AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004475.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004475.01.T01 MTR_1g080700 94.681 188 5 2 1 187 1 184 2.47e-103 301
MsG0180004475.01.T01 MTR_1g070440 64.865 111 37 2 26 134 9 119 7.18e-25 100
MsG0180004475.01.T01 MTR_1g070390 69.880 83 25 0 14 96 50 132 1.42e-24 100
MsG0180004475.01.T01 MTR_1g070435 69.880 83 25 0 14 96 50 132 2.62e-24 99.8
MsG0180004475.01.T01 MTR_7g096280 61.644 73 28 0 21 93 56 128 1.46e-23 99.0
MsG0180004475.01.T01 MTR_5g021730 45.361 97 39 3 1 96 22 105 2.75e-16 75.5
MsG0180004475.01.T01 MTR_8g077160 69.048 42 13 0 14 55 49 90 2.43e-12 62.8
MsG0180004475.01.T01 MTR_3g065570 42.857 70 40 0 22 91 8 77 3.55e-11 61.6
MsG0180004475.01.T01 MTR_6g079520 44.444 72 37 1 25 93 40 111 7.31e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004475.01.T01 AT2G30620 67.708 96 30 1 26 121 61 155 1.90e-30 114
MsG0180004475.01.T01 AT2G30620 68.085 94 29 1 26 119 61 153 1.43e-29 114
MsG0180004475.01.T01 AT1G06760 77.941 68 15 0 26 93 61 128 1.14e-21 93.2
MsG0180004475.01.T01 AT2G18050 44.094 127 62 3 16 133 8 134 9.25e-20 85.1
MsG0180004475.01.T01 AT2G18050 39.024 123 70 3 33 150 1 123 1.38e-15 73.2

Find 102 sgRNAs with CRISPR-Local

Find 529 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGCTTCGCCGCTGCTTT+TGG 0.203938 1:+78630262 None:intergenic
TTTGGCTTTGCGGCAGCTTT+CGG 0.250457 1:+78630280 None:intergenic
ATGTTAAGAACGTTATTAAA+AGG 0.282564 1:-78629155 MsG0180004475.01.T01:CDS
CTTGGGCTTGAGCTTGGGCT+TGG 0.284494 1:+78630753 None:intergenic
CCCTTAACACTCTTCGCTTT+CGG 0.311339 1:+78630226 None:intergenic
TCCGGTTAACTCGAATAAAA+AGG 0.324040 1:-78623143 MsG0180004475.01.T01:CDS
CTGAAGAAATCTGTGGCTTC+TGG 0.328322 1:-78630460 MsG0180004475.01.T01:CDS
CACCTCTATAAGTGCCCTTT+GGG 0.338179 1:+78628300 None:intergenic
CTTGGTCTGAGCAGCGGCGG+TGG 0.350352 1:+78630771 None:intergenic
CATCAAAAGCTCTTTGAACT+TGG 0.355339 1:-78622137 MsG0180004475.01.T01:CDS
ATGTTTCGAATCTGCTCCTT+TGG 0.355798 1:-78627612 MsG0180004475.01.T01:CDS
TTCACAGCAGCTTTCGCCTT+CGG 0.369735 1:+78630304 None:intergenic
TTCGGCTTCACAACAGCTTT+AGG 0.372527 1:+78630244 None:intergenic
CTCCGGTCACCACCAGGGTC+AGG 0.379723 1:-78628336 MsG0180004475.01.T01:CDS
TTAGTTGCAGCCTTAGCGGC+TGG 0.381676 1:+78630328 None:intergenic
ACCGGAGTCTTAACACTCTT+CGG 0.394389 1:+78630160 None:intergenic
CCAGGGTCAGGGCACGCCTC+CGG 0.397700 1:-78628324 MsG0180004475.01.T01:CDS
CAGGGTCAGGGCACGCCTCC+GGG 0.402834 1:-78628323 MsG0180004475.01.T01:CDS
GCACCTCTATAAGTGCCCTT+TGG 0.406919 1:+78628299 None:intergenic
CGTTTCTTCAACTTCTTCTA+CGG 0.415284 1:-78627560 MsG0180004475.01.T01:intron
TTCTTCGCCGCTTTCTTCAC+AGG 0.416978 1:+78630199 None:intergenic
GTTCGGCTCCGGTCACCACC+AGG 0.422346 1:-78628342 MsG0180004475.01.T01:CDS
AGGAGCAGATTCGAAACATC+TGG 0.437950 1:+78627616 None:intergenic
GGCACGCCTCCGGGCCCAAA+GGG 0.441964 1:-78628314 MsG0180004475.01.T01:CDS
GGAGCAGTAGCGGCCTTCAC+CGG 0.448419 1:+78630379 None:intergenic
ATTCGAAACATCTGGATCTC+TGG 0.449605 1:+78627624 None:intergenic
GATGAAGAAGAATGAGTTTG+CGG 0.452593 1:+78630482 None:intergenic
GGTTAAATATGTTAGACATC+CGG 0.455165 1:-78623161 MsG0180004475.01.T01:intron
GTGAGTTTGAAAGAAAGAAC+TGG 0.455638 1:-78630568 MsG0180004475.01.T01:CDS
CACTTCTTAGCTTTCTTCAC+CGG 0.455761 1:+78630142 None:intergenic
CCGAAAGCGAAGAGTGTTAA+GGG 0.457605 1:-78630226 MsG0180004475.01.T01:CDS
GCCGAAAGCGAAGAGTGTTA+AGG 0.460757 1:-78630227 MsG0180004475.01.T01:CDS
GCCCTGACCCTGGTGGTGAC+CGG 0.465988 1:+78628334 None:intergenic
CGCTACTGCTCCTGCTAAGA+AGG 0.467466 1:-78630368 MsG0180004475.01.T01:CDS
CATGGTTGAGACTTGAGATT+CGG 0.468277 1:+78630798 None:intergenic
CGATGTGAGGGCAGTGTTGG+TGG 0.473055 1:+78628265 None:intergenic
AGTTTAGGTGGGTTCGGCTC+CGG 0.474526 1:-78628353 MsG0180004475.01.T01:intron
CGGCTTAGTTGCAGCCTTAG+CGG 0.476251 1:+78630324 None:intergenic
ACAGCCTTAGCCTTCTTAGC+AGG 0.476334 1:+78630358 None:intergenic
GGCCCAAAGGGCACTTATAG+AGG 0.477535 1:-78628302 MsG0180004475.01.T01:CDS
AACTCTTTCTCTCTCTAAAA+CGG 0.479913 1:-78630841 MsG0180004475.01.T01:five_prime_UTR
CTGCTCCTTTGGCTCAGACA+TGG 0.487284 1:-78627601 MsG0180004475.01.T01:CDS
CTATAAGTGCCCTTTGGGCC+CGG 0.487713 1:+78628305 None:intergenic
TTGGTCTGAGCAGCGGCGGT+GGG 0.488362 1:+78630772 None:intergenic
TGGCTCAGTTGGTAAGGAAC+GGG 0.493822 1:+78628202 None:intergenic
ATCAAAAGCTCTTTGAACTT+GGG 0.501854 1:-78622136 MsG0180004475.01.T01:CDS
CCGGAGGCGTGCCCTGACCC+TGG 0.506051 1:+78628324 None:intergenic
GGCGAAAACTGCTCCGGTGA+AGG 0.508511 1:-78630392 MsG0180004475.01.T01:CDS
TGTGAAGAAAGCGGCGAAGA+AGG 0.511913 1:-78630197 MsG0180004475.01.T01:CDS
CCAACACACGTTGGCTCAGT+TGG 0.512037 1:+78628191 None:intergenic
TCCTTGATCCTTCCAAGGTG+AGG 0.517229 1:+78627649 None:intergenic
TGCCGATGTGAGGGCAGTGT+TGG 0.518482 1:+78628262 None:intergenic
AGCAGCGGCGGTGGGAGACA+TGG 0.520541 1:+78630780 None:intergenic
TGAATTTCGTTATCGCGTGT+TGG 0.523300 1:+78630539 None:intergenic
TGGTCTCCTTGATCCTTCCA+AGG 0.524285 1:+78627644 None:intergenic
TGTTACGAAGCCAGCCGCTA+AGG 0.527612 1:-78630338 MsG0180004475.01.T01:CDS
ACACGTTGGCTCAGTTGGTA+AGG 0.528013 1:+78628196 None:intergenic
CCCTCACCTTGGAAGGATCA+AGG 0.530332 1:-78627650 MsG0180004475.01.T01:CDS
CTTCAAAATCGCTCCGGCAG+CGG 0.533005 1:-78630413 MsG0180004475.01.T01:CDS
TCAGTTACCCTCACCTTGGA+AGG 0.533510 1:-78627657 MsG0180004475.01.T01:intron
ATTCATCGAAGAGAAGCATA+AGG 0.536890 1:-78630521 MsG0180004475.01.T01:CDS
CGATTCCCTCTGCCGATGTG+AGG 0.537201 1:+78628252 None:intergenic
CACAACCTTCTGCAAGGAAG+TGG 0.540093 1:-78628225 MsG0180004475.01.T01:CDS
GGGCACGCCTCCGGGCCCAA+AGG 0.542751 1:-78628315 MsG0180004475.01.T01:CDS
TGCCGCAAAGCCAAAAGCAG+CGG 0.551299 1:-78630272 MsG0180004475.01.T01:CDS
TGCTCCTGCTAAGAAGGCTA+AGG 0.552889 1:-78630362 MsG0180004475.01.T01:CDS
AAACTCCTTCAAAATCGCTC+CGG 0.553204 1:-78630419 MsG0180004475.01.T01:CDS
GAGAGGCTTCTTTGCTGCAG+CGG 0.555043 1:+78630726 None:intergenic
CACTGCCCTCACATCGGCAG+AGG 0.555433 1:-78628258 MsG0180004475.01.T01:CDS
TCCGGTCACCACCAGGGTCA+GGG 0.555439 1:-78628335 MsG0180004475.01.T01:CDS
GGGCTTGGTCTGAGCAGCGG+CGG 0.555862 1:+78630768 None:intergenic
GGCAGCGGCGAAAACTGCTC+CGG 0.555880 1:-78630398 MsG0180004475.01.T01:CDS
AGAATGAGTTTGCGGAACGT+TGG 0.556957 1:+78630490 None:intergenic
GATTCCCTCTGCCGATGTGA+GGG 0.562765 1:+78628253 None:intergenic
AGCAACCATGTCTGAGCCAA+AGG 0.563861 1:+78627596 None:intergenic
TTGGCTCAGTTGGTAAGGAA+CGG 0.573450 1:+78628201 None:intergenic
GATGTGAGGGCAGTGTTGGT+GGG 0.573944 1:+78628266 None:intergenic
ACGGGCCACTTCCTTGCAGA+AGG 0.577468 1:+78628220 None:intergenic
GTTATTACCTCAGCGTAGGT+AGG 0.578831 1:+78630697 None:intergenic
TCTTCATCTGAAGAAATCTG+TGG 0.580993 1:-78630467 MsG0180004475.01.T01:CDS
TTCGGCTCCGGTCACCACCA+GGG 0.582981 1:-78628341 MsG0180004475.01.T01:CDS
GGCTTCTGGCAAGCTCGTGA+AGG 0.588674 1:-78630446 MsG0180004475.01.T01:CDS
CCAACTGAGCCAACGTGTGT+TGG 0.590092 1:-78628191 MsG0180004475.01.T01:intron
GCCGAAGAGTGTTAAGACTC+CGG 0.591306 1:-78630161 MsG0180004475.01.T01:CDS
ATTTGTTATTACCTCAGCGT+AGG 0.593667 1:+78630693 None:intergenic
TAAGGCTGCAACTAAGCCGA+AGG 0.594172 1:-78630320 MsG0180004475.01.T01:CDS
CCTTGATCCTTCCAAGGTGA+GGG 0.596178 1:+78627650 None:intergenic
CTTGGGCTTGGTCTGAGCAG+CGG 0.604922 1:+78630765 None:intergenic
TTTCTTTGCTGATTATACTG+AGG 0.608431 1:-78622162 MsG0180004475.01.T01:CDS
TCTCTCAGTTACCCTCACCT+TGG 0.615718 1:-78627661 MsG0180004475.01.T01:intron
CACCAACACTGCCCTCACAT+CGG 0.617012 1:-78628264 MsG0180004475.01.T01:CDS
CTTCTTAGCAGGAGCAGTAG+CGG 0.626747 1:+78630369 None:intergenic
GAAGAAAGCGGCGAAGAAGG+TGG 0.636706 1:-78630194 MsG0180004475.01.T01:CDS
ACTGCCCTCACATCGGCAGA+GGG 0.650170 1:-78628257 MsG0180004475.01.T01:CDS
CGAACACACAACCTTCTGCA+AGG 0.650189 1:-78628231 MsG0180004475.01.T01:CDS
GCGTAGGTAGGATGAGAGAG+AGG 0.655352 1:+78630709 None:intergenic
CTCTCATCCTACCTACGCTG+AGG 0.671811 1:-78630704 MsG0180004475.01.T01:intron
TAAGTGCCCTTTGGGCCCGG+AGG 0.681897 1:+78628308 None:intergenic
GGGTACGCCTGTGAAGAAAG+CGG 0.711847 1:-78630206 MsG0180004475.01.T01:CDS
GAGGCGTGCCCTGACCCTGG+TGG 0.718920 1:+78628327 None:intergenic
ACCGGTGTACCAACACACGT+TGG 0.720277 1:+78628182 None:intergenic
AAGAAGTTGAAGAAACGACA+CGG 0.725477 1:+78627566 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATTATAATATTATT+AGG - Chr1:78622977-78622996 MsG0180004475.01.T01:intron 0.0%
!!! TTTTAATATTATAAATTTTT+GGG - Chr1:78623657-78623676 MsG0180004475.01.T01:intron 0.0%
!! AAGAAAAATGTATAAATAAA+GGG + Chr1:78629750-78629769 None:intergenic 10.0%
!! ATAATTATAATATTATTAGG+AGG - Chr1:78622980-78622999 MsG0180004475.01.T01:intron 10.0%
!! TAAAAAAATTTAAGAGTTTA+AGG - Chr1:78624053-78624072 MsG0180004475.01.T01:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + Chr1:78629751-78629770 None:intergenic 10.0%
!!! AAAATTTTACAGAAAAATTT+AGG + Chr1:78624217-78624236 None:intergenic 10.0%
!!! AAATTTTACAGAAAAATTTA+GGG + Chr1:78624216-78624235 None:intergenic 10.0%
!!! AATTTTTTAAAATGAATTCA+TGG - Chr1:78624874-78624893 MsG0180004475.01.T01:intron 10.0%
!!! GTGAATTTTTTTAATTTTTA+CGG + Chr1:78623587-78623606 None:intergenic 10.0%
!!! TAAAAGTTAAATTTTTTTAG+AGG - Chr1:78624316-78624335 MsG0180004475.01.T01:intron 10.0%
!!! TATAAGTAAATTTTTTTGTA+GGG - Chr1:78624113-78624132 MsG0180004475.01.T01:intron 10.0%
!!! TATAGATAATATTTCTAATT+AGG - Chr1:78628020-78628039 MsG0180004475.01.T01:intron 10.0%
!!! TATCTATAATTTGTATATTT+TGG + Chr1:78626720-78626739 None:intergenic 10.0%
!!! TATTTTTTTTAGAAATGTTA+AGG + Chr1:78630493-78630512 None:intergenic 10.0%
!!! TGATATTTTTTTTTATCATT+AGG - Chr1:78629486-78629505 MsG0180004475.01.T01:intron 10.0%
!!! TTATAAGTAAATTTTTTTGT+AGG - Chr1:78624112-78624131 MsG0180004475.01.T01:intron 10.0%
!!! TTATTTTTCATTATAGATTT+GGG - Chr1:78625977-78625996 MsG0180004475.01.T01:intron 10.0%
!!! TTTCTAATCTTTTTTTTTAA+TGG + Chr1:78624968-78624987 None:intergenic 10.0%
!! AAAACATGATATTATTTGAT+TGG + Chr1:78629985-78630004 None:intergenic 15.0%
!! AAAGCTATTAATATTAAGTA+AGG - Chr1:78624142-78624161 MsG0180004475.01.T01:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + Chr1:78623803-78623822 None:intergenic 15.0%
!! AATAATTGGAGAAAAATTAT+AGG + Chr1:78624440-78624459 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + Chr1:78623731-78623750 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + Chr1:78629749-78629768 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + Chr1:78623922-78623941 None:intergenic 15.0%
!! ATAATTGGAGAAAAATTATA+GGG + Chr1:78624439-78624458 None:intergenic 15.0%
!! ATTCAATAAAATTGAACAAA+AGG + Chr1:78628695-78628714 None:intergenic 15.0%
!! CAAAAAAAATATATAAACAC+CGG + Chr1:78624630-78624649 None:intergenic 15.0%
!! GAACTTAAATAAAAATTAAC+AGG + Chr1:78623345-78623364 None:intergenic 15.0%
!! TAGCAATTTCATATATTAAA+AGG + Chr1:78626274-78626293 None:intergenic 15.0%
!! TGTAACTTCTATAATTAAAA+TGG + Chr1:78627777-78627796 None:intergenic 15.0%
!!! AAAAAATTAGGGTTTAATTT+GGG - Chr1:78622893-78622912 MsG0180004475.01.T01:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - Chr1:78624082-78624101 MsG0180004475.01.T01:intron 15.0%
!!! AGATTAGAAATTGTTTTATT+TGG - Chr1:78624978-78624997 MsG0180004475.01.T01:intron 15.0%
!!! AGTTCAAAATTTATTTTGAA+AGG + Chr1:78628871-78628890 None:intergenic 15.0%
!!! ATTTAATTTGAATTGAGTTT+AGG - Chr1:78625810-78625829 MsG0180004475.01.T01:intron 15.0%
!!! ATTTCTAAAAAAAATACCTA+TGG - Chr1:78630497-78630516 MsG0180004475.01.T01:CDS 15.0%
!!! ATTTGTTTTCTTTTTAAATG+TGG - Chr1:78626817-78626836 MsG0180004475.01.T01:intron 15.0%
!!! ATTTTAATTATAGAAGTTAC+AGG - Chr1:78627776-78627795 MsG0180004475.01.T01:intron 15.0%
!!! ATTTTAGTTCAAAAATATGT+AGG - Chr1:78629546-78629565 MsG0180004475.01.T01:intron 15.0%
!!! CTTATTTTGTCTAAAAAATA+TGG - Chr1:78629404-78629423 MsG0180004475.01.T01:intron 15.0%
!!! CTTATTTTTCATTATAGATT+TGG - Chr1:78625976-78625995 MsG0180004475.01.T01:intron 15.0%
!!! GTATTTTATATTGCTTTATA+TGG + Chr1:78627582-78627601 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - Chr1:78624081-78624100 MsG0180004475.01.T01:intron 15.0%
!!! TATAATTTTTCTCCAATTAT+TGG - Chr1:78624439-78624458 MsG0180004475.01.T01:intron 15.0%
!!! TGTTTAAAAAAATTTTTTGG+CGG + Chr1:78630422-78630441 None:intergenic 15.0%
!!! TTCACATTTAATTAATGTTT+TGG - Chr1:78623602-78623621 MsG0180004475.01.T01:intron 15.0%
!!! TTTAATTTGAATTGAGTTTA+GGG - Chr1:78625811-78625830 MsG0180004475.01.T01:intron 15.0%
!!! TTTTAGTTCAAAAATATGTA+GGG - Chr1:78629547-78629566 MsG0180004475.01.T01:intron 15.0%
!!! TTTTGATAGAAAACAATAAA+TGG - Chr1:78625480-78625499 MsG0180004475.01.T01:intron 15.0%
!! AAAACCATTTAAATGAATTG+AGG + Chr1:78626333-78626352 None:intergenic 20.0%
!! AAAATAAACAGTAGATTGAT+TGG + Chr1:78627868-78627887 None:intergenic 20.0%
!! AAAATTGATCTTTCAAACAA+TGG + Chr1:78627634-78627653 None:intergenic 20.0%
!! AAACAGAAAACTAATTCATT+AGG + Chr1:78623073-78623092 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + Chr1:78629726-78629745 None:intergenic 20.0%
!! AATCACACACATAAATAAAA+TGG + Chr1:78626210-78626229 None:intergenic 20.0%
!! ACAATATTATAAAAGAGATG+TGG + Chr1:78623504-78623523 None:intergenic 20.0%
!! ACATGATTTCATCAATTAAA+AGG + Chr1:78628094-78628113 None:intergenic 20.0%
!! ACCTTGAATTAAATTCAAAT+TGG + Chr1:78625695-78625714 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + Chr1:78629694-78629713 None:intergenic 20.0%
!! ATACATAATATTAACCATCA+AGG - Chr1:78623409-78623428 MsG0180004475.01.T01:intron 20.0%
!! ATGTTAAGAACGTTATTAAA+AGG - Chr1:78623857-78623876 MsG0180004475.01.T01:intron 20.0%
!! ATTACTTCTATCAAATTATC+TGG - Chr1:78629261-78629280 MsG0180004475.01.T01:intron 20.0%
!! CTTATATGTTATATTCAAGT+TGG + Chr1:78626939-78626958 None:intergenic 20.0%
!! GAAAAAATTAGGGTTTAATT+TGG - Chr1:78622892-78622911 MsG0180004475.01.T01:intron 20.0%
!! GAAAATTGATGTAACAATAT+AGG - Chr1:78628530-78628549 MsG0180004475.01.T01:intron 20.0%
!! GTAGTAAGAATAATGTAATT+TGG - Chr1:78627951-78627970 MsG0180004475.01.T01:intron 20.0%
!! TAATTGGAGAAAAATTATAG+GGG + Chr1:78624438-78624457 None:intergenic 20.0%
!! TACATAATATTAACCATCAA+GGG - Chr1:78623410-78623429 MsG0180004475.01.T01:intron 20.0%
!! TATCATTATGAAGTATGAAA+CGG + Chr1:78629096-78629115 None:intergenic 20.0%
!! TATTTAACCAACCAATATTA+CGG + Chr1:78629840-78629859 None:intergenic 20.0%
!! TCCAATTTGAATTTAATTCA+AGG - Chr1:78625691-78625710 MsG0180004475.01.T01:intron 20.0%
!! TTGTATTAAAATGTATACTC+TGG - Chr1:78625641-78625660 MsG0180004475.01.T01:intron 20.0%
!!! AAAAAATTCATCTTCACTTT+TGG + Chr1:78624286-78624305 None:intergenic 20.0%
!!! AAAAATTAGGGTTTAATTTG+GGG - Chr1:78622894-78622913 MsG0180004475.01.T01:intron 20.0%
!!! AAACAGTAAGATTTTGAAAT+TGG - Chr1:78629574-78629593 MsG0180004475.01.T01:intron 20.0%
!!! AACAGTAAGATTTTGAAATT+GGG - Chr1:78629575-78629594 MsG0180004475.01.T01:intron 20.0%
!!! AACTAAATTTTACTCTATCA+TGG + Chr1:78626367-78626386 None:intergenic 20.0%
!!! AATTTTTGCGATACTTTTTT+CGG + Chr1:78623887-78623906 None:intergenic 20.0%
!!! ATTTCAAAATCTTACTGTTT+TGG + Chr1:78629574-78629593 None:intergenic 20.0%
!!! CGGTGTTTATATATTTTTTT+TGG - Chr1:78624628-78624647 MsG0180004475.01.T01:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + Chr1:78629657-78629676 None:intergenic 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - Chr1:78623833-78623852 MsG0180004475.01.T01:intron 20.0%
!!! TGAAAGATCAATTTTCTAAT+TGG - Chr1:78627639-78627658 MsG0180004475.01.T01:CDS 20.0%
!!! TGAAATGGATCAATTATTTT+GGG + Chr1:78629679-78629698 None:intergenic 20.0%
!!! TTGAAATGGATCAATTATTT+TGG + Chr1:78629680-78629699 None:intergenic 20.0%
!!! TTGACTTTTTCAATAAAAGT+AGG - Chr1:78626647-78626666 MsG0180004475.01.T01:intron 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG + Chr1:78624200-78624219 None:intergenic 20.0%
!!! TTTTAGACAAAATAAGTTTG+AGG + Chr1:78629400-78629419 None:intergenic 20.0%
!!! TTTTCCTCAATTCATTTAAA+TGG - Chr1:78626326-78626345 MsG0180004475.01.T01:intron 20.0%
!!! TTTTGGGTTAATTATGTTTT+TGG - Chr1:78623673-78623692 MsG0180004475.01.T01:intron 20.0%
!!! TTTTTGGTTACAAAAAGTTT+AGG - Chr1:78624644-78624663 MsG0180004475.01.T01:intron 20.0%
!!! TTTTTTGTTTTTCTAGATCT+AGG + Chr1:78630524-78630543 None:intergenic 20.0%
! AAACAAATTTGGATTGAGTA+AGG + Chr1:78623792-78623811 None:intergenic 25.0%
! AAATAGGAATATTGAGAATG+AGG + Chr1:78626127-78626146 None:intergenic 25.0%
! AACACTTCAACAGTATAAAA+AGG + Chr1:78626991-78627010 None:intergenic 25.0%
! AACTTAGAATGAAAAGACTA+AGG + Chr1:78629199-78629218 None:intergenic 25.0%
! AAGGTTAACATATGATATGT+TGG + Chr1:78628676-78628695 None:intergenic 25.0%
! AATATTATGTATGTGTGCTT+TGG + Chr1:78623401-78623420 None:intergenic 25.0%
! AATCAAAACAGAGAAAATAG+TGG - Chr1:78626052-78626071 MsG0180004475.01.T01:intron 25.0%
! AATTGATGTAACAATATAGG+AGG - Chr1:78628533-78628552 MsG0180004475.01.T01:intron 25.0%
! AATTGGAGAAAAATTATAGG+GGG + Chr1:78624437-78624456 None:intergenic 25.0%
! ACATAATATTAACCATCAAG+GGG - Chr1:78623411-78623430 MsG0180004475.01.T01:intron 25.0%
! ACATGATTACATATAAACAC+CGG + Chr1:78624851-78624870 None:intergenic 25.0%
! AGAAAATACGAATCTAACTA+AGG + Chr1:78623149-78623168 None:intergenic 25.0%
! AGAAATGAATGAATTTGTGA+AGG + Chr1:78630311-78630330 None:intergenic 25.0%
! AGCTAAGAAGTGAAAAAATT+AGG - Chr1:78622881-78622900 MsG0180004475.01.T01:intron 25.0%
! AGGTTAACATATGATATGTT+GGG + Chr1:78628675-78628694 None:intergenic 25.0%
! ATATGAAAATGATCTTACAG+TGG + Chr1:78625667-78625686 None:intergenic 25.0%
! ATATTAAAATGACATTTGCG+AGG - Chr1:78629909-78629928 MsG0180004475.01.T01:intron 25.0%
! ATTCTCAATATTCCTATTTC+AGG - Chr1:78626128-78626147 MsG0180004475.01.T01:intron 25.0%
! CAAATACACCAATTTCAAAT+GGG + Chr1:78627300-78627319 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - Chr1:78624347-78624366 MsG0180004475.01.T01:intron 25.0%
! CTCGAATAAAAAGGTTAAAT+TGG - Chr1:78629878-78629897 MsG0180004475.01.T01:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG + Chr1:78629727-78629746 None:intergenic 25.0%
! GAAATGAATGAATTTGTGAA+GGG + Chr1:78630310-78630329 None:intergenic 25.0%
! GAATAGAGAAAGTAATTGTT+TGG + Chr1:78626477-78626496 None:intergenic 25.0%
! GAATTAAATTCAAATTGGAC+TGG + Chr1:78625690-78625709 None:intergenic 25.0%
! GCTAAGAAGTGAAAAAATTA+GGG - Chr1:78622882-78622901 MsG0180004475.01.T01:intron 25.0%
! TAAGAACAAAACATACATGT+AGG + Chr1:78625960-78625979 None:intergenic 25.0%
! TAATTGCAATACCGTAATAT+TGG - Chr1:78629826-78629845 MsG0180004475.01.T01:intron 25.0%
! TATGATTACCTTGATTATGT+AGG + Chr1:78628648-78628667 None:intergenic 25.0%
! TCAAATACACCAATTTCAAA+TGG + Chr1:78627301-78627320 None:intergenic 25.0%
! TCAAATAGAATCACAAAAAG+AGG - Chr1:78625258-78625277 MsG0180004475.01.T01:intron 25.0%
! TCTATAACATCTTAATGAAG+AGG + Chr1:78630062-78630081 None:intergenic 25.0%
! TGCATACACTAATCAAAATT+GGG - Chr1:78625041-78625060 MsG0180004475.01.T01:intron 25.0%
! TTAAGTTTAACAGAGTTCTA+CGG + Chr1:78628780-78628799 None:intergenic 25.0%
! TTCTTTAATGACAAATCATG+TGG + Chr1:78627334-78627353 None:intergenic 25.0%
! TTTCCATATCATCAAAACTA+AGG - Chr1:78627030-78627049 MsG0180004475.01.T01:intron 25.0%
! TTTGAATGAAAAGATAGAGA+AGG + Chr1:78625243-78625262 None:intergenic 25.0%
!! AAAGCTTCTTCTTTTAACAA+AGG + Chr1:78626627-78626646 None:intergenic 25.0%
!! AATTTTTGCATTTCTTTTGG+AGG - Chr1:78625929-78625948 MsG0180004475.01.T01:intron 25.0%
!! ATAATGATATGCGTTTTTGT+TGG - Chr1:78629107-78629126 MsG0180004475.01.T01:intron 25.0%
!! TACACTATTAATTGCAGTTT+TGG - Chr1:78629369-78629388 MsG0180004475.01.T01:intron 25.0%
!! TAGTTAGATTCGTATTTTCT+GGG - Chr1:78623149-78623168 MsG0180004475.01.T01:CDS 25.0%
!! TATGAATATCTCTTATTTGC+AGG - Chr1:78626587-78626606 MsG0180004475.01.T01:intron 25.0%
!! TCAACAGTATAAAAAGGTAT+TGG + Chr1:78626985-78627004 None:intergenic 25.0%
!! TCCAAGATTTAAAGTTTCTA+GGG - Chr1:78630722-78630741 MsG0180004475.01.T01:CDS 25.0%
!! TCGAATTTTTGCATTTCTTT+TGG - Chr1:78625926-78625945 MsG0180004475.01.T01:intron 25.0%
!! TCTTGAATAAAATGTTTTGC+TGG - Chr1:78626879-78626898 MsG0180004475.01.T01:intron 25.0%
!! TTAGTTAGATTCGTATTTTC+TGG - Chr1:78623148-78623167 MsG0180004475.01.T01:CDS 25.0%
!! TTCCAAGATTTAAAGTTTCT+AGG - Chr1:78630721-78630740 MsG0180004475.01.T01:CDS 25.0%
!! TTGCATTTTTCCAAATTCAT+GGG + Chr1:78627501-78627520 None:intergenic 25.0%
!! TTTGCATTTTTCCAAATTCA+TGG + Chr1:78627502-78627521 None:intergenic 25.0%
!! TTTGCTGTAAATTCTTTGAT+AGG - Chr1:78623008-78623027 MsG0180004475.01.T01:intron 25.0%
!!! AAAATTAGGGTTTAATTTGG+GGG - Chr1:78622895-78622914 MsG0180004475.01.T01:intron 25.0%
!!! ACTTTTTTGTGTAAATTGTG+AGG - Chr1:78629941-78629960 MsG0180004475.01.T01:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + Chr1:78629658-78629677 None:intergenic 25.0%
!!! TATCCTTAGTTTTGATGATA+TGG + Chr1:78627036-78627055 None:intergenic 25.0%
!!! TTAAAAAAATTTTTTGGCGG+CGG + Chr1:78630419-78630438 None:intergenic 25.0%
!!! TTATTTTAGTGTTCTTCACA+AGG + Chr1:78627989-78628008 None:intergenic 25.0%
!!! TTTGGTGGTTTTTGTATTAT+TGG + Chr1:78623383-78623402 None:intergenic 25.0%
!!! TTTTGGCTTAATTGTAGTTT+TGG + Chr1:78629604-78629623 None:intergenic 25.0%
AAAAGAGGAGATCGAAAAAA+TGG - Chr1:78625273-78625292 MsG0180004475.01.T01:intron 30.0%
AAAGAGGAGATCGAAAAAAT+GGG - Chr1:78625274-78625293 MsG0180004475.01.T01:intron 30.0%
AAATCACAACAGTAACATGA+AGG + Chr1:78628932-78628951 None:intergenic 30.0%
AAGAGAAGGAAGAAATACAT+AGG + Chr1:78630459-78630478 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + Chr1:78623716-78623735 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG - Chr1:78624157-78624176 MsG0180004475.01.T01:intron 30.0%
AATACGAATCTAACTAAGGA+CGG + Chr1:78623145-78623164 None:intergenic 30.0%
AATTCATGGCGATATATTTG+AGG - Chr1:78624888-78624907 MsG0180004475.01.T01:intron 30.0%
ACCCTAGAAACTTTAAATCT+TGG + Chr1:78630726-78630745 None:intergenic 30.0%
AGAAATGTTAAGGCTAGAAA+CGG + Chr1:78630483-78630502 None:intergenic 30.0%
AGAGATTGTATTCTTCTTTG+TGG + Chr1:78623441-78623460 None:intergenic 30.0%
AGTTTATCAATGAAGGTTAG+TGG - Chr1:78627748-78627767 MsG0180004475.01.T01:intron 30.0%
ATCAAAAGCTCTTTGAACTT+GGG - Chr1:78630876-78630895 MsG0180004475.01.T01:five_prime_UTR 30.0%
ATCCTATGATGAATTCCATA+TGG + Chr1:78628065-78628084 None:intergenic 30.0%
ATGGAAATATTTCACGAATG+AGG + Chr1:78629137-78629156 None:intergenic 30.0%
ATGGAGAAGTTTATCAATGA+AGG - Chr1:78627741-78627760 MsG0180004475.01.T01:intron 30.0%
ATTCATGGCGATATATTTGA+GGG - Chr1:78624889-78624908 MsG0180004475.01.T01:intron 30.0%
ATTTAACGTGCTTGATCTAA+GGG + Chr1:78624589-78624608 None:intergenic 30.0%
CAAAACTATCTTCTGATACA+AGG - Chr1:78629345-78629364 MsG0180004475.01.T01:intron 30.0%
CAAATTATCTGGTTATCTCA+TGG - Chr1:78629272-78629291 MsG0180004475.01.T01:intron 30.0%
CAACATGAATGATCGATTAA+AGG - Chr1:78625732-78625751 MsG0180004475.01.T01:intron 30.0%
CAGCAATTTCATTCATATCT+CGG + Chr1:78625767-78625786 None:intergenic 30.0%
CATCAAAACTAAGGATAGTT+TGG - Chr1:78627039-78627058 MsG0180004475.01.T01:intron 30.0%
CGTTAATCATAAAGAAACCA+TGG - Chr1:78623244-78623263 MsG0180004475.01.T01:intron 30.0%
CTGCATACACTAATCAAAAT+TGG - Chr1:78625040-78625059 MsG0180004475.01.T01:intron 30.0%
GAATTTGGAAAAATGCAAAG+AGG - Chr1:78627503-78627522 MsG0180004475.01.T01:intron 30.0%
GAGGTGTATATTAGAATTAG+TGG - Chr1:78627522-78627541 MsG0180004475.01.T01:intron 30.0%
GATGAAATCATGTTCCAAAT+TGG - Chr1:78628101-78628120 MsG0180004475.01.T01:intron 30.0%
GGTTAAATATGTTAGACATC+CGG - Chr1:78629851-78629870 MsG0180004475.01.T01:intron 30.0%
GTTAAACTTAATCTACACCT+TGG - Chr1:78628789-78628808 MsG0180004475.01.T01:intron 30.0%
TAACATATGATATGTTGGGT+GGG + Chr1:78628671-78628690 None:intergenic 30.0%
TAATTTACTGTGCTTACCAT+TGG + Chr1:78624490-78624509 None:intergenic 30.0%
TAGTGATGTGTGAAATTTGA+GGG - Chr1:78622922-78622941 MsG0180004475.01.T01:intron 30.0%
TATCTATTAGAACTGCTTAG+AGG + Chr1:78627904-78627923 None:intergenic 30.0%
TATTTAACGTGCTTGATCTA+AGG + Chr1:78624590-78624609 None:intergenic 30.0%
TCCTATGATGAATTCCATAT+GGG + Chr1:78628064-78628083 None:intergenic 30.0%
TGGTTACAAAAAGTTTAGGT+GGG - Chr1:78624648-78624667 MsG0180004475.01.T01:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + Chr1:78629742-78629761 None:intergenic 30.0%
TTAACATATGATATGTTGGG+TGG + Chr1:78628672-78628691 None:intergenic 30.0%
TTAGTGATGTGTGAAATTTG+AGG - Chr1:78622921-78622940 MsG0180004475.01.T01:intron 30.0%
TTCAAGATTTATGTAGCATG+AGG + Chr1:78627265-78627284 None:intergenic 30.0%
TTGGTTACAAAAAGTTTAGG+TGG - Chr1:78624647-78624666 MsG0180004475.01.T01:intron 30.0%
TTTGTTAGAAGATTTAGTCC+TGG - Chr1:78626538-78626557 MsG0180004475.01.T01:intron 30.0%
! AAAATGTGAGCATTTTGCTT+TGG + Chr1:78628461-78628480 None:intergenic 30.0%
! AACTCTTTCTCTCTCTAAAA+CGG - Chr1:78622171-78622190 MsG0180004475.01.T01:CDS 30.0%
! AGCAGTTCTAATAGATATGA+TGG - Chr1:78627907-78627926 MsG0180004475.01.T01:intron 30.0%
! AGTCTTTTCATTCTAAGTTC+TGG - Chr1:78629200-78629219 MsG0180004475.01.T01:intron 30.0%
! CAAGTTTAGAACACTATGAA+AGG + Chr1:78624019-78624038 None:intergenic 30.0%
! CATTTGTTCTCAATTTGCTT+GGG - Chr1:78630111-78630130 MsG0180004475.01.T01:intron 30.0%
! CTTTTTATGCAATTTGTCCA+AGG + Chr1:78628809-78628828 None:intergenic 30.0%
! GTTCTTATATTTCTGCAGTT+TGG - Chr1:78626074-78626093 MsG0180004475.01.T01:intron 30.0%
! TAATGATTCTCATTTGTTGC+AGG - Chr1:78630820-78630839 MsG0180004475.01.T01:five_prime_UTR 30.0%
! TCATTTGTTCTCAATTTGCT+TGG - Chr1:78630110-78630129 MsG0180004475.01.T01:intron 30.0%
! TGAATAAAATGTTTTGCTGG+CGG - Chr1:78626882-78626901 MsG0180004475.01.T01:intron 30.0%
! TGCATTTTTCCAAATTCATG+GGG + Chr1:78627500-78627519 None:intergenic 30.0%
! TGGATATACTATTTCTCCAA+TGG - Chr1:78624471-78624490 MsG0180004475.01.T01:intron 30.0%
! TTCAGAGAACACTTCTAAAA+AGG + Chr1:78628498-78628517 None:intergenic 30.0%
! TTGATAGTATTGCCTGTTAA+CGG + Chr1:78626173-78626192 None:intergenic 30.0%
! TTTCTTTGCTGATTATACTG+AGG - Chr1:78630850-78630869 MsG0180004475.01.T01:five_prime_UTR 30.0%
! TTTGAGAATGTTGGTGAATT+CGG - Chr1:78630672-78630691 MsG0180004475.01.T01:intron 30.0%
! TTTTATTGACCCCATGAATT+TGG - Chr1:78627488-78627507 MsG0180004475.01.T01:intron 30.0%
!! AACCATGGTTTGAAGTATTT+TGG - Chr1:78623259-78623278 MsG0180004475.01.T01:intron 30.0%
!! ACCATGGTTTGAAGTATTTT+GGG - Chr1:78623260-78623279 MsG0180004475.01.T01:intron 30.0%
!! ACCTTTTTATTCGAGTTAAC+CGG + Chr1:78629873-78629892 None:intergenic 30.0%
!! TAATACTTGGTGCTTTGATT+CGG - Chr1:78630574-78630593 MsG0180004475.01.T01:CDS 30.0%
!! TTTTCTCCAATTATTGGTCT+TGG - Chr1:78624445-78624464 MsG0180004475.01.T01:intron 30.0%
!!! AAAGTAGGCTTTTTGACTTT+TGG - Chr1:78626662-78626681 MsG0180004475.01.T01:intron 30.0%
!!! AGAAGATAGTTTTGATAGCA+AGG + Chr1:78629299-78629318 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG + Chr1:78623760-78623779 None:intergenic 30.0%
!!! TCTGTAATGGCTTTTTTAAG+AGG - Chr1:78626688-78626707 MsG0180004475.01.T01:intron 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG + Chr1:78623761-78623780 None:intergenic 30.0%
!!! TGATTTTGGTTATGTGTTGT+TGG - Chr1:78630763-78630782 MsG0180004475.01.T01:CDS 30.0%
!!! TGCTGTGTTTTGTTTTTTTG+AGG - Chr1:78630648-78630667 MsG0180004475.01.T01:intron 30.0%
!!! TGTTTTTGGTCCCTATAAAA+TGG + Chr1:78624186-78624205 None:intergenic 30.0%
!!! TTCTCTATTCCTTTTTCAAC+TGG - Chr1:78626487-78626506 MsG0180004475.01.T01:intron 30.0%
!!! TTTTGAGGTTTTGAGAATGT+TGG - Chr1:78630663-78630682 MsG0180004475.01.T01:intron 30.0%
AAAAGATAGAGAAGGTTGAG+AGG + Chr1:78625235-78625254 None:intergenic 35.0%
AAAATGGCACCAGTTGAAAA+AGG + Chr1:78626499-78626518 None:intergenic 35.0%
AACACATAACCAAAATCAGC+AGG + Chr1:78630761-78630780 None:intergenic 35.0%
AAGAAGTTGAAGAAACGACA+CGG + Chr1:78625449-78625468 None:intergenic 35.0%
AAGCTTCAGTTAGTGTAATG+AGG + Chr1:78625113-78625132 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG - Chr1:78629770-78629789 MsG0180004475.01.T01:intron 35.0%
AATGAATTTGTGAAGGGAGT+GGG + Chr1:78630304-78630323 None:intergenic 35.0%
AATGAGCTGATAGACACTAT+AGG + Chr1:78629162-78629181 None:intergenic 35.0%
ACCCAAAATACTTCAAACCA+TGG + Chr1:78623264-78623283 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + Chr1:78629644-78629663 None:intergenic 35.0%
AGAAGATTTAGTCCTGGTTA+TGG - Chr1:78626544-78626563 MsG0180004475.01.T01:intron 35.0%
AGAGTGTATGCTGAAAATAG+TGG + Chr1:78625022-78625041 None:intergenic 35.0%
AGCTTCAGTTAGTGTAATGA+GGG + Chr1:78625112-78625131 None:intergenic 35.0%
AGGGTCGTTGATCAAATAAA+TGG + Chr1:78630157-78630176 None:intergenic 35.0%
AGTTCTACGGAATTGGAATT+TGG + Chr1:78628767-78628786 None:intergenic 35.0%
AGTTGATTGTGGAAGAGAAA+TGG - Chr1:78628968-78628987 MsG0180004475.01.T01:intron 35.0%
ATAAGTGTGAAATGAGCCAA+GGG - Chr1:78629771-78629790 MsG0180004475.01.T01:intron 35.0%
ATCTTCTGATACCAATCTCA+TGG - Chr1:78629312-78629331 MsG0180004475.01.T01:intron 35.0%
ATGAGCTGATAGACACTATA+GGG + Chr1:78629161-78629180 None:intergenic 35.0%
ATTATGTATGTGTGCTTTGG+TGG + Chr1:78623398-78623417 None:intergenic 35.0%
CAGATATAGTCGCTATTGTA+AGG + Chr1:78628136-78628155 None:intergenic 35.0%
CATCAAAAGCTCTTTGAACT+TGG - Chr1:78630875-78630894 MsG0180004475.01.T01:five_prime_UTR 35.0%
CATTGATGAGAAAGAGCTAA+TGG - Chr1:78627722-78627741 MsG0180004475.01.T01:intron 35.0%
CGTTTCTTCAACTTCTTCTA+CGG - Chr1:78625452-78625471 MsG0180004475.01.T01:intron 35.0%
CTAGATCCTATAACTCAGAT+TGG + Chr1:78626297-78626316 None:intergenic 35.0%
CTTTGCCTTCACACTATAAT+CGG + Chr1:78627166-78627185 None:intergenic 35.0%
GAAATATTTCACGAATGAGG+AGG + Chr1:78629134-78629153 None:intergenic 35.0%
GAAATGTTAAGGCTAGAAAC+GGG + Chr1:78630482-78630501 None:intergenic 35.0%
GATCAACTCCTACATAATCA+AGG - Chr1:78628637-78628656 MsG0180004475.01.T01:intron 35.0%
GATGAAGAAGAATGAGTTTG+CGG + Chr1:78622533-78622552 None:intergenic 35.0%
GCACCTATTATTTCCGTAAA+TGG - Chr1:78628594-78628613 MsG0180004475.01.T01:intron 35.0%
GCTCCATTTACGGAAATAAT+AGG + Chr1:78628600-78628619 None:intergenic 35.0%
GTGAGTTTGAAAGAAAGAAC+TGG - Chr1:78622444-78622463 MsG0180004475.01.T01:intron 35.0%
TAAGGACATGCTAACCAATT+TGG + Chr1:78628118-78628137 None:intergenic 35.0%
TCAAGTAATCATGTCCCATA+TGG - Chr1:78628047-78628066 MsG0180004475.01.T01:intron 35.0%
TCCCATATGGAATTCATCAT+AGG - Chr1:78628060-78628079 MsG0180004475.01.T01:intron 35.0%
TCCGGTTAACTCGAATAAAA+AGG - Chr1:78629869-78629888 MsG0180004475.01.T01:intron 35.0%
TCGTCTGATCTTAAATCAGA+CGG + Chr1:78630209-78630228 None:intergenic 35.0%
TCTTCATCTGAAGAAATCTG+TGG - Chr1:78622545-78622564 MsG0180004475.01.T01:intron 35.0%
TGCAATACCGTAATATTGGT+TGG - Chr1:78629830-78629849 MsG0180004475.01.T01:intron 35.0%
TGTGCAAATTAACCATAACC+AGG + Chr1:78626559-78626578 None:intergenic 35.0%
TTAACAGAGTTCTACGGAAT+TGG + Chr1:78628774-78628793 None:intergenic 35.0%
TTAATACAAGACGCACAACA+GGG + Chr1:78625630-78625649 None:intergenic 35.0%
TTAATGAAGAGGCAAGTGTA+AGG + Chr1:78630051-78630070 None:intergenic 35.0%
TTGAGAATGAGGACAACAAA+AGG + Chr1:78626116-78626135 None:intergenic 35.0%
TTGCTACCAATCTGAGTTAT+AGG - Chr1:78626288-78626307 MsG0180004475.01.T01:intron 35.0%
TTGGAGAAGCAAAAATCGTT+TGG + Chr1:78627849-78627868 None:intergenic 35.0%
TTTAATACAAGACGCACAAC+AGG + Chr1:78625631-78625650 None:intergenic 35.0%
! AATAAAATGTTTTGCTGGCG+GGG - Chr1:78626884-78626903 MsG0180004475.01.T01:intron 35.0%
! AATGTTGGTGAATTCGGATT+TGG - Chr1:78630678-78630697 MsG0180004475.01.T01:intron 35.0%
! ACAAAAAGTTTAGGTGGGTT+CGG - Chr1:78624653-78624672 MsG0180004475.01.T01:intron 35.0%
! ACTCTTTGCTAGCTTAGTTA+TGG + Chr1:78629008-78629027 None:intergenic 35.0%
! ATTCATCGAAGAGAAGCATA+AGG - Chr1:78622491-78622510 MsG0180004475.01.T01:intron 35.0%
! CAAAGCACCAAGTATTAAAC+CGG + Chr1:78630571-78630590 None:intergenic 35.0%
! CATTAGCTCTTTCTCATCAA+TGG + Chr1:78627724-78627743 None:intergenic 35.0%
! CTGTGCTGAGTAAAAGTTTT+TGG - Chr1:78625505-78625524 MsG0180004475.01.T01:intron 35.0%
! GAAAGTGTGCATATGTTCTA+TGG - Chr1:78626780-78626799 MsG0180004475.01.T01:intron 35.0%
! GAATAAAATGTTTTGCTGGC+GGG - Chr1:78626883-78626902 MsG0180004475.01.T01:intron 35.0%
! GTTTGGAATGCAATAAACAC+TGG + Chr1:78626460-78626479 None:intergenic 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + Chr1:78623700-78623719 None:intergenic 35.0%
! TAGCAGAACCCATTTGAAAT+TGG - Chr1:78627289-78627308 MsG0180004475.01.T01:intron 35.0%
! TGACTTTTGGTCATCTGTAA+TGG - Chr1:78626675-78626694 MsG0180004475.01.T01:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + Chr1:78623701-78623720 None:intergenic 35.0%
!! ATGGTTTGAAGTATTTTGGG+TGG - Chr1:78623263-78623282 MsG0180004475.01.T01:intron 35.0%
!! ATTTGTTATTACCTCAGCGT+AGG + Chr1:78622322-78622341 None:intergenic 35.0%
!! GTTGGCACAGTTTTATGATT+TGG - Chr1:78630610-78630629 MsG0180004475.01.T01:intron 35.0%
!! TAGAAGGTCGCCATTTTATA+GGG - Chr1:78624173-78624192 MsG0180004475.01.T01:intron 35.0%
!! TGAAGTATTTTGGGTGGTTT+GGG - Chr1:78623269-78623288 MsG0180004475.01.T01:intron 35.0%
!! TTAGAAGGTCGCCATTTTAT+AGG - Chr1:78624172-78624191 MsG0180004475.01.T01:intron 35.0%
!! TTGAAGTATTTTGGGTGGTT+TGG - Chr1:78623268-78623287 MsG0180004475.01.T01:intron 35.0%
!! TTTTCTAGATCTAGGACCAT+AGG + Chr1:78630516-78630535 None:intergenic 35.0%
!!! CCTTTGTTTTTTGTCTGTTC+CGG - Chr1:78630549-78630568 MsG0180004475.01.T01:CDS 35.0%
!!! TTTTGCGATACTTTTTTCGG+TGG + Chr1:78623884-78623903 None:intergenic 35.0%
AAACTCCTTCAAAATCGCTC+CGG - Chr1:78622593-78622612 MsG0180004475.01.T01:intron 40.0%
AACAGATGGAGGAAGTTTCA+AGG + Chr1:78625306-78625325 None:intergenic 40.0%
AATCTCTCTAATCAAACCCG+CGG - Chr1:78625072-78625091 MsG0180004475.01.T01:intron 40.0%
AGAATGACAAGGAGAGAAGA+TGG - Chr1:78628572-78628591 MsG0180004475.01.T01:intron 40.0%
AGCCAAGGGGTCAATTAATT+CGG - Chr1:78629785-78629804 MsG0180004475.01.T01:intron 40.0%
AGGAAGAGATGCTCCATTTA+CGG + Chr1:78628610-78628629 None:intergenic 40.0%
AGTTGCGTCATTGTTGCTAA+AGG + Chr1:78627699-78627718 None:intergenic 40.0%
ATGTTTCGAATCTGCTCCTT+TGG - Chr1:78625400-78625419 MsG0180004475.01.T01:intron 40.0%
ATTCGAAACATCTGGATCTC+TGG + Chr1:78625391-78625410 None:intergenic 40.0%
CAGCAAGATCTACCTGAAAT+AGG + Chr1:78626143-78626162 None:intergenic 40.0%
CATATGTGATCTCGAACAGA+TGG + Chr1:78625320-78625339 None:intergenic 40.0%
CATGGTTGAGACTTGAGATT+CGG + Chr1:78622217-78622236 None:intergenic 40.0%
CCAAGACCAAGACCAATAAT+TGG + Chr1:78624454-78624473 None:intergenic 40.0%
CCGGAACAGACAAAAAACAA+AGG + Chr1:78630552-78630571 None:intergenic 40.0%
CGACAGAAAGAATGAAGAAG+CGG + Chr1:78625574-78625593 None:intergenic 40.0%
CGGGTTTGATTAGAGAGATT+GGG + Chr1:78625072-78625091 None:intergenic 40.0%
CTCTTCCACAATCAACTCAT+GGG + Chr1:78628965-78628984 None:intergenic 40.0%
CTGATAGACACTATAGGGTA+TGG + Chr1:78629156-78629175 None:intergenic 40.0%
CTTGCTTAGAACACACAATG+AGG - Chr1:78625838-78625857 MsG0180004475.01.T01:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + Chr1:78629643-78629662 None:intergenic 40.0%
GAAGGTTGAGAGGATAAAGA+TGG + Chr1:78625225-78625244 None:intergenic 40.0%
GAATGAATTTGTGAAGGGAG+TGG + Chr1:78630305-78630324 None:intergenic 40.0%
GAATGAGGACAACAAAAGGA+TGG + Chr1:78626112-78626131 None:intergenic 40.0%
GACAGAAAGAATGAAGAAGC+GGG + Chr1:78625573-78625592 None:intergenic 40.0%
GTACTCCGATTATAGTGTGA+AGG - Chr1:78627158-78627177 MsG0180004475.01.T01:intron 40.0%
GTCTGTTCCGGTTTAATACT+TGG - Chr1:78630561-78630580 MsG0180004475.01.T01:CDS 40.0%
GTTAGTGTAATGAGGGAAAG+AGG + Chr1:78625105-78625124 None:intergenic 40.0%
GTTGAGAGGATAAAGATGGT+GGG + Chr1:78625221-78625240 None:intergenic 40.0%
GTTGCGTCATTGTTGCTAAA+GGG + Chr1:78627698-78627717 None:intergenic 40.0%
TAAGTGTGAAATGAGCCAAG+GGG - Chr1:78629772-78629791 MsG0180004475.01.T01:intron 40.0%
TACAACGAAATGCTCTACAC+CGG - Chr1:78624608-78624627 MsG0180004475.01.T01:intron 40.0%
TCAAGGAGAGAAGAATGACA+AGG - Chr1:78628561-78628580 MsG0180004475.01.T01:intron 40.0%
TCTCTTCCACAATCAACTCA+TGG + Chr1:78628966-78628985 None:intergenic 40.0%
TGAATTTCGTTATCGCGTGT+TGG + Chr1:78622476-78622495 None:intergenic 40.0%
TGTGCATATGTTCTATGGCT+TGG - Chr1:78626785-78626804 MsG0180004475.01.T01:intron 40.0%
TTCTACCAGAGTCAGTGAAA+TGG + Chr1:78627209-78627228 None:intergenic 40.0%
TTGCGTCATTGTTGCTAAAG+GGG + Chr1:78627697-78627716 None:intergenic 40.0%
! CACTTCTTAGCTTTCTTCAC+CGG + Chr1:78622873-78622892 None:intergenic 40.0%
! TAGATTTGGGTACTGTGCAA+AGG - Chr1:78625990-78626009 MsG0180004475.01.T01:intron 40.0%
! TCTGTCGTTTACGCGATATA+AGG - Chr1:78625587-78625606 MsG0180004475.01.T01:intron 40.0%
! TGATTTAAGATCAGACGACC+TGG - Chr1:78630211-78630230 MsG0180004475.01.T01:CDS 40.0%
!! CACTATAATCGGAGTACTGA+AGG + Chr1:78627155-78627174 None:intergenic 40.0%
!! CATTACCATTTCACTGACTC+TGG - Chr1:78627201-78627220 MsG0180004475.01.T01:intron 40.0%
!! CCAATTATTGGTCTTGGTCT+TGG - Chr1:78624451-78624470 MsG0180004475.01.T01:intron 40.0%
!! GCACAGTTTTATGATTTGGC+CGG - Chr1:78630614-78630633 MsG0180004475.01.T01:intron 40.0%
!! GTTTTATGATTTGGCCGGTT+TGG - Chr1:78630619-78630638 MsG0180004475.01.T01:intron 40.0%
!! TGTTGCTGGAAGTATTCATG+AGG - Chr1:78626016-78626035 MsG0180004475.01.T01:intron 40.0%
!!! TGGTGCTTTGATTCGGTTTT+TGG - Chr1:78630581-78630600 MsG0180004475.01.T01:CDS 40.0%
ACACAGCAACACATCCAAAC+CGG + Chr1:78630636-78630655 None:intergenic 45.0%
ACCGGAGTCTTAACACTCTT+CGG + Chr1:78622855-78622874 None:intergenic 45.0%
AGAATGAGTTTGCGGAACGT+TGG + Chr1:78622525-78622544 None:intergenic 45.0%
AGGAGCAGATTCGAAACATC+TGG + Chr1:78625399-78625418 None:intergenic 45.0%
AGGGGTCAATTAATTCGGGA+CGG - Chr1:78629790-78629809 MsG0180004475.01.T01:intron 45.0%
ATGTGATCTCGAACAGATGG+AGG + Chr1:78625317-78625336 None:intergenic 45.0%
ATTGTGGGGAAAAGAGTTGC+CGG + Chr1:78625163-78625182 None:intergenic 45.0%
CAATATAGGAGGTCGTGTCA+AGG - Chr1:78628544-78628563 MsG0180004475.01.T01:intron 45.0%
CACCTCTATAAGTGCCCTTT+GGG + Chr1:78624715-78624734 None:intergenic 45.0%
CCCTTAACACTCTTCGCTTT+CGG + Chr1:78622789-78622808 None:intergenic 45.0%
CTGAAGAAATCTGTGGCTTC+TGG - Chr1:78622552-78622571 MsG0180004475.01.T01:intron 45.0%
CTGTGCAAAGGTTATGTTGC+TGG - Chr1:78626002-78626021 MsG0180004475.01.T01:intron 45.0%
CTTTGTGGATTTCCCCTTGA+TGG + Chr1:78623426-78623445 None:intergenic 45.0%
GATAGCAAGGACCATGAGAT+TGG + Chr1:78629286-78629305 None:intergenic 45.0%
GCACAACAGGGTCAACATTT+AGG + Chr1:78625618-78625637 None:intergenic 45.0%
GCCAAGGGGTCAATTAATTC+GGG - Chr1:78629786-78629805 MsG0180004475.01.T01:intron 45.0%
GCGGGTTTGATTAGAGAGAT+TGG + Chr1:78625073-78625092 None:intergenic 45.0%
GGTTGAGAGGATAAAGATGG+TGG + Chr1:78625222-78625241 None:intergenic 45.0%
GTCAATTAATTCGGGACGGA+GGG - Chr1:78629794-78629813 MsG0180004475.01.T01:intron 45.0%
GTTATTACCTCAGCGTAGGT+AGG + Chr1:78622318-78622337 None:intergenic 45.0%
TAATGAGGGAAAGAGGAGAG+AGG + Chr1:78625098-78625117 None:intergenic 45.0%
TCCCGAATTAATTGACCCCT+TGG + Chr1:78629790-78629809 None:intergenic 45.0%
TGAGGGTAACTGAGAGATAC+AGG + Chr1:78625348-78625367 None:intergenic 45.0%
TTCGGCTTCACAACAGCTTT+AGG + Chr1:78622771-78622790 None:intergenic 45.0%
! ATGGAGCATCTCTTCCTGTT+TGG - Chr1:78628613-78628632 MsG0180004475.01.T01:intron 45.0%
! GTAGGAGTTGATCTCCAAAC+AGG + Chr1:78628630-78628649 None:intergenic 45.0%
! GTTGGTGAATTCGGATTTGG+TGG - Chr1:78630681-78630700 MsG0180004475.01.T01:intron 45.0%
! GTTTTCTTGGGCTTGAGCTT+GGG + Chr1:78622267-78622286 None:intergenic 45.0%
! TTTGCTGCAGCGGTTTTCTT+GGG + Chr1:78622279-78622298 None:intergenic 45.0%
!! AGAGTCCCATGAGTTGATTG+TGG - Chr1:78628957-78628976 MsG0180004475.01.T01:intron 45.0%
!! CCGAAAGCGAAGAGTGTTAA+GGG - Chr1:78622786-78622805 MsG0180004475.01.T01:intron 45.0%
!! TTGGCTCAGTTGGTAAGGAA+CGG + Chr1:78624814-78624833 None:intergenic 45.0%
!!! GACGGAGGGAGTATTAGTTT+TGG + Chr1:78629621-78629640 None:intergenic 45.0%
!!! GAGTTTGTGCCTGCTGATTT+TGG - Chr1:78630749-78630768 MsG0180004475.01.T01:CDS 45.0%
!!! TTCGGTTTTTGGCGTTGAGT+TGG - Chr1:78630592-78630611 MsG0180004475.01.T01:intron 45.0%
!! CAAAAATTTATAATATTAAA+AGG + Chr1:78623658-78623677 None:intergenic 5.0%
!!! AAAAAATTCTAATTTTTTTT+GGG - Chr1:78623626-78623645 MsG0180004475.01.T01:intron 5.0%
!!! AATTAATTTAATTTACAAAA+TGG + Chr1:78626515-78626534 None:intergenic 5.0%
!!! AATTTATGTTTTTTTTTTTA+TGG - Chr1:78626742-78626761 MsG0180004475.01.T01:intron 5.0%
!!! ATTTAGATAAATATTTTTTT+TGG + Chr1:78624391-78624410 None:intergenic 5.0%
!!! CTTTTAATATTATAAATTTT+TGG - Chr1:78623656-78623675 MsG0180004475.01.T01:intron 5.0%
!!! TAAAAAATTCTAATTTTTTT+TGG - Chr1:78623625-78623644 MsG0180004475.01.T01:intron 5.0%
!!! TTTTGTTTAAAAAAATTTTT+TGG + Chr1:78630425-78630444 None:intergenic 5.0%
AACGACCCTGATCTGATCAC+CGG - Chr1:78630168-78630187 MsG0180004475.01.T01:CDS 50.0%
AACTAATACTCCCTCCGTCC+CGG - Chr1:78629622-78629641 MsG0180004475.01.T01:intron 50.0%
AATAGCTTAGGCATACCGCG+TGG - Chr1:78630251-78630270 MsG0180004475.01.T01:CDS 50.0%
ACGGCTATCATCACATCACC+CGG + Chr1:78630190-78630209 None:intergenic 50.0%
AGCAACCATGTCTGAGCCAA+AGG + Chr1:78625419-78625438 None:intergenic 50.0%
AGGCTAGAAACGGGAAGAGA+AGG + Chr1:78630473-78630492 None:intergenic 50.0%
AGGGTGCACAGCAATAGCTT+AGG - Chr1:78630239-78630258 MsG0180004475.01.T01:CDS 50.0%
ATACCGCGTGGAATCAGAGA+GGG - Chr1:78630263-78630282 MsG0180004475.01.T01:CDS 50.0%
ATCACCCGGTGATCAGATCA+GGG + Chr1:78630176-78630195 None:intergenic 50.0%
ATCAGACGACCTGGATCTGA+GGG - Chr1:78630220-78630239 MsG0180004475.01.T01:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + Chr1:78629639-78629658 None:intergenic 50.0%
CACAACCTTCTGCAAGGAAG+TGG - Chr1:78624787-78624806 MsG0180004475.01.T01:intron 50.0%
CCTTGATCCTTCCAAGGTGA+GGG + Chr1:78625365-78625384 None:intergenic 50.0%
CGAACACACAACCTTCTGCA+AGG - Chr1:78624781-78624800 MsG0180004475.01.T01:intron 50.0%
CTTCTCTCTTGCTTACGACG+CGG - Chr1:78630368-78630387 MsG0180004475.01.T01:CDS 50.0%
CTTCTTAGCAGGAGCAGTAG+CGG + Chr1:78622646-78622665 None:intergenic 50.0%
GCACCTCTATAAGTGCCCTT+TGG + Chr1:78624716-78624735 None:intergenic 50.0%
GGGCCACAGAGATTGAATCT+GGG - Chr1:78630131-78630150 MsG0180004475.01.T01:intron 50.0%
GGTCAATTAATTCGGGACGG+AGG - Chr1:78629793-78629812 MsG0180004475.01.T01:intron 50.0%
TAAGGCTGCAACTAAGCCGA+AGG - Chr1:78622692-78622711 MsG0180004475.01.T01:intron 50.0%
TCAGTTACCCTCACCTTGGA+AGG - Chr1:78625355-78625374 MsG0180004475.01.T01:intron 50.0%
TCCTTGATCCTTCCAAGGTG+AGG + Chr1:78625366-78625385 None:intergenic 50.0%
TCTCTCAGTTACCCTCACCT+TGG - Chr1:78625351-78625370 MsG0180004475.01.T01:intron 50.0%
TGCTCCTGCTAAGAAGGCTA+AGG - Chr1:78622650-78622669 MsG0180004475.01.T01:intron 50.0%
TGCTGCACTACTCCGTTAAC+AGG - Chr1:78626158-78626177 MsG0180004475.01.T01:intron 50.0%
TGGCCCAGATTCAATCTCTG+TGG + Chr1:78630137-78630156 None:intergenic 50.0%
TGGGCCACAGAGATTGAATC+TGG - Chr1:78630130-78630149 MsG0180004475.01.T01:intron 50.0%
TGGTCTCCTTGATCCTTCCA+AGG + Chr1:78625371-78625390 None:intergenic 50.0%
TGTGAAGAAAGCGGCGAAGA+AGG - Chr1:78622815-78622834 MsG0180004475.01.T01:intron 50.0%
TTCACAGCAGCTTTCGCCTT+CGG + Chr1:78622711-78622730 None:intergenic 50.0%
! ACAGCCTTAGCCTTCTTAGC+AGG + Chr1:78622657-78622676 None:intergenic 50.0%
! CTTTGCTGCAGCGGTTTTCT+TGG + Chr1:78622280-78622299 None:intergenic 50.0%
! GGGTGGTTTGGGAATGTGAA+AGG - Chr1:78623280-78623299 MsG0180004475.01.T01:intron 50.0%
! GGGTTTCTTTTGCCCAAACG+TGG + Chr1:78625201-78625220 None:intergenic 50.0%
! GGTTTTCTTGGGCTTGAGCT+TGG + Chr1:78622268-78622287 None:intergenic 50.0%
! TTCTTCGCCGCTTTCTTCAC+AGG + Chr1:78622816-78622835 None:intergenic 50.0%
!! ACACGTTGGCTCAGTTGGTA+AGG + Chr1:78624819-78624838 None:intergenic 50.0%
!! GCCGAAAGCGAAGAGTGTTA+AGG - Chr1:78622785-78622804 MsG0180004475.01.T01:intron 50.0%
!! GCCGAAGAGTGTTAAGACTC+CGG - Chr1:78622851-78622870 MsG0180004475.01.T01:intron 50.0%
!! TGGCTCAGTTGGTAAGGAAC+GGG + Chr1:78624813-78624832 None:intergenic 50.0%
!! TTTGGCTTTGCGGCAGCTTT+CGG + Chr1:78622735-78622754 None:intergenic 50.0%
ACCGGTGTACCAACACACGT+TGG + Chr1:78624833-78624852 None:intergenic 55.0%
ACGACCCTGATCTGATCACC+GGG - Chr1:78630169-78630188 MsG0180004475.01.T01:CDS 55.0%
CACCAACACTGCCCTCACAT+CGG - Chr1:78624748-78624767 MsG0180004475.01.T01:intron 55.0%
CATACCGCGTGGAATCAGAG+AGG - Chr1:78630262-78630281 MsG0180004475.01.T01:CDS 55.0%
CATCACCCGGTGATCAGATC+AGG + Chr1:78630177-78630196 None:intergenic 55.0%
CCAACTGAGCCAACGTGTGT+TGG - Chr1:78624821-78624840 MsG0180004475.01.T01:intron 55.0%
CCCTCACCTTGGAAGGATCA+AGG - Chr1:78625362-78625381 MsG0180004475.01.T01:intron 55.0%
CGCTACTGCTCCTGCTAAGA+AGG - Chr1:78622644-78622663 MsG0180004475.01.T01:intron 55.0%
CGGCTTAGTTGCAGCCTTAG+CGG + Chr1:78622691-78622710 None:intergenic 55.0%
CTATAAGTGCCCTTTGGGCC+CGG + Chr1:78624710-78624729 None:intergenic 55.0%
CTCTCATCCTACCTACGCTG+AGG - Chr1:78622308-78622327 MsG0180004475.01.T01:intron 55.0%
CTTCAAAATCGCTCCGGCAG+CGG - Chr1:78622599-78622618 MsG0180004475.01.T01:intron 55.0%
GAAGAAAGCGGCGAAGAAGG+TGG - Chr1:78622818-78622837 MsG0180004475.01.T01:intron 55.0%
GAGAGGCTTCTTTGCTGCAG+CGG + Chr1:78622289-78622308 None:intergenic 55.0%
GATCAGACGACCTGGATCTG+AGG - Chr1:78630219-78630238 MsG0180004475.01.T01:CDS 55.0%
GATTCCCTCTGCCGATGTGA+GGG + Chr1:78624762-78624781 None:intergenic 55.0%
GCGTAGGTAGGATGAGAGAG+AGG + Chr1:78622306-78622325 None:intergenic 55.0%
GGGTACGCCTGTGAAGAAAG+CGG - Chr1:78622806-78622825 MsG0180004475.01.T01:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + Chr1:78629635-78629654 None:intergenic 55.0%
TAATTCGGGACGGAGGGAGT+AGG - Chr1:78629800-78629819 MsG0180004475.01.T01:intron 55.0%
TACCCCTCTCTGATTCCACG+CGG + Chr1:78630269-78630288 None:intergenic 55.0%
TACCGCGTGGAATCAGAGAG+GGG - Chr1:78630264-78630283 MsG0180004475.01.T01:CDS 55.0%
TATTCCAGCCGTGCGTTGCA+CGG + Chr1:78623321-78623340 None:intergenic 55.0%
TGCCGCAAAGCCAAAAGCAG+CGG - Chr1:78622740-78622759 MsG0180004475.01.T01:intron 55.0%
TGTTACGAAGCCAGCCGCTA+AGG - Chr1:78622674-78622693 MsG0180004475.01.T01:intron 55.0%
TTAGTTGCAGCCTTAGCGGC+TGG + Chr1:78622687-78622706 None:intergenic 55.0%
! AGTTTAGGTGGGTTCGGCTC+CGG - Chr1:78624659-78624678 MsG0180004475.01.T01:intron 55.0%
! CTGCTCCTTTGGCTCAGACA+TGG - Chr1:78625411-78625430 MsG0180004475.01.T01:intron 55.0%
! GCCAACGTGTGTTGGTACAC+CGG - Chr1:78624829-78624848 MsG0180004475.01.T01:intron 55.0%
! TTGCTGGCGGGGTTGCTTTA+AGG - Chr1:78626895-78626914 MsG0180004475.01.T01:intron 55.0%
!! CCAACACACGTTGGCTCAGT+TGG + Chr1:78624824-78624843 None:intergenic 55.0%
!! GATGTGAGGGCAGTGTTGGT+GGG + Chr1:78624749-78624768 None:intergenic 55.0%
!! GGCCCAAAGGGCACTTATAG+AGG - Chr1:78624710-78624729 MsG0180004475.01.T01:intron 55.0%
!! TTAGGCTTCGCCGCTGCTTT+TGG + Chr1:78622753-78622772 None:intergenic 55.0%
ACGGGCCACTTCCTTGCAGA+AGG + Chr1:78624795-78624814 None:intergenic 60.0%
ACTGCCCTCACATCGGCAGA+GGG - Chr1:78624755-78624774 MsG0180004475.01.T01:intron 60.0%
ATTCCAGCCGTGCGTTGCAC+GGG + Chr1:78623320-78623339 None:intergenic 60.0%
CGATTCCCTCTGCCGATGTG+AGG + Chr1:78624763-78624782 None:intergenic 60.0%
CTCTCTTGCTTACGACGCGG+TGG - Chr1:78630371-78630390 MsG0180004475.01.T01:CDS 60.0%
CTTGCTTACGACGCGGTGGT+TGG - Chr1:78630375-78630394 MsG0180004475.01.T01:CDS 60.0%
CTTGGGCTTGAGCTTGGGCT+TGG + Chr1:78622262-78622281 None:intergenic 60.0%
GCGGTAGAGGGAGAGGAGAA+GGG + Chr1:78625138-78625157 None:intergenic 60.0%
GGCGAAAACTGCTCCGGTGA+AGG - Chr1:78622620-78622639 MsG0180004475.01.T01:intron 60.0%
GGCTTCTGGCAAGCTCGTGA+AGG - Chr1:78622566-78622585 MsG0180004475.01.T01:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG + Chr1:78629636-78629655 None:intergenic 60.0%
GTACGAACCCGTGCAACGCA+CGG - Chr1:78623310-78623329 MsG0180004475.01.T01:intron 60.0%
GTGGGGAAAAGAGTTGCCGG+CGG + Chr1:78625160-78625179 None:intergenic 60.0%
TGCCGATGTGAGGGCAGTGT+TGG + Chr1:78624753-78624772 None:intergenic 60.0%
TGCTGTGCACCCTCAGATCC+AGG + Chr1:78630232-78630251 None:intergenic 60.0%
! CGATGTGAGGGCAGTGTTGG+TGG + Chr1:78624750-78624769 None:intergenic 60.0%
! CGCTGCCGGAGCGATTTTGA+AGG + Chr1:78622601-78622620 None:intergenic 60.0%
! CTTGGGCTTGGTCTGAGCAG+CGG + Chr1:78622250-78622269 None:intergenic 60.0%
!!! CGCCGCTGCTTTTGGCTTTG+CGG + Chr1:78622745-78622764 None:intergenic 60.0%
CACTGCCCTCACATCGGCAG+AGG - Chr1:78624754-78624773 MsG0180004475.01.T01:intron 65.0%
CCCACAATCACCGCCGCGAT+CGG - Chr1:78625175-78625194 MsG0180004475.01.T01:intron 65.0%
CCGATCGCGGCGGTGATTGT+GGG + Chr1:78625178-78625197 None:intergenic 65.0%
CGATCGCGGCGGTGATTGTG+GGG + Chr1:78625177-78625196 None:intergenic 65.0%
GGAAAGAGGAGAGAGGCCGC+GGG + Chr1:78625091-78625110 None:intergenic 65.0%
GGAGCAGTAGCGGCCTTCAC+CGG + Chr1:78622636-78622655 None:intergenic 65.0%
GGCAGCGGCGAAAACTGCTC+CGG - Chr1:78622614-78622633 MsG0180004475.01.T01:intron 65.0%
GGCGGTAGAGGGAGAGGAGA+AGG + Chr1:78625139-78625158 None:intergenic 65.0%
GGGAAAAGAGTTGCCGGCGG+CGG + Chr1:78625157-78625176 None:intergenic 65.0%
GGGAAAGAGGAGAGAGGCCG+CGG + Chr1:78625092-78625111 None:intergenic 65.0%
TAAGTGCCCTTTGGGCCCGG+AGG + Chr1:78624707-78624726 None:intergenic 65.0%
TCCGGTCACCACCAGGGTCA+GGG - Chr1:78624677-78624696 MsG0180004475.01.T01:intron 65.0%
TGCCCAAACGTGGCCGATCG+CGG + Chr1:78625191-78625210 None:intergenic 65.0%
TTCGGCTCCGGTCACCACCA+GGG - Chr1:78624671-78624690 MsG0180004475.01.T01:intron 65.0%
TTGGTCTGAGCAGCGGCGGT+GGG + Chr1:78622243-78622262 None:intergenic 65.0%
! GGAGCAGTTTTCGCCGCTGC+CGG + Chr1:78622615-78622634 None:intergenic 65.0%
AGAGTTGCCGGCGGCGGTAG+AGG + Chr1:78625151-78625170 None:intergenic 70.0%
AGCAGCGGCGGTGGGAGACA+TGG + Chr1:78622235-78622254 None:intergenic 70.0%
CCAAACGTGGCCGATCGCGG+CGG + Chr1:78625188-78625207 None:intergenic 70.0%
CGCCGCGATCGGCCACGTTT+GGG - Chr1:78625186-78625205 MsG0180004475.01.T01:intron 70.0%
CTCCGGTCACCACCAGGGTC+AGG - Chr1:78624676-78624695 MsG0180004475.01.T01:intron 70.0%
CTTGGTCTGAGCAGCGGCGG+TGG + Chr1:78622244-78622263 None:intergenic 70.0%
GAACCCGTGCAACGCACGGC+TGG - Chr1:78623314-78623333 MsG0180004475.01.T01:intron 70.0%
GAGTTGCCGGCGGCGGTAGA+GGG + Chr1:78625150-78625169 None:intergenic 70.0%
GCCGATCGCGGCGGTGATTG+TGG + Chr1:78625179-78625198 None:intergenic 70.0%
GTTCGGCTCCGGTCACCACC+AGG - Chr1:78624670-78624689 MsG0180004475.01.T01:intron 70.0%
TCCTCTCCCTCTACCGCCGC+CGG - Chr1:78625141-78625160 MsG0180004475.01.T01:intron 70.0%
! ACGCGGTGGTTGGCCGTCCA+AGG - Chr1:78630385-78630404 MsG0180004475.01.T01:CDS 70.0%
! CGGTGGTTGGCCGTCCAAGG+TGG - Chr1:78630388-78630407 MsG0180004475.01.T01:CDS 70.0%
! GCCCTGACCCTGGTGGTGAC+CGG + Chr1:78624681-78624700 None:intergenic 70.0%
! GGGCTTGGTCTGAGCAGCGG+CGG + Chr1:78622247-78622266 None:intergenic 70.0%
CAGGGTCAGGGCACGCCTCC+GGG - Chr1:78624689-78624708 MsG0180004475.01.T01:intron 75.0%
CCAGGGTCAGGGCACGCCTC+CGG - Chr1:78624688-78624707 MsG0180004475.01.T01:intron 75.0%
CCGCCGCGATCGGCCACGTT+TGG - Chr1:78625185-78625204 MsG0180004475.01.T01:intron 75.0%
GAGGCGTGCCCTGACCCTGG+TGG + Chr1:78624688-78624707 None:intergenic 75.0%
GGCACGCCTCCGGGCCCAAA+GGG - Chr1:78624698-78624717 MsG0180004475.01.T01:intron 75.0%
GGCGGCGACGCCACCTTGGA+CGG + Chr1:78630401-78630420 None:intergenic 75.0%
! GCCGGCGGCGGTAGAGGGAG+AGG + Chr1:78625145-78625164 None:intergenic 80.0%
! GGGCACGCCTCCGGGCCCAA+AGG - Chr1:78624697-78624716 MsG0180004475.01.T01:intron 80.0%
! TGGCGGCGGCGACGCCACCT+TGG + Chr1:78630405-78630424 None:intergenic 80.0%
!! CCGGAGGCGTGCCCTGACCC+TGG + Chr1:78624691-78624710 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78622133 78630901 78622133 ID=MsG0180004475.01;Name=MsG0180004475.01
Chr1 mRNA 78622133 78630901 78622133 ID=MsG0180004475.01.T01;Parent=MsG0180004475.01;Name=MsG0180004475.01.T01;_AED=0.53;_eAED=0.63;_QI=101|0.16|0.14|0.85|1|1|7|0|327
Chr1 exon 78622133 78622192 78622133 ID=MsG0180004475.01.T01:exon:12955;Parent=MsG0180004475.01.T01
Chr1 exon 78623135 78623168 78623135 ID=MsG0180004475.01.T01:exon:12954;Parent=MsG0180004475.01.T01
Chr1 exon 78627561 78627675 78627561 ID=MsG0180004475.01.T01:exon:12953;Parent=MsG0180004475.01.T01
Chr1 exon 78628192 78628368 78628192 ID=MsG0180004475.01.T01:exon:12952;Parent=MsG0180004475.01.T01
Chr1 exon 78629142 78629179 78629142 ID=MsG0180004475.01.T01:exon:12951;Parent=MsG0180004475.01.T01
Chr1 exon 78630145 78630608 78630145 ID=MsG0180004475.01.T01:exon:12950;Parent=MsG0180004475.01.T01
Chr1 exon 78630705 78630901 78630705 ID=MsG0180004475.01.T01:exon:12949;Parent=MsG0180004475.01.T01
Chr1 five_prime_UTR 78630801 78630901 78630801 ID=MsG0180004475.01.T01:five_prime_utr;Parent=MsG0180004475.01.T01
Chr1 CDS 78630705 78630800 78630705 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Chr1 CDS 78630145 78630608 78630145 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Chr1 CDS 78629142 78629179 78629142 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Chr1 CDS 78628192 78628368 78628192 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Chr1 CDS 78627561 78627675 78627561 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Chr1 CDS 78623135 78623168 78623135 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Chr1 CDS 78622133 78622192 78622133 ID=MsG0180004475.01.T01:cds;Parent=MsG0180004475.01.T01
Gene Sequence

>MsG0180004475.01.T01

ATGTCTCCCACCGCCGCTGCTCAGACCAAGCCCAAGCTCAAGCCCAAGAAAACCGCTGCAGCAAAGAAGCCTCTCTCTCATCCTACCTACGCTGAGATGATAACTGAAGCAATTGTGAGTTTGAAAGAAAGAACTGGTTCAAGCCAACACGCGATAACGAAATTCATCGAAGAGAAGCATAAGGATTTATCTCCAACGTTCCGCAAACTCATTCTTCTTCATCTGAAGAAATCTGTGGCTTCTGGCAAGCTCGTGAAGGTGAAAAACTCCTTCAAAATCGCTCCGGCAGCGGCGAAAACTGCTCCGGTGAAGGCCGCTACTGCTCCTGCTAAGAAGGCTAAGGCTGTTACGAAGCCAGCCGCTAAGGCTGCAACTAAGCCGAAGGCGAAAGCTGCTGTGAAGCCGAAAGCTGCCGCAAAGCCAAAAGCAGCGGCGAAGCCTAAAGCTGTTGTGAAGCCGAAAGCGAAGAGTGTTAAGGGTACGCCTGTGAAGAAAGCGGCGAAGAAGGTGGTTGCGAAGAAGCCGAAGAGTGTTAAGACTCCGGTGAAGAAAGCTAAGAAGCATGTTAAGAACGTTATTAAAAGGTCCACCGAAAAAAGTGGGTTCGGCTCCGGTCACCACCAGGGTCAGGGCACGCCTCCGGGCCCAAAGGGCACTTATAGAGGTGCTTACAGATCACCCACCAACACTGCCCTCACATCGGCAGAGGGAATCGAACACACAACCTTCTGCAAGGAAGTGGCCCGTTCCTTACCAACTGAGCCAACGTGTGTTGTTACCCTCACCTTGGAAGGATCAAGGAGACCAGAGATCCAGATGTTTCGAATCTGCTCCTTTGGCTCAGACATGGTTGCTGCTGCTGCCGTGTCGTTTCTTCAACTTCTTCTACGACATCCGGTTAACTCGAATAAAAAGGTTAAATTGGATGAAGATTTCTTTGCTGATTATACTGAGGCTCATCAAAAGCTCTTTGAACTTGGGTAA
Protein sequence

>MsG0180004475.01.T01

MSPTAAAQTKPKLKPKKTAAAKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGKLVKVKNSFKIAPAAAKTAPVKAATAPAKKAKAVTKPAAKAATKPKAKAAVKPKAAAKPKAAAKPKAVVKPKAKSVKGTPVKKAAKKVVAKKPKSVKTPVKKAKKHVKNVIKRSTEKSGFGSGHHQGQGTPPGPKGTYRGAYRSPTNTALTSAEGIEHTTFCKEVARSLPTEPTCVVTLTLEGSRRPEIQMFRICSFGSDMVAAAAVSFLQLLLRHPVNSNKKVKLDEDFFADYTEAHQKLFELG*