Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036069.01.T01 | XP_024627190.1 | 97 | 200 | 6 | 0 | 16 | 215 | 148 | 347 | 3.56E-137 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036069.01.T01 | Q9C942 | 39.024 | 205 | 117 | 4 | 13 | 213 | 129 | 329 | 2.20E-40 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036069.01.T01 | G7ZY18 | 96.517 | 201 | 7 | 0 | 15 | 215 | 146 | 346 | 2.66e-137 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048849.01 | MsG0780036069.01 | 0.803181 | 3.941312e-49 | 1.967548e-46 |
| MsG0080049069.01 | MsG0780036069.01 | 0.830735 | 2.484190e-55 | 2.640259e-52 |
| MsG0180000026.01 | MsG0780036069.01 | 0.820973 | 5.166614e-53 | 4.149744e-50 |
| MsG0280006306.01 | MsG0780036069.01 | -0.812353 | 4.425790e-51 | 2.807651e-48 |
| MsG0280006418.01 | MsG0780036069.01 | -0.833396 | 5.464676e-56 | 6.285339e-53 |
| MsG0280010604.01 | MsG0780036069.01 | -0.800100 | 1.688652e-48 | 7.795534e-46 |
| MsG0680033459.01 | MsG0780036069.01 | 0.803707 | 3.065975e-49 | 1.551345e-46 |
| MsG0480020025.01 | MsG0780036069.01 | 0.805595 | 1.237452e-49 | 6.573124e-47 |
| MsG0480021201.01 | MsG0780036069.01 | 0.803750 | 3.002772e-49 | 1.521137e-46 |
| MsG0480022872.01 | MsG0780036069.01 | -0.803886 | 2.814507e-49 | 1.430800e-46 |
| MsG0480023660.01 | MsG0780036069.01 | 0.812638 | 3.833902e-51 | 2.450552e-48 |
| MsG0480023877.01 | MsG0780036069.01 | 0.810330 | 1.216319e-50 | 7.310803e-48 |
| MsG0580025467.01 | MsG0780036069.01 | 0.816884 | 4.394004e-52 | 3.151719e-49 |
| MsG0580025827.01 | MsG0780036069.01 | 0.806593 | 7.628236e-50 | 4.156699e-47 |
| MsG0380017891.01 | MsG0780036069.01 | -0.803942 | 2.740031e-49 | 1.394970e-46 |
| MsG0480018426.01 | MsG0780036069.01 | 0.807528 | 4.837626e-50 | 2.700785e-47 |
| MsG0580027955.01 | MsG0780036069.01 | 0.820261 | 7.531722e-53 | 5.930324e-50 |
| MsG0280007647.01 | MsG0780036069.01 | 0.823348 | 1.453679e-53 | 1.248404e-50 |
| MsG0280008660.01 | MsG0780036069.01 | -0.813896 | 2.029377e-51 | 1.341853e-48 |
| MsG0280008928.01 | MsG0780036069.01 | 0.826826 | 2.191784e-54 | 2.078404e-51 |
| MsG0280008929.01 | MsG0780036069.01 | 0.804630 | 1.969763e-49 | 1.020628e-46 |
| MsG0780036069.01 | MsG0780036071.01 | 0.832002 | 1.211690e-55 | 1.337103e-52 |
| MsG0780036069.01 | MsG0780040295.01 | -0.802791 | 4.743409e-49 | 2.344663e-46 |
| MsG0780036069.01 | MsG0880042987.01 | -0.808255 | 3.388479e-50 | 1.928237e-47 |
