AlfalfaGEDB | MsG0380016856.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016856.01

KEGG: K03165
GO: GO:0003676 GO:0003677 GO:0003916 GO:0003917 GO:0006265 GO:0008270
PFAM: PF01131 PF01751

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016856.01.T01	XP_024633622.1	80.972	720	4	5	1	641	1	666	0	1161

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016856.01.T01	C7J0A2	67.53	656	130	5	2	628	6	607	0	891

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016856.01.T01	A0A396IZ64	80.552	725	8	5	1	646	1	671	0.0	1160

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048289.01	MsG0380016856.01	0.817411	3.344437e-52	2.433875e-49
MsG0180000076.01	MsG0380016856.01	0.807260	5.512644e-50	3.056365e-47
MsG0180001290.01	MsG0380016856.01	0.824512	7.755888e-54	6.884436e-51
MsG0180002397.01	MsG0380016856.01	0.821376	4.173484e-53	3.389395e-50
MsG0180003658.01	MsG0380016856.01	0.805205	1.493986e-49	7.856736e-47
MsG0180003857.01	MsG0380016856.01	0.838213	3.287264e-57	4.372561e-54
MsG0180003905.01	MsG0380016856.01	0.822431	2.377814e-53	1.989932e-50
MsG0180004027.01	MsG0380016856.01	0.806558	7.759334e-50	4.224576e-47
MsG0180004120.01	MsG0380016856.01	0.809450	1.881330e-50	1.104901e-47
MsG0180004126.01	MsG0380016856.01	0.838097	3.519632e-57	4.665133e-54

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PPI

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Gene1	Gene2	Type
MsG0280006340.01	MsG0380016856.01	PPI
MsG0280008420.01	MsG0380016856.01	PPI
MsG0380016856.01	MsG0380012103.01	PPI
MsG0380016856.01	MsG0280007841.01	PPI
MsG0380016856.01	MsG0380016140.01	PPI
MsG0380016856.01	MsG0780038445.01	PPI
MsG0380016856.01	MsG0280009289.01	PPI
MsG0780041139.01	MsG0380016856.01	PPI
MsG0780041358.01	MsG0380016856.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016856.01.T01	MTR_3g096640	80.552	725	8	5	1	646	1	671	0.0	1159
MsG0380016856.01.T01	MTR_3g096640	77.236	123	22	2	688	805	833	954	3.43e-33	138
MsG0380016856.01.T01	MTR_3g084800	32.033	718	360	17	8	670	6	650	1.65e-102	336
MsG0380016856.01.T01	MTR_3g084800	31.411	659	328	15	67	670	1	590	9.83e-89	298
MsG0380016856.01.T01	MTR_5g061930	37.251	451	205	10	201	615	26	434	3.08e-80	265
MsG0380016856.01.T01	MTR_5g061940	32.523	329	153	11	52	342	4	301	2.29e-43	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016856.01.T01	AT5G63920	62.222	720	137	7	2	641	5	669	0.0	876
MsG0380016856.01.T01	AT2G32000	34.255	651	330	13	6	626	5	587	1.02e-103	340
MsG0380016856.01.T01	AT2G32000	33.500	600	297	12	65	626	25	560	1.79e-89	301

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Find 228 sgRNAs with CRISPR-Local

Find 975 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATCTTTCATTAACA+TGG	0.587316	3:+88701684	None:intergenic
AAACGTGGCGGAGAAGCCGT+CGG	0.653200	3:-88702745	MsG0380016856.01.T01:CDS
AAATCCGCTTCACTAAGAAG+AGG	0.673563	3:+88697639	None:intergenic
AACAACAAGGGCATCCTGAG+TGG	0.548017	3:-88699657	MsG0380016856.01.T01:CDS
AACATACTCTCACGCAACCA+AGG	0.603024	3:-88702705	MsG0380016856.01.T01:CDS
AACCGGAGCCTGGAAGAGAT+CGG	0.597445	3:+88702521	None:intergenic
AAGAAGCTAGGCGGTGTCAG+TGG	0.631749	3:-88702346	MsG0380016856.01.T01:CDS
AAGGCGTTGCTAATTTCAGC+TGG	0.470283	3:-88701415	MsG0380016856.01.T01:CDS
AAGTTATCAGTTTCTGTACG+AGG	0.650574	3:+88700447	None:intergenic
AATATATGCACAACGGTTGC+TGG	0.376663	3:-88699632	MsG0380016856.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAACACCAACCTGA+GGG	+	Chr3:88697667-88697686	None:intergenic	30.0%
AAAACGAGAAGAAATTACCT+CGG	+	Chr3:88688810-88688829	None:intergenic	30.0%
AAAAGGCAAGGTATAATCAT+TGG	+	Chr3:88700680-88700699	None:intergenic	30.0%
AAAAGGGGGTAAAAGAATTA+GGG	-	Chr3:88691024-88691043	MsG0380016856.01.T01:intron	30.0%
AAAAGGTAGTAATCTCTAAG+GGG	-	Chr3:88701711-88701730	MsG0380016856.01.T01:CDS	30.0%
AAAATGAAATGGCAGTAAAC+AGG	+	Chr3:88700634-88700653	None:intergenic	30.0%
AAACAGGAATCTGATGTTAT+TGG	-	Chr3:88689447-88689466	MsG0380016856.01.T01:intron	30.0%
AAAGATGTGTTTGAACCTAT+GGG	-	Chr3:88701687-88701706	MsG0380016856.01.T01:CDS	30.0%
AAATGAGAAGGAATGATAAC+AGG	+	Chr3:88694406-88694425	None:intergenic	30.0%
AACAAAACTGGACAATCTAA+TGG	+	Chr3:88701583-88701602	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	88688521	88702793	88688521	ID=MsG0380016856.01;Name=MsG0380016856.01
Chr3	mRNA	88688521	88702793	88688521	ID=MsG0380016856.01.T01;Parent=MsG0380016856.01;Name=MsG0380016856.01.T01;_AED=0.22;_eAED=0.26;_QI=0\|0\|0\|0.94\|1\|1\|19\|0\|806
Chr3	exon	88702503	88702793	88702503	ID=MsG0380016856.01.T01:exon:3170;Parent=MsG0380016856.01.T01
Chr3	exon	88702221	88702390	88702221	ID=MsG0380016856.01.T01:exon:3169;Parent=MsG0380016856.01.T01
Chr3	exon	88701853	88701991	88701853	ID=MsG0380016856.01.T01:exon:3168;Parent=MsG0380016856.01.T01
Chr3	exon	88701627	88701749	88701627	ID=MsG0380016856.01.T01:exon:3167;Parent=MsG0380016856.01.T01
Chr3	exon	88701415	88701534	88701415	ID=MsG0380016856.01.T01:exon:3166;Parent=MsG0380016856.01.T01
Chr3	exon	88701066	88701182	88701066	ID=MsG0380016856.01.T01:exon:3165;Parent=MsG0380016856.01.T01
Chr3	exon	88700425	88700508	88700425	ID=MsG0380016856.01.T01:exon:3164;Parent=MsG0380016856.01.T01
Chr3	exon	88699513	88699692	88699513	ID=MsG0380016856.01.T01:exon:3163;Parent=MsG0380016856.01.T01
Chr3	exon	88699286	88699414	88699286	ID=MsG0380016856.01.T01:exon:3162;Parent=MsG0380016856.01.T01
Chr3	exon	88698513	88698587	88698513	ID=MsG0380016856.01.T01:exon:3161;Parent=MsG0380016856.01.T01
Chr3	exon	88698341	88698419	88698341	ID=MsG0380016856.01.T01:exon:3160;Parent=MsG0380016856.01.T01
Chr3	exon	88697620	88697726	88697620	ID=MsG0380016856.01.T01:exon:3159;Parent=MsG0380016856.01.T01
Chr3	exon	88697389	88697493	88697389	ID=MsG0380016856.01.T01:exon:3158;Parent=MsG0380016856.01.T01
Chr3	exon	88696585	88696619	88696585	ID=MsG0380016856.01.T01:exon:3157;Parent=MsG0380016856.01.T01
Chr3	exon	88695072	88695201	88695072	ID=MsG0380016856.01.T01:exon:3156;Parent=MsG0380016856.01.T01
Chr3	exon	88693644	88693682	88693644	ID=MsG0380016856.01.T01:exon:3155;Parent=MsG0380016856.01.T01
Chr3	exon	88691724	88691792	88691724	ID=MsG0380016856.01.T01:exon:3154;Parent=MsG0380016856.01.T01
Chr3	exon	88689089	88689195	88689089	ID=MsG0380016856.01.T01:exon:3153;Parent=MsG0380016856.01.T01
Chr3	exon	88688521	88688842	88688521	ID=MsG0380016856.01.T01:exon:3152;Parent=MsG0380016856.01.T01
Chr3	CDS	88702503	88702793	88702503	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88702221	88702390	88702221	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88701853	88701991	88701853	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88701627	88701749	88701627	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88701415	88701534	88701415	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88701066	88701182	88701066	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88700425	88700508	88700425	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88699513	88699692	88699513	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88699286	88699414	88699286	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88698513	88698587	88698513	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88698341	88698419	88698341	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88697620	88697726	88697620	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88697389	88697493	88697389	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88696585	88696619	88696585	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88695072	88695201	88695072	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88693644	88693682	88693644	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88691724	88691792	88691724	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88689089	88689195	88689089	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01
Chr3	CDS	88688521	88688842	88688521	ID=MsG0380016856.01.T01:cds;Parent=MsG0380016856.01.T01

Gene Sequence

>MsG0380016856.01.T01

ATGGGTGGACGCGCCATAACCGTCCTAAACGTGGCGGAGAAGCCGTCGGTGGCGAAATCGGTGGCGAACATACTCTCACGCAACCAAGGTCTTCGAGTAAGGGACGGTCGTTCTCGCTACAACAGAATCTTCGAATTCAACTACACCATTCGAGGTCAACCCTGTCAAATGCTCTTCACCTCCGTCCTCGGTCACCTCATGGAGCTTGACTTCGACGATCGTTACCGGAAATGGCACTCGTGCGATCCCGCCGATCTCTTCCAGGCTCCGGTTCATAAATTCGTTCCCGAGGATATTAAGAGGACATTAGAGGAAGAAGCTAGGCGGTGTCAGTGGCTTATTTTGTGGCTTGATTGCGATAGGGAAGGTGAGAATATCGCGTTTGAAGTTATCGATGTGTGTACTGCGGCAAATCCGAATCTTACTATTAAGAGAGCTCGATTTTCTGCATTGATTGACAGGGAAATCCATCAGGCTGTGCAAAATCTTGTCGAGCCTAATAAGTGGTTTGCTGATGCCGTAGATGCTAGGCAGGCGAGTCTCCTTTTTCGGTCTCAGTTGGAGCTCAAATTTATGTTCCAATTGAAACAGGAATCTGATGAAATAGATCTCCGTATAGGTGCTACTTTCACCAGATTTCAGACCATGTTAATGAAAGATGCTTTTGTCATAGACACTGTTACAGATGGCAGAAATACTGTCTTGAGTTATGGGCCTTGCCAGTTCCCTACGCTTGGATTTGTTGTGGAAAGATACTGGGAGATACAAGCTCATGAACCAGAAGAGTTTTGGTTAATCAAATGTTCTCATAGATCAGATGAAGGCGTTGCTAATTTCAGCTGGGTGACAAAAGTAACACCAAGGGAGAAGCCAAAGTATCCTCCCCATCCCCTGAGTACTATTGAGCTTGAGAAACGGGCCTCACGATACTTCCGCATGAGCTCTGAGCGCACAATGAAGGTGGCAGAAGAACTCTACCAAGGTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAACTTTTCTTCAAGGACTGATTTGCATGCAATTGTGCAAGAACAACAAGGGCATCCTGAGTGGGGAATATATGCACAACGGTTGCTGGACCCTGGGGCGGGACTTTGGAGAAACCCTAGAGGTGGTGGACATGATGACCAGGCTCATCCACCCATCCACCCCACCAAATTTTCTGCTGGAGAATCAGGATGGAGTCAAGACCATCGTAAACTGTATGAGTTGGTTGTTCGCCACTTCCTGGCATGTGTCTCAAAGCCGGCCTTAGGAGCTGAAACCACAGTGGAAATTGACATTGCTGGTGAACGATTTTCAGCATGTGGGAGGGTGATTCTAGAGAGAAACTACTTGGATGTCTATATCTATGATAGATGGGATGGATCAATGATTCCGAATTATGCTATCGGTGAACAGTTATTGTTATTCCCATCACAAGCTGTTCAGTATCCTAAATCTCAGATTCCTGATGGAATTCTACACCAAACAAATCCCGAGCTATTGCTATTACAGTTCATTCCAACAACATTGACCCTTGATCCCGGAAAAACCAATCCACCACCTCTTCTTAGTGAAGCGGATTTGCTGAGCCGTATGGACAAGGAGTGCATTGGTACGGATGCTACGATGCACGATCACATCAAGAAGCTGCTTGATCGATTTTATGCAACTAAGGATGCAAACATGTGTTTCACACCAACTAATCTGGGTGAGGCACTTGTTATGGGATATGATGACATGGGGTATAAACTGTGGAAACCAGATCTTAGAGCAGTTATGGAACGAGATATGAAATCAGTCAGTGAAGGGAATAAAAGCAAAGCTGAAGTTTTGGATACTAGCCTGCAGCAGATGAAAACTTGTTTCTTAGATGATGGCAATTTTATGGTTGGATGTCGTAGTTACCCTCAGGTTGCATTGGTGGCTGCGATGAGATTCTACACAGTTGACAGAAATATGTGGTACCGGGCTCCCGCGCAGGGGATTCTTCTGTTGCATGCAGCTCGTGTGAAACACCGTGTGTTTTGCGAATTGCAAATACAGATAATAAACAAAAACAGGAAGTTCTACGCATGTCTAACAAAGGGATTAGAGGAACAAAATTTATTGCATGGTTTTGAGACAGCTATTTGCTTATGTAAATCTTATTACCTCTATTACAGAATATGGGAGGATGAACTCAACAATGGCAGTGGAGGAAGAAGAAGTTCTGCACGTTCAAATAGTACTCCAGCATCCAACCGTGGTCGAAATGGTGGCCGTGGATCTCTGTGTAGGGGTCGCAATGGATCTAATTCTTCTAACGGGGACATTCGGTCAGCCACTGGTGATCCTATTTCTGACAGAAGGTGCTATACATGTGGTGATCCATCTCACTTTGCTAATGTTTGCCCCAATCGTGGACACTGA

Protein sequence

>MsG0380016856.01.T01

MGGRAITVLNVAEKPSVAKSVANILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCQMLFTSVLGHLMELDFDDRYRKWHSCDPADLFQAPVHKFVPEDIKRTLEEEARRCQWLILWLDCDREGENIAFEVIDVCTAANPNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQASLLFRSQLELKFMFQLKQESDEIDLRIGATFTRFQTMLMKDAFVIDTVTDGRNTVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWLIKCSHRSDEGVANFSWVTKVTPREKPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQQGHPEWGIYAQRLLDPGAGLWRNPRGGGHDDQAHPPIHPTKFSAGESGWSQDHRKLYELVVRHFLACVSKPALGAETTVEIDIAGERFSACGRVILERNYLDVYIYDRWDGSMIPNYAIGEQLLLFPSQAVQYPKSQIPDGILHQTNPELLLLQFIPTTLTLDPGKTNPPPLLSEADLLSRMDKECIGTDATMHDHIKKLLDRFYATKDANMCFTPTNLGEALVMGYDDMGYKLWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCFLDDGNFMVGCRSYPQVALVAAMRFYTVDRNMWYRAPAQGILLLHAARVKHRVFCELQIQIINKNRKFYACLTKGLEEQNLLHGFETAICLCKSYYLYYRIWEDELNNGSGGRRSSARSNSTPASNRGRNGGRGSLCRGRNGSNSSNGDIRSATGDPISDRRCYTCGDPSHFANVCPNRGH*