AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029038.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029038.01.T01 MTR_5g080680 52.093 215 49 8 46 210 142 352 5.25e-44 152
MsG0580029038.01.T01 MTR_5g080680 89.130 46 5 0 1 46 39 84 2.00e-12 65.9
MsG0580029038.01.T01 MTR_3g068200 39.171 217 80 8 46 213 133 346 2.87e-30 115
MsG0580029038.01.T01 MTR_1g028300 62.264 53 20 0 141 193 285 337 8.71e-17 78.6
MsG0580029038.01.T01 MTR_4g125810 29.255 188 82 8 47 187 264 447 7.30e-14 70.5
MsG0580029038.01.T01 MTR_5g080680 89.130 46 5 0 1 46 39 84 1.20e-12 65.9
MsG0580029038.01.T01 MTR_5g009370 49.057 53 27 0 141 193 233 285 3.95e-12 64.7
MsG0580029038.01.T01 MTR_8g102550 62.500 48 18 0 138 185 293 340 5.92e-12 64.7
MsG0580029038.01.T01 MTR_3g104710 52.459 61 28 1 127 187 427 486 6.21e-12 64.7
MsG0580029038.01.T01 MTR_2g040500 27.317 205 77 6 47 183 278 478 3.24e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029038.01.T01 AT3G11410 74.545 55 14 0 138 192 294 348 1.40e-21 92.0
MsG0580029038.01.T01 AT1G07430 35.533 197 72 8 46 191 167 359 3.27e-21 91.3
MsG0580029038.01.T01 AT5G59220 60.870 69 27 0 138 206 294 362 2.96e-20 88.6
MsG0580029038.01.T01 AT2G29380 72.727 55 14 1 138 192 263 316 1.43e-18 83.2
MsG0580029038.01.T01 AT1G72770 68.085 47 15 0 141 187 402 448 9.40e-14 70.1
MsG0580029038.01.T01 AT1G72770 68.085 47 15 0 141 187 402 448 9.40e-14 70.1
MsG0580029038.01.T01 AT1G72770 68.085 47 15 0 141 187 402 448 9.40e-14 70.1
MsG0580029038.01.T01 AT5G57050 30.319 188 81 6 46 187 170 353 2.38e-13 68.6
MsG0580029038.01.T01 AT4G26080 31.148 183 84 5 46 187 182 363 2.82e-13 68.6
MsG0580029038.01.T01 AT5G57050 30.319 188 81 6 46 187 130 313 3.74e-13 68.2
MsG0580029038.01.T01 AT5G51760 55.357 56 25 0 138 193 274 329 6.62e-13 67.4
MsG0580029038.01.T01 AT5G51760 55.357 56 25 0 138 193 304 359 7.26e-13 67.4
MsG0580029038.01.T01 AT1G17550 56.140 57 24 1 127 183 389 444 2.95e-12 65.5
MsG0580029038.01.T01 AT1G17550 56.140 57 24 1 127 183 389 444 2.95e-12 65.5

Find 99 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAATTAATAATAGTAAT+AGG 0.207176 5:+90786237 MsG0580029038.01.T01:three_prime_UTR
GATCTAGCTTCTGTCGTTTC+CGG 0.236639 5:-90784575 None:intergenic
GGTGACTCCGCCGGGGTCTC+CGG 0.273090 5:+90786075 MsG0580029038.01.T01:CDS
GCTGAGGACGTGTGATCTAT+TGG 0.299076 5:+90785384 MsG0580029038.01.T01:CDS
TACTTGCGAGTGATGGCTTA+TGG 0.304795 5:+90785990 MsG0580029038.01.T01:CDS
TAGGGATTGATTAATGGAAT+TGG 0.330985 5:+90786256 MsG0580029038.01.T01:three_prime_UTR
TAGTAATAGGGATTGATTAA+TGG 0.332759 5:+90786250 MsG0580029038.01.T01:three_prime_UTR
TTGGCAAAGTGGGAGGAAAA+TGG 0.340528 5:+90786360 MsG0580029038.01.T01:three_prime_UTR
CGTATAAAGAAGACATATAT+TGG 0.345929 5:+90786555 MsG0580029038.01.T01:three_prime_UTR
CTTGAAGCCATATGTTATAT+CGG 0.354940 5:+90785919 MsG0580029038.01.T01:CDS
GAGGAATGGCAACGCCGTTC+CGG 0.355461 5:-90785219 None:intergenic
TTTCCCGCCACTTCACTTCC+CGG 0.360638 5:-90786094 None:intergenic
AACAATTAATAATAGTAATA+GGG 0.379877 5:+90786238 MsG0580029038.01.T01:three_prime_UTR
