AlfalfaGEDB | MsG0680030383.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030383.01

KEGG: K11790
GO: GO:0005515
PFAM: PF00400

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030383.01.T01	XP_003618155.1	93.346	526	13	2	1	526	1	504	0	998

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030383.01.T01	Q5ZJW8	35.263	380	199	8	60	418	43	396	1.59E-62	220

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030383.01.T01	G7KQ08	93.346	526	13	2	1	526	1	504	0.0	998

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001293.01	MsG0680030383.01	0.825207	5.315211e-54	4.813173e-51
MsG0180002397.01	MsG0680030383.01	0.842198	2.993668e-58	4.504500e-55
MsG0180003658.01	MsG0680030383.01	0.806833	6.787271e-50	3.721576e-47
MsG0180003698.01	MsG0680030383.01	0.800859	1.182615e-48	5.565931e-46
MsG0180003857.01	MsG0680030383.01	0.831891	1.290620e-55	1.419721e-52
MsG0180004185.01	MsG0680030383.01	0.812149	4.901348e-51	3.092257e-48
MsG0180004299.01	MsG0680030383.01	0.833450	5.297767e-56	6.103390e-53
MsG0180004538.01	MsG0680030383.01	0.835373	1.742300e-56	2.126524e-53
MsG0180004583.01	MsG0680030383.01	0.814307	1.647223e-51	1.101403e-48
MsG0180006133.01	MsG0680030383.01	0.820517	6.578590e-53	5.216400e-50

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PPI

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Gene1	Gene2	Type
MsG0780038729.01	MsG0680030383.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030383.01.T01	MTR_6g005220	93.346	526	13	2	1	526	1	504	0.0	998
MsG0680030383.01.T01	MTR_6g005920	79.048	420	49	4	109	526	38	420	0.0	613
MsG0680030383.01.T01	MTR_7g086360	28.000	250	132	9	118	363	96	301	2.48e-16	80.9
MsG0680030383.01.T01	MTR_3g075400	24.074	270	163	7	141	407	278	508	8.83e-12	67.8
MsG0680030383.01.T01	MTR_4g104380	23.247	271	164	9	141	407	283	513	4.07e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030383.01.T01	AT3G27640	46.481	540	249	9	1	525	1	515	6.72e-148	434
MsG0680030383.01.T01	AT3G27640	46.481	540	249	9	1	525	20	534	1.18e-147	434
MsG0680030383.01.T01	AT2G43770	27.711	249	132	9	119	363	95	299	1.15e-16	82.0

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Find 108 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTTGGTTCCACTTG+AGG	0.505140	6:-1381802	None:intergenic
AAACGATGTTAGATGCATCG+GGG	0.767496	6:-1381646	None:intergenic
AAAGACCTAATTACGATGGA+TGG	0.451394	6:+1378924	MsG0680030383.01.T01:CDS
AACTACAATTCTAATAGACG+TGG	0.672306	6:+1380481	MsG0680030383.01.T01:CDS
AACTGCGTTTATTCCATATA+TGG	0.270324	6:-1382073	None:intergenic
AAGAACAGATGTAACACTAT+TGG	0.392621	6:-1380783	None:intergenic
AAGACCTAATTACGATGGAT+GGG	0.570767	6:+1378925	MsG0680030383.01.T01:CDS
AAGTGTCTTGGAGTGTTGAC+AGG	0.459131	6:+1380250	MsG0680030383.01.T01:CDS
AAGTTTCCATAGCCACTGCT+GGG	0.538834	6:+1380819	MsG0680030383.01.T01:CDS
AATACACTTCAACTTGAAAA+GGG	0.432531	6:+1381473	MsG0680030383.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGCTCTGCAATTTAAA+AGG	-	Chr6:1380047-1380066	None:intergenic	30.0%
AACTACAATTCTAATAGACG+TGG	+	Chr6:1380481-1380500	MsG0680030383.01.T01:CDS	30.0%
AACTGCGTTTATTCCATATA+TGG	-	Chr6:1382076-1382095	None:intergenic	30.0%
AAGAACAGATGTAACACTAT+TGG	-	Chr6:1380786-1380805	None:intergenic	30.0%
AATACTATTTAGGAGGATAC+CGG	-	Chr6:1381368-1381387	None:intergenic	30.0%
ACAAGCTCTGCAATTTAAAA+GGG	-	Chr6:1380046-1380065	None:intergenic	30.0%
AGTTTATATACAACGAGTCT+GGG	+	Chr6:1381059-1381078	MsG0680030383.01.T01:intron	30.0%
ATACACTTCAACTTGAAAAG+GGG	+	Chr6:1381474-1381493	MsG0680030383.01.T01:CDS	30.0%
ATAGTGTTACATCTGTTCTT+TGG	+	Chr6:1380786-1380805	MsG0680030383.01.T01:CDS	30.0%
CAATCAACTACTCTATAGTT+TGG	+	Chr6:1381721-1381740	MsG0680030383.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	1378741	1382442	1378741	ID=MsG0680030383.01;Name=MsG0680030383.01
Chr6	mRNA	1378741	1382442	1378741	ID=MsG0680030383.01.T01;Parent=MsG0680030383.01;Name=MsG0680030383.01.T01;_AED=0.32;_eAED=0.35;_QI=0\|0\|0\|1\|0.93\|0.87\|16\|0\|526
Chr6	exon	1378741	1378811	1378741	ID=MsG0680030383.01.T01:exon:2542;Parent=MsG0680030383.01.T01
Chr6	exon	1378886	1379030	1378886	ID=MsG0680030383.01.T01:exon:2543;Parent=MsG0680030383.01.T01
Chr6	exon	1379133	1379241	1379133	ID=MsG0680030383.01.T01:exon:2544;Parent=MsG0680030383.01.T01
Chr6	exon	1379617	1379681	1379617	ID=MsG0680030383.01.T01:exon:2545;Parent=MsG0680030383.01.T01
Chr6	exon	1379791	1379859	1379791	ID=MsG0680030383.01.T01:exon:2546;Parent=MsG0680030383.01.T01
Chr6	exon	1380223	1380319	1380223	ID=MsG0680030383.01.T01:exon:2547;Parent=MsG0680030383.01.T01
Chr6	exon	1380425	1380518	1380425	ID=MsG0680030383.01.T01:exon:2548;Parent=MsG0680030383.01.T01
Chr6	exon	1380637	1380700	1380637	ID=MsG0680030383.01.T01:exon:2549;Parent=MsG0680030383.01.T01
Chr6	exon	1380776	1380852	1380776	ID=MsG0680030383.01.T01:exon:2550;Parent=MsG0680030383.01.T01
Chr6	exon	1380948	1381017	1380948	ID=MsG0680030383.01.T01:exon:2551;Parent=MsG0680030383.01.T01
Chr6	exon	1381291	1381367	1381291	ID=MsG0680030383.01.T01:exon:2552;Parent=MsG0680030383.01.T01
Chr6	exon	1381460	1381544	1381460	ID=MsG0680030383.01.T01:exon:2553;Parent=MsG0680030383.01.T01
Chr6	exon	1381635	1381703	1381635	ID=MsG0680030383.01.T01:exon:2554;Parent=MsG0680030383.01.T01
Chr6	exon	1381793	1381860	1381793	ID=MsG0680030383.01.T01:exon:2555;Parent=MsG0680030383.01.T01
Chr6	exon	1381934	1381982	1381934	ID=MsG0680030383.01.T01:exon:2556;Parent=MsG0680030383.01.T01
Chr6	exon	1382071	1382442	1382071	ID=MsG0680030383.01.T01:exon:2557;Parent=MsG0680030383.01.T01
Chr6	CDS	1378741	1378811	1378741	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1378886	1379030	1378886	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1379133	1379241	1379133	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1379617	1379681	1379617	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1379791	1379859	1379791	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1380223	1380319	1380223	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1380425	1380518	1380425	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1380637	1380700	1380637	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1380776	1380852	1380776	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1380948	1381017	1380948	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1381291	1381367	1381291	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1381460	1381544	1381460	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1381635	1381703	1381635	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1381793	1381860	1381793	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1381934	1381982	1381934	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01
Chr6	CDS	1382071	1382442	1382071	ID=MsG0680030383.01.T01:cds;Parent=MsG0680030383.01.T01

Gene Sequence

>MsG0680030383.01.T01

ATGGCTCCTCGAAAATCTCAATCCTTCTTCAACCTCACAACTTCACGCGAGCTCAATTCCTTTCAAGGTCCGTTTTTTTTTTTTGTTGTTGTTGTTGTTACAGTTCGAAAAAGACCTAATTACGATGGATGGGTTCACGGATTCTTCGATGTTGGAGCTGTAGCTACTCAGCATAACGGTGAAGATGTTGTTCCTCTTGCTCTTTCGTTTGCTAAGACTTCGAAATTTTGTCATATTCTTGCTTTGTCTAATGAGGAGGGATATGTTAGCTTTTTTGATACTCGCCGAAAATTCGCGGTGCCTCAGTGTCTAGAAAGAAATGCAGAGGAAGCTAGGATTTGTGAATGGAGTTCGCATAATAATGCAGTTTTTGATGTCAATTGGATTAAGTGTCTTAAATTGGTTTACATATGGTTGCAGGATGATACACAGATCCTCACTGCTTCTGGTGATCAAACGGTTAAGGTATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTGACAGGGCACACAGGAAGTGTGAAATCTATTTCTTCTCATCCAACTAATCCCGATATTTTAGTCTCTGGTTCAAGAGATGGATCTTTTCGTCTTTGGGACTTAAGATGTAACTACAATTCTAATAGACGTGGAGAAGTTAGCATATGTTCAACGGATGTTGTCAATGGAGCACATATTCTGTATCAAGGACTACGACCAAGGAGGGGCAAGGTTGCTTCCAATAGTGTTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGCTGGGGCAGTAAATAGTGTGCTGAAGTTCTGGGATACCAGAAATTTAAAAAGTATTGTCACACAAGCATGTCCTGAACCAGGAAAGCAAAGATTACACGGTATATCTAGCTTGTCCCAAGATGACAGTGGACTGTTGCTTTCTGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGAAAAGGGGGCTTTAAGATACTTTGAAGGAGGTCGTATTGAATCATTTTTTATTAAGGCTGCGATTAGCCCCGATGCATCTAACATCGTTTGTGGTTCTAGTAATGCAAAAGCATATGTTTGGCAGGTTGACAAGCCTCAAGTGGAACCAACTATTTTGAAGAGTCATTACGAGGAAGTTACTGCAGTTGACTGGTGCCGGTCTGACAATGGAATATTAGCAACTGCTTCTGATGATTTCTCAATCCATATATGGAATAAACGCAGTTATGTTACAACAACAAAGACTCCATTTTCCATCCGAAGAAGGGTTATGGCCATACCTAGAACAGAGTGCAAAATGCTACTAGACAATGAAGAAACTTGTCCTAAGTCAAGTGACTATGGTCTACTATCCAATGAAGAACCACATGACCCAGTAAAGTCAGCCACTCCAATCACACCACCTAAAACAACTACATCTGAAGGCCACAAGAACCAGCTTTCATCAGAATTTGATCTAACCATATCTCCTAAAAAAACTCCAGAGTCTGCTTTGAAGAGCCCTTCGTCTGTATTGAATCCACCGCCTTCCCTAAAGAGAACTATTCGGGACTACTTTGTAGCATCTTCTTGA

Protein sequence

>MsG0680030383.01.T01

MAPRKSQSFFNLTTSRELNSFQGPFFFFVVVVVTVRKRPNYDGWVHGFFDVGAVATQHNGEDVVPLALSFAKTSKFCHILALSNEEGYVSFFDTRRKFAVPQCLERNAEEARICEWSSHNNAVFDVNWIKCLKLVYIWLQDDTQILTASGDQTVKVWDVQEKKCLGVLTGHTGSVKSISSHPTNPDILVSGSRDGSFRLWDLRCNYNSNRRGEVSICSTDVVNGAHILYQGLRPRRGKVASNSVTSVLWLKDQVSIATAGAVNSVLKFWDTRNLKSIVTQACPEPGKQRLHGISSLSQDDSGLLLSASCMDSRVYLYNTLQLEKGALRYFEGGRIESFFIKAAISPDASNIVCGSSNAKAYVWQVDKPQVEPTILKSHYEEVTAVDWCRSDNGILATASDDFSIHIWNKRSYVTTTKTPFSIRRRVMAIPRTECKMLLDNEETCPKSSDYGLLSNEEPHDPVKSATPITPPKTTTSEGHKNQLSSEFDLTISPKKTPESALKSPSSVLNPPPSLKRTIRDYFVASS*