AlfalfaGEDB | MsG0480022797.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022797.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022797.01.T01	XP_003621678.1	97.5	320	8	0	1	320	1	320	0	622

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022797.01.T01	A2Q573	97.500	320	8	0	1	320	1	320	0.0	622

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048345.01	MsG0480022797.01	0.807679	4.493187e-50	2.518326e-47
MsG0180001050.01	MsG0480022797.01	0.803521	3.350885e-49	1.687544e-46
MsG0180001053.01	MsG0480022797.01	0.808009	3.822179e-50	2.160888e-47
MsG0180004186.01	MsG0480022797.01	0.801409	9.128703e-49	4.356246e-46
MsG0180004300.01	MsG0480022797.01	0.800847	1.189292e-48	5.595568e-46
MsG0180004510.01	MsG0480022797.01	0.815332	9.760417e-52	6.709819e-49
MsG0180004562.01	MsG0480022797.01	0.820131	8.066942e-53	6.329453e-50
MsG0180004752.01	MsG0480022797.01	0.809743	1.627473e-50	9.633511e-48
MsG0180005272.01	MsG0480022797.01	0.827609	1.423158e-54	1.380625e-51
MsG0280007686.01	MsG0480022797.01	0.819583	1.076346e-52	8.316505e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022797.01.T01	MTR_7g021620	97.500	320	8	0	1	320	1	320	0.0	622
MsG0480022797.01.T01	MTR_4g096890	95.312	320	15	0	1	320	1	320	0.0	611
MsG0480022797.01.T01	MTR_1g029440	41.018	334	176	5	1	317	1	330	2.79e-62	201
MsG0480022797.01.T01	MTR_3g088975	38.253	332	187	4	1	317	1	329	2.16e-61	199
MsG0480022797.01.T01	MTR_3g088965	33.435	329	192	8	1	307	1	324	1.73e-40	144
MsG0480022797.01.T01	MTR_3g014430	60.163	123	32	4	183	300	2	112	1.95e-33	120
MsG0480022797.01.T01	MTR_4g082350	25.329	304	198	7	7	289	41	336	1.56e-16	79.7
MsG0480022797.01.T01	MTR_3g014620	73.333	45	12	0	164	208	12	56	1.29e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022797.01.T01	AT4G19950	74.766	321	80	1	1	320	1	321	5.48e-163	457
MsG0480022797.01.T01	AT5G44860	73.832	321	83	1	1	320	1	321	7.42e-162	454
MsG0480022797.01.T01	AT5G44860	73.832	321	83	1	1	320	1	321	7.42e-162	454
MsG0480022797.01.T01	AT1G31130	69.040	323	95	2	1	320	1	321	1.15e-144	410
MsG0480022797.01.T01	AT1G26650	27.815	302	189	6	12	292	26	319	6.74e-21	92.0
MsG0480022797.01.T01	AT1G69430	26.490	302	193	7	11	291	41	334	2.44e-17	82.0

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Find 64 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAGGGAAAATTA+GGG	0.424834	4:-76778541	None:intergenic
AAACAACGGCAGCGGTGGAA+AGG	0.574298	4:-76778710	None:intergenic
AAAGAGGGAAAATTAGGGTT+AGG	0.378142	4:-76778536	None:intergenic
AAAGGAGAGAGAAAGCGAAG+AGG	0.574399	4:-76778692	None:intergenic
AAATTAAGGGGTGTGTGAAA+AGG	0.475519	4:-76778581	None:intergenic
AACTTTAGGAATTGCTGAAA+TGG	0.389046	4:-76778781	None:intergenic
AAGAGGGAAAATTAGGGTTA+GGG	0.495319	4:-76778535	None:intergenic
AAGAGTTATGAGTTGTTGAA+GGG	0.511629	4:+76779050	MsG0480022797.01.T01:CDS
AATTAAGGGGTGTGTGAAAA+GGG	0.462222	4:-76778580	None:intergenic
AGAAAGCGAAGAGGAAAATG+AGG	0.480466	4:-76778683	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTTATGAGTTGTTGAA+GGG	+	Chr4:76779050-76779069	MsG0480022797.01.T01:CDS	30.0%
AGATTGAAGCTGAGAAATTA+AGG	-	Chr4:76778598-76778617	None:intergenic	30.0%
ATTGAAGCTGAGAAATTAAG+GGG	-	Chr4:76778596-76778615	None:intergenic	30.0%
CAAAAGAAAGAGGGAAAATT+AGG	-	Chr4:76778545-76778564	None:intergenic	30.0%
CAGCATTCAAATGGAAAATT+TGG	+	Chr4:76779364-76779383	MsG0480022797.01.T01:CDS	30.0%
CTAAGATTGCAAAAGAAAGA+GGG	-	Chr4:76778554-76778573	None:intergenic	30.0%
GATTGAAGCTGAGAAATTAA+GGG	-	Chr4:76778597-76778616	None:intergenic	30.0%
GGTAGAAAAACTGAATGATA+AGG	-	Chr4:76778665-76778684	None:intergenic	30.0%
GGTTAGGGTAATTAAATAGA+AGG	-	Chr4:76778523-76778542	None:intergenic	30.0%
TGTTCTTGTCATTGTGAATT+TGG	+	Chr4:76779217-76779236	MsG0480022797.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	76778432	76779394	76778432	ID=MsG0480022797.01;Name=MsG0480022797.01
Chr4	mRNA	76778432	76779394	76778432	ID=MsG0480022797.01.T01;Parent=MsG0480022797.01;Name=MsG0480022797.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|320
Chr4	exon	76778432	76779394	76778432	ID=MsG0480022797.01.T01:exon:19822;Parent=MsG0480022797.01.T01
Chr4	CDS	76778432	76779394	76778432	ID=MsG0480022797.01.T01:cds;Parent=MsG0480022797.01.T01

Gene Sequence

>MsG0480022797.01.T01

ATGGATCTAGCTCCTGAAGAACTTCAATTCCTCAACATCCCTAACATCTTAAAAGAATCAATTTCAATCCCAAAAATTTCCCCTAAAACCTTCTATTTAATTACCCTAACCCTAATTTTCCCTCTTTCTTTTGCAATCTTAGCTCATTCCCTTTTCACACACCCCTTAATTTCTCAGCTTCAATCTCCTTTCACTGATCCTGCACAATCCTCTCATGATTGGACTCTTCTCCTTATCATTCAGTTTTTCTACCTCATTTTCCTCTTCGCTTTCTCTCTCCTTTCCACCGCTGCCGTTGTTTTCACCGTCGCTTCTCTCTACACCTCAAAGCCGGTGTCTTTTTCAAACACCATTTCAGCAATTCCTAAAGTTTTTAAGCGTTTGTTTATTACTTTCTTATGGGTCACTCTACTTATGATTTGTTACAATTTCGTCTTTGTTCTTTGTTTGGTTCTGATGGTTGTAGCAGTTGATACTGACAACTCGGTTTTGTTGTTTTTCTCTGTTGTTTTGATTTTTGTGTTGTTTCTTGTTGTTCATGTTTATATAACTGCTTTGTGGCATTTGGCTAGTGTTGTGTCTGTGCTTGAACCTCTTTATGGTTTTGCTGCTATGAAGAAGAGTTATGAGTTGTTGAAGGGTAGGGTTAGATATGCTGCACTTTTGGTTTGCGGGTATTTGCTTATTTGCGCGGTTATTAGTGGGATGTTTAGCGTGGTTGTGGTACATGGTGGTGATGGTTATGGCGTGTTTTCTAGGATTGTCATTGGTGGGTTCTTGGTTGGTGTTCTTGTCATTGTGAATTTGGTTGGGTTGTTGGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTATCATCATCAAGAGATTGATAAGAGTGCTTTACATGATCATCTTGGTGGCTACCTTGGAGAATATGTGCCTCTTAAGAGCAGCATTCAAATGGAAAATTTGGATATATGA

Protein sequence

>MsG0480022797.01.T01

MDLAPEELQFLNIPNILKESISIPKISPKTFYLITLTLIFPLSFAILAHSLFTHPLISQLQSPFTDPAQSSHDWTLLLIIQFFYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPKVFKRLFITFLWVTLLMICYNFVFVLCLVLMVVAVDTDNSVLLFFSVVLIFVLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGRVRYAALLVCGYLLICAVISGMFSVVVVHGGDGYGVFSRIVIGGFLVGVLVIVNLVGLLVQSVFYYVCKSYHHQEIDKSALHDHLGGYLGEYVPLKSSIQMENLDI*