| MsG0780036069.01 | MsG0880047763.01 | 0.800670 | 1.292259e-48 | 6.052766e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004855.01 | MsG0780036069.01 | PPI |
| MsG0080048214.01 | MsG0780036069.01 | PPI |
| MsG0180006172.01 | MsG0780036069.01 | PPI |
| MsG0080048214.01 | MsG0780036069.01 | PPI |
| MsG0780036069.01 | MsG0180004858.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036069.01.T01 | MTR_7g007260 | 96.517 | 201 | 7 | 0 | 15 | 215 | 146 | 346 | 6.74e-141 | 397 |
| MsG0780036069.01.T01 | MTR_7g007260 | 91.000 | 200 | 5 | 1 | 16 | 215 | 148 | 334 | 1.41e-126 | 361 |
| MsG0780036069.01.T01 | MTR_7g007260 | 90.547 | 201 | 6 | 1 | 15 | 215 | 146 | 333 | 2.25e-126 | 360 |
| MsG0780036069.01.T01 | MTR_6g018490 | 71.212 | 198 | 57 | 0 | 15 | 212 | 145 | 342 | 2.08e-103 | 302 |
| MsG0780036069.01.T01 | MTR_6g025610 | 71.717 | 198 | 56 | 0 | 15 | 212 | 135 | 332 | 2.44e-103 | 302 |
| MsG0780036069.01.T01 | MTR_6g084420 | 67.179 | 195 | 63 | 1 | 15 | 208 | 145 | 339 | 3.54e-94 | 279 |
| MsG0780036069.01.T01 | MTR_5g056550 | 56.701 | 194 | 84 | 0 | 15 | 208 | 199 | 392 | 1.67e-75 | 233 |
| MsG0780036069.01.T01 | MTR_1g110670 | 56.771 | 192 | 83 | 0 | 15 | 206 | 165 | 356 | 2.43e-75 | 231 |
| MsG0780036069.01.T01 | MTR_1g088470 | 51.020 | 196 | 96 | 0 | 14 | 209 | 98 | 293 | 4.29e-67 | 209 |
| MsG0780036069.01.T01 | MTR_7g108770 | 52.198 | 182 | 87 | 0 | 27 | 208 | 110 | 291 | 2.29e-65 | 205 |
| MsG0780036069.01.T01 | MTR_1g115535 | 48.113 | 212 | 106 | 2 | 1 | 208 | 87 | 298 | 1.59e-60 | 192 |
| MsG0780036069.01.T01 | MTR_1g115535 | 48.113 | 212 | 106 | 2 | 1 | 208 | 83 | 294 | 1.68e-60 | 192 |
| MsG0780036069.01.T01 | MTR_5g056550 | 49.215 | 191 | 64 | 1 | 15 | 205 | 199 | 356 | 1.05e-54 | 178 |
| MsG0780036069.01.T01 | MTR_4g089170 | 43.077 | 195 | 111 | 0 | 11 | 205 | 127 | 321 | 7.61e-54 | 175 |
| MsG0780036069.01.T01 | MTR_4g127220 | 38.049 | 205 | 120 | 3 | 15 | 215 | 121 | 322 | 2.84e-41 | 143 |
| MsG0780036069.01.T01 | MTR_1g095110 | 38.220 | 191 | 115 | 3 | 22 | 210 | 129 | 318 | 3.36e-41 | 142 |
| MsG0780036069.01.T01 | MTR_6g071475 | 34.536 | 194 | 114 | 7 | 15 | 205 | 205 | 388 | 7.82e-21 | 89.7 |
| MsG0780036069.01.T01 | MTR_1g110680 | 39.423 | 104 | 59 | 1 | 102 | 205 | 3 | 102 | 1.17e-18 | 78.2 |
| MsG0780036069.01.T01 | MTR_3g109870 | 31.282 | 195 | 121 | 5 | 16 | 207 | 170 | 354 | 2.35e-17 | 79.7 |
| MsG0780036069.01.T01 | MTR_5g056550 | 58.333 | 48 | 20 | 0 | 15 | 62 | 199 | 246 | 1.85e-13 | 68.2 |
| MsG0780036069.01.T01 | MTR_5g056550 | 59.574 | 47 | 19 | 0 | 15 | 61 | 199 | 245 | 5.50e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036069.01.T01 | AT5G16120 | 73.134 | 201 | 54 | 0 | 14 | 214 | 146 | 346 | 7.30e-108 | 314 |
| MsG0780036069.01.T01 | AT5G16120 | 73.134 | 201 | 54 | 0 | 14 | 214 | 146 | 346 | 7.30e-108 | 314 |
| MsG0780036069.01.T01 | AT5G16120 | 73.134 | 201 | 54 | 0 | 14 | 214 | 164 | 364 | 1.47e-107 | 314 |
| MsG0780036069.01.T01 | AT5G16120 | 73.134 | 201 | 54 | 0 | 14 | 214 | 178 | 378 | 2.09e-107 | 314 |
| MsG0780036069.01.T01 | AT1G77420 | 56.989 | 186 | 80 | 0 | 20 | 205 | 191 | 376 | 3.82e-73 | 226 |
| MsG0780036069.01.T01 | AT3G62860 | 50.521 | 192 | 95 | 0 | 14 | 205 | 55 | 246 | 1.06e-65 | 205 |
| MsG0780036069.01.T01 | AT2G47630 | 51.562 | 192 | 93 | 0 | 14 | 205 | 55 | 246 | 3.30e-65 | 204 |
| MsG0780036069.01.T01 | AT3G62860 | 50.521 | 192 | 95 | 0 | 14 | 205 | 98 | 289 | 4.85e-65 | 204 |
| MsG0780036069.01.T01 | AT2G47630 | 51.562 | 192 | 93 | 0 | 14 | 205 | 75 | 266 | 4.97e-65 | 204 |
| MsG0780036069.01.T01 | AT2G47630 | 51.562 | 192 | 93 | 0 | 14 | 205 | 100 | 291 | 1.38e-64 | 204 |
| MsG0780036069.01.T01 | AT2G39420 | 51.042 | 192 | 94 | 0 | 14 | 205 | 101 | 292 | 1.21e-61 | 195 |
| MsG0780036069.01.T01 | AT1G11090 | 45.960 | 198 | 107 | 0 | 11 | 208 | 118 | 315 | 4.44e-60 | 191 |
| MsG0780036069.01.T01 | AT2G39410 | 46.154 | 195 | 105 | 0 | 14 | 208 | 101 | 295 | 1.13e-54 | 177 |
| MsG0780036069.01.T01 | AT2G39400 | 46.154 | 195 | 105 | 0 | 14 | 208 | 95 | 289 | 3.28e-54 | 176 |
| MsG0780036069.01.T01 | AT3G55180 | 45.641 | 195 | 106 | 0 | 14 | 208 | 96 | 290 | 3.96e-54 | 176 |
| MsG0780036069.01.T01 | AT3G55190 | 43.575 | 179 | 100 | 1 | 27 | 204 | 114 | 292 | 3.03e-46 | 155 |
| MsG0780036069.01.T01 | AT5G14980 | 37.097 | 186 | 115 | 2 | 24 | 208 | 132 | 316 | 2.38e-42 | 145 |
| MsG0780036069.01.T01 | AT1G52760 | 39.024 | 205 | 117 | 4 | 13 | 213 | 129 | 329 | 2.24e-41 | 143 |
| MsG0780036069.01.T01 | AT5G19290 | 36.264 | 182 | 114 | 2 | 24 | 204 | 133 | 313 | 5.54e-41 | 142 |
| MsG0780036069.01.T01 | AT2G39400 | 41.045 | 134 | 79 | 0 | 14 | 147 | 95 | 228 | 3.18e-27 | 104 |
| MsG0780036069.01.T01 | AT1G73480 | 34.197 | 193 | 116 | 5 | 15 | 205 | 277 | 460 | 9.69e-22 | 92.8 |
| MsG0780036069.01.T01 | AT1G18360 | 31.443 | 194 | 120 | 5 | 15 | 205 | 196 | 379 | 4.00e-18 | 82.0 |
| MsG0780036069.01.T01 | AT5G11650 | 31.088 | 193 | 118 | 7 | 16 | 204 | 194 | 375 | 3.59e-16 | 76.6 |
Find 46 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATATTGAGATTGTTAT+TGG | 0.139036 | 7:+2070716 | MsG0780036069.01.T01:three_prime_UTR |
| CCCATGCCTTAGGTTGTTTA+AGG | 0.160845 | 7:-2069153 | None:intergenic |
| CTTGGAAGAGATTTCAATTC+TGG | 0.175905 | 7:-2069082 | None:intergenic |
| TCTCTTCCAAGCTTCCTCTT+TGG | 0.296531 | 7:+2069094 | MsG0780036069.01.T01:CDS |
| TTTGTAAGCAACAACATTAT+AGG | 0.319531 | 7:-2069839 | None:intergenic |
| TTGCCATTGCTAATCCTTCA+TGG | 0.351070 | 7:+2070472 | MsG0780036069.01.T01:CDS |
| CTATATCCTTACAAAAGGTT+TGG | 0.365149 | 7:+2069039 | MsG0780036069.01.T01:CDS |
| ACTTGGATTATCATTTCATC+AGG | 0.402873 | 7:-2070613 | None:intergenic |
| TGCCATTGCTAATCCTTCAT+GGG | 0.412278 | 7:+2070473 | MsG0780036069.01.T01:CDS |
| AGATTTGAAGAAGAGAGAAA+TGG | 0.427655 | 7:+2069413 | MsG0780036069.01.T01:CDS |
| ATAACAATCTCAATATTCAT+AGG | 0.428139 | 7:-2070713 | None:intergenic |
| GCTTACCATTCTCTTCTTGA+GGG | 0.433960 | 7:+2070586 | MsG0780036069.01.T01:CDS |
| TGCTTACCATTCTCTTCTTG+AGG | 0.435129 | 7:+2070585 | MsG0780036069.01.T01:CDS |
| CAAGAAGCTTAAACTTTACA+AGG | 0.438282 | 7:+2070561 | MsG0780036069.01.T01:CDS |
| CTTCCTCTTTGGACAATCCA+TGG | 0.443316 | 7:+2069105 | MsG0780036069.01.T01:CDS |
| TCAAGAAATAGAAAAGAGAT+TGG | 0.449597 | 7:+2069906 | MsG0780036069.01.T01:CDS |
| CAAAACTATATCCTTACAAA+AGG | 0.452454 | 7:+2069034 | MsG0780036069.01.T01:CDS |
| ATGGCGCCATCCCATGCCTT+AGG | 0.492346 | 7:-2069163 | None:intergenic |
| TTGCTAGCTCAGATACTCAT+TGG | 0.501169 | 7:+2069324 | MsG0780036069.01.T01:CDS |
| GATTGTCCAAAGAGGAAGCT+TGG | 0.503541 | 7:-2069100 | None:intergenic |
| TTCCTCTTTGGACAATCCAT+GGG | 0.527323 | 7:+2069106 | MsG0780036069.01.T01:CDS |
| ACACATCGGTGCAACAAGAA+TGG | 0.539358 | 7:-2069182 | None:intergenic |
| TATTGAGATTGTTATTGGCA+TGG | 0.548855 | 7:+2070721 | MsG0780036069.01.T01:three_prime_UTR |
| ACCTTAAACAACCTAAGGCA+TGG | 0.551832 | 7:+2069152 | MsG0780036069.01.T01:CDS |
| TATTGAGATTGTTATTGACA+TGG | 0.554349 | 7:+2070799 | MsG0780036069.01.T01:three_prime_UTR |
| GCCATTGCTAATCCTTCATG+GGG | 0.559750 | 7:+2070474 | MsG0780036069.01.T01:CDS |
| GATGCACCTTAAACAACCTA+AGG | 0.561834 | 7:+2069147 | MsG0780036069.01.T01:CDS |
| CAATATCAGCCTCCCCATGA+AGG | 0.562301 | 7:-2070486 | None:intergenic |
| AAGATGAATGTTTCAAGCTG+TGG | 0.564559 | 7:-2070666 | None:intergenic |
| CTCTTTGGACAATCCATGGG+AGG | 0.564768 | 7:+2069109 | MsG0780036069.01.T01:CDS |
| ACAAAGATAAACCGCGGTTG+TGG | 0.567389 | 7:+2069857 | MsG0780036069.01.T01:CDS |
| TAAAGCAACAGCTCCTCCCA+TGG | 0.568099 | 7:-2069122 | None:intergenic |
| AGTATCTGAGCTAGCAACCA+TGG | 0.584270 | 7:-2069318 | None:intergenic |
| GTTCACCCTCAAGAAGAGAA+TGG | 0.585405 | 7:-2070591 | None:intergenic |
| CCTTAAACAACCTAAGGCAT+GGG | 0.589776 | 7:+2069153 | MsG0780036069.01.T01:CDS |
| TCCACAGAAGAATTTAGCAG+AGG | 0.601555 | 7:+2069380 | MsG0780036069.01.T01:CDS |
| ATTGCTAATCCTTCATGGGG+AGG | 0.602643 | 7:+2070477 | MsG0780036069.01.T01:CDS |
| TCCCCATGAAGGATTAGCAA+TGG | 0.609252 | 7:-2070475 | None:intergenic |
| TATGTAGATTGCAGATGACA+TGG | 0.614189 | 7:+2069290 | MsG0780036069.01.T01:intron |
| CAGATGACATGGTTCCTCCA+TGG | 0.625513 | 7:+2069301 | MsG0780036069.01.T01:CDS |
| AAACAACCTAAGGCATGGGA+TGG | 0.626145 | 7:+2069157 | MsG0780036069.01.T01:CDS |
| GCCTCTGCTAAATTCTTCTG+TGG | 0.628167 | 7:-2069381 | None:intergenic |
| CTCCCATGGATTGTCCAAAG+AGG | 0.649020 | 7:-2069108 | None:intergenic |
| TTGCTTACAAAGATAAACCG+CGG | 0.712200 | 7:+2069851 | MsG0780036069.01.T01:CDS |
| TCGACGGCAGTCCACAACCG+CGG | 0.716565 | 7:-2069868 | None:intergenic |
| ATCTGAGCTAGCAACCATGG+AGG | 0.731031 | 7:-2069315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTGATAATTTAAATTT+TGG | + | Chr7:2069468-2069487 | MsG0780036069.01.T01:intron | 10.0% |
| !! | AAAAAAATTACTTTACACAT+CGG | - | Chr7:2069199-2069218 | None:intergenic | 15.0% |
| !! | AAACAAAAATAATACGATAT+TGG | - | Chr7:2069454-2069473 | None:intergenic | 15.0% |
| !!! | TTTTTAGTGATATCATTTTA+TGG | + | Chr7:2070635-2070654 | MsG0780036069.01.T01:CDS | 15.0% |
| !! | AAATGATATCACTAAAAACT+TGG | - | Chr7:2070633-2070652 | None:intergenic | 20.0% |
| !! | ATAACAATCTCAATATTCAT+AGG | - | Chr7:2070716-2070735 | None:intergenic | 20.0% |
| !! | ATCAAATGGAAAAAGAAAAA+CGG | - | Chr7:2070241-2070260 | None:intergenic | 20.0% |
| !! | ATCTAAACATACATATTTCA+AGG | + | Chr7:2069691-2069710 | MsG0780036069.01.T01:intron | 20.0% |
| !! | ATGAATATTGAGATTGTTAT+TGG | + | Chr7:2070716-2070735 | MsG0780036069.01.T01:three_prime_UTR | 20.0% |
| !!! | ACCTAAAATTAAATTTTTCC+GGG | - | Chr7:2069224-2069243 | None:intergenic | 20.0% |
| !!! | AGTGAATAATTAAACTTTTC+TGG | + | Chr7:2069799-2069818 | MsG0780036069.01.T01:intron | 20.0% |
| !!! | CACCTAAAATTAAATTTTTC+CGG | - | Chr7:2069225-2069244 | None:intergenic | 20.0% |
| !!! | GTAAAGTAATTTTTTTTTCC+CGG | + | Chr7:2069203-2069222 | MsG0780036069.01.T01:intron | 20.0% |
| !!! | TAAAGATGTