AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025526.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025526.01.T01 MTR_5g030360 89.655 725 61 5 1 721 1 715 0.0 1221
MsG0580025526.01.T01 MTR_5g430360 92.586 553 34 2 170 721 1 547 0.0 1009
MsG0580025526.01.T01 MTR_6g022300 70.650 569 134 9 146 705 60 604 0.0 742
MsG0580025526.01.T01 MTR_6g022310 58.104 728 193 14 18 705 1 656 0.0 716
MsG0580025526.01.T01 MTR_6g022290 67.430 568 130 10 153 712 27 547 0.0 707
MsG0580025526.01.T01 MTR_8g067060 52.198 364 155 5 105 466 162 508 5.84e-114 355
MsG0580025526.01.T01 MTR_8g471100 52.198 364 155 5 105 466 171 517 8.71e-114 355
MsG0580025526.01.T01 MTR_8g064910 47.988 323 152 6 152 466 51 365 1.66e-91 292
MsG0580025526.01.T01 MTR_4g130940 42.902 317 156 7 153 455 90 395 2.07e-74 257
MsG0580025526.01.T01 MTR_4g130940 42.902 317 156 7 153 455 90 395 4.10e-74 257
MsG0580025526.01.T01 MTR_0279s0020 40.064 312 166 8 160 467 1 295 2.13e-62 211
MsG0580025526.01.T01 MTR_0279s0020 39.032 310 168 8 151 456 1 293 1.02e-60 208
MsG0580025526.01.T01 MTR_4g111860 34.516 310 192 5 155 457 87 392 6.62e-55 195
MsG0580025526.01.T01 MTR_1g014680 34.700 317 180 9 155 455 181 486 7.31e-49 185
MsG0580025526.01.T01 MTR_2g070390 33.439 314 187 6 156 455 23 328 3.72e-48 181
MsG0580025526.01.T01 MTR_3g100480 34.286 315 181 9 156 455 585 888 3.33e-47 181
MsG0580025526.01.T01 MTR_5g032380 34.395 314 182 9 156 456 425 727 1.08e-46 179
MsG0580025526.01.T01 MTR_2g071620 35.443 316 177 9 156 455 465 769 8.44e-46 176
MsG0580025526.01.T01 MTR_5g066000 33.968 315 181 10 156 455 543 845 1.26e-44 173
MsG0580025526.01.T01 MTR_3g100480 32.070 343 181 10 156 455 585 918 1.45e-43 170
MsG0580025526.01.T01 MTR_1g014260 31.609 348 187 10 156 456 182 525 4.11e-40 157
MsG0580025526.01.T01 MTR_8g090190 31.714 350 182 10 156 457 24 364 4.32e-38 146
MsG0580025526.01.T01 MTR_3g087140 30.058 346 185 9 156 453 24 360 2.65e-36 140
MsG0580025526.01.T01 MTR_4g115880 27.877 391 185 14 156 456 198 581 5.69e-36 144
MsG0580025526.01.T01 MTR_1g010040 29.236 301 174 9 155 438 107 385 8.66e-24 107
MsG0580025526.01.T01 MTR_1g010040 29.236 301 174 9 155 438 107 385 9.34e-24 107
MsG0580025526.01.T01 MTR_2g060050 26.479 355 200 11 156 455 183 531 1.76e-23 105
MsG0580025526.01.T01 MTR_3g108660 27.919 394 244 14 60 438 17 385 7.18e-23 105
MsG0580025526.01.T01 MTR_3g108660 27.919 394 244 14 60 438 17 385 1.16e-22 104
MsG0580025526.01.T01 MTR_5g086700 27.451 306 195 12 142 437 195 483 1.18e-21 101
MsG0580025526.01.T01 MTR_5g086700 27.451 306 195 12 142 437 195 483 1.21e-21 101
MsG0580025526.01.T01 MTR_3g079840 27.215 316 203 13 142 447 191 489 1.37e-21 100
MsG0580025526.01.T01 MTR_3g079840 27.215 316 203 13 142 447 190 488 1.43e-21 100
MsG0580025526.01.T01 MTR_1g041240 27.063 303 198 12 155 447 200 489 9.22e-21 98.2
MsG0580025526.01.T01 MTR_1g041240 27.063 303 198 12 155 447 201 490 1.05e-20 98.2
MsG0580025526.01.T01 MTR_1g041240 27.063 303 198 12 155 447 199 488 1.08e-20 98.2
MsG0580025526.01.T01 MTR_2g087710 35.135 148 90 4 311 455 717 861 1.17e-16 85.1
MsG0580025526.01.T01 MTR_1g077980 36.842 152 89 5 311 458 765 913 1.36e-16 84.7
MsG0580025526.01.T01 MTR_7g088760 34.211 152 94 5 311 458 754 903 5.72e-16 82.8
MsG0580025526.01.T01 MTR_7g088760 34.211 152 94 5 311 458 771 920 6.09e-16 82.8
MsG0580025526.01.T01 MTR_3g083600 35.156 128 68 3 342 455 943 1069 1.12e-14 78.6
MsG0580025526.01.T01 MTR_3g083600 29.231 195 102 5 136 306 202 384 3.93e-12 70.5
MsG0580025526.01.T01 MTR_7g106570 33.108 148 94 4 311 455 742 887 1.53e-12 71.6
MsG0580025526.01.T01 MTR_4g077490 24.691 324 208 12 155 456 234 543 1.93e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025526.01.T01 AT4G17895 52.078 361 155 4 135 486 155 506 2.31e-115 363
MsG0580025526.01.T01 AT5G46740 38.151 595 305 14 147 696 155 731 5.21e-104 334
MsG0580025526.01.T01 AT5G46740 37.266 534 276 13 208 696 3 522 5.84e-85 278
MsG0580025526.01.T01 AT5G57990 42.857 315 158 6 153 455 105 409 5.67e-76 262
MsG0580025526.01.T01 AT5G65450 34.824 313 181 8 156 455 330 632 5.40e-48 181
MsG0580025526.01.T01 AT4G31670 34.700 317 180 9 155 455 168 473 5.71e-48 180
MsG0580025526.01.T01 AT3G14400 34.591 318 182 7 156 455 25 334 7.75e-48 180
MsG0580025526.01.T01 AT5G65450 34.824 313 181 8 156 455 349 651 8.71e-48 181
MsG0580025526.01.T01 AT2G24640 32.603 365 212 11 107 455 133 479 9.26e-48 180
MsG0580025526.01.T01 AT2G24640 34.385 317 181 9 155 455 4 309 2.81e-47 175
MsG0580025526.01.T01 AT1G17110 33.333 345 192 12 130 455 422 747 1.84e-43 169
MsG0580025526.01.T01 AT1G17110 33.333 345 192 12 130 455 418 743 1.85e-43 169
MsG0580025526.01.T01 AT1G17110 33.333 345 192 12 130 455 418 743 1.85e-43 169
MsG0580025526.01.T01 AT4G24560 31.646 316 188 10 156 455 543 846 2.17e-39 157
MsG0580025526.01.T01 AT2G22310 31.339 351 183 12 156 458 24 364 2.91e-34 135
MsG0580025526.01.T01 AT4G39910 30.532 357 181 12 156 457 24 368 5.07e-34 134
MsG0580025526.01.T01 AT5G10790 28.056 360 194 12 156 456 49 402 1.81e-29 122
MsG0580025526.01.T01 AT2G22310 30.383 339 178 12 168 458 4 332 3.66e-28 116
MsG0580025526.01.T01 AT5G10790 28.056 360 194 12 156 456 178 531 4.25e-28 120
MsG0580025526.01.T01 AT2G22310 31.690 284 141 9 223 458 49 327 4.59e-28 116
MsG0580025526.01.T01 AT4G30890 26.158 367 190 9 156 455 198 550 1.26e-25 112
MsG0580025526.01.T01 AT4G30890 26.158 367 190 9 156 455 198 550 1.26e-25 112
MsG0580025526.01.T01 AT4G30890 26.158 367 190 9 156 455 198 550 1.26e-25 112
MsG0580025526.01.T01 AT3G11910 28.105 306 193 13 142 437 188 476 2.67e-23 106
MsG0580025526.01.T01 AT3G11910 28.105 306 193 13 142 437 188 476 2.67e-23 106
MsG0580025526.01.T01 AT3G11910 28.105 306 193 13 142 437 189 477 2.74e-23 106
MsG0580025526.01.T01 AT3G11910 28.105 306 193 13 142 437 189 477 2.74e-23 106
MsG0580025526.01.T01 AT5G06600 28.105 306 193 13 142 437 190 478 1.43e-22 104
MsG0580025526.01.T01 AT5G06600 28.105 306 193 13 142 437 189 477 1.46e-22 103
MsG0580025526.01.T01 AT5G06600 28.105 306 193 13 142 437 190 478 1.60e-22 103
MsG0580025526.01.T01 AT3G49600 27.703 296 188 9 155 440 106 385 1.97e-20 97.4
MsG0580025526.01.T01 AT3G49600 27.703 296 188 9 155 440 106 385 1.97e-20 97.4
MsG0580025526.01.T01 AT3G49600 27.703 296 188 9 155 440 106 385 2.07e-20 97.1
MsG0580025526.01.T01 AT5G22030 35.811 148 90 4 311 455 723 868 6.61e-18 89.0
MsG0580025526.01.T01 AT5G22030 35.811 148 90 4 311 455 765 910 7.57e-18 89.0
MsG0580025526.01.T01 AT2G40930 34.667 150 92 5 311 456 769 916 1.01e-16 85.1
MsG0580025526.01.T01 AT2G40930 34.667 150 92 5 311 456 769 916 1.01e-16 85.1
MsG0580025526.01.T01 AT4G10590 38.255 149 85 5 311 455 748 893 3.22e-16 83.6
MsG0580025526.01.T01 AT4G10590 38.255 149 85 5 311 455 748 893 3.22e-16 83.6
MsG0580025526.01.T01 AT4G10590 38.255 149 85 5 311 455 748 893 3.22e-16 83.6
MsG0580025526.01.T01 AT4G10590 38.255 149 85 5 311 455 748 893 3.22e-16 83.6
MsG0580025526.01.T01 AT4G10570 38.255 149 85 6 311 455 749 894 1.45e-15 81.6
MsG0580025526.01.T01 AT4G10570 29.630 216 113 6 138 319 285 495 1.33e-11 68.6
MsG0580025526.01.T01 AT1G32850 36.913 149 87 6 311 455 734 879 1.76e-15 81.3
MsG0580025526.01.T01 AT1G04860 33.951 162 84 4 156 304 232 383 2.50e-13 74.3
MsG0580025526.01.T01 AT1G04860 31.452 124 74 3 342 455 834 956 1.03e-11 68.9
MsG0580025526.01.T01 AT2G32780 29.518 166 94 4 156 306 203 360 1.36e-11 68.9
MsG0580025526.01.T01 AT4G22350 24.149 323 210 11 155 456 229 537 3.42e-11 67.0
MsG0580025526.01.T01 AT4G22350 24.149 323 210 11 155 456 200 508 3.56e-11 66.6

Find 159 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAAACTTCATCCTTTA+AGG 0.041402 5:+19999120 None:intergenic
ACCTTTAGATTGGGAATTTC+AGG 0.151939 5:-19998328 MsG0580025526.01.T01:intron
CTGTCTTAAACCTCTTTAAA+TGG 0.207305 5:+19997547 None:intergenic
AGTTAATTCTACTCGGATTT+TGG 0.210552 5:-19999218 MsG0580025526.01.T01:CDS
TGCTCAATTGGGTATTTCTT+TGG 0.217652 5:-19999428 MsG0580025526.01.T01:CDS
AAACAGTCCTTGCAGTTTAC+TGG 0.245751 5:-19998262 MsG0580025526.01.T01:CDS
AGACTTCTCAGAAAATTCTT+TGG 0.249608 5:+19996712 None:intergenic
ATTGAGAGAAAGAGAAGTTT+AGG 0.251577 5:+19999585 None:intergenic
ATGGTGATTTGTCAGATATT+TGG 0.280681 5:-19999279 MsG0580025526.01.T01:CDS
AGTTTCTGAGCCTGAGGATA+TGG 0.283386 5:-19999362 MsG0580025526.01.T01:CDS
AATATTGTGAAGAAAGTCTT+TGG 0.320644 5:-19997904 MsG0580025526.01.T01:CDS
AACCGTAGATCCTGCTCAAT+TGG 0.346549 5:-19999440 MsG0580025526.01.T01:CDS
TATGATTCTGATTCTAAAGT+TGG 0.348463 5:-19999103 MsG0580025526.01.T01:CDS
TTGGGAATTTCAGGTCATAA+TGG 0.374228 5:-19998319 MsG0580025526.01.T01:CDS
TGAAATGATGAAACAAATAG+AGG 0.376376 5:+19999652 None:intergenic
AAAATCCGAGTAGAATTAAC+TGG 0.376969 5:+19999220 None:intergenic
TCAAATGATCGCGTGAGATC+TGG 0.390392 5:+19996278 None:intergenic
TGGGAATTTCAGGTCATAAT+GGG 0.391890 5:-19998318 MsG0580025526.01.T01:CDS
TGCCGCAAACAAGTTCCTGC+TGG 0.392129 5:-19996626 MsG0580025526.01.T01:CDS
GAAAGTCTTTGGAGGCAGTT+TGG 0.392748 5:-19997893 MsG0580025526.01.T01:CDS
TATGCAGTTGTTGTGCATAA+TGG 0.393951 5:-19997335 MsG0580025526.01.T01:CDS
GGCAGCTACCCTGTGGCAGC+TGG 0.397430 5:-19996025 MsG0580025526.01.T01:CDS
AGCAGTGCTCGCAAGAAATC+AGG 0.399732 5:-19996061 MsG0580025526.01.T01:CDS
CTGCAATGAAGAAGTGTCTA+TGG 0.405794 5:-19997613 MsG0580025526.01.T01:CDS
TTCTGATTTGATGGCCCAGC+AGG 0.410077 5:+19996611 None:intergenic
TCCGGTGGATACCAAGCTTC+CGG 0.412997 5:+19999187 None:intergenic
AAAACCAAGGTGTGCCTTGT+CGG 0.413813 5:+19996879 None:intergenic
GTGAATTATGCCAGCCCGAC+TGG 0.419613 5:-19996539 MsG0580025526.01.T01:CDS
CGAGTAGAATTAACTGGAAC+CGG 0.424615 5:+19999226 None:intergenic
ATGATTCTGATTCTAAAGTT+GGG 0.433621 5:-19999102 MsG0580025526.01.T01:CDS
TACAACCAGTTCTCATCATC+AGG 0.433784 5:+19999157 None:intergenic
GACGTTTATGTTGATGTTGT+CGG 0.434418 5:-19999385 MsG0580025526.01.T01:CDS
TGGCTGTGCCGCCGGAAGCT+TGG 0.438381 5:-19999198 MsG0580025526.01.T01:CDS
TCCTCTTACTCACCATCATT+AGG 0.442960 5:+19998469 None:intergenic
AAATAGAAAATGATTTATCC+TGG 0.443696 5:+19996771 None:intergenic
CTTTGCAATGCCAGTCGGGC+TGG 0.444918 5:+19996529 None:intergenic
CGGTTCCAGTTAATTCTACT+CGG 0.445652 5:-19999225 MsG0580025526.01.T01:CDS
GATTTGTCAGATATTTGGCC+GGG 0.446194 5:-19999274 MsG0580025526.01.T01:CDS
GCTGCTGTCTTTGTCCGACT+TGG 0.449405 5:+19996081 None:intergenic
AGATATTTGGCCGGGGCCGA+TGG 0.453647 5:-19999266 MsG0580025526.01.T01:CDS
AAATGGAATGCAGCAATTGA+AGG 0.458769 5:+19997564 None:intergenic
CAGGCTTTGCAATGCCAGTC+GGG 0.460520 5:+19996525 None:intergenic
AAGCTGCCAGGGCATATGTT+AGG 0.462405 5:-19996186 MsG0580025526.01.T01:CDS
GGTAATTATTCAGGTAACTA+AGG 0.467491 5:-19996951 MsG0580025526.01.T01:intron
TGAAGGGACTGTGCTGTCTC+AGG 0.467824 5:-19996924 MsG0580025526.01.T01:CDS
TATCAATTTCCCACTGGAGT+TGG 0.469397 5:-19997493 MsG0580025526.01.T01:CDS
AATGGAACTTCATCTGACTC+TGG 0.470300 5:-19997317 MsG0580025526.01.T01:CDS
AAACCAAGGTGTGCCTTGTC+GGG 0.471326 5:+19996880 None:intergenic
GTTTCTGAGCCTGAGGATAT+GGG 0.471454 5:-19999361 MsG0580025526.01.T01:CDS
CATAATTCACAGGTAGCACT+TGG 0.473153 5:+19996552 None:intergenic
ACCGTAGATCCTGCTCAATT+GGG 0.475265 5:-19999439 MsG0580025526.01.T01:CDS
AGCTGCCATTCTCCTAATGA+TGG 0.476167 5:-19998481 MsG0580025526.01.T01:CDS