TCCTCTTTCCACCGATCATA+AGG 0.382314 5:+90785237 MsG0580029038.01.T01:CDS
AAGAAGACATATATTGGCTT+TGG 0.383889 5:+90786561 MsG0580029038.01.T01:three_prime_UTR
CTTATGACGTGCACTGTGTC+TGG 0.387925 5:+90786311 MsG0580029038.01.T01:three_prime_UTR
TGTATCTTGTGGGAAACAAT+TGG 0.400205 5:+90786460 MsG0580029038.01.T01:three_prime_UTR
GAGAGGACGGTGACTCCGCC+GGG 0.408202 5:+90786067 MsG0580029038.01.T01:CDS
GCGTGGTGGTTGTTGATTTG+AGG 0.416094 5:+90786196 MsG0580029038.01.T01:three_prime_UTR
CATTCTGGCGGTGGCGGTGG+TGG 0.416332 5:-90784612 None:intergenic
ATTCGCGAGCCGTTCTTTGC+CGG 0.418183 5:+90785200 MsG0580029038.01.T01:CDS
GGGAAGTGAAGTGGCGGGAA+AGG 0.422780 5:+90786096 MsG0580029038.01.T01:CDS
TCTCAACATAGACCAAAGTA+TGG 0.430434 5:-90786597 None:intergenic
TAGAGAAAGAGAAGGTTGAC+TGG 0.442226 5:+90785002 MsG0580029038.01.T01:CDS
AGGGTCAGATAAGGCGTGTT+CGG 0.445363 5:+90786116 MsG0580029038.01.T01:CDS
GTGACTCCGCCGGGGTCTCC+GGG 0.447048 5:+90786076 MsG0580029038.01.T01:CDS
GGAAGTGAAGTGGCGGGAAA+GGG 0.447421 5:+90786097 MsG0580029038.01.T01:CDS
TCGCATTCTGGCGGTGGCGG+TGG 0.451931 5:-90784615 None:intergenic
GCCATATGTTATATCGGAAC+CGG 0.452791 5:+90785925 MsG0580029038.01.T01:CDS
CGAGCCGTTCTTTGCCGGAA+CGG 0.455015 5:+90785205 MsG0580029038.01.T01:CDS
AGTAGTGTAGTGTTTGATTG+AGG 0.455534 5:+90786423 MsG0580029038.01.T01:three_prime_UTR
CATTGAGATTAGCCATACTT+TGG 0.457113 5:+90786585 MsG0580029038.01.T01:three_prime_UTR
ACTTGCGAGTGATGGCTTAT+GGG 0.459173 5:+90785991 MsG0580029038.01.T01:CDS
ACAGTGCACGTCATAAGTTT+TGG 0.460932 5:-90786305 None:intergenic
TGTCGTTTCCGGCTATTCTC+CGG 0.464903 5:-90784564 None:intergenic
GGCATTGGCGAGGAATAGTT+CGG 0.467216 5:+90786164 MsG0580029038.01.T01:three_prime_UTR
TAGTGTTTGATTGAGGAGAA+AGG 0.469462 5:+90786430 MsG0580029038.01.T01:three_prime_UTR
GGAGAGGACGGTGACTCCGC+CGG 0.475695 5:+90786066 MsG0580029038.01.T01:CDS
TCCGGTTCCGATATAACATA+TGG 0.479797 5:-90785926 None:intergenic
TCCAACTCATCGGGTCGATC+CGG 0.491599 5:-90785348 None:intergenic
AGGTTAAAATTGTATCTTGT+GGG 0.492288 5:+90786450 MsG0580029038.01.T01:three_prime_UTR
TTAATCCGATCCAACTCATC+GGG 0.494629 5:-90785357 None:intergenic
TTTGTTGACGAAGTTGGCAT+TGG 0.495559 5:+90786149 MsG0580029038.01.T01:exon
AAAATCATTGTTTCTAATTG+CGG 0.499926 5:+90785175 MsG0580029038.01.T01:CDS
CTGAGGACGTGTGATCTATT+GGG 0.500625 5:+90785385 MsG0580029038.01.T01:CDS
AAAACAATTGATGTAAACTA+AGG 0.506596 5:+90786527 MsG0580029038.01.T01:three_prime_UTR
GCAAAACGACACGGCATGTA+GGG 0.509842 5:+90786021 MsG0580029038.01.T01:CDS
TGGGATGGTGCAAGAGTGCT+TGG 0.516594 5:+90785404 MsG0580029038.01.T01:CDS
CAGATCCACCGGAGAATAGC+CGG 0.520939 5:+90784556 MsG0580029038.01.T01:CDS
CAAAGTATGGCTAATCTCAA+TGG 0.522860 5:-90786584 None:intergenic
CTCTCCGTTATAGTTACCTC+CGG 0.523739 5:-90785944 None:intergenic
TGAAATACTGGCAGATCCAC+CGG 0.540962 5:+90784545 None:intergenic
TTGCAACTATGTGTAAAGAA+AGG 0.542336 5:+90784954 MsG0580029038.01.T01:CDS
CTGGAAGTCAACGATGGAGA+AGG 0.544232 5:+90785021 MsG0580029038.01.T01:CDS
AAGGTTAAAATTGTATCTTG+TGG 0.544861 5:+90786449 MsG0580029038.01.T01:three_prime_UTR
GCCGGATCGACCCGATGAGT+TGG 0.547516 5:+90785347 MsG0580029038.01.T01:intron
GGGGTCTCCGGGAAGTGAAG+TGG 0.551828 5:+90786087 MsG0580029038.01.T01:CDS
AGAAGAAATAGAGAAAGAGA+AGG 0.557787 5:+90784994 MsG0580029038.01.T01:CDS
GTGTCTCAAGGCGGAGAGGA+CGG 0.558698 5:+90786054 MsG0580029038.01.T01:CDS
AACGCCGTTCCGGCAAAGAA+CGG 0.561662 5:-90785209 None:intergenic
AAGTACTGATGAAGAATCAA+AGG 0.567543 5:+90784662 MsG0580029038.01.T01:CDS
CAACTTCGTCAACAAAATTG+AGG 0.568402 5:-90786142 None:intergenic
ACTTCACTTCCCGGAGACCC+CGG 0.569577 5:-90786085 None:intergenic
ACCTTATGATCGGTGGAAAG+AGG 0.572974 5:-90785238 None:intergenic
TGGCGGGAAAGGGTCAGATA+AGG 0.575026 5:+90786107 MsG0580029038.01.T01:CDS
GTTAATCCGATCCAACTCAT+CGG 0.579829 5:-90785358 None:intergenic
AATAAAACTAACCTTATGAT+CGG 0.584275 5:-90785248 None:intergenic
TCTCCGGGAAGTGAAGTGGC+GGG 0.590927 5:+90786091 MsG0580029038.01.T01:CDS
AAAACTAACCTTATGATCGG+TGG 0.595604 5:-90785245 None:intergenic
GTCTCCGGGAAGTGAAGTGG+CGG 0.597167 5:+90786090 MsG0580029038.01.T01:CDS
TGTCTGATACTTGCGAGTGA+TGG 0.597668 5:+90785983 MsG0580029038.01.T01:CDS
ATCGACCCGATGAGTTGGAT+CGG 0.600754 5:+90785352 MsG0580029038.01.T01:CDS
GCAAAGTGGGAGGAAAATGG+TGG 0.605109 5:+90786363 MsG0580029038.01.T01:three_prime_UTR
ATGATCGGTGGAAAGAGGAA+TGG 0.609265 5:-90785233 None:intergenic
CGTTTCCGGCTATTCTCCGG+TGG 0.614168 5:-90784561 None:intergenic
GGTGGTGCAGATGTGTCTCA+AGG 0.619444 5:+90786042 MsG0580029038.01.T01:CDS
GGAACCGGAGGTAACTATAA+CGG 0.620933 5:+90785940 MsG0580029038.01.T01:CDS
TGCAAAACGACACGGCATGT+AGG 0.625098 5:+90786020 MsG0580029038.01.T01:CDS
TCTGGACACCTATGATTCGT+AGG 0.628838 5:+90786329 MsG0580029038.01.T01:three_prime_UTR
TTCGGACAATGTTAGCGTGG+TGG 0.640919 5:+90786182 MsG0580029038.01.T01:three_prime_UTR
TGACGAAGTTGGCATTGGCG+AGG 0.644130 5:+90786154 MsG0580029038.01.T01:exon
CAAAGTGGGAGGAAAATGGT+GGG 0.644587 5:+90786364 MsG0580029038.01.T01:three_prime_UTR
GAGTGATGGCTTATGGGACG+TGG 0.646730 5:+90785997 MsG0580029038.01.T01:CDS
TAGTTCGGACAATGTTAGCG+TGG 0.649801 5:+90786179 MsG0580029038.01.T01:three_prime_UTR
AAACGACACGGCATGTAGGG+TGG 0.658006 5:+90786024 MsG0580029038.01.T01:CDS
GGACGTGGTGCAAAACGACA+CGG 0.659962 5:+90786012 MsG0580029038.01.T01:CDS
ACTACACTACTAAAATCACA+TGG 0.660829 5:-90786411 None:intergenic
GGATCGGATTAACAAAGCTG+AGG 0.679950 5:+90785368 MsG0580029038.01.T01:CDS
AAAGTGGGAGGAAAATGGTG+GGG 0.681985 5:+90786365 MsG0580029038.01.T01:three_prime_UTR
GGTTGACTGGAAGTCAACGA+TGG 0.683076 5:+90785015 MsG0580029038.01.T01:CDS
ATATGTTATATCGGAACCGG+AGG 0.683158 5:+90785928 MsG0580029038.01.T01:CDS
AGATGTGTCTCAAGGCGGAG+AGG 0.686437 5:+90786050 MsG0580029038.01.T01:CDS
GGACGTGTGATCTATTGGGA+TGG 0.703968 5:+90785389 MsG0580029038.01.T01:CDS
AGAGGACGGTGACTCCGCCG+GGG 0.704487 5:+90786068 MsG0580029038.01.T01:CDS
GGTGGTGGTGATGAAACAGA+TGG 0.710550 5:-90784597 None:intergenic
GGTGCAGATGTGTCTCAAGG+CGG 0.721838 5:+90786045 MsG0580029038.01.T01:CDS
CGGAGGTAACTATAACGGAG+AGG 0.725334 5:+90785945 MsG0580029038.01.T01:CDS
TCACTTCCCGGAGACCCCGG+CGG 0.744978 5:-90786082 None:intergenic
TATAACGGAGAGGAGTGACG+AGG 0.759781 5:+90785955 MsG0580029038.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTATTAATTTTT+TGG + Chr5:90785486-90785505 MsG0580029038.01.T01:intron 0.0%
!! AAAAAAAATGATTATGATAA+CGG - Chr5:90784891-90784910 None:intergenic 10.0%
!! AACAATTAATAATAGTAATA+GGG + Chr5:90786238-90786257 MsG0580029038.01.T01:three_prime_UTR 10.0%
!! TAACAATTAATAATAGTAAT+AGG + Chr5:90786237-90786256 MsG0580029038.01.T01:three_prime_UTR 10.0%
!! TGATATATTATATATAAACA+TGG - Chr5:90785606-90785625 None:intergenic 10.0%
!!! AAAATGGTTCTAAATTATTA+TGG + Chr5:90785873-90785892 MsG0580029038.01.T01:intron 15.0%
!!! ATCATAATCATTTTTTTTAG+TGG + Chr5:90784893-90784912 MsG0580029038.01.T01:intron 15.0%
!!! TATTATGGTTTATTTTTGTA+GGG + Chr5:90785888-90785907 MsG0580029038.01.T01:intron 15.0%
!!! TTATTATGGTTTATTTTTGT+AGG + Chr5:90785887-90785906 MsG0580029038.01.T01:intron 15.0%
!! AAAACAATTGATGTAAACTA+AGG + Chr5:90786527-90786546 MsG0580029038.01.T01:three_prime_UTR 20.0%
!! AATAAAACTAACCTTATGAT+CGG - Chr5:90785251-90785270 None:intergenic 20.0%
!! TATGCATCATTATTGAAAAA+TGG + Chr5:90785857-90785876 MsG0580029038.01.T01:intron 20.0%
!!! AAAATCATTGTTTCTAATTG+CGG + Chr5:90785175-90785194 MsG0580029038.01.T01:CDS 20.0%
!!! ATTATGGTTTATTTTTGTAG+GGG + Chr5:90785889-90785908 MsG0580029038.01.T01:intron 20.0%
! AAGGTTAAAATTGTATCTTG+TGG + Chr5:90786449-90786468 MsG0580029038.01.T01:three_prime_UTR 25.0%
! AATCATCAGAAAAAATCTCA+AGG - Chr5:90786391-90786410 None:intergenic 25.0%
! AGGTTAAAATTGTATCTTGT+GGG + Chr5:90786450-90786469 MsG0580029038.01.T01:three_prime_UTR 25.0%
! CGTATAAAGAAGACATATAT+TGG + Chr5:90786555-90786574 MsG0580029038.01.T01:three_prime_UTR 25.0%
! GAAAAACAAGATCATTTCTT+CGG + Chr5:90784814-90784833 MsG0580029038.01.T01:intron 25.0%
! TAAAAAATCCTACGAATCAT+AGG - Chr5:90786340-90786359 None:intergenic 25.0%
! TAGTAATAGGGATTGATTAA+TGG + Chr5:90786250-90786269 MsG0580029038.01.T01:three_prime_UTR 25.0%
!! AACTGATGTATTCCATATTT+TGG - Chr5:90784737-90784756 None:intergenic 25.0%
!! GTATTTGATTAGTTCAAATG+TGG + Chr5:90785508-90785527 MsG0580029038.01.T01:intron 25.0%
!! TATGATATTTTGTATCACAC+CGG - Chr5:90785715-90785734 None:intergenic 25.0%
!! TTAGAAACAATGATTTTCTC+CGG - Chr5:90785172-90785191 None:intergenic 25.0%
!! TTGTGCATGATTTCATTTTA+CGG + Chr5:90785531-90785550 MsG0580029038.01.T01:intron 25.0%
!! TTTTATTAGAATGGATGAAG+AGG + Chr5:90785044-90785063 MsG0580029038.01.T01:CDS 25.0%
!!! TAGTGGATCTGTTTTTAATT+AGG + Chr5:90784910-90784929 MsG0580029038.01.T01:intron 25.0%
!!! TGATTCGTAGGATTTTTTAT+TGG + Chr5:90786341-90786360 MsG0580029038.01.T01:three_prime_UTR 25.0%
!!! TTTTTTTAGCACAATATGTG+TGG - Chr5:90785828-90785847 None:intergenic 25.0%
ACTACACTACTAAAATCACA+TGG - Chr5:90786414-90786433 None:intergenic 30.0%
AGAAGAAATAGAGAAAGAGA+AGG + Chr5:90784994-90785013 MsG0580029038.01.T01:CDS 30.0%
ATATGGAATACATCAGTTTG+TGG + Chr5:90784739-90784758 MsG0580029038.01.T01:intron 30.0%
ATCACGATCAATAAGTAGTT+TGG - Chr5:90785682-90785701 None:intergenic 30.0%
CAATAATGATGCATAACGTA+TGG - Chr5:90785852-90785871 None:intergenic 30.0%
