Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014681.01.T01 | KAG2660576.1 | 100 | 103 | 0 | 0 | 1 | 103 | 28 | 130 | 9.14E-66 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014681.01.T01 | P0CG89 | 100 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.05E-67 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014681.01.T01 | A0A453MZH1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 31 | 133 | 3.54e-66 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048113.01 | MsG0380014681.01 | 0.813799 | 2.131484e-51 | 1.405642e-48 |
| MsG0080048856.01 | MsG0380014681.01 | 0.846616 | 1.941988e-59 | 3.361897e-56 |
| MsG0080049032.01 | MsG0380014681.01 | 0.810725 | 9.993712e-51 | 6.070511e-48 |
| MsG0180000145.01 | MsG0380014681.01 | 0.810555 | 1.087626e-50 | 6.576415e-48 |
| MsG0180000209.01 | MsG0380014681.01 | 0.801400 | 9.167823e-49 | 4.373834e-46 |
| MsG0180000353.01 | MsG0380014681.01 | 0.814180 | 1.757125e-51 | 1.170773e-48 |
| MsG0180000470.01 | MsG0380014681.01 | 0.800584 | 1.346075e-48 | 6.290915e-46 |
| MsG0180002895.01 | MsG0380014681.01 | 0.803502 | 3.380355e-49 | 1.701596e-46 |
| MsG0180003572.01 | MsG0380014681.01 | 0.801650 | 8.144706e-49 | 3.910423e-46 |
| MsG0180003669.01 | MsG0380014681.01 | 0.838037 | 3.647450e-57 | 4.826348e-54 |
| MsG0180003671.01 | MsG0380014681.01 | 0.833309 | 5.741576e-56 | 6.586927e-53 |
| MsG0180003920.01 | MsG0380014681.01 | 0.847124 | 1.409828e-59 | 2.481090e-56 |
| MsG0180003943.01 | MsG0380014681.01 | 0.814882 | 1.228224e-51 | 8.340336e-49 |
| MsG0180004099.01 | MsG0380014681.01 | 0.811666 | 6.246235e-51 | 3.889529e-48 |
| MsG0180004389.01 | MsG0380014681.01 | 0.800882 | 1.170079e-48 | 5.510145e-46 |
| MsG0180004970.01 | MsG0380014681.01 | 0.805537 | 1.272751e-49 | 6.750455e-47 |
| MsG0180005250.01 | MsG0380014681.01 | 0.816561 | 5.191031e-52 | 3.690598e-49 |
| MsG0180005575.01 | MsG0380014681.01 | 0.840512 | 8.316981e-58 | 1.187455e-54 |
| MsG0180005993.01 | MsG0380014681.01 | 0.824226 | 9.052222e-54 | 7.969651e-51 |
| MsG0280006299.01 | MsG0380014681.01 | 0.811591 | 6.484022e-51 | 4.029763e-48 |
| MsG0280010698.01 | MsG0380014681.01 | 0.808541 | 2.944362e-50 | 1.688049e-47 |
| MsG0280010778.01 | MsG0380014681.01 | 0.800796 | 1.217937e-48 | 5.722753e-46 |
| MsG0280010980.01 | MsG0380014681.01 | 0.887176 | 1.794903e-72 | 1.320690e-68 |
| MsG0280011003.01 | MsG0380014681.01 | 0.898659 | 4.272074e-77 | 5.098347e-73 |
| MsG0280011013.01 | MsG0380014681.01 | 0.895709 | 7.404087e-76 | 7.767390e-72 |
| MsG0280011014.01 | MsG0380014681.01 | 0.892528 | 1.461063e-74 | 1.341225e-70 |
| MsG0280011156.01 | MsG0380014681.01 | 0.815317 | 9.837475e-52 | 6.759846e-49 |
| MsG0280011282.01 | MsG0380014681.01 | 0.821432 | 4.049399e-53 | 3.293915e-50 |
| MsG0280011388.01 | MsG0380014681.01 | 0.800208 | 1.605038e-48 | 7.429951e-46 |
| MsG0280011472.01 | MsG0380014681.01 | 0.801197 | 1.008734e-48 | 4.788135e-46 |
| MsG0380011501.01 | MsG0380014681.01 | 0.807848 | 4.135564e-50 | 2.328112e-47 |
| MsG0380011755.01 | MsG0380014681.01 | 0.801721 | 7.877955e-49 | 3.789092e-46 |
| MsG0380012460.01 | MsG0380014681.01 | 0.823968 | 1.040801e-53 | 9.097063e-51 |
| MsG0380012471.01 | MsG0380014681.01 | 0.836062 | 1.166296e-56 | 1.453258e-53 |
| MsG0380013475.01 | MsG0380014681.01 | 0.809808 | 1.575552e-50 | 9.341856e-48 |
| MsG0380013834.01 | MsG0380014681.01 | 0.813470 | 2.517920e-51 | 1.645837e-48 |
| MsG0380014173.01 | MsG0380014681.01 | 0.804836 | 1.783972e-49 | 9.293839e-47 |
| MsG0380014248.01 | MsG0380014681.01 | 0.837979 | 3.774314e-57 | 4.985510e-54 |
| MsG0380014289.01 | MsG0380014681.01 | 0.865120 | 7.436956e-65 | 2.392360e-61 |
| MsG0380014387.01 | MsG0380014681.01 | 0.808114 | 3.630925e-50 | 2.058445e-47 |
| MsG0380014647.01 | MsG0380014681.01 | 0.810503 | 1.116131e-50 | 6.739401e-48 |
| MsG0380014681.01 | MsG0380014703.01 | 0.901266 | 3.187311e-78 | 4.273118e-74 |
| MsG0380014681.01 | MsG0380015168.01 | 0.809211 | 2.116655e-50 | 1.235278e-47 |
| MsG0380014681.01 | MsG0380017040.01 | 0.802420 | 5.658368e-49 | 2.770620e-46 |
| MsG0380014681.01 | MsG0380017049.01 | 0.806315 | 8.730071e-50 | 4.723599e-47 |
| MsG0380014681.01 | MsG0380017351.01 | 0.836314 | 1.006430e-56 | 1.263797e-53 |
| MsG0380014681.01 | MsG0480018163.01 | 0.827916 | 1.200747e-54 | 1.175459e-51 |
| MsG0380014681.01 | MsG0480018894.01 | 0.809149 | 2.182165e-50 | 1.271397e-47 |
| MsG0380014681.01 | MsG0480019416.01 | 0.804504 | 2.092466e-49 | 1.080676e-46 |
| MsG0380014681.01 | MsG0480019710.01 | 0.825064 | 5.747114e-54 | 5.182996e-51 |
| MsG0380014681.01 | MsG0480019922.01 | 0.805116 | 1.558860e-49 | 8.179382e-47 |
| MsG0380014681.01 | MsG0480020447.01 | 0.807594 | 4.684688e-50 | 2.619702e-47 |
| MsG0380014681.01 | MsG0480020879.01 | 0.875507 | 2.917972e-68 | 1.365745e-64 |
| MsG0380014681.01 | MsG0480020907.01 | 0.801784 | 7.647102e-49 | 3.684005e-46 |
| MsG0380014681.01 | MsG0480021452.01 | 0.840127 | 1.048247e-57 | 1.478933e-54 |
| MsG0380014681.01 | MsG0480021464.01 | 0.820642 | 6.158605e-53 | 4.900193e-50 |
| MsG0380014681.01 | MsG0480021465.01 | 0.852699 | 3.889801e-61 | 8.196545e-58 |
| MsG0380014681.01 | MsG0480022164.01 | 0.842447 | 2.572012e-58 | 3.901267e-55 |
| MsG0380014681.01 | MsG0480022549.01 | 0.806289 | 8.841730e-50 | 4.780951e-47 |
| MsG0380014681.01 | MsG0480022696.01 | 0.814809 | 1.275007e-51 | 8.641440e-49 |
| MsG0380014681.01 | MsG0480022795.01 | 0.802871 | 4.567491e-49 | 2.262199e-46 |
| MsG0380014681.01 | MsG0480023015.01 | 0.802723 | 4.900090e-49 | 2.417905e-46 |
| MsG0380014681.01 | MsG0480023163.01 | 0.800185 | 1.622883e-48 | 7.508110e-46 |
| MsG0380014681.01 | MsG0480023463.01 | 0.802637 | 5.105459e-49 | 2.513544e-46 |
| MsG0380014681.01 | MsG0480023600.01 | 0.817075 | 3.979811e-52 | 2.869630e-49 |
| MsG0380014681.01 | MsG0580024197.01 | 0.821942 | 3.088067e-53 | 2.548290e-50 |
| MsG0380014681.01 | MsG0580024489.01 | 0.806379 | 8.464615e-50 | 4.587412e-47 |
| MsG0380014681.01 | MsG0580025587.01 | 0.802427 | 5.640011e-49 | 2.762115e-46 |
| MsG0380014681.01 | MsG0580027650.01 | 0.844808 | 6.011403e-59 | 9.819283e-56 |
| MsG0380014681.01 | MsG0580027925.01 | 0.827570 | 1.454250e-54 | 1.409203e-51 |
| MsG0380014681.01 | MsG0580028394.01 | 0.811478 | 6.863706e-51 | 4.253263e-48 |
| MsG0380014681.01 | MsG0580029640.01 | 0.800505 | 1.396765e-48 | 6.514627e-46 |
| MsG0380014681.01 | MsG0580029729.01 | 0.810873 | 9.283631e-51 | 5.661610e-48 |
| MsG0380014681.01 | MsG0680031214.01 | 0.830580 | 2.710740e-55 | 2.867682e-52 |
| MsG0380014681.01 | MsG0680031506.01 | 0.851126 | 1.087390e-60 | 2.178764e-57 |
| MsG0380014681.01 | MsG0680031507.01 | 0.809069 | 2.270669e-50 | 1.320083e-47 |
| MsG0380014681.01 | MsG0680031628.01 | 0.806772 | 6.993550e-50 | 3.828506e-47 |
| MsG0380014681.01 | MsG0680034853.01 | 0.811706 | 6.121684e-51 | 3.816170e-48 |
| MsG0380014681.01 | MsG0680035346.01 | 0.825214 | 5.294455e-54 | 4.795450e-51 |
| MsG0380014681.01 | MsG0680035475.01 | 0.816940 | 4.267103e-52 | 3.065664e-49 |
| MsG0380014681.01 | MsG0680035658.01 | 0.817010 | 4.116722e-52 | 2.963158e-49 |
| MsG0380014681.01 | MsG0780035979.01 | 0.800458 | 1.427789e-48 | 6.651368e-46 |
| MsG0380014681.01 | MsG0780036477.01 | 0.839180 | 1.848721e-57 | 2.532790e-54 |
| MsG0380014681.01 | MsG0780036719.01 | 0.807775 | 4.286145e-50 | 2.408327e-47 |
| MsG0380014681.01 | MsG0780037240.01 | 0.862671 | 4.297755e-64 | 1.268818e-60 |
| MsG0380014681.01 | MsG0780037604.01 | 0.814056 | 1.870937e-51 | 1.242426e-48 |
| MsG0380014681.01 | MsG0780038401.01 | 0.817968 | 2.504095e-52 | 1.850208e-49 |
| MsG0380014681.01 | MsG0780038424.01 | 0.820256 | 7.550100e-53 | 5.943996e-50 |
| MsG0380014681.01 | MsG0780039137.01 | 0.824866 | 6.400822e-54 | 5.740190e-51 |
| MsG0380014681.01 | MsG0780039443.01 | 0.805042 | 1.615385e-49 | 8.459840e-47 |
| MsG0380014681.01 | MsG0780040057.01 | 0.808003 | 3.833741e-50 | 2.167122e-47 |
| MsG0380014681.01 | MsG0780040841.01 | 0.892235 | 1.914110e-74 | 1.734557e-70 |
| MsG0380014681.01 | MsG0780040926.01 | 0.800086 | 1.699474e-48 | 7.842889e-46 |
| MsG0380014681.01 | MsG0780041535.01 | 0.850623 | 1.506117e-60 | 2.968143e-57 |
| MsG0380014681.01 | MsG0780041559.01 | 0.807370 | 5.226290e-50 | 2.905730e-47 |
| MsG0380014681.01 | MsG0780041667.01 | 0.800319 | 1.523807e-48 | 7.074062e-46 |
| MsG0380014681.01 | MsG0880041860.01 | 0.819790 | 9.651252e-53 | 7.500676e-50 |
| MsG0380014681.01 | MsG0880042779.01 | 0.826346 | 2.853404e-54 | 2.669038e-51 |
| MsG0380014681.01 | MsG0880043034.01 | 0.808416 | 3.131488e-50 | 1.789479e-47 |
| MsG0380014681.01 | MsG0880043479.01 | 0.810722 | 1.000811e-50 | 6.078840e-48 |
| MsG0380014681.01 | MsG0880043491.01 | 0.827994 | 1.149905e-54 | 1.128317e-51 |
| MsG0380014681.01 | MsG0880043592.01 | 0.854278 | 1.369093e-61 | 3.041916e-58 |
| MsG0380014681.01 | MsG0880044574.01 | 0.802757 | 4.821279e-49 | 2.381027e-46 |
| MsG0380014681.01 | MsG0880044782.01 | 0.825839 | 3.765937e-54 | 3.472232e-51 |
| MsG0380014681.01 | MsG0880044881.01 | 0.826127 | 3.217476e-54 | 2.990720e-51 |
| MsG0380014681.01 | MsG0880045145.01 | 0.881979 | 1.528885e-70 | 9.147843e-67 |
| MsG0380014681.01 | MsG0880045653.01 | 0.805807 | 1.117069e-49 | 5.966253e-47 |
| MsG0380014681.01 | MsG0880045736.01 | 0.803582 | 3.253766e-49 | 1.641284e-46 |
| MsG0380014681.01 | MsG0880045937.01 | 0.801382 | 9.244378e-49 | 4.408541e-46 |
| MsG0380014681.01 | MsG0880045965.01 | 0.805916 | 1.059379e-49 | 5.674027e-47 |
| MsG0380014681.01 | MsG0880046012.01 | 0.836734 | 7.866663e-57 | 1.000240e-53 |
| MsG0380014681.01 | MsG0880047470.01 | 0.824758 | 6.784982e-54 | 6.066144e-51 |
| MsG0380014681.01 | MsG0880047472.01 | 0.881031 | 3.364386e-70 | 1.939967e-66 |
| MsG0380014681.01 | MsG0880047473.01 | 0.869202 | 3.695717e-66 | 1.375155e-62 |
| MsG0280007452.01 | MsG0380014681.01 | 0.822681 | 2.080253e-53 | 1.753275e-50 |
| MsG0280007527.01 | MsG0380014681.01 | 0.802853 | 4.607008e-49 | 2.280753e-46 |
| MsG0280007955.01 | MsG0380014681.01 | 0.808234 | 3.422720e-50 | 1.946638e-47 |
| MsG0280008457.01 | MsG0380014681.01 | 0.804157 | 2.472118e-49 | 1.265458e-46 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014681.01.T01 | MTR_7g029510 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_7g099610 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_5g063620 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_4g061827 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_4g061920 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g462400 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g054380 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g462730 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g462510 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g070920 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g061440 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_3g462410 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_2g096100 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_8g038460 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.97e-68 | 199 |
| MsG0380014681.01.T01 | MTR_4g128150 | 100.000 | 102 | 0 | 0 | 1 | 102 | 1 | 102 | 1.74e-66 | 204 |
| MsG0380014681.01.T01 | MTR_7g029520 | 84.000 | 50 | 8 | 0 | 27 | 76 | 1 | 50 | 2.23e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014681.01.T01 | AT5G59970 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT5G59690 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT5G59970 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT3G46320 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT3G45930 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT3G53730 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT2G28740 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT1G07660 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT1G07820 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT1G07820 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| MsG0380014681.01.T01 | AT1G07660 | 83.495 | 103 | 0 | 1 | 1 | 103 | 1 | 86 | 4.52e-51 | 155 |
Find 34 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTGTCTTGAAGATCTTCT+TGG | 0.405705 | 3:-58347364 | MsG0380014681.01.T01:CDS |
| AGACAGGGAAGAACTCTCTA+TGG | 0.431453 | 3:-58347255 | MsG0380014681.01.T01:CDS |
| GGAAGAACTCTCTATGGTTT+CGG | 0.433663 | 3:-58347249 | MsG0380014681.01.T01:CDS |
| AAAATGTCAGGTCGTGGAAA+GGG | 0.434071 | 3:-58347534 | MsG0380014681.01.T01:CDS |
| CAATCGACGAATAGCAGGTT+TGG | 0.439411 | 3:+58347440 | None:intergenic |
| TGTCTATGCTTTGAAGAGAC+AGG | 0.458633 | 3:-58347271 | MsG0380014681.01.T01:CDS |
| GGTAAGGGTCTGGGAAAGGG+AGG | 0.476615 | 3:-58347510 | MsG0380014681.01.T01:CDS |
| CTTGCCAATCGACGAATAGC+AGG | 0.487494 | 3:+58347435 | None:intergenic |
| AGGGAGGTGCAAAGAGGCAT+AGG | 0.498985 | 3:-58347494 | MsG0380014681.01.T01:CDS |
| CTCCCGAAAATGTCAGGTCG+TGG | 0.510898 | 3:-58347540 | None:intergenic |
| GAAGATCTTCAAGACACCTC+TGG | 0.510902 | 3:+58347368 | None:intergenic |
| GGTTCTTCGTGATAACATCC+AGG | 0.535931 | 3:-58347469 | MsG0380014681.01.T01:CDS |
| AAATGTCAGGTCGTGGAAAG+GGG | 0.537019 | 3:-58347533 | MsG0380014681.01.T01:CDS |
| CAAACCTGCTATTCGTCGAT+TGG | 0.553041 | 3:-58347439 | MsG0380014681.01.T01:CDS |
| GAGGAAGACGGTGACAGCCA+TGG | 0.561434 | 3:-58347298 | MsG0380014681.01.T01:CDS |
| CGTCGATTGGCAAGAAGAGG+CGG | 0.578876 | 3:-58347426 | MsG0380014681.01.T01:CDS |
| GTCTATGCTTTGAAGAGACA+GGG | 0.584038 | 3:-58347270 | MsG0380014681.01.T01:CDS |
| AATGTCAGGTCGTGGAAAGG+GGG | 0.584231 | 3:-58347532 | MsG0380014681.01.T01:CDS |
| AGGTGCAAAGAGGCATAGGA+AGG | 0.586086 | 3:-58347490 | MsG0380014681.01.T01:CDS |
| TGACATACACTGAGCACGCA+AGG | 0.587222 | 3:-58347320 | MsG0380014681.01.T01:CDS |
| GAAAATGTCAGGTCGTGGAA+AGG | 0.589881 | 3:-58347535 | None:intergenic |
| AATCAGTGGATTGATCTATG+AGG | 0.593356 | 3:-58347394 | MsG0380014681.01.T01:CDS |
| TAGCAGGTTTGGTGATACCC+TGG | 0.596796 | 3:+58347451 | None:intergenic |
| ATGTCAGGTCGTGGAAAGGG+GGG | 0.615792 | 3:-58347531 | MsG0380014681.01.T01:CDS |
| ATTCGTCGATTGGCAAGAAG+AGG | 0.622105 | 3:-58347429 | MsG0380014681.01.T01:CDS |
| AGAACTCTCTATGGTTTCGG+AGG | 0.626708 | 3:-58347246 | MsG0380014681.01.T01:CDS |
| CAAAGCATAGACAACATCCA+TGG | 0.629842 | 3:+58347281 | None:intergenic |
| GGCGGTGTGAAAAGAATCAG+TGG | 0.634187 | 3:-58347408 | MsG0380014681.01.T01:CDS |
| CAGTGTATGTCACAGCATCA+CGG | 0.646580 | 3:+58347331 | None:intergenic |
| GTTCTTCGTGATAACATCCA+GGG | 0.651580 | 3:-58347468 | MsG0380014681.01.T01:CDS |
| TGAGCACGCAAGGAGGAAGA+CGG | 0.652638 | 3:-58347310 | MsG0380014681.01.T01:CDS |
| TGGGAAAGGGAGGTGCAAAG+AGG | 0.663580 | 3:-58347500 | MsG0380014681.01.T01:CDS |
| TTGATCTATGAGGAAACCAG+AGG | 0.700822 | 3:-58347384 | MsG0380014681.01.T01:CDS |
| CATACACTGAGCACGCAAGG+AGG | 0.730442 | 3:-58347317 | MsG0380014681.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAGTGGATTGATCTATG+AGG | - | Chr3:58347379-58347398 | MsG0380014681.01.T01:CDS | 35.0% |
| AGGTGTCTTGAAGATCTTCT+TGG | - | Chr3:58347409-58347428 | MsG0380014681.01.T01:CDS | 40.0% | |
| CAAAGCATAGACAACATCCA+TGG | + | Chr3:58347495-58347514 | None:intergenic | 40.0% | |
| GGAAGAACTCTCTATGGTTT+CGG | - | Chr3:58347524-58347543 | MsG0380014681.01.T01:CDS | 40.0% | |
| GTTCTTCGTGATAACATCCA+GGG | - | Chr3:58347305-58347324 | MsG0380014681.01.T01:CDS | 40.0% | |
| TTGATCTATGAGGAAACCAG+AGG | - | Chr3:58347389-58347408 | MsG0380014681.01.T01:CDS | 40.0% | |
| !! | GTCTATGCTTTGAAGAGACA+GGG | - | Chr3:58347503-58347522 | MsG0380014681.01.T01:CDS | 40.0% |
| !! | TGTCTATGCTTTGAAGAGAC+AGG | - | Chr3:58347502-58347521 | MsG0380014681.01.T01:CDS | 40.0% |
| AGAACTCTCTATGGTTTCGG+AGG | - | Chr3:58347527-58347546 | MsG0380014681.01.T01:CDS | 45.0% | |
| AGACAGGGAAGAACTCTCTA+TGG | - | Chr3:58347518-58347537 | MsG0380014681.01.T01:CDS | 45.0% | |
| CAAACCTGCTATTCGTCGAT+TGG | - | Chr3:58347334-58347353 | MsG0380014681.01.T01:CDS | 45.0% | |
| CAATCGACGAATAGCAGGTT+TGG | + | Chr3:58347336-58347355 | None:intergenic | 45.0% | |
| CAGTGTATGTCACAGCATCA+CGG | + | Chr3:58347445-58347464 | None:intergenic | 45.0% | |
| GAAGATCTTCAAGACACCTC+TGG | + | Chr3:58347408-58347427 | None:intergenic | 45.0% | |
| GGTTCTTCGTGATAACATCC+AGG | - | Chr3:58347304-58347323 | MsG0380014681.01.T01:CDS | 45.0% | |
| ! | ATTCGTCGATTGGCAAGAAG+AGG | - | Chr3:58347344-58347363 | MsG0380014681.01.T01:CDS | 45.0% |
| CTTGCCAATCGACGAATAGC+AGG | + | Chr3:58347341-58347360 | None:intergenic | 50.0% | |
| GGCGGTGTGAAAAGAATCAG+TGG | - | Chr3:58347365-58347384 | MsG0380014681.01.T01:CDS | 50.0% | |
| TGACATACACTGAGCACGCA+AGG | - | Chr3:58347453-58347472 | MsG0380014681.01.T01:CDS | 50.0% | |
| ! | AGGTGCAAAGAGGCATAGGA+AGG | - | Chr3:58347283-58347302 | MsG0380014681.01.T01:CDS | 50.0% |
| !! | TAGCAGGTTTGGTGATACCC+TGG | + | Chr3:58347325-58347344 | None:intergenic | 50.0% |
| ATGTCAGGTCGTGGAAAGGG+GGG | - | Chr3:58347242-58347261 | MsG0380014681.01.T01:CDS | 55.0% | |
| CATACACTGAGCACGCAAGG+AGG | - | Chr3:58347456-58347475 | MsG0380014681.01.T01:CDS | 55.0% | |
| TGAGCACGCAAGGAGGAAGA+CGG | - | Chr3:58347463-58347482 | MsG0380014681.01.T01:CDS | 55.0% | |
| ! | AGGGAGGTGCAAAGAGGCAT+AGG | - | Chr3:58347279-58347298 | MsG0380014681.01.T01:CDS | 55.0% |
| ! | CGTCGATTGGCAAGAAGAGG+CGG | - | Chr3:58347347-58347366 | MsG0380014681.01.T01:CDS | 55.0% |
| ! | TGGGAAAGGGAGGTGCAAAG+AGG | - | Chr3:58347273-58347292 | MsG0380014681.01.T01:CDS | 55.0% |
| AGGTCGTGGAAAGGGGGGTA+AGG | - | Chr3:58347247-58347266 | MsG0380014681.01.T01:CDS | 60.0% | |
| GAGGAAGACGGTGACAGCCA+TGG | - | Chr3:58347475-58347494 | MsG0380014681.01.T01:CDS | 60.0% | |
| GGAAAGGGGGGTAAGGGTCT+GGG | - | Chr3:58347254-58347273 | MsG0380014681.01.T01:CDS | 60.0% | |
| GGGGGTAAGGGTCTGGGAAA+GGG | - | Chr3:58347260-58347279 | MsG0380014681.01.T01:CDS | 60.0% | |
| GGTAAGGGTCTGGGAAAGGG+AGG | - | Chr3:58347263-58347282 | MsG0380014681.01.T01:CDS | 60.0% | |
| GGTCGTGGAAAGGGGGGTAA+GGG | - | Chr3:58347248-58347267 | MsG0380014681.01.T01:CDS | 60.0% | |
| TGGAAAGGGGGGTAAGGGTC+TGG | - | Chr3:58347253-58347272 | MsG0380014681.01.T01:CDS | 60.0% | |
| GGGGGGTAAGGGTCTGGGAA+AGG | - | Chr3:58347259-58347278 | MsG0380014681.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 58347242 | 58347553 | 58347242 | ID=MsG0380014681.01;Name=MsG0380014681.01 |
| Chr3 | mRNA | 58347242 | 58347553 | 58347242 | ID=MsG0380014681.01.T01;Parent=MsG0380014681.01;Name=MsG0380014681.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|103 |
| Chr3 | exon | 58347242 | 58347553 | 58347242 | ID=MsG0380014681.01.T01:exon:11310;Parent=MsG0380014681.01.T01 |
| Chr3 | CDS | 58347242 | 58347553 | 58347242 | ID=MsG0380014681.01.T01:cds;Parent=MsG0380014681.01.T01 |
| Gene Sequence |
| Protein sequence |