GCAAAAGTTGGATGATTCAA+TGG 0.479441 5:-19997255 MsG0580025526.01.T01:intron
AATATTGAAAAGAGTGGGGC+TGG 0.480181 5:-19996740 MsG0580025526.01.T01:CDS
TTGCTGCATTCCATTTAAAG+AGG 0.480468 5:-19997557 MsG0580025526.01.T01:CDS
AATGAAAATATTGAAAAGAG+TGG 0.488221 5:-19996746 MsG0580025526.01.T01:CDS
ATGAAAATATTGAAAAGAGT+GGG 0.488375 5:-19996745 MsG0580025526.01.T01:CDS
TTTAGACATCACTGATGGCC+AGG 0.488436 5:-19996789 MsG0580025526.01.T01:CDS
GAAGAAATGAAATTCTTGGT+TGG 0.491050 5:+19999613 None:intergenic
ATCTCGCTGCGGAACATCAC+CGG 0.496487 5:+19999303 None:intergenic
CAAAAGAAGACCCTCGACTA+GGG 0.498254 5:+19998504 None:intergenic
TCTAGACTTAGGTCAATCAA+TGG 0.498501 5:+19997720 None:intergenic
CTCTCTATTATCTTCTCTCG+TGG 0.500752 5:+19999794 None:intergenic
GCCCAGCAGGAACTTGTTTG+CGG 0.500874 5:+19996624 None:intergenic
AGATACTATTTCAAGTGCAT+TGG 0.502024 5:-19997685 MsG0580025526.01.T01:CDS
ATCCTCAAAATAAAGCTGCC+AGG 0.504847 5:-19996198 MsG0580025526.01.T01:CDS
ACAGCAAGATCCATCGGCCC+CGG 0.506375 5:+19999256 None:intergenic
GATGTTCCGCAGCGAGATCA+TGG 0.509643 5:-19999298 MsG0580025526.01.T01:CDS
AAATCTTCATTTGAATGGAT+CGG 0.510400 5:-19996588 MsG0580025526.01.T01:CDS
CCGACTGGCATTGCAAAGCC+TGG 0.513078 5:-19996524 MsG0580025526.01.T01:CDS
ATCATCATCAGGCAAGTCTT+CGG 0.514591 5:-19996224 MsG0580025526.01.T01:CDS
ATGCTCCTGATGATGAGAAC+TGG 0.515150 5:-19999162 MsG0580025526.01.T01:CDS
AGTGGTAAAAGATCATCATC+AGG 0.517890 5:-19996235 MsG0580025526.01.T01:CDS
TATCTCCCCTGTGGTATTCG+TGG 0.519071 5:-19998233 MsG0580025526.01.T01:CDS
TCATCATCAGGAGCATAATC+CGG 0.519460 5:+19999169 None:intergenic
CCAGGCTTTGCAATGCCAGT+CGG 0.519525 5:+19996524 None:intergenic
AAAGCATGTGTTACCAAGGT+TGG 0.521069 5:+19998564 None:intergenic
TGTGAAACTCCAGCTGCCAC+AGG 0.523773 5:+19996016 None:intergenic
ACTCACCATCATTAGGAGAA+TGG 0.528124 5:+19998476 None:intergenic
GCCGCAAACAAGTTCCTGCT+GGG 0.528262 5:-19996625 MsG0580025526.01.T01:CDS
TGGAGGCAGTTTGGTTAGCA+AGG 0.528538 5:-19997884 MsG0580025526.01.T01:intron
TGAGTTTATGCAGTGTGCAT+TGG 0.528922 5:-19997965 MsG0580025526.01.T01:CDS
CAATCACCTGGAGTCTGAGA+AGG 0.530275 5:+19996389 None:intergenic
TTAGGAATATGCCTGGTTCA+AGG 0.531245 5:-19996168 MsG0580025526.01.T01:CDS
GTCGGGCTGGCATAATTCAC+AGG 0.532843 5:+19996542 None:intergenic
TCAAAAGAAGACCCTCGACT+AGG 0.540121 5:+19998503 None:intergenic
CTGGCATTGCAAAGCCTGGT+GGG 0.544914 5:-19996520 MsG0580025526.01.T01:CDS
AATCACCTGGAGTCTGAGAA+GGG 0.545095 5:+19996390 None:intergenic
ACCCAATTGAGCAGGATCTA+CGG 0.547215 5:+19999438 None:intergenic
GGTAGCTGCCGACGGAAGCA+TGG 0.550788 5:+19996038 None:intergenic
TGATTTGTCAGATATTTGGC+CGG 0.551375 5:-19999275 MsG0580025526.01.T01:CDS
TTGGTTAAGCCCATATCCTC+AGG 0.551945 5:+19999352 None:intergenic
GCCGGAAGCTTGGTATCCAC+CGG 0.552170 5:-19999188 MsG0580025526.01.T01:CDS
CAGGTAACTAAGGTATCTGA+AGG 0.552413 5:-19996941 MsG0580025526.01.T01:CDS
TATGGAGAAGCAGCTTATGT+TGG 0.552768 5:-19997595 MsG0580025526.01.T01:CDS
AGTGATGTCTAAAACAGACT+TGG 0.553424 5:+19996799 None:intergenic
AAAACGCTTACAATCGTCAA+TGG 0.553452 5:+19999079 None:intergenic
GGAGCTGGGCTTGCCAACCT+TGG 0.555047 5:-19998577 MsG0580025526.01.T01:CDS
ATGGAACTTCATCTGACTCT+GGG 0.557189 5:-19997316 MsG0580025526.01.T01:CDS
TCCAGACACATGGCAAAAGT+TGG 0.557241 5:-19997267 MsG0580025526.01.T01:CDS
ACAGAGAAGCAAGGAAGTAG+TGG 0.558974 5:-19996253 MsG0580025526.01.T01:CDS
ACCTGGAGTCTGAGAAGGGG+GGG 0.559134 5:+19996394 None:intergenic
TGCCACAGGGTAGCTGCCGA+CGG 0.563195 5:+19996030 None:intergenic
GCATACTGTGCCCCTAGTCG+AGG 0.564517 5:-19998515 MsG0580025526.01.T01:CDS
AAATTATCCACGAATACCAC+AGG 0.565734 5:+19998226 None:intergenic
TCAGCATATGAACTCCCACC+AGG 0.567820 5:+19996506 None:intergenic
GCAGGAACTTGTTTGCGGCA+AGG 0.568113 5:+19996629 None:intergenic
TCACCTGGAGTCTGAGAAGG+GGG 0.569077 5:+19996392 None:intergenic
TCCTCAAAATAAAGCTGCCA+GGG 0.569220 5:-19996197 MsG0580025526.01.T01:CDS
AAAGAAATACCCAATTGAGC+AGG 0.570044 5:+19999430 None:intergenic
GAAATGATGAAACAAATAGA+GGG 0.571804 5:+19999653 None:intergenic
CACAGACATAAACTCATCGT+TGG 0.578678 5:+19999333 None:intergenic
CATATTCCTAACATATGCCC+TGG 0.580915 5:+19996180 None:intergenic
GCATATGTTAGGAATATGCC+TGG 0.584399 5:-19996175 MsG0580025526.01.T01:CDS
CAAGCATATCAATTTCCCAC+TGG 0.585157 5:-19997499 MsG0580025526.01.T01:CDS
ATTGTGAAGAAAGTCTTTGG+AGG 0.585535 5:-19997901 MsG0580025526.01.T01:CDS
TGCATTGGAGTCTTTCACAA+TGG 0.585606 5:-19997670 MsG0580025526.01.T01:CDS
AATGCACCTCTCCTTGAACC+AGG 0.588351 5:+19996157 None:intergenic
TTCGCACTGCTCCAGACACA+TGG 0.588758 5:-19997277 MsG0580025526.01.T01:CDS
GCATACACAGCAAGATCCAT+CGG 0.590600 5:+19999250 None:intergenic
TGAAAATATTGAAAAGAGTG+GGG 0.594431 5:-19996744 MsG0580025526.01.T01:CDS
GGATCTTGCTGTGTATGCTC+CGG 0.600782 5:-19999245 MsG0580025526.01.T01:CDS
ATTTGTCAGATATTTGGCCG+GGG 0.604300 5:-19999273 MsG0580025526.01.T01:CDS
GTGATGTCTAAAACAGACTT+GGG 0.604740 5:+19996800 None:intergenic
ATGCCCGACAAGGCACACCT+TGG 0.606806 5:-19996883 MsG0580025526.01.T01:CDS
TGATGCTAAGATTAAATGTG+AGG 0.612633 5:-19997637 MsG0580025526.01.T01:CDS
ATCACCTGGAGTCTGAGAAG+GGG 0.616978 5:+19996391 None:intergenic
TGAGAAAGCATGTGTTACCA+AGG 0.617381 5:+19998560 None:intergenic
AACTCTTCCAGTAAACTGCA+AGG 0.624220 5:+19998255 None:intergenic
AAAGACTGATTCATCCAAGT+CGG 0.626726 5:-19996095 MsG0580025526.01.T01:CDS
GCTCATTAGTGTCAGAAGAG+TGG 0.628120 5:+19997742 None:intergenic
AAATCAGGCCATGCTTCCGT+CGG 0.629660 5:-19996046 MsG0580025526.01.T01:CDS
GTGAAACTCCAGCTGCCACA+GGG 0.630296 5:+19996017 None:intergenic
ATCCTACTCAGATTCAAGCA+TGG 0.632686 5:+19996833 None:intergenic
CATACTGTGCCCCTAGTCGA+GGG 0.636860 5:-19998514 MsG0580025526.01.T01:CDS
AATATGCCTGGTTCAAGGAG+AGG 0.638632 5:-19996163 MsG0580025526.01.T01:CDS
GGTTGCAAATCCAACTCCAG+TGG 0.642634 5:+19997483 None:intergenic
TTCCATGCTTGAATCTGAGT+AGG 0.644297 5:-19996835 MsG0580025526.01.T01:CDS
ATAATTCACAGGTAGCACTT+GGG 0.648379 5:+19996553 None:intergenic
TGTCGGAGTTTCTGAGCCTG+AGG 0.652877 5:-19999368 MsG0580025526.01.T01:CDS
AAAAGAAGACCCTCGACTAG+GGG 0.658717 5:+19998505 None:intergenic
TTCCGTCGGCAGCTACCCTG+TGG 0.662854 5:-19996032 MsG0580025526.01.T01:CDS
ACTGGCATTGCAAAGCCTGG+TGG 0.663624 5:-19996521 MsG0580025526.01.T01:CDS
GTTGCAAATCCAACTCCAGT+GGG 0.671853 5:+19997484 None:intergenic
AGGTAACTAAGGTATCTGAA+GGG 0.674479 5:-19996940 MsG0580025526.01.T01:CDS
TGTTGTTCTTGTTCACCACG+TGG 0.675934 5:+19999508 None:intergenic
CACCTGGAGTCTGAGAAGGG+GGG 0.678451 5:+19996393 None:intergenic
AGGACTGTTTCATCTGATAG+CGG 0.680625 5:+19998275 None:intergenic
TCCGCAAAACTTGAAAACCA+AGG 0.687758 5:+19996866 None:intergenic
TCATCAGGAGCATAATCCGG+TGG 0.690832 5:+19999172 None:intergenic
GATGCTAAGATTAAATGTGA+GGG 0.695012 5:-19997636 MsG0580025526.01.T01:CDS
GGTGGATACCAAGCTTCCGG+CGG 0.695616 5:+19999190 None:intergenic
TTTATGTCTGTGATGTACAC+CGG 0.696550 5:-19999322 MsG0580025526.01.T01:CDS
TGGAAGAGTTATCTCCCCTG+TGG 0.704661 5:-19998242 MsG0580025526.01.T01:CDS
AATTATCCACGAATACCACA+GGG 0.705529 5:+19998227 None:intergenic
CATTTGAAGACAGAGAAGCA+AGG 0.707732 5:-19996262 MsG0580025526.01.T01:CDS
AAATCACCATGATCTCGCTG+CGG 0.737924 5:+19999292 None:intergenic
TCTGATTCAAATTCACCACG+TGG 0.785823 5:-19999523 MsG0580025526.01.T01:CDS
ATTATCCACGAATACCACAG+GGG 0.824419 5:+19998228 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAACCTTATATTAATTAA+AGG + Chr5:19997749-19997768 None:intergenic 15.0%
!! TAGAACCTTTAATTAATATA+AGG - Chr5:19997741-19997760 MsG0580025526.01.T01:CDS 15.0%
!!! TTTTGTGATTTAAATGTATA+TGG - Chr5:19997377-19997396 MsG0580025526.01.T01:intron 15.0%
!! AAATAGAAAATGATTTATCC+TGG + Chr5:19999050-19999069 None:intergenic 20.0%
!! AATGAAAATATTGAAAAGAG+TGG - Chr5:19999072-19999091 MsG0580025526.01.T01:intron 20.0%
!! ACATGTTTAATGATAAAAGT+TGG - Chr5:19998639-19998658 MsG0580025526.01.T01:intron 20.0%
!! ATGAAAATATTGAAAAGAGT+GGG - Chr5:19999073-19999092 MsG0580025526.01.T01:intron 20.0%
!! GCACAAACAATTAATATTAA+AGG + Chr5:19997164-19997183 None:intergenic 20.0%
!! TTTATTTAACACGTAATATC+TGG - Chr5:19998846-19998865 MsG0580025526.01.T01:intron 20.0%
!!! ACATTGAAATTTTGAAAGTT+AGG + Chr5:19996276-19996295 None:intergenic 20.0%
!!! CATTGAAATTTTGAAAGTTA+GGG + Chr5:19996275-19996294 None:intergenic 20.0%
!!! TTTTCATTCAAAATAGTGTA+AGG + Chr5:19998359-19998378 None:intergenic 20.0%
!!! TTTTGAAGAAATGAAATTCT+TGG + Chr5:19996212-19996231 None:intergenic 20.0%
! AAAAGTTTCAAAAAGTGAAG+AGG + Chr5:19996138-19996157 None:intergenic 25.0%
! AAAGTTTCAAAAAGTGAAGA+GGG + Chr5:19996137-19996156 None:intergenic 25.0%
! AAATCTTCATTTGAATGGAT+CGG - Chr5:19999230-19999249 MsG0580025526.01.T01:CDS 25.0%
! AATATTGTGAAGAAAGTCTT+TGG - Chr5:19997914-19997933 MsG0580025526.01.T01:CDS 25.0%
! AGTAGTGAGTGTTATATTAT+TGG - Chr5:19997707-19997726 MsG0580025526.01.T01:CDS 25.0%
! AGTTTGCAAAAACAGTAAAA+TGG + Chr5:19998747-19998766 None:intergenic 25.0%
! ATCATAAACTTCATCCTTTA+AGG + Chr5:19996701-19996720 None:intergenic 25.0%
! ATTAATTGTTTGTGCTACAT+AGG - Chr5:19997169-19997188 MsG0580025526.01.T01:intron 25.0%
! ATTTAGATCAAATATGTGTC+TGG + Chr5:19996988-19997007 None:intergenic 25.0%
! CAGAAAAATCTTCATTTGAA+TGG - Chr5:19999225-19999244 MsG0580025526.01.T01:CDS 25.0%
! GAAATGATGAAACAAATAGA+GGG + Chr5:19996168-19996187 None:intergenic 25.0%
! GAAGCTGAAAAATAAATACA+AGG + Chr5:19998040-19998059 None:intergenic 25.0%
! GGCTTATTTAATAATTGCAT+TGG - Chr5:19998805-19998824 MsG0580025526.01.T01:intron 25.0%
! GTAATATCTGGTAATTATTC+AGG - Chr5:19998858-19998877 MsG0580025526.01.T01:intron 25.0%
! TAGAATTGTCTGTCATTAAT+TGG - Chr5:19997678-19997697 MsG0580025526.01.T01:CDS 25.0%
! TATCCTTAATACCATATTCA+TGG - Chr5:19997621-19997640 MsG0580025526.01.T01:CDS 25.0%
! TCAGTATAAAGAATTCACAA+GGG + Chr5:19998422-19998441 None:intergenic 25.0%
! TGAAAATATTGAAAAGAGTG+GGG - Chr5:19999074-19999093 MsG0580025526.01.T01:intron 25.0%
! TGAAATGATGAAACAAATAG+AGG + Chr5:19996169-19996188 None:intergenic 25.0%
! TTTCCATGAATATGGTATTA+AGG + Chr5:19997627-19997646 None:intergenic 25.0%
!! AAAAAGTATATTCAATCACC+TGG + Chr5:19999444-19999463 None:intergenic 25.0%
!! ATTAATATTAAAGGTGTGTC+TGG + Chr5:19997155-19997174 None:intergenic 25.0%
!! GTTTTCTTTGCATATAGTTA+GGG - Chr5:19998784-19998803 MsG0580025526.01.T01:intron 25.0%
!! TCAATAACATCATCATTTTC+AGG + Chr5:19999162-19999181 None:intergenic 25.0%
!! TGTTTTCTTTGCATATAGTT+AGG - Chr5:19998783-19998802 MsG0580025526.01.T01:intron 25.0%
!! TTAAAGGTTCTATATTTTGC+AGG + Chr5:19997733-19997752 None:intergenic 25.0%
!! TTAATATTAAAGGTGTGTCT+GGG + Chr5:19997154-19997173 None:intergenic 25.0%
!! TTGCATATCTTTTCAATGAA+AGG - Chr5:19997652-19997671 MsG0580025526.01.T01:CDS 25.0%
!!! AAGATTTTGACCTTTAGATT+GGG - Chr5:19997481-19997500 MsG0580025526.01.T01:CDS 25.0%
!!! AGGTTAGTTTCTTTTACTTT+TGG - Chr5:19997761-19997780 MsG0580025526.01.T01:CDS 25.0%
!!! ATGATTCTGATTCTAAAGTT+GGG - Chr5:19996716-19996735 MsG0580025526.01.T01:CDS 25.0%
!!! ATGTTTTTCAAATTTTGAGG+AGG - Chr5:19997889-19997908 MsG0580025526.01.T01:CDS 25.0%
!!! CATTTTCTATTTCTAGACTT+AGG + Chr5:19998112-19998131 None:intergenic 25.0%
!!! GACATGTTTTTCAAATTTTG+AGG - Chr5:19997886-19997905 MsG0580025526.01.T01:CDS 25.0%
!!! GGTGATTGAATATACTTTTT+TGG - Chr5:19999444-19999463 MsG0580025526.01.T01:CDS 25.0%
!!! TATGATTCTGATTCTAAAGT+TGG - Chr5:19996715-19996734 MsG0580025526.01.T01:CDS 25.0%
!!! TCTTGGTTGGTTTTAAATTA+GGG + Chr5:19996195-19996214 None:intergenic 25.0%
!!! TCTTTTTTCTCTTGTTTTCT+GGG + Chr5:19999708-19999727 None:intergenic 25.0%
!!! TGAAGATTTTTCTGATTTGA+TGG + Chr5:19999219-19999238 None:intergenic 25.0%
!!! TGATTTTAAGGAATCCTTAA+AGG - Chr5:19996684-19996703 MsG0580025526.01.T01:CDS 25.0%
!!! TTAGTTTCTTTTACTTTTGG+TGG - Chr5:19997764-19997783 MsG0580025526.01.T01:CDS 25.0%
!!! TTCCTGAGACATTTTTATTT+TGG - Chr5:19996075-19996094 MsG0580025526.01.T01:CDS 25.0%
!!! TTCTTGGTTGGTTTTAAATT+AGG + Chr5:19996196-19996215 None:intergenic 25.0%
AAAAGTTGGCTGTAACTTTA+TGG - Chr5:19998653-19998672 MsG0580025526.01.T01:intron 30.0%
AAAATCCGAGTAGAATTAAC+TGG + Chr5:19996601-19996620 None:intergenic 30.0%
AATCACTGATACAAAATCAC+AGG + Chr5:19997088-19997107 None:intergenic 30.0%
AATTCAGATCAATTGTGTGT+CGG + Chr5:19996900-19996919 None:intergenic 30.0%
AGACTTCTCAGAAAATTCTT+TGG + Chr5:19999109-19999128 None:intergenic 30.0%
AGAGGGAAAAGCTAAAAAAT+TGG + Chr5:19996103-19996122 None:intergenic 30.0%
ATCCAGATTAAATGTGTGTT+TGG + Chr5:19997063-19997082 None:intergenic 30.0%
ATGCCTGTCAACATAAAAAA+TGG + Chr5:19998446-19998465 None:intergenic 30.0%
ATTGAGAGAAAGAGAAGTTT+AGG + Chr5:19996236-19996255 None:intergenic 30.0%
CAAGAAAGTTTCCATGAATA+TGG + Chr5:19997635-19997654 None:intergenic 30.0%
CACCAAAATAAAAATGTCTC+AGG + Chr5:19996080-19996099 None:intergenic 30.0%
CATACCATTCTGAATCAAAA+AGG + Chr5:19997997-19998016 None:intergenic 30.0%
CTGTCTTAAACCTCTTTAAA+TGG + Chr5:19998274-19998293 None:intergenic 30.0%
GAAAATTCTGATACAAGTCA+TGG + Chr5:19997797-19997816 None:intergenic 30.0%
GAAGAAATGAAATTCTTGGT+TGG + Chr5:19996208-19996227 None:intergenic 30.0%
GATGCTAAGATTAAATGTGA+GGG - Chr5:19998182-19998201 MsG0580025526.01.T01:intron 30.0%
GGTAATTATTCAGGTAACTA+AGG - Chr5:19998867-19998886 MsG0580025526.01.T01:intron 30.0%
GTCAGTATAAAGAATTCACA+AGG + Chr5:19998423-19998442 None:intergenic 30.0%
TCTGTTATACTTGTTCTACT+TGG - Chr5:19998591-19998610 MsG0580025526.01.T01:intron 30.0%
TGATAAAAACAAATGCAGTC+TGG - Chr5:19999347-19999366 MsG0580025526.01.T01:CDS 30.0%
TGATGCTAAGATTAAATGTG+AGG - Chr5:19998181-19998200 MsG0580025526.01.T01:intron 30.0%
TGCCTGTCAACATAAAAAAT+GGG + Chr5:19998445-19998464 None:intergenic 30.0%
TTGTTCAATAACCATTGAGA+TGG - Chr5:19999498-19999517 MsG0580025526.01.T01:CDS 30.0%
! AGATACTATTTCAAGTGCAT+TGG - Chr5:19998133-19998152 MsG0580025526.01.T01:intron 30.0%
! AGTTAATTCTACTCGGATTT+TGG - Chr5:19996600-19996619 MsG0580025526.01.T01:CDS 30.0%
! ATGGTGATTTGTCAGATATT+TGG - Chr5:19996539-19996558 MsG0580025526.01.T01:CDS 30.0%
! GAACTGGTTGTATGATTTTA+AGG - Chr5:19996672-19996691 MsG0580025526.01.T01:CDS 30.0%
! TAATATTAAAGGTGTGTCTG+GGG + Chr5:19997153-19997172 None:intergenic 30.0%
!! CTACATAGGTTTTGTCTTTT+TGG - Chr5:19997183-19997202 MsG0580025526.01.T01:intron 30.0%
!! GAAGATTTTGACCTTTAGAT+TGG - Chr5:19997480-19997499 MsG0580025526.01.T01:CDS 30.0%
!! TTTTAGAAGACATATGCAAG+AGG - Chr5:19997823-19997842 MsG0580025526.01.T01:intron 30.0%
!!! AGACTGCATTTGTTTTTATC+AGG + Chr5:19999348-19999367 None:intergenic 30.0%
!!! CTTTTTTCTCTTGTTTTCTG+GGG + Chr5:19999707-19999726 None:intergenic 30.0%
!!! GTCTTTTTTCTCTTGTTTTC+TGG + Chr5:19999709-19999728 None:intergenic 30.0%
!!! TTTCCTCAAGATTTTTTCCT+AGG - Chr5:19998694-19998713 MsG0580025526.01.T01:intron 30.0%
AAAACGCTTACAATCGTCAA+TGG + Chr5:19996742-19996761 None:intergenic 35.0%
AAAGAAATACCCAATTGAGC+AGG + Chr5:19996391-19996410 None:intergenic 35.0%
AAATGGAATGCAGCAATTGA+AGG + Chr5:19998257-19998276 None:intergenic 35.0%
AAATTATCCACGAATACCAC+AGG + Chr5:19997595-19997614 None:intergenic 35.0%
AATTATCCACGAATACCACA+GGG + Chr5:19997594-19997613 None:intergenic 35.0%
ACCTGAAATTCCCAATCTAA+AGG + Chr5:19997494-19997513 None:intergenic 35.0%
ACCTTTAGATTGGGAATTTC+AGG - Chr5:19997490-19997509 MsG0580025526.01.T01:CDS 35.0%
AGTGGTAAAAGATCATCATC+AGG - Chr5:19999583-19999602 MsG0580025526.01.T01:five_prime_UTR 35.0%
AGTTTCAAGCTATGAAGACT+GGG + Chr5:19998722-19998741 None:intergenic 35.0%
ATAATTCACAGGTAGCACTT+GGG + Chr5:19999268-19999287 None:intergenic 35.0%
ATTCAGATCAATTGTGTGTC+GGG + Chr5:19996899-19996918 None:intergenic 35.0%
ATTGTGAAGAAAGTCTTTGG+AGG - Chr5:19997917-19997936 MsG0580025526.01.T01:CDS 35.0%
CACCAAACACACATTTAATC+TGG - Chr5:19997058-19997077 MsG0580025526.01.T01:intron 35.0%
CTGAATTGTATGTGCTACAT+AGG - Chr5:19996913-19996932 MsG0580025526.01.T01:CDS 35.0%
GACGTTTATGTTGATGTTGT+CGG - Chr5:19996433-19996452 MsG0580025526.01.T01:CDS 35.0%
GCAAAAGTTGGATGATTCAA+TGG - Chr5:19998563-19998582 MsG0580025526.01.T01:CDS 35.0%
TAGTTTCAAGCTATGAAGAC+TGG + Chr5:19998723-19998742 None:intergenic 35.0%
TATGCAGTTGTTGTGCATAA+TGG - Chr5:19998483-19998502 MsG0580025526.01.T01:CDS 35.0%
TCTAGACTTAGGTCAATCAA+TGG + Chr5:19998101-19998120 None:intergenic 35.0%
TGCTCAATTGGGTATTTCTT+TGG - Chr5:19996390-19996409 MsG0580025526.01.T01:intron 35.0%
TTGCTGCATTCCATTTAAAG+AGG - Chr5:19998261-19998280 MsG0580025526.01.T01:CDS 35.0%
TTTATGTCTGTGATGTACAC+CGG - Chr5:19996496-19996515 MsG0580025526.01.T01:CDS 35.0%
! AAAGACTGATTCATCCAAGT+CGG - Chr5:19999723-19999742 MsG0580025526.01.T01:five_prime_UTR 35.0%
! AGGTAACTAAGGTATCTGAA+GGG - Chr5:19998878-19998897 MsG0580025526.01.T01:intron 35.0%
! AGTGATGTCTAAAACAGACT+TGG + Chr5:19999022-19999041 None:intergenic 35.0%
! GTGATGTCTAAAACAGACTT+GGG + Chr5:19999021-19999040 None:intergenic 35.0%
! TGACGATCTTTTGTTCAACA+GGG - Chr5:19997220-19997239 MsG0580025526.01.T01:intron 35.0%
! TGATTTGTCAGATATTTGGC+CGG - Chr5:19996543-19996562 MsG0580025526.01.T01:CDS 35.0%
! TGGGAATTTCAGGTCATAAT+GGG - Chr5:19997500-19997519 MsG0580025526.01.T01:CDS 35.0%
! TTGACGATCTTTTGTTCAAC+AGG - Chr5:19997219-19997238 MsG0580025526.01.T01:intron 35.0%
! TTGGGAATTTCAGGTCATAA+TGG - Chr5:19997499-19997518 MsG0580025526.01.T01:CDS 35.0%
!! AAGAGGGATTTTGAAAGAAG+AGG + Chr5:19996121-19996140 None:intergenic 35.0%
!! AGAGGGATTTTGAAAGAAGA+GGG + Chr5:19996120-19996139 None:intergenic 35.0%
!! ATATTGTTTTATGCCCGACA+AGG - Chr5:19998925-19998944 MsG0580025526.01.T01:intron 35.0%
!! GTCTCCTTTTTGATTCAGAA+TGG - Chr5:19997990-19998009 MsG0580025526.01.T01:CDS 35.0%
!! TCTGTTTTAGACATCACTGA+TGG - Chr5:19999024-19999043 MsG0580025526.01.T01:intron 35.0%
!!! ACCTTGGTTTTCAAGTTTTG+CGG - Chr5:19998951-19998970 MsG0580025526.01.T01:intron 35.0%
!!! GACCCATTTTTTATGTTGAC+AGG - Chr5:19998440-19998459 MsG0580025526.01.T01:intron 35.0%
AAACAGTCCTTGCAGTTTAC+TGG - Chr5:19997556-19997575 MsG0580025526.01.T01:CDS 40.0%
AAAGCATGTGTTACCAAGGT+TGG + Chr5:19997257-19997276 None:intergenic 40.0%
AACTCTTCCAGTAAACTGCA+AGG + Chr5:19997566-19997585 None:intergenic 40.0%
AATATTGAAAAGAGTGGGGC+TGG - Chr5:19999078-19999097 MsG0580025526.01.T01:intron 40.0%
AATGGAACTTCATCTGACTC+TGG - Chr5:19998501-19998520 MsG0580025526.01.T01:CDS 40.0%
ACCTGACAAATCCATCTCAA+TGG + Chr5:19999512-19999531 None:intergenic 40.0%
ACTCACCATCATTAGGAGAA+TGG + Chr5:19997345-19997364 None:intergenic 40.0%
AGGACTGTTTCATCTGATAG+CGG + Chr5:19997546-19997565 None:intergenic 40.0%
ATCATCATCAGGCAAGTCTT+CGG - Chr5:19999594-19999613 MsG0580025526.01.T01:five_prime_UTR 40.0%
ATCCTACTCAGATTCAAGCA+TGG + Chr5:19998988-19999007 None:intergenic 40.0%
ATCCTCAAAATAAAGCTGCC+AGG - Chr5:19999620-19999639 MsG0580025526.01.T01:five_prime_UTR 40.0%
ATGGAACTTCATCTGACTCT+GGG - Chr5:19998502-19998521 MsG0580025526.01.T01:CDS 40.0%
ATTATCCACGAATACCACAG+GGG + Chr5:19997593-19997612 None:intergenic 40.0%
ATTTGTCAGATATTTGGCCG+GGG - Chr5:19996545-19996564 MsG0580025526.01.T01:CDS 40.0%
CAAGCATATCAATTTCCCAC+TGG - Chr5:19998319-19998338 MsG0580025526.01.T01:CDS 40.0%
CACAGACATAAACTCATCGT+TGG + Chr5:19996488-19996507 None:intergenic 40.0%
CATAATTCACAGGTAGCACT+TGG + Chr5:19999269-19999288 None:intergenic 40.0%
CATATTCCTAACATATGCCC+TGG + Chr5:19999641-19999660 None:intergenic 40.0%
CATTTGAAGACAGAGAAGCA+AGG - Chr5:19999556-19999575 MsG0580025526.01.T01:five_prime_UTR 40.0%
CGAGTAGAATTAACTGGAAC+CGG + Chr5:19996595-19996614 None:intergenic 40.0%
CGGTTCCAGTTAATTCTACT+CGG - Chr5:19996593-19996612 MsG0580025526.01.T01:CDS 40.0%
CTAAATTGTCTGTGCTACAG+AGG - Chr5:19997002-19997021 MsG0580025526.01.T01:intron 40.0%
CTCTCTATTATCTTCTCTCG+TGG + Chr5:19996027-19996046 None:intergenic 40.0%
GATTTGTCAGATATTTGGCC+GGG - Chr5:19996544-19996563 MsG0580025526.01.T01:CDS 40.0%
GCATATGTTAGGAATATGCC+TGG - Chr5:19999643-19999662 MsG0580025526.01.T01:five_prime_UTR 40.0%
GCTCCTAGGAAAAAATCTTG+AGG + Chr5:19998700-19998719 None:intergenic 40.0%
TACAACCAGTTCTCATCATC+AGG + Chr5:19996664-19996683 None:intergenic 40.0%
TATCAATTTCCCACTGGAGT+TGG - Chr5:19998325-19998344 MsG0580025526.01.T01:intron 40.0%
TATGGAGAAGCAGCTTATGT+TGG - Chr5:19998223-19998242 MsG0580025526.01.T01:CDS 40.0%
TCCGCAAAACTTGAAAACCA+AGG + Chr5:19998955-19998974 None:intergenic 40.0%
TCCTCAAAATAAAGCTGCCA+GGG - Chr5:19999621-19999640 MsG0580025526.01.T01:five_prime_UTR 40.0%
TCCTCTTACTCACCATCATT+AGG + Chr5:19997352-19997371 None:intergenic 40.0%
TCTGATTCAAATTCACCACG+TGG - Chr5:19996295-19996314 MsG0580025526.01.T01:intron 40.0%
TGAGTTTATGCAGTGTGCAT+TGG - Chr5:19997853-19997872 MsG0580025526.01.T01:intron 40.0%
TGCATTGGAGTCTTTCACAA+TGG - Chr5:19998148-19998167 MsG0580025526.01.T01:intron 40.0%
TTAGGAATATGCCTGGTTCA+AGG - Chr5:19999650-19999669 MsG0580025526.01.T01:five_prime_UTR 40.0%
TTCCATGCTTGAATCTGAGT+AGG - Chr5:19998983-19999002 MsG0580025526.01.T01:intron 40.0%
! ACCATTGAGATGGATTTGTC+AGG - Chr5:19999508-19999527 MsG0580025526.01.T01:CDS 40.0%
! CAGGTAACTAAGGTATCTGA+AGG - Chr5:19998877-19998896 MsG0580025526.01.T01:intron 40.0%
! TCATCATCAGGAGCATAATC+CGG + Chr5:19996652-19996671 None:intergenic 40.0%
! TCCTAATGATGGTGAGTAAG+AGG - Chr5:19997348-19997367 MsG0580025526.01.T01:CDS 40.0%
! TGAGAAAGCATGTGTTACCA+AGG + Chr5:19997261-19997280 None:intergenic 40.0%
!! CTGCAATGAAGAAGTGTCTA+TGG - Chr5:19998205-19998224 MsG0580025526.01.T01:intron 40.0%
!! GCATTTTTGGACTTACTTGG+TGG - Chr5:19999679-19999698 MsG0580025526.01.T01:five_prime_UTR 40.0%
!! GGTGCATTTTTGGACTTACT+TGG - Chr5:19999676-19999695 MsG0580025526.01.T01:five_prime_UTR 40.0%
!! TTCAAGGAGAGGTGCATTTT+TGG - Chr5:19999666-19999685 MsG0580025526.01.T01:five_prime_UTR 40.0%
AAAACCAAGGTGTGCCTTGT+CGG + Chr5:19998942-19998961 None:intergenic 45.0%
AAAAGAAGACCCTCGACTAG+GGG + Chr5:19997316-19997335 None:intergenic 45.0%
AAATCACCATGATCTCGCTG+CGG + Chr5:19996529-19996548 None:intergenic 45.0%
AACCGTAGATCCTGCTCAAT+TGG - Chr5:19996378-19996397 MsG0580025526.01.T01:intron 45.0%
AATATGCCTGGTTCAAGGAG+AGG - Chr5:19999655-19999674 MsG0580025526.01.T01:five_prime_UTR 45.0%
AATCACCTGGAGTCTGAGAA+GGG + Chr5:19999431-19999450 None:intergenic 45.0%
ACAGAGAAGCAAGGAAGTAG+TGG - Chr5:19999565-19999584 MsG0580025526.01.T01:five_prime_UTR 45.0%
ACCCAATTGAGCAGGATCTA+CGG + Chr5:19996383-19996402 None:intergenic 45.0%
ACCGTAGATCCTGCTCAATT+GGG - Chr5:19996379-19996398 MsG0580025526.01.T01:intron 45.0%
AGCTGCCATTCTCCTAATGA+TGG - Chr5:19997337-19997356 MsG0580025526.01.T01:CDS 45.0%
AGTTTCTGAGCCTGAGGATA+TGG - Chr5:19996456-19996475 MsG0580025526.01.T01:CDS 45.0%
ATTGTCCACCGACACATGTT+AGG - Chr5:19997035-19997054 MsG0580025526.01.T01:intron 45.0%
CAAAAGAAGACCCTCGACTA+GGG + Chr5:19997317-19997336 None:intergenic 45.0%
GCATACACAGCAAGATCCAT+CGG + Chr5:19996571-19996590 None:intergenic 45.0%
GCTCATTAGTGTCAGAAGAG+TGG + Chr5:19998079-19998098 None:intergenic 45.0%
GTTGCAAATCCAACTCCAGT+GGG + Chr5:19998337-19998356 None:intergenic 45.0%
GTTTCTGAGCCTGAGGATAT+GGG - Chr5:19996457-19996476 MsG0580025526.01.T01:CDS 45.0%
TCAAAAGAAGACCCTCGACT+AGG + Chr5:19997318-19997337 None:intergenic 45.0%
TCAAATGATCGCGTGAGATC+TGG + Chr5:19999543-19999562 None:intergenic 45.0%
TCCAGACACATGGCAAAAGT+TGG - Chr5:19998551-19998570 MsG0580025526.01.T01:CDS 45.0%
TGTTGTTCTTGTTCACCACG+TGG + Chr5:19996313-19996332 None:intergenic 45.0%
TTGGTTAAGCCCATATCCTC+AGG + Chr5:19996469-19996488 None:intergenic 45.0%
TTTAGACATCACTGATGGCC+AGG - Chr5:19999029-19999048 MsG0580025526.01.T01:intron 45.0%
! ATGCTCCTGATGATGAGAAC+TGG - Chr5:19996656-19996675 MsG0580025526.01.T01:CDS 45.0%
! CTTTTGTTCAACAGGGAGCT+GGG - Chr5:19997227-19997246 MsG0580025526.01.T01:intron 45.0%
! GAAAGTCTTTGGAGGCAGTT+TGG - Chr5:19997925-19997944 MsG0580025526.01.T01:CDS 45.0%
! TCCAACTTTTGCCATGTGTC+TGG + Chr5:19998555-19998574 None:intergenic 45.0%
! TCTTTTGTTCAACAGGGAGC+TGG - Chr5:19997226-19997245 MsG0580025526.01.T01:intron 45.0%
!! GTTTGGTGCCTAACATGTGT+CGG + Chr5:19997046-19997065 None:intergenic 45.0%
AAACCAAGGTGTGCCTTGTC+GGG + Chr5:19998941-19998960 None:intergenic 50.0%
AAATCAGGCCATGCTTCCGT+CGG - Chr5:19999772-19999791 MsG0580025526.01.T01:five_prime_UTR 50.0%
AAGCTGCCAGGGCATATGTT+AGG - Chr5:19999632-19999651 MsG0580025526.01.T01:five_prime_UTR 50.0%
AATGCACCTCTCCTTGAACC+AGG + Chr5:19999664-19999683 None:intergenic 50.0%
AGCAGTGCTCGCAAGAAATC+AGG - Chr5:19999757-19999776 MsG0580025526.01.T01:five_prime_UTR 50.0%
ATCACCTGGAGTCTGAGAAG+GGG + Chr5:19999430-19999449 None:intergenic 50.0%
CAATCACCTGGAGTCTGAGA+AGG + Chr5:19999432-19999451 None:intergenic 50.0%
GGTTGCAAATCCAACTCCAG+TGG + Chr5:19998338-19998357 None:intergenic 50.0%
TATCTCCCCTGTGGTATTCG+TGG - Chr5:19997585-19997604 MsG0580025526.01.T01:CDS 50.0%
TCAGCATATGAACTCCCACC+AGG + Chr5:19999315-19999334 None:intergenic 50.0%
TGGAAGAGTTATCTCCCCTG+TGG - Chr5:19997576-19997595 MsG0580025526.01.T01:CDS 50.0%
TGGAGGCAGTTTGGTTAGCA+AGG - Chr5:19997934-19997953 MsG0580025526.01.T01:CDS 50.0%
! GGATCTTGCTGTGTATGCTC+CGG - Chr5:19996573-19996592 MsG0580025526.01.T01:CDS 50.0%
! TCATCAGGAGCATAATCCGG+TGG + Chr5:19996649-19996668 None:intergenic 50.0%
! TTCTGATTTGATGGCCCAGC+AGG + Chr5:19999210-19999229 None:intergenic 50.0%
!! CGGGTATTGACACGTGTAAG+TGG + Chr5:19996880-19996899 None:intergenic 50.0%
!!! GCCCTGGCAGCTTTATTTTG+AGG + Chr5:19999625-19999644 None:intergenic 50.0%
ACTGGCATTGCAAAGCCTGG+TGG - Chr5:19999297-19999316 MsG0580025526.01.T01:CDS 55.0%
ATCTCGCTGCGGAACATCAC+CGG + Chr5:19996518-19996537 None:intergenic 55.0%
CAGGCTTTGCAATGCCAGTC+GGG + Chr5:19999296-19999315 None:intergenic 55.0%
CATACTGTGCCCCTAGTCGA+GGG - Chr5:19997304-19997323 MsG0580025526.01.T01:CDS 55.0%
CCAGGCTTTGCAATGCCAGT+CGG + Chr5:19999297-19999316 None:intergenic 55.0%
CTGGCATTGCAAAGCCTGGT+GGG - Chr5:19999298-19999317 MsG0580025526.01.T01:CDS 55.0%
GATGTTCCGCAGCGAGATCA+TGG - Chr5:19996520-19996539 MsG0580025526.01.T01:CDS 55.0%
GCCGCAAACAAGTTCCTGCT+GGG - Chr5:19999193-19999212 MsG0580025526.01.T01:CDS 55.0%
GCTATGAAGACTGGGCTCCT+AGG + Chr5:19998714-19998733 None:intergenic 55.0%
GCTGCTGTCTTTGTCCGACT+TGG + Chr5:19999740-19999759 None:intergenic 55.0%
GTGAAACTCCAGCTGCCACA+GGG + Chr5:19999804-19999823 None:intergenic 55.0%
GTGAATTATGCCAGCCCGAC+TGG - Chr5:19999279-19999298 MsG0580025526.01.T01:CDS 55.0%
TCACCTGGAGTCTGAGAAGG+GGG + Chr5:19999429-19999448 None:intergenic 55.0%
TCCGGTGGATACCAAGCTTC+CGG + Chr5:19996634-19996653 None:intergenic 55.0%
TGAAGGGACTGTGCTGTCTC+AGG - Chr5:19998894-19998913 MsG0580025526.01.T01:intron 55.0%
TGCCGCAAACAAGTTCCTGC+TGG - Chr5:19999192-19999211 MsG0580025526.01.T01:CDS 55.0%
TGGTGCCTAACATGTGTCGG+TGG + Chr5:19997043-19997062 None:intergenic 55.0%
TGTCGGAGTTTCTGAGCCTG+AGG - Chr5:19996450-19996469 MsG0580025526.01.T01:CDS 55.0%
TGTGAAACTCCAGCTGCCAC+AGG + Chr5:19999805-19999824 None:intergenic 55.0%
TTCGCACTGCTCCAGACACA+TGG - Chr5:19998541-19998560 MsG0580025526.01.T01:CDS 55.0%
! GCAGGAACTTGTTTGCGGCA+AGG + Chr5:19999192-19999211 None:intergenic 55.0%
! GCCCAGCAGGAACTTGTTTG+CGG + Chr5:19999197-19999216 None:intergenic 55.0%
!! GTCGGGCTGGCATAATTCAC+AGG + Chr5:19999279-19999298 None:intergenic 55.0%
ACAGCAAGATCCATCGGCCC+CGG + Chr5:19996565-19996584 None:intergenic 60.0%
ACCTGGAGTCTGAGAAGGGG+GGG + Chr5:19999427-19999446 None:intergenic 60.0%
AGATATTTGGCCGGGGCCGA+TGG - Chr5:19996552-19996571 MsG0580025526.01.T01:CDS 60.0%
AGTCTGAGAAGGGGGGGAGT+TGG + Chr5:19999421-19999440 None:intergenic 60.0%
ATGCCCGACAAGGCACACCT+TGG - Chr5:19998935-19998954 MsG0580025526.01.T01:intron 60.0%
CACCTGGAGTCTGAGAAGGG+GGG + Chr5:19999428-19999447 None:intergenic 60.0%
CCGACTGGCATTGCAAAGCC+TGG - Chr5:19999294-19999313 MsG0580025526.01.T01:CDS 60.0%
CTTTGCAATGCCAGTCGGGC+TGG + Chr5:19999292-19999311 None:intergenic 60.0%
GCATACTGTGCCCCTAGTCG+AGG - Chr5:19997303-19997322 MsG0580025526.01.T01:CDS 60.0%
GCCGGAAGCTTGGTATCCAC+CGG - Chr5:19996630-19996649 MsG0580025526.01.T01:CDS 60.0%
GGGGGAGTTGGGAGGAGTTA+AGG + Chr5:19999409-19999428 None:intergenic 60.0%
GGTGGATACCAAGCTTCCGG+CGG + Chr5:19996631-19996650 None:intergenic 60.0%
GTCTGAGAAGGGGGGGAGTT+GGG + Chr5:19999420-19999439 None:intergenic 60.0%
!!! TCGGATTTTGGCTGTGCCGC+CGG - Chr5:19996612-19996631 MsG0580025526.01.T01:CDS 60.0%
GGAGCTGGGCTTGCCAACCT+TGG - Chr5:19997241-19997260 MsG0580025526.01.T01:intron 65.0%
GGTAGCTGCCGACGGAAGCA+TGG + Chr5:19999783-19999802 None:intergenic 65.0%
TCCCCCCCTTCTCAGACTCC+AGG - Chr5:19999423-19999442 MsG0580025526.01.T01:CDS 65.0%
TGAGAAGGGGGGGAGTTGGG+AGG + Chr5:19999417-19999436 None:intergenic 65.0%
TGCCACAGGGTAGCTGCCGA+CGG + Chr5:19999791-19999810 None:intergenic 65.0%
TTCCGTCGGCAGCTACCCTG+TGG - Chr5:19999786-19999805 MsG0580025526.01.T01:five_prime_UTR 65.0%
GGCAGCTACCCTGTGGCAGC+TGG - Chr5:19999793-19999812 MsG0580025526.01.T01:five_prime_UTR 70.0%
TGGCTGTGCCGCCGGAAGCT+TGG - Chr5:19996620-19996639 MsG0580025526.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 19996012 19999828 19996012 ID=MsG0580025526.01;Name=MsG0580025526.01
Chr5 mRNA 19996012 19999828 19996012 ID=MsG0580025526.01.T01;Parent=MsG0580025526.01;Name=MsG0580025526.01.T01;_AED=0.26;_eAED=0.26;_QI=280|0.85|0.62|1|1|1|8|0|721
Chr5 exon 19996012 19996310 19996012 ID=MsG0580025526.01.T01:exon:8413;Parent=MsG0580025526.01.T01
Chr5 exon 19996396 19996960 19996396 ID=MsG0580025526.01.T01:exon:8412;Parent=MsG0580025526.01.T01
Chr5 exon 19997256 19997378 19997256 ID=MsG0580025526.01.T01:exon:8411;Parent=MsG0580025526.01.T01
Chr5 exon 19997455 19997784 19997455 ID=MsG0580025526.01.T01:exon:8410;Parent=MsG0580025526.01.T01
Chr5 exon 19997885 19998030 19997885 ID=MsG0580025526.01.T01:exon:8409;Parent=MsG0580025526.01.T01
Chr5 exon 19998221 19998342 19998221 ID=MsG0580025526.01.T01:exon:8408;Parent=MsG0580025526.01.T01
Chr5 exon 19998478 19998599 19998478 ID=MsG0580025526.01.T01:exon:8407;Parent=MsG0580025526.01.T01
Chr5 exon 19999090 19999828 19999090 ID=MsG0580025526.01.T01:exon:8406;Parent=MsG0580025526.01.T01
Chr5 five_prime_UTR 19999549 19999828 19999549 ID=MsG0580025526.01.T01:five_prime_utr;Parent=MsG0580025526.01.T01
Chr5 CDS 19999090 19999548 19999090 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19998478 19998599 19998478 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19998221 19998342 19998221 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19997885 19998030 19997885 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19997455 19997784 19997455 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19997256 19997378 19997256 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19996396 19996960 19996396 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Chr5 CDS 19996012 19996310 19996012 ID=MsG0580025526.01.T01:cds;Parent=MsG0580025526.01.T01
Gene Sequence

>MsG0580025526.01.T01

ATGTCTGATTCAAATTCACCACGTGGTGAACAAGAACAACAAGAGAATCAATTGAATTCATCTTCAACGATGAGTTCAATTTCTGAAACCGTAGATCCTGCTCAATTGGGTATTTCTTTGGCTGATCTTGATGATGACATTGACGTTTATGTTGATGTTGTCGGAGTTTCTGAGCCTGAGGATATGGGCTTAACCAACGATGAGTTTATGTCTGTGATGTACACCGGTGATGTTCCGCAGCGAGATCATGGTGATTTGTCAGATATTTGGCCGGGGCCGATGGATCTTGCTGTGTATGCTCCGGTTCCAGTTAATTCTACTCGGATTTTGGCTGTGCCGCCGGAAGCTTGGTATCCACCGGATTATGCTCCTGATGATGAGAACTGGTTGTATGATTTTAAGGAATCCTTAAAGGATGAAGTTTATGATTCTGATTCTAAAGTTGGGCCATTGACGATTGGAGCTGGGCTTGCCAACCTTGGTAACACATGCTTTCTCAATTCAATTCTGCAATGCTTCACGCATACTGTGCCCCTAGTCGAGGGTCTTCTTTTGAGCTGCCATTCTCCTAATGATGGTGAATTGGGAATTTCAGGTCATAATGGGTTCTGTGTTATCTGTGCTTTCCGCTATCAGATGAAACAGTCCTTGCAGTTTACTGGAAGAGTTATCTCCCCTGTGGTATTCGTGGATAATTTGAAGCAATTTTCTAATGATTTTAGAAGACATATGCAAGAGGATGCACATGAGTTTATGCAGTGTGCATTGGATAAACTTGAGACATGTTTTTCAAATTTTGAGGAGGATAATATTGTGAAGAAAGTCTTTGGAGGCAGTTTGGTTAGCAAGCTTCAGTGTTGTAACTGTAGCCACTCTTCTGACACTAATGAGCCATTGATTGACCTAAGTCTAGAAATAGAAAATGTAGATACTATTTCAAGTGCATTGGAGTCTTTCACAATGGTAGAAAAGATTGATGCTAAGATTAAATGTGAGGGCTGCAATGAAGAAGTGTCTATGGAGAAGCAGCTTATGTTGGATCAGACACCTTCAATTGCTGCATTCCATTTAAAGAGGTTTAAGACAGTTGAGAAGTCAGTTGAAAAGATTGACAAGCATATCAATTTCCCACTGGAGTTGGATTTGCAACCTTACACTATTTTGAATGAAAACAATGATGCATCATTGAAATATGATCTATATGCAGTTGTTGTGCATAATGGAACTTCATCTGACTCTGGGCATTATTTCTGCTTTGTTCGCACTGCTCCAGACACATGGCAAAAGTTGGATGATTCAATGGTAACTAAGGTATCTGAAGGGACTGTGCTGTCTCAGGAAGCATACATATTGTTTTATGCCCGACAAGGCACACCTTGGTTTTCAAGTTTTGCGGAATCTACAATTCCATGCTTGAATCTGAGTAGGATGAACACGTCTCCCAAGTCTGTTTTAGACATCACTGATGGCCAGGATAAATCATTTTCTATTTTAAATGAAAATATTGAAAAGAGTGGGGCTGGTAAATCCAAAGAATTTTCTGAGAAGTCTGATTATTCTTGTCAACAAAGTCGCAAGTTTCCTGAAAATGATGATGTTATTGATGCTTCTCCTTGCCGCAAACAAGTTCCTGCTGGGCCATCAAATCAGAAAAATCTTCATTTGAATGGATCGGAAGATATCAGCGCCCAAGTGCTACCTGTGAATTATGCCAGCCCGACTGGCATTGCAAAGCCTGGTGGGAGTTCATATGCTGAGAATGTTGCTCCTGATAAAAACAAATGCAGTCTGGAAGCTAATGATTTTATAGAGAATGATGTTTTCAATGCCTTAACTCCTCCCAACTCCCCCCCTTCTCAGACTCCAGGTAAGAGTTTCCAGATCTCACGCGATCATTTGAAGACAGAGAAGCAAGGAAGTAGTGGTAAAAGATCATCATCAGGCAAGTCTTCGGATAATCCTCAAAATAAAGCTGCCAGGGCATATGTTAGGAATATGCCTGGTTCAAGGAGAGGTGCATTTTTGGACTTACTTGGTGGTTCCCCAGAAAACAAGAGAAAAAAGACTGATTCATCCAAGTCGGACAAAGACAGCAGCAGTGCTCGCAAGAAATCAGGCCATGCTTCCGTCGGCAGCTACCCTGTGGCAGCTGGAGTTTCACATTGA

Protein sequence

>MsG0580025526.01.T01

MSDSNSPRGEQEQQENQLNSSSTMSSISETVDPAQLGISLADLDDDIDVYVDVVGVSEPEDMGLTNDEFMSVMYTGDVPQRDHGDLSDIWPGPMDLAVYAPVPVNSTRILAVPPEAWYPPDYAPDDENWLYDFKESLKDEVYDSDSKVGPLTIGAGLANLGNTCFLNSILQCFTHTVPLVEGLLLSCHSPNDGELGISGHNGFCVICAFRYQMKQSLQFTGRVISPVVFVDNLKQFSNDFRRHMQEDAHEFMQCALDKLETCFSNFEEDNIVKKVFGGSLVSKLQCCNCSHSSDTNEPLIDLSLEIENVDTISSALESFTMVEKIDAKIKCEGCNEEVSMEKQLMLDQTPSIAAFHLKRFKTVEKSVEKIDKHINFPLELDLQPYTILNENNDASLKYDLYAVVVHNGTSSDSGHYFCFVRTAPDTWQKLDDSMVTKVSEGTVLSQEAYILFYARQGTPWFSSFAESTIPCLNLSRMNTSPKSVLDITDGQDKSFSILNENIEKSGAGKSKEFSEKSDYSCQQSRKFPENDDVIDASPCRKQVPAGPSNQKNLHLNGSEDISAQVLPVNYASPTGIAKPGGSSYAENVAPDKNKCSLEANDFIENDVFNALTPPNSPPSQTPGKSFQISRDHLKTEKQGSSGKRSSSGKSSDNPQNKAARAYVRNMPGSRRGAFLDLLGGSPENKRKKTDSSKSDKDSSSARKKSGHASVGSYPVAAGVSH*