CTTGAAGCCATATGTTATAT+CGG + Chr5:90785919-90785938 MsG0580029038.01.T01:CDS 30.0%
GAAGAATGTTCTCCAAAATA+TGG + Chr5:90784722-90784741 MsG0580029038.01.T01:intron 30.0%
TAGGGATTGATTAATGGAAT+TGG + Chr5:90786256-90786275 MsG0580029038.01.T01:three_prime_UTR 30.0%
TTGCAACTATGTGTAAAGAA+AGG + Chr5:90784954-90784973 MsG0580029038.01.T01:CDS 30.0%
!! AAGAAGACATATATTGGCTT+TGG + Chr5:90786561-90786580 MsG0580029038.01.T01:three_prime_UTR 30.0%
!! AAGTACTGATGAAGAATCAA+AGG + Chr5:90784662-90784681 MsG0580029038.01.T01:CDS 30.0%
!! GGTTGATGTGTTTTTACTAT+AGG + Chr5:90784931-90784950 MsG0580029038.01.T01:intron 30.0%
!!! AGGATTTTTTATTGGCAAAG+TGG + Chr5:90786349-90786368 MsG0580029038.01.T01:three_prime_UTR 30.0%
!!! GGATTTTTTATTGGCAAAGT+GGG + Chr5:90786350-90786369 MsG0580029038.01.T01:three_prime_UTR 30.0%
!!! TGGAGAAGGTTTTATTAGAA+TGG + Chr5:90785035-90785054 MsG0580029038.01.T01:CDS 30.0%
AAAACTAACCTTATGATCGG+TGG - Chr5:90785248-90785267 None:intergenic 35.0%
AGTAGTGTAGTGTTTGATTG+AGG + Chr5:90786423-90786442 MsG0580029038.01.T01:three_prime_UTR 35.0%
CAAAGTATGGCTAATCTCAA+TGG - Chr5:90786587-90786606 None:intergenic 35.0%
CAACTTCGTCAACAAAATTG+AGG - Chr5:90786145-90786164 None:intergenic 35.0%
GTTTGGTATCACAATTGTGT+CGG - Chr5:90785665-90785684 None:intergenic 35.0%
TAGTGTTTGATTGAGGAGAA+AGG + Chr5:90786430-90786449 MsG0580029038.01.T01:three_prime_UTR 35.0%
TCTCAACATAGACCAAAGTA+TGG - Chr5:90786600-90786619 None:intergenic 35.0%
TGTATCTTGTGGGAAACAAT+TGG + Chr5:90786460-90786479 MsG0580029038.01.T01:three_prime_UTR 35.0%
TTAGCACAATATGTGTGGTA+TGG - Chr5:90785823-90785842 None:intergenic 35.0%
TTGTGGAAGGAGAAAAGAAA+TGG + Chr5:90784756-90784775 MsG0580029038.01.T01:intron 35.0%
! CATTGAGATTAGCCATACTT+TGG + Chr5:90786585-90786604 MsG0580029038.01.T01:three_prime_UTR 35.0%
! CTCAATTTTGTTGACGAAGT+TGG + Chr5:90786143-90786162 MsG0580029038.01.T01:exon 35.0%
!!! TTTTTTATTGGCAAAGTGGG+AGG + Chr5:90786353-90786372 MsG0580029038.01.T01:three_prime_UTR 35.0%
ATATGTTATATCGGAACCGG+AGG + Chr5:90785928-90785947 MsG0580029038.01.T01:CDS 40.0%
GACAACCACGTATGAATCAA+GGG - Chr5:90785584-90785603 None:intergenic 40.0%
GATCGTGATTCTAACACATC+CGG + Chr5:90785693-90785712 MsG0580029038.01.T01:intron 40.0%
GCCATATGTTATATCGGAAC+CGG + Chr5:90785925-90785944 MsG0580029038.01.T01:CDS 40.0%
GGAATACATCAGTTTGTGGA+AGG + Chr5:90784743-90784762 MsG0580029038.01.T01:intron 40.0%
GTTAATCCGATCCAACTCAT+CGG - Chr5:90785361-90785380 None:intergenic 40.0%
TAGAGAAAGAGAAGGTTGAC+TGG + Chr5:90785002-90785021 MsG0580029038.01.T01:CDS 40.0%
TCCGGTTCCGATATAACATA+TGG - Chr5:90785929-90785948 None:intergenic 40.0%
TGTTACCCTTGATTCATACG+TGG + Chr5:90785576-90785595 MsG0580029038.01.T01:intron 40.0%
TTAATCCGATCCAACTCATC+GGG - Chr5:90785360-90785379 None:intergenic 40.0%
TTTGTTGACGAAGTTGGCAT+TGG + Chr5:90786149-90786168 MsG0580029038.01.T01:exon 40.0%
! ACAGTGCACGTCATAAGTTT+TGG - Chr5:90786308-90786327 None:intergenic 40.0%
! TCAACTGTGTTTTCGCATTC+TGG - Chr5:90784630-90784649 None:intergenic 40.0%
!! CATTTCTTCGGTGTTTACGA+CGG + Chr5:90784826-90784845 MsG0580029038.01.T01:intron 40.0%
!! TGCACGTCATAAGTTTTGGT+CGG - Chr5:90786304-90786323 None:intergenic 40.0%
AAAGTGGGAGGAAAATGGTG+GGG + Chr5:90786365-90786384 MsG0580029038.01.T01:three_prime_UTR 45.0%
AACTCCTCATGTGATGCTGT+TGG + Chr5:90785118-90785137 MsG0580029038.01.T01:intron 45.0%
ACCTTATGATCGGTGGAAAG+AGG - Chr5:90785241-90785260 None:intergenic 45.0%
ACTTGCGAGTGATGGCTTAT+GGG + Chr5:90785991-90786010 MsG0580029038.01.T01:CDS 45.0%
AGAACCAACAGCATCACATG+AGG - Chr5:90785125-90785144 None:intergenic 45.0%
ATGATCGGTGGAAAGAGGAA+TGG - Chr5:90785236-90785255 None:intergenic 45.0%
CAAAGTGGGAGGAAAATGGT+GGG + Chr5:90786364-90786383 MsG0580029038.01.T01:three_prime_UTR 45.0%
CAATATGTGTGGTATGGCGA+TGG - Chr5:90785817-90785836 None:intergenic 45.0%
CTCACCAATAGCTCTTGACA+TGG - Chr5:90785438-90785457 None:intergenic 45.0%
CTCTCCGTTATAGTTACCTC+CGG - Chr5:90785947-90785966 None:intergenic 45.0%
CTGAGGACGTGTGATCTATT+GGG + Chr5:90785385-90785404 MsG0580029038.01.T01:CDS 45.0%
GGAACCGGAGGTAACTATAA+CGG + Chr5:90785940-90785959 MsG0580029038.01.T01:CDS 45.0%
GGACAACCACGTATGAATCA+AGG - Chr5:90785585-90785604 None:intergenic 45.0%
GGATCGGATTAACAAAGCTG+AGG + Chr5:90785368-90785387 MsG0580029038.01.T01:CDS 45.0%
TACTTGCGAGTGATGGCTTA+TGG + Chr5:90785990-90786009 MsG0580029038.01.T01:CDS 45.0%
TAGTTCGGACAATGTTAGCG+TGG + Chr5:90786179-90786198 MsG0580029038.01.T01:three_prime_UTR 45.0%
TCCTCTTTCCACCGATCATA+AGG + Chr5:90785237-90785256 MsG0580029038.01.T01:CDS 45.0%
TCTGGACACCTATGATTCGT+AGG + Chr5:90786329-90786348 MsG0580029038.01.T01:three_prime_UTR 45.0%
TGTCTGATACTTGCGAGTGA+TGG + Chr5:90785983-90786002 MsG0580029038.01.T01:CDS 45.0%
TTGGCAAAGTGGGAGGAAAA+TGG + Chr5:90786360-90786379 MsG0580029038.01.T01:three_prime_UTR 45.0%
TTGGCCATGTCAAGAGCTAT+TGG + Chr5:90785431-90785450 MsG0580029038.01.T01:intron 45.0%
! ACTGTGTTTTCGCATTCTGG+CGG - Chr5:90784627-90784646 None:intergenic 45.0%
! GATCTAGCTTCTGTCGTTTC+CGG - Chr5:90784578-90784597 None:intergenic 45.0%
! GATTTTCTCCGGCGTAACAA+CGG - Chr5:90785161-90785180 None:intergenic 45.0%
!!! GATTTATTAATTTTTTTTAA+AGG + Chr5:90786618-90786637 MsG0580029038.01.T01:three_prime_UTR 5.0%
AGGGTCAGATAAGGCGTGTT+CGG + Chr5:90786116-90786135 MsG0580029038.01.T01:CDS 50.0%
CTGGAAGTCAACGATGGAGA+AGG + Chr5:90785021-90785040 MsG0580029038.01.T01:CDS 50.0%
CTTATGACGTGCACTGTGTC+TGG + Chr5:90786311-90786330 MsG0580029038.01.T01:three_prime_UTR 50.0%
GCAAAACGACACGGCATGTA+GGG + Chr5:90786021-90786040 MsG0580029038.01.T01:CDS 50.0%
GCAAAGTGGGAGGAAAATGG+TGG + Chr5:90786363-90786382 MsG0580029038.01.T01:three_prime_UTR 50.0%
GCTGAGGACGTGTGATCTAT+TGG + Chr5:90785384-90785403 MsG0580029038.01.T01:CDS 50.0%
GGACGTGTGATCTATTGGGA+TGG + Chr5:90785389-90785408 MsG0580029038.01.T01:CDS 50.0%
GGTTGACTGGAAGTCAACGA+TGG + Chr5:90785015-90785034 MsG0580029038.01.T01:CDS 50.0%
TCCGGCTGCACAAACGAATA+CGG - Chr5:90785333-90785352 None:intergenic 50.0%
TGCAAAACGACACGGCATGT+AGG + Chr5:90786020-90786039 MsG0580029038.01.T01:CDS 50.0%
TGTTGTTGCCGTTGTTACGC+CGG + Chr5:90785150-90785169 MsG0580029038.01.T01:intron 50.0%
TTCGGACAATGTTAGCGTGG+TGG + Chr5:90786182-90786201 MsG0580029038.01.T01:three_prime_UTR 50.0%
! ATCGACCCGATGAGTTGGAT+CGG + Chr5:90785352-90785371 MsG0580029038.01.T01:CDS 50.0%
! CGGAGGTAACTATAACGGAG+AGG + Chr5:90785945-90785964 MsG0580029038.01.T01:CDS 50.0%
! GGTGGTGGTGATGAAACAGA+TGG - Chr5:90784600-90784619 None:intergenic 50.0%
! TATAACGGAGAGGAGTGACG+AGG + Chr5:90785955-90785974 MsG0580029038.01.T01:CDS 50.0%
! TGTCGTTTCCGGCTATTCTC+CGG - Chr5:90784567-90784586 None:intergenic 50.0%
!! GCGTGGTGGTTGTTGATTTG+AGG + Chr5:90786196-90786215 MsG0580029038.01.T01:three_prime_UTR 50.0%
!! GGCATTGGCGAGGAATAGTT+CGG + Chr5:90786164-90786183 MsG0580029038.01.T01:three_prime_UTR 50.0%
!! TGCAAGAGTGCTTGGAGTGT+TGG + Chr5:90785412-90785431 MsG0580029038.01.T01:intron 50.0%
!! TTCGGTGTTTACGACGGTCA+TGG + Chr5:90784832-90784851 MsG0580029038.01.T01:intron 50.0%
AAACGACACGGCATGTAGGG+TGG + Chr5:90786024-90786043 MsG0580029038.01.T01:CDS 55.0%
AACGCCGTTCCGGCAAAGAA+CGG - Chr5:90785212-90785231 None:intergenic 55.0%
AGATGTGTCTCAAGGCGGAG+AGG + Chr5:90786050-90786069 MsG0580029038.01.T01:CDS 55.0%
ATTCGCGAGCCGTTCTTTGC+CGG + Chr5:90785200-90785219 MsG0580029038.01.T01:CDS 55.0%
CAGATCCACCGGAGAATAGC+CGG + Chr5:90784556-90784575 MsG0580029038.01.T01:CDS 55.0%
CCCGTATTCGTTTGTGCAGC+CGG + Chr5:90785329-90785348 MsG0580029038.01.T01:intron 55.0%
CCGGCTGCACAAACGAATAC+GGG - Chr5:90785332-90785351 None:intergenic 55.0%
GAGTGATGGCTTATGGGACG+TGG + Chr5:90785997-90786016 MsG0580029038.01.T01:CDS 55.0%
GGACGTGGTGCAAAACGACA+CGG + Chr5:90786012-90786031 MsG0580029038.01.T01:CDS 55.0%
GGTGCAGATGTGTCTCAAGG+CGG + Chr5:90786045-90786064 MsG0580029038.01.T01:CDS 55.0%
GGTGGTGCAGATGTGTCTCA+AGG + Chr5:90786042-90786061 MsG0580029038.01.T01:CDS 55.0%
TCCAACTCATCGGGTCGATC+CGG - Chr5:90785351-90785370 None:intergenic 55.0%
TGGCGGGAAAGGGTCAGATA+AGG + Chr5:90786107-90786126 MsG0580029038.01.T01:CDS 55.0%
TTTCCCGCCACTTCACTTCC+CGG - Chr5:90786097-90786116 None:intergenic 55.0%
! GGAAGTGAAGTGGCGGGAAA+GGG + Chr5:90786097-90786116 MsG0580029038.01.T01:CDS 55.0%
! GTGTTTTCGCATTCTGGCGG+TGG - Chr5:90784624-90784643 None:intergenic 55.0%
! TTTTCGCATTCTGGCGGTGG+CGG - Chr5:90784621-90784640 None:intergenic 55.0%
!! TGACGAAGTTGGCATTGGCG+AGG + Chr5:90786154-90786173 MsG0580029038.01.T01:exon 55.0%
!! TGGGATGGTGCAAGAGTGCT+TGG + Chr5:90785404-90785423 MsG0580029038.01.T01:CDS 55.0%
ACTTCACTTCCCGGAGACCC+CGG - Chr5:90786088-90786107 None:intergenic 60.0%
CGAGCCGTTCTTTGCCGGAA+CGG + Chr5:90785205-90785224 MsG0580029038.01.T01:CDS 60.0%
CGTTTCCGGCTATTCTCCGG+TGG - Chr5:90784564-90784583 None:intergenic 60.0%
GAGGAATGGCAACGCCGTTC+CGG - Chr5:90785222-90785241 None:intergenic 60.0%
GTCTCCGGGAAGTGAAGTGG+CGG + Chr5:90786090-90786109 MsG0580029038.01.T01:CDS 60.0%
GTGTCTCAAGGCGGAGAGGA+CGG + Chr5:90786054-90786073 MsG0580029038.01.T01:CDS 60.0%
TCTCCGGGAAGTGAAGTGGC+GGG + Chr5:90786091-90786110 MsG0580029038.01.T01:CDS 60.0%
! GGGAAGTGAAGTGGCGGGAA+AGG + Chr5:90786096-90786115 MsG0580029038.01.T01:CDS 60.0%
GCCGGATCGACCCGATGAGT+TGG + Chr5:90785347-90785366 MsG0580029038.01.T01:intron 65.0%
GGGGTCTCCGGGAAGTGAAG+TGG + Chr5:90786087-90786106 MsG0580029038.01.T01:CDS 65.0%
AGAGGACGGTGACTCCGCCG+GGG + Chr5:90786068-90786087 MsG0580029038.01.T01:CDS 70.0%
GAGAGGACGGTGACTCCGCC+GGG + Chr5:90786067-90786086 MsG0580029038.01.T01:CDS 70.0%
GGAGAGGACGGTGACTCCGC+CGG + Chr5:90786066-90786085 MsG0580029038.01.T01:CDS 70.0%
TCACTTCCCGGAGACCCCGG+CGG - Chr5:90786085-90786104 None:intergenic 70.0%
! CATTCTGGCGGTGGCGGTGG+TGG - Chr5:90784615-90784634 None:intergenic 70.0%
! TCGCATTCTGGCGGTGGCGG+TGG - Chr5:90784618-90784637 None:intergenic 70.0%
GGTGACTCCGCCGGGGTCTC+CGG + Chr5:90786075-90786094 MsG0580029038.01.T01:CDS 75.0%
GTGACTCCGCCGGGGTCTCC+GGG + Chr5:90786076-90786095 MsG0580029038.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 90784552 90786672 90784552 ID=MsG0580029038.01;Name=MsG0580029038.01
Chr5 mRNA 90784552 90786672 90784552 ID=MsG0580029038.01.T01;Parent=MsG0580029038.01;Name=MsG0580029038.01.T01;_AED=0.25;_eAED=0.25;_QI=0|0.25|0.2|1|1|1|5|516|221
Chr5 exon 90784552 90784692 90784552 ID=MsG0580029038.01.T01:exon:49172;Parent=MsG0580029038.01.T01
Chr5 exon 90784953 90785065 90784953 ID=MsG0580029038.01.T01:exon:49173;Parent=MsG0580029038.01.T01
Chr5 exon 90785175 90785258 90785175 ID=MsG0580029038.01.T01:exon:49174;Parent=MsG0580029038.01.T01
Chr5 exon 90785348 90785427 90785348 ID=MsG0580029038.01.T01:exon:49175;Parent=MsG0580029038.01.T01
Chr5 exon 90785909 90786672 90785909 ID=MsG0580029038.01.T01:exon:49176;Parent=MsG0580029038.01.T01
Chr5 CDS 90784552 90784692 90784552 ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5 CDS 90784953 90785065 90784953 ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5 CDS 90785175 90785258 90785175 ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5 CDS 90785348 90785427 90785348 ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5 CDS 90785909 90786156 90785909 ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5 three_prime_UTR 90786157 90786672 90786157 ID=MsG0580029038.01.T01:three_prime_utr;Parent=MsG0580029038.01.T01
Gene Sequence

>MsG0580029038.01.T01

CTGGCAGATCCACCGGAGAATAGCCGGAAACGACAGAAGCTAGATCCATCTGTTTCATCACCACCACCGCCACCGCCAGAATGCGAAAACACAGTTGATAGCTGTGAATCAAGTACTGATGAAGAATCAAAGGAAAACGAAGTTGCAACTATGTGTAAAGAAAGGTTGCATGAAATTGTTGAAGAAGAAATAGAGAAAGAGAAGGTTGACTGGAAGTCAACGATGGAGAAGGTTTTATTAGAATGGATGAAGAGAAAATCATTGTTTCTAATTGCGGTGATTCGCGAGCCGTTCTTTGCCGGAACGGCGTTGCCATTCCTCTTTCCACCGATCATAAGCCGGATCGACCCGATGAGTTGGATCGGATTAACAAAGCTGAGGACGTGTGATCTATTGGGATGGTGCAAGAGTGCTTGGAGGGACAATTACTTGAAGCCATATGTTATATCGGAACCGGAGGTAACTATAACGGAGAGGAGTGACGAGGATGAATGTCTGATACTTGCGAGTGATGGCTTATGGGACGTGGTGCAAAACGACACGGCATGTAGGGTGGTGCAGATGTGTCTCAAGGCGGAGAGGACGGTGACTCCGCCGGGGTCTCCGGGAAGTGAAGTGGCGGGAAAGGGTCAGATAAGGCGTGTTCGGATGCCTCAATTTTGTTGA

Protein sequence

>MsG0580029038.01.T01

LADPPENSRKRQKLDPSVSSPPPPPPECENTVDSCESSTDEESKENEVATMCKERLHEIVEEEIEKEKVDWKSTMEKVLLEWMKRKSLFLIAVIREPFFAGTALPFLFPPIISRIDPMSWIGLTKLRTCDLLGWCKSAWRDNYLKPYVISEPEVTITERSDEDECLILASDGLWDVVQNDTACRVVQMCLKAERTVTPPGSPGSEVAGKGQIRRVRMPQFC*