AlfalfaGEDB | MsG0780040364.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040364.01

KEGG: -
GO: GO:0003779 GO:0005634
PFAM: PF00134 PF02984 PF16709 PF16711 PF16712

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040364.01.T01	XP_003624923.1	96.531	490	8	1	87	567	1	490	0	967

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040364.01.T01	F4IIZ9	62.475	493	170	5	87	565	1	492	0	616

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040364.01.T01	A0A835K6W5	63.922	1020	275	13	87	1089	1	944	0.0	1206

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048258.01	MsG0780040364.01	0.845681	3.490355e-59	5.862655e-56
MsG0080048311.01	MsG0780040364.01	0.835253	1.868303e-56	2.272241e-53
MsG0080048701.01	MsG0780040364.01	0.836547	8.777609e-57	1.109758e-53
MsG0080048775.01	MsG0780040364.01	0.836037	1.183274e-56	1.473203e-53
MsG0080048781.01	MsG0780040364.01	0.898609	4.486233e-77	5.341176e-73
MsG0080048842.01	MsG0780040364.01	-0.829794	4.215983e-55	4.360769e-52
MsG0080049140.01	MsG0780040364.01	0.851486	8.601236e-61	1.743507e-57
MsG0180000076.01	MsG0780040364.01	0.829336	5.449649e-55	5.561692e-52
MsG0180000111.01	MsG0780040364.01	0.831466	1.642576e-55	1.784063e-52
MsG0180000601.01	MsG0780040364.01	0.820306	7.355275e-53	5.798512e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040364.01.T01	MTR_7g089090	96.531	490	8	1	87	567	1	490	0.0	967
MsG0780040364.01.T01	MTR_7g089080	98.206	446	8	0	648	1093	15	460	0.0	902
MsG0780040364.01.T01	MTR_5g088860	57.895	494	197	3	87	570	1	493	0.0	587
MsG0780040364.01.T01	MTR_5g088860	57.545	497	200	3	84	570	20	515	0.0	586
MsG0780040364.01.T01	MTR_3g045180	56.653	496	192	5	87	564	1	491	0.0	553
MsG0780040364.01.T01	MTR_5g088980	54.318	440	157	12	654	1088	17	417	1.12e-140	430
MsG0780040364.01.T01	MTR_8g074000	47.482	278	135	3	815	1089	159	428	2.33e-79	267
MsG0780040364.01.T01	MTR_5g023790	46.403	278	138	3	815	1089	155	424	6.08e-78	263
MsG0780040364.01.T01	MTR_5g023790	48.085	235	111	3	815	1046	155	381	7.71e-68	233
MsG0780040364.01.T01	MTR_6g079040	93.220	118	6	2	182	298	46	162	6.30e-62	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040364.01.T01	AT2G40820	62.298	496	172	5	84	565	23	517	0.0	619
MsG0780040364.01.T01	AT2G40820	62.475	493	170	5	87	565	1	492	0.0	616
MsG0780040364.01.T01	AT2G40820	62.475	493	170	5	87	565	1	492	0.0	616
MsG0780040364.01.T01	AT2G40820	63.579	475	160	4	103	565	31	504	0.0	609
MsG0780040364.01.T01	AT3G56480	61.789	492	173	6	87	565	1	490	0.0	600
MsG0780040364.01.T01	AT2G26770	58.704	494	193	3	87	570	1	493	0.0	593
MsG0780040364.01.T01	AT2G26770	58.704	494	193	3	87	570	1	493	0.0	593
MsG0780040364.01.T01	AT2G26770	58.704	494	193	3	87	570	1	493	0.0	593
MsG0780040364.01.T01	AT2G40820	63.446	383	127	4	195	565	1	382	2.56e-164	490
MsG0780040364.01.T01	AT5G06150	54.486	457	171	9	645	1093	10	437	1.96e-148	451

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Find 284 sgRNAs with CRISPR-Local

Find 1060 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTACCTGCATTGTT+GGG	0.381442	7:+76461488	None:intergenic
AAACCTTGCTTCTAGCAGTG+AGG	0.715110	7:+76455350	None:intergenic
AAACGAACCAGGAACACAAA+AGG	0.537440	7:+76454622	None:intergenic
AAATAGTACCTGCATTGTTG+GGG	0.601497	7:+76461489	None:intergenic
AAATATCCCTATGGCGTGAG+AGG	0.572390	7:-76458383	MsG0780040364.01.T01:CDS
AAATTAGTCTGCCCATATTT+CGG	0.334237	7:-76457121	MsG0780040364.01.T01:CDS
AAATTCCTTCGAGCCTGGTG+GGG	0.547494	7:+76470394	None:intergenic
AACAATGAGCAAGTGGGACA+AGG	0.579888	7:-76462810	MsG0780040364.01.T01:CDS
AACAGTTGATGGATTGTGCT+AGG	0.577876	7:-76454384	MsG0780040364.01.T01:CDS
AACATTCTCCCAACATCAAG+GGG	0.616945	7:+76462062	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTCCATCAACTCAA+TGG	+	Chr7:76463862-76463881	None:intergenic	30.0%
AAAAATTGTAGACAATGACG+TGG	+	Chr7:76458637-76458656	None:intergenic	30.0%
AAAATAGTACCTGCATTGTT+GGG	+	Chr7:76462995-76463014	None:intergenic	30.0%
AAAATTGTAGACAATGACGT+GGG	+	Chr7:76458636-76458655	None:intergenic	30.0%
AAACAATGCAACCTAATTAG+TGG	+	Chr7:76463521-76463540	None:intergenic	30.0%
AAAGACATTACCTTACAAGT+TGG	+	Chr7:76456354-76456373	None:intergenic	30.0%
AAAGCCGTAGATAAATAAAG+TGG	-	Chr7:76457801-76457820	MsG0780040364.01.T01:intron	30.0%
AAATTCATCACCATGCAATT+AGG	+	Chr7:76459335-76459354	None:intergenic	30.0%
AACAAAAAATCCCTCTCATT+TGG	-	Chr7:76455941-76455960	MsG0780040364.01.T01:intron	30.0%
AAGAAATAAAAGACATTGGG+AGG	-	Chr7:76455887-76455906	MsG0780040364.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	76453935	76470567	76453935	ID=MsG0780040364.01;Name=MsG0780040364.01
Chr7	mRNA	76453935	76470567	76453935	ID=MsG0780040364.01.T01;Parent=MsG0780040364.01;Name=MsG0780040364.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|0.72\|0.68\|0.84\|1\|1\|19\|314\|1094
Chr7	exon	76453935	76455001	76453935	ID=MsG0780040364.01.T01:exon:14612;Parent=MsG0780040364.01.T01
Chr7	exon	76455107	76455229	76455107	ID=MsG0780040364.01.T01:exon:14611;Parent=MsG0780040364.01.T01
Chr7	exon	76455354	76455617	76455354	ID=MsG0780040364.01.T01:exon:14610;Parent=MsG0780040364.01.T01
Chr7	exon	76455730	76455932	76455730	ID=MsG0780040364.01.T01:exon:14609;Parent=MsG0780040364.01.T01
Chr7	exon	76457114	76457205	76457114	ID=MsG0780040364.01.T01:exon:14608;Parent=MsG0780040364.01.T01
Chr7	exon	76458347	76458496	76458347	ID=MsG0780040364.01.T01:exon:14607;Parent=MsG0780040364.01.T01
Chr7	exon	76461108	76461136	76461108	ID=MsG0780040364.01.T01:exon:14606;Parent=MsG0780040364.01.T01
Chr7	exon	76461251	76461400	76461251	ID=MsG0780040364.01.T01:exon:14605;Parent=MsG0780040364.01.T01
Chr7	exon	76461498	76461632	76461498	ID=MsG0780040364.01.T01:exon:14604;Parent=MsG0780040364.01.T01
Chr7	exon	76461849	76461907	76461849	ID=MsG0780040364.01.T01:exon:14603;Parent=MsG0780040364.01.T01
Chr7	exon	76462000	76462113	76462000	ID=MsG0780040364.01.T01:exon:14602;Parent=MsG0780040364.01.T01
Chr7	exon	76462654	76462834	76462654	ID=MsG0780040364.01.T01:exon:14601;Parent=MsG0780040364.01.T01
Chr7	exon	76462960	76463016	76462960	ID=MsG0780040364.01.T01:exon:14600;Parent=MsG0780040364.01.T01
Chr7	exon	76463330	76463398	76463330	ID=MsG0780040364.01.T01:exon:14599;Parent=MsG0780040364.01.T01
Chr7	exon	76463619	76463759	76463619	ID=MsG0780040364.01.T01:exon:14598;Parent=MsG0780040364.01.T01
Chr7	exon	76463869	76463961	76463869	ID=MsG0780040364.01.T01:exon:14597;Parent=MsG0780040364.01.T01
Chr7	exon	76464232	76464360	76464232	ID=MsG0780040364.01.T01:exon:14596;Parent=MsG0780040364.01.T01
Chr7	exon	76464606	76464910	76464606	ID=MsG0780040364.01.T01:exon:14595;Parent=MsG0780040364.01.T01
Chr7	exon	76470330	76470567	76470330	ID=MsG0780040364.01.T01:exon:14594;Parent=MsG0780040364.01.T01
Chr7	CDS	76470330	76470567	76470330	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76464606	76464910	76464606	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76464232	76464360	76464232	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76463869	76463961	76463869	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76463619	76463759	76463619	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76463330	76463398	76463330	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76462960	76463016	76462960	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76462654	76462834	76462654	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76462000	76462113	76462000	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76461849	76461907	76461849	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76461498	76461632	76461498	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76461251	76461400	76461251	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76461108	76461136	76461108	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76458347	76458496	76458347	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76457114	76457205	76457114	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76455730	76455932	76455730	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76455354	76455617	76455354	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76455107	76455229	76455107	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	CDS	76454249	76455001	76454249	ID=MsG0780040364.01.T01:cds;Parent=MsG0780040364.01.T01
Chr7	three_prime_UTR	76453935	76454248	76453935	ID=MsG0780040364.01.T01:three_prime_utr;Parent=MsG0780040364.01.T01

Gene Sequence

>MsG0780040364.01.T01

ATGTCTTCGGGTGACAAAGAATTTCAGGGTTTCGACTCTAGGGGTACCCCTAGTTCTAGTTCAGCAGATTCTGGTGTGGGTCCTCTGCAAAGTCCTGGAAATGGTTCATTTGATCGCTTCAATTCTCCATTTCACTCTTCCTCTGTTGCGTCCCCACCAGGCTCGAAGGAATTTGGGGTGGCACGGCCCAACTTTAAAGACCTTTTGGATCATGAACCGAACGAGGAAGAAGTGAACCCAGACAAATCTTTTTTCACAATGACAAAGATTAGTCCTGAAATTGAAACCAAGATGCCAATGGAAGCAGTTCCGCCTGTTTCGGCCGATGTGAGCTTTATTTCTAATAGTTTTCCAAAGTATAAACTAGGGGCTGATCATCAAGTTTTTCAAGAGCCTGCTGAGGATAATCAGGGTCCTTCTTTGAAAGATGTTATCGAACAAGAAGCTTCCAATTTGTCAGAGCAGAACAAGCGTATCTCAGTTCGTGACCTTGCCAGTAAATTTGACAAGAACTTATCAGCAGCTGCTAAGCTGTCTAATGAGGCAAAGCTAAGAGAGGTTCCATCTTTGGAGGGGCATGTTCTTTTGAAGAAGCTAAGAGATGCATTAGAATATTTGAAAGGCCGTTTTACGGGAAGAAATAAAGAGGATGTGGCGAATGCTATCTCTATGGTGGAAGCTTTAGCTGTTAAGTTGACTCAGAATGAAGGAGAACTGATTCAAGAGAAGTTTGAAGTGAAAAAGCTTTTGAATTTTCTCAAACAGGCTTCTGAAGATGCTAAGAAGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAGAGTGCTAGAGCAGTGGTGCTGAGAATTGGAGAGGCACTTGAGGAACAAGAAAAAGTTACCCAAGCTTCTAAACCACAGGATGTGGATGGACTGGTAGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGCAAGGTTATGGCCATGGAATATGAACTCCGTGCTCTAAGGGATCAAATTCAAGAAAAATCGCTAACAATGAGCAAGTGGGACAAGGAGAATAAATCTCATTCATATAAGTTAGATGGTTCTGAAGCTTTGGGTTCATATATGCAAGTCAAGCCTTGCACGAATGAAGTGCCACAGGTTTCAAAATGTTCATTTCAGTGGTATCGCTTGTCATCTGAAGGCAGCTGGAGGGAAGTTATTTCAGGTGCCAACAAATCAATATATGCTCCTGATCCCCTTGATGTTGGGAGAATGTTACAAGTGGACATTGTCTCCGATGGCAAAAAACTTACACTAACAACTAATCCAATTCAAACCGTCCCAGGACTCGGAAGCCATGTGGAGGCACTTCTCCGAAAATCCAACACCGACTTTAATGTAGTTATTTCTCAGATGAATGGAAAAGATCACTCATCACATTCTACTCATTCATTTAATGTGGGGAGAATGAGGATAAAGCTATGTAGGGGTTGGATCACAAAAGCTAGAGAGATTTACTCCCCAACAATGCAGCTATGCGGAGTCAGAAGTGATGTCGGTAACGCAGCGAAGGCACTATTTTGGCAAGCAAGAAAAGGGCTATCGTTTGTGTTAACCTTTGAATCAGAGAAAGATAGAAATGTTGCGATTATGATCGCCAGGAAACATGCTCTTGATTGCAATGTTGTGCTTGCTGGGCCAGATGATCTAGTTGGGCTTGGTGGGGGCTTTTTCAAGTGGGCTTTGAAATTTGGGGCTCAATTGACAGCTCTAGATATAACCCATAGGGTACTACTTGAATATAAATATCCCTATGGCGTGAGAGGAATGAAACTAACCTCTTCTCGAAACCAACCTTGGGGTCTCGTGAATTGGTCTAATGGTCTAGTCTTGAGATCTAGGAGTGTTCTCCTATCTAAATCTCAAATTAGTCTGCCCATATTTCGGATACTAGGTGATGCTGCCTTGGGAGGAGGGAAACAACAGAAGAAGAACGGTGCAGCAGGGGAAGGAAGGAACCGTAGACCACTTCTTGATATTGGAAATGTTGTCACACTAAAAGGTGTCGAAGTTAAGCCAAATCGCCCTGTCACAAGGAGTTTTTGTGCACAACTACTTGCCAATGCACAAGCAGCAGCAGTTGCTGAAAACAATAAGAAACAAGCTTGTGTCAATGTGGCTCCTGGACCTGCTCCTCCTGTTGTTGCTGATGGAGTTGCAGCAGTGGCTAGAAGAGTGGTGGTGGCCCCTAAACCTGTTCAGAAGAGAGTCACTGCAAAACCTAAGCCTGTGGAAGTTATTGAAGTAAGTTCTGAAGAAAAGGACAATGAAGAGAAATCTGTGCACAAGAAAAAGGAAGAAGTTAATTCCAAGAAGATACCTTCACGCACTCTTTCTTCTGTCCTCACTGCTAGAAGCAAGGCTGCATGTGGTTTGACTAACAAACCAAAGGAGATTGTTGACATTGATGCTGGTGATGCTAACAATGAGTTAGCTGCTGTTGAATATCTTGAAGACATATACAAGTTCTACAAGATAGTTGAGAATGAAAGCCGTCCACATGATTACATGGACTCACAACCTGAGATAAATGAGAGGATGAGAGGAATACTCATTGATTGGCTGGTAGATGTTCACTCAAAATTCGAACTTTCACCTGAAACCCTTTATCTCACAATCAACATAGTTGATAGGTTCCTTGCTGTCAACCTTGTGTCAAGAAGGGAACTTCAATTGGTTGGAATCAGTGCCATGCTGATGGCATCAAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTGTGCCTCTCAGATAGAGCTTACAGTCATGAACAGATTCTCGTCATGGAGAAAACCATCCTAGGAAAGCTTGAATGGACTTTGACCGTGCCGACACCTTTTGTGTTCCTGGTTCGTTTCATCAAGGCTGCATCAGTATCTGCAGTTCCTTCTGATCAAGGGGATTTCGAGATGATGGCTCATTTTCTCTCTGAGTTGGGAATGATGCATTATGCTACATTAAGGTATTGTCCATCAATGCTTGCTGCCTCAGCAGTTTATGCAGCAAGGAGCACATTGAGCAAGACTCCTGTTTGGAATGAGACACTCAAGATGCATACCGGTTACTCCGAAGAACAGTTGATGGATTGTGCTAGGTTGTTGGTGAGTTTTCACTCTGGTGCTGAGAATGGAAAGCTGAAGGTTGTGTATAAGAAGTACTCTGATCCTCAGAAAGGTGCTGTTGCTGCGCTTCCACCTGCAAAGAATCTTCTGCTACCTGCTGCTGTGTAG

Protein sequence

>MsG0780040364.01.T01

MSSGDKEFQGFDSRGTPSSSSADSGVGPLQSPGNGSFDRFNSPFHSSSVASPPGSKEFGVARPNFKDLLDHEPNEEEVNPDKSFFTMTKISPEIETKMPMEAVPPVSADVSFISNSFPKYKLGADHQVFQEPAEDNQGPSLKDVIEQEASNLSEQNKRISVRDLASKFDKNLSAAAKLSNEAKLREVPSLEGHVLLKKLRDALEYLKGRFTGRNKEDVANAISMVEALAVKLTQNEGELIQEKFEVKKLLNFLKQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKVTQASKPQDVDGLVEEVQEARRIRLLHQPSKVMAMEYELRALRDQIQEKSLTMSKWDKENKSHSYKLDGSEALGSYMQVKPCTNEVPQVSKCSFQWYRLSSEGSWREVISGANKSIYAPDPLDVGRMLQVDIVSDGKKLTLTTNPIQTVPGLGSHVEALLRKSNTDFNVVISQMNGKDHSSHSTHSFNVGRMRIKLCRGWITKAREIYSPTMQLCGVRSDVGNAAKALFWQARKGLSFVLTFESEKDRNVAIMIARKHALDCNVVLAGPDDLVGLGGGFFKWALKFGAQLTALDITHRVLLEYKYPYGVRGMKLTSSRNQPWGLVNWSNGLVLRSRSVLLSKSQISLPIFRILGDAALGGGKQQKKNGAAGEGRNRRPLLDIGNVVTLKGVEVKPNRPVTRSFCAQLLANAQAAAVAENNKKQACVNVAPGPAPPVVADGVAAVARRVVVAPKPVQKRVTAKPKPVEVIEVSSEEKDNEEKSVHKKKEEVNSKKIPSRTLSSVLTARSKAACGLTNKPKEIVDIDAGDANNELAAVEYLEDIYKFYKIVENESRPHDYMDSQPEINERMRGILIDWLVDVHSKFELSPETLYLTINIVDRFLAVNLVSRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYSHEQILVMEKTILGKLEWTLTVPTPFVFLVRFIKAASVSAVPSDQGDFEMMAHFLSELGMMHYATLRYCPSMLAASAVYAARSTLSKTPVWNETLKMHTGYSEEQLMDCARLLVSFHSGAENGKLKVVYKKYSDPQKGAVAALPPAKNLLLPAAV*