AlfalfaGEDB | MsG0580029038.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029038.01

KEGG: K14497
GO: GO:0003824
PFAM: PF00481

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029038.01.T01	PNY06842.1	43.689	309	71	11	1	210	42	346	5.61E-49	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029038.01.T01	Q65XG6	68.333	60	19	0	141	200	289	348	1.17E-20	92.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029038.01.T01	A0A2K3NUZ1	43.689	309	71	11	1	210	42	346	2.68e-49	174

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048073.01	MsG0580029038.01	0.812450	4.212960e-51	2.679739e-48
MsG0080048938.01	MsG0580029038.01	0.815261	1.012405e-51	6.945841e-49
MsG0180000114.01	MsG0580029038.01	0.821617	3.671674e-53	3.001959e-50
MsG0180000814.01	MsG0580029038.01	0.802268	6.082450e-49	2.966571e-46
MsG0180003725.01	MsG0580029038.01	0.832038	1.187549e-55	1.311795e-52
MsG0180005418.01	MsG0580029038.01	0.802474	5.514211e-49	2.703606e-46
MsG0280008113.01	MsG0580029038.01	0.803527	3.340620e-49	1.682675e-46
MsG0280008114.01	MsG0580029038.01	0.802683	4.993089e-49	2.461176e-46
MsG0280008738.01	MsG0580029038.01	0.801298	9.618448e-49	4.577282e-46
MsG0380011669.01	MsG0580029038.01	0.800619	1.323671e-48	6.191785e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029038.01.T01	MTR_5g080680	52.093	215	49	8	46	210	142	352	5.25e-44	152
MsG0580029038.01.T01	MTR_5g080680	89.130	46	5	0	1	46	39	84	2.00e-12	65.9
MsG0580029038.01.T01	MTR_3g068200	39.171	217	80	8	46	213	133	346	2.87e-30	115
MsG0580029038.01.T01	MTR_1g028300	62.264	53	20	0	141	193	285	337	8.71e-17	78.6
MsG0580029038.01.T01	MTR_4g125810	29.255	188	82	8	47	187	264	447	7.30e-14	70.5
MsG0580029038.01.T01	MTR_5g080680	89.130	46	5	0	1	46	39	84	1.20e-12	65.9
MsG0580029038.01.T01	MTR_5g009370	49.057	53	27	0	141	193	233	285	3.95e-12	64.7
MsG0580029038.01.T01	MTR_8g102550	62.500	48	18	0	138	185	293	340	5.92e-12	64.7
MsG0580029038.01.T01	MTR_3g104710	52.459	61	28	1	127	187	427	486	6.21e-12	64.7
MsG0580029038.01.T01	MTR_2g040500	27.317	205	77	6	47	183	278	478	3.24e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029038.01.T01	AT3G11410	74.545	55	14	0	138	192	294	348	1.40e-21	92.0
MsG0580029038.01.T01	AT1G07430	35.533	197	72	8	46	191	167	359	3.27e-21	91.3
MsG0580029038.01.T01	AT5G59220	60.870	69	27	0	138	206	294	362	2.96e-20	88.6
MsG0580029038.01.T01	AT2G29380	72.727	55	14	1	138	192	263	316	1.43e-18	83.2
MsG0580029038.01.T01	AT1G72770	68.085	47	15	0	141	187	402	448	9.40e-14	70.1
MsG0580029038.01.T01	AT1G72770	68.085	47	15	0	141	187	402	448	9.40e-14	70.1
MsG0580029038.01.T01	AT1G72770	68.085	47	15	0	141	187	402	448	9.40e-14	70.1
MsG0580029038.01.T01	AT5G57050	30.319	188	81	6	46	187	170	353	2.38e-13	68.6
MsG0580029038.01.T01	AT4G26080	31.148	183	84	5	46	187	182	363	2.82e-13	68.6
MsG0580029038.01.T01	AT5G57050	30.319	188	81	6	46	187	130	313	3.74e-13	68.2

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Find 99 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTGATGTAAACTA+AGG	0.506596	5:+90786527	MsG0580029038.01.T01:three_prime_UTR
AAAACTAACCTTATGATCGG+TGG	0.595604	5:-90785245	None:intergenic
AAAATCATTGTTTCTAATTG+CGG	0.499926	5:+90785175	MsG0580029038.01.T01:CDS
AAACGACACGGCATGTAGGG+TGG	0.658006	5:+90786024	MsG0580029038.01.T01:CDS
AAAGTGGGAGGAAAATGGTG+GGG	0.681985	5:+90786365	MsG0580029038.01.T01:three_prime_UTR
AACAATTAATAATAGTAATA+GGG	0.379877	5:+90786238	MsG0580029038.01.T01:three_prime_UTR
AACGCCGTTCCGGCAAAGAA+CGG	0.561662	5:-90785209	None:intergenic
AAGAAGACATATATTGGCTT+TGG	0.383889	5:+90786561	MsG0580029038.01.T01:three_prime_UTR
AAGGTTAAAATTGTATCTTG+TGG	0.544861	5:+90786449	MsG0580029038.01.T01:three_prime_UTR
AAGTACTGATGAAGAATCAA+AGG	0.567543	5:+90784662	MsG0580029038.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTACACTACTAAAATCACA+TGG	-	Chr5:90786414-90786433	None:intergenic	30.0%
AGAAGAAATAGAGAAAGAGA+AGG	+	Chr5:90784994-90785013	MsG0580029038.01.T01:CDS	30.0%
ATATGGAATACATCAGTTTG+TGG	+	Chr5:90784739-90784758	MsG0580029038.01.T01:intron	30.0%
ATCACGATCAATAAGTAGTT+TGG	-	Chr5:90785682-90785701	None:intergenic	30.0%
CAATAATGATGCATAACGTA+TGG	-	Chr5:90785852-90785871	None:intergenic	30.0%
CTTGAAGCCATATGTTATAT+CGG	+	Chr5:90785919-90785938	MsG0580029038.01.T01:CDS	30.0%
GAAGAATGTTCTCCAAAATA+TGG	+	Chr5:90784722-90784741	MsG0580029038.01.T01:intron	30.0%
TAGGGATTGATTAATGGAAT+TGG	+	Chr5:90786256-90786275	MsG0580029038.01.T01:three_prime_UTR	30.0%
TTGCAACTATGTGTAAAGAA+AGG	+	Chr5:90784954-90784973	MsG0580029038.01.T01:CDS	30.0%
AAAACTAACCTTATGATCGG+TGG	-	Chr5:90785248-90785267	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	90784552	90786672	90784552	ID=MsG0580029038.01;Name=MsG0580029038.01
Chr5	mRNA	90784552	90786672	90784552	ID=MsG0580029038.01.T01;Parent=MsG0580029038.01;Name=MsG0580029038.01.T01;_AED=0.25;_eAED=0.25;_QI=0\|0.25\|0.2\|1\|1\|1\|5\|516\|221
Chr5	exon	90784552	90784692	90784552	ID=MsG0580029038.01.T01:exon:49172;Parent=MsG0580029038.01.T01
Chr5	exon	90784953	90785065	90784953	ID=MsG0580029038.01.T01:exon:49173;Parent=MsG0580029038.01.T01
Chr5	exon	90785175	90785258	90785175	ID=MsG0580029038.01.T01:exon:49174;Parent=MsG0580029038.01.T01
Chr5	exon	90785348	90785427	90785348	ID=MsG0580029038.01.T01:exon:49175;Parent=MsG0580029038.01.T01
Chr5	exon	90785909	90786672	90785909	ID=MsG0580029038.01.T01:exon:49176;Parent=MsG0580029038.01.T01
Chr5	CDS	90784552	90784692	90784552	ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5	CDS	90784953	90785065	90784953	ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5	CDS	90785175	90785258	90785175	ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5	CDS	90785348	90785427	90785348	ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5	CDS	90785909	90786156	90785909	ID=MsG0580029038.01.T01:cds;Parent=MsG0580029038.01.T01
Chr5	three_prime_UTR	90786157	90786672	90786157	ID=MsG0580029038.01.T01:three_prime_utr;Parent=MsG0580029038.01.T01

Gene Sequence

>MsG0580029038.01.T01

CTGGCAGATCCACCGGAGAATAGCCGGAAACGACAGAAGCTAGATCCATCTGTTTCATCACCACCACCGCCACCGCCAGAATGCGAAAACACAGTTGATAGCTGTGAATCAAGTACTGATGAAGAATCAAAGGAAAACGAAGTTGCAACTATGTGTAAAGAAAGGTTGCATGAAATTGTTGAAGAAGAAATAGAGAAAGAGAAGGTTGACTGGAAGTCAACGATGGAGAAGGTTTTATTAGAATGGATGAAGAGAAAATCATTGTTTCTAATTGCGGTGATTCGCGAGCCGTTCTTTGCCGGAACGGCGTTGCCATTCCTCTTTCCACCGATCATAAGCCGGATCGACCCGATGAGTTGGATCGGATTAACAAAGCTGAGGACGTGTGATCTATTGGGATGGTGCAAGAGTGCTTGGAGGGACAATTACTTGAAGCCATATGTTATATCGGAACCGGAGGTAACTATAACGGAGAGGAGTGACGAGGATGAATGTCTGATACTTGCGAGTGATGGCTTATGGGACGTGGTGCAAAACGACACGGCATGTAGGGTGGTGCAGATGTGTCTCAAGGCGGAGAGGACGGTGACTCCGCCGGGGTCTCCGGGAAGTGAAGTGGCGGGAAAGGGTCAGATAAGGCGTGTTCGGATGCCTCAATTTTGTTGA

Protein sequence

>MsG0580029038.01.T01

LADPPENSRKRQKLDPSVSSPPPPPPECENTVDSCESSTDEESKENEVATMCKERLHEIVEEEIEKEKVDWKSTMEKVLLEWMKRKSLFLIAVIREPFFAGTALPFLFPPIISRIDPMSWIGLTKLRTCDLLGWCKSAWRDNYLKPYVISEPEVTITERSDEDECLILASDGLWDVVQNDTACRVVQMCLKAERTVTPPGSPGSEVAGKGQIRRVRMPQFC*