAATAGA+AGG | - | Chr4:76778523-76778542 | None:intergenic | 30.0% | |
| TGTTCTTGTCATTGTGAATT+TGG | + | Chr4:76779217-76779236 | MsG0480022797.01.T01:CDS | 30.0% | |
| TTGTCATTGTGAATTTGGTT+GGG | + | Chr4:76779222-76779241 | MsG0480022797.01.T01:CDS | 30.0% | |
| TTTCGTCTTTGTTCTTTGTT+TGG | + | Chr4:76778860-76778879 | MsG0480022797.01.T01:CDS | 30.0% | |
| ! | AACTTTAGGAATTGCTGAAA+TGG | - | Chr4:76778784-76778803 | None:intergenic | 30.0% |
| !!! | AAGGTTTTAGGGGAAATTTT+TGG | - | Chr4:76778504-76778523 | None:intergenic | 30.0% |
| !!! | AGGTTTTAGGGGAAATTTTT+GGG | - | Chr4:76778503-76778522 | None:intergenic | 30.0% |
| AAAGAGGGAAAATTAGGGTT+AGG | - | Chr4:76778539-76778558 | None:intergenic | 35.0% | |
| AAGAGGGAAAATTAGGGTTA+GGG | - | Chr4:76778538-76778557 | None:intergenic | 35.0% | |
| AGTGCTTTACATGATCATCT+TGG | + | Chr4:76779308-76779327 | MsG0480022797.01.T01:CDS | 35.0% | |
| ATAGCAGCAAAACCATAAAG+AGG | - | Chr4:76779026-76779045 | None:intergenic | 35.0% | |
| ATGGTGTTTGAAAAAGACAC+CGG | - | Chr4:76778765-76778784 | None:intergenic | 35.0% | |
| ATTTGAATGCTGCTCTTAAG+AGG | - | Chr4:76779356-76779375 | None:intergenic | 35.0% | |
| CTTGTCATTGTGAATTTGGT+TGG | + | Chr4:76779221-76779240 | MsG0480022797.01.T01:CDS | 35.0% | |
| GAAGAGTTATGAGTTGTTGA+AGG | + | Chr4:76779049-76779068 | MsG0480022797.01.T01:CDS | 35.0% | |
| GCTAAGATTGCAAAAGAAAG+AGG | - | Chr4:76778555-76778574 | None:intergenic | 35.0% | |
| TATAACTGCTTTGTGGCATT+TGG | + | Chr4:76778977-76778996 | MsG0480022797.01.T01:CDS | 35.0% | |
| TCTTAAGAGCAGCATTCAAA+TGG | + | Chr4:76779355-76779374 | MsG0480022797.01.T01:CDS | 35.0% | |
| TTAAGATGTTAGGGATGTTG+AGG | - | Chr4:76778464-76778483 | None:intergenic | 35.0% | |
| TTATGAGTTGTTGAAGGGTA+GGG | + | Chr4:76779055-76779074 | MsG0480022797.01.T01:CDS | 35.0% | |
| TTATTTGCGCGGTTATTAGT+GGG | + | Chr4:76779114-76779133 | MsG0480022797.01.T01:CDS | 35.0% | |
| TTGAGGAATTGAAGTTCTTC+AGG | - | Chr4:76778447-76778466 | None:intergenic | 35.0% | |
| ! | AAATTAAGGGGTGTGTGAAA+AGG | - | Chr4:76778584-76778603 | None:intergenic | 35.0% |
| ! | AATTAAGGGGTGTGTGAAAA+GGG | - | Chr4:76778583-76778602 | None:intergenic | 35.0% |
| !! | TGTTCTTTGTTTGGTTCTGA+TGG | + | Chr4:76778869-76778888 | MsG0480022797.01.T01:CDS | 35.0% |
| !! | TTTCTAGGATTGTCATTGGT+GGG | + | Chr4:76779183-76779202 | MsG0480022797.01.T01:CDS | 35.0% |
| !!! | GTGTTTTCTAGGATTGTCAT+TGG | + | Chr4:76779179-76779198 | MsG0480022797.01.T01:CDS | 35.0% |
| !!! | TTTTCTAGGATTGTCATTGG+TGG | + | Chr4:76779182-76779201 | MsG0480022797.01.T01:CDS | 35.0% |
| AGAAAGCGAAGAGGAAAATG+AGG | - | Chr4:76778686-76778705 | None:intergenic | 40.0% | |
| CTTATTTGCGCGGTTATTAG+TGG | + | Chr4:76779113-76779132 | MsG0480022797.01.T01:CDS | 40.0% | |
| GCTTTACATGATCATCTTGG+TGG | + | Chr4:76779311-76779330 | MsG0480022797.01.T01:CDS | 40.0% | |
| GTTATGAGTTGTTGAAGGGT+AGG | + | Chr4:76779054-76779073 | MsG0480022797.01.T01:CDS | 40.0% | |
| TATTAGTGGGATGTTTAGCG+TGG | + | Chr4:76779127-76779146 | MsG0480022797.01.T01:CDS | 40.0% | |
| TCTGTGCTTGAACCTCTTTA+TGG | + | Chr4:76779011-76779030 | MsG0480022797.01.T01:CDS | 40.0% | |
| ! | AGCAGTTGATACTGACAACT+CGG | + | Chr4:76778896-76778915 | MsG0480022797.01.T01:CDS | 40.0% |
| ! | ATGGTTATGGCGTGTTTTCT+AGG | + | Chr4:76779168-76779187 | MsG0480022797.01.T01:CDS | 40.0% |
| ! | GGTTAGATATGCTGCACTTT+TGG | + | Chr4:76779076-76779095 | MsG0480022797.01.T01:CDS | 40.0% |
| ! | TAAGAGGCACATATTCTCCA+AGG | - | Chr4:76779340-76779359 | None:intergenic | 40.0% |
| ! | TGTGAATTTGGTTGGGTTGT+TGG | + | Chr4:76779229-76779248 | MsG0480022797.01.T01:CDS | 40.0% |
| !!! | TATGCTGCACTTTTGGTTTG+CGG | + | Chr4:76779083-76779102 | MsG0480022797.01.T01:CDS | 40.0% |
| AAAGGAGAGAGAAAGCGAAG+AGG | - | Chr4:76778695-76778714 | None:intergenic | 45.0% | |
| AGAAGCGACGGTGAAAACAA+CGG | - | Chr4:76778727-76778746 | None:intergenic | 45.0% | |
| CAATCATGAGAGGATTGTGC+AGG | - | Chr4:76778633-76778652 | None:intergenic | 45.0% | |
| CGGGTATTTGCTTATTTGCG+CGG | + | Chr4:76779103-76779122 | MsG0480022797.01.T01:CDS | 45.0% | |
| CTGCACAATCCTCTCATGAT+TGG | + | Chr4:76778631-76778650 | MsG0480022797.01.T01:CDS | 45.0% | |
| GAGAAGAGTCCAATCATGAG+AGG | - | Chr4:76778643-76778662 | None:intergenic | 45.0% | |
| GATTGTGCAGGATCAGTGAA+AGG | - | Chr4:76778621-76778640 | None:intergenic | 45.0% | |
| TTCTCTCTACACCTCAAAGC+CGG | + | Chr4:76778743-76778762 | MsG0480022797.01.T01:CDS | 45.0% | |
| TTTAGCGTGGTTGTGGTACA+TGG | + | Chr4:76779140-76779159 | MsG0480022797.01.T01:CDS | 45.0% | |
| !! | GATTGTCATTGGTGGGTTCT+TGG | + | Chr4:76779190-76779209 | MsG0480022797.01.T01:CDS | 45.0% |
| !! | GTACATGGTGGTGATGGTTA+TGG | + | Chr4:76779155-76779174 | MsG0480022797.01.T01:CDS | 45.0% |
| !! | TGAAAAAGACACCGGCTTTG+AGG | - | Chr4:76778757-76778776 | None:intergenic | 45.0% |
| !!! | ATGCTGCACTTTTGGTTTGC+GGG | + | Chr4:76779084-76779103 | MsG0480022797.01.T01:CDS | 45.0% |
| TGAGGTGTAGAGAGAAGCGA+CGG | - | Chr4:76778739-76778758 | None:intergenic | 50.0% | |
| TGGGATGTTTAGCGTGGTTG+TGG | + | Chr4:76779133-76779152 | MsG0480022797.01.T01:CDS | 50.0% | |
| ! | GATCATCTTGGTGGCTACCT+TGG | + | Chr4:76779320-76779339 | MsG0480022797.01.T01:CDS | 50.0% |
| ! | GTTGTGGTACATGGTGGTGA+TGG | + | Chr4:76779149-76779168 | MsG0480022797.01.T01:CDS | 50.0% |
| !! | GTCATTGGTGGGTTCTTGGT+TGG | + | Chr4:76779194-76779213 | MsG0480022797.01.T01:CDS | 50.0% |
| AAACAACGGCAGCGGTGGAA+AGG | - | Chr4:76778713-76778732 | None:intergenic | 55.0% | |
| AGCGTGGTTGTGGTACATGG+TGG | + | Chr4:76779143-76779162 | MsG0480022797.01.T01:CDS | 55.0% | |
| GACGGTGAAAACAACGGCAG+CGG | - | Chr4:76778721-76778740 | None:intergenic | 55.0% | |
| GGTGAAAACAACGGCAGCGG+TGG | - | Chr4:76778718-76778737 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 76778432 | 76779394 | 76778432 | ID=MsG0480022797.01;Name=MsG0480022797.01 |
| Chr4 | mRNA | 76778432 | 76779394 | 76778432 | ID=MsG0480022797.01.T01;Parent=MsG0480022797.01;Name=MsG0480022797.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|320 |
| Chr4 | exon | 76778432 | 76779394 | 76778432 | ID=MsG0480022797.01.T01:exon:19822;Parent=MsG0480022797.01.T01 |
| Chr4 | CDS | 76778432 | 76779394 | 76778432 | ID=MsG0480022797.01.T01:cds;Parent=MsG0480022797.01.T01 |
| Gene Sequence |
| Protein sequence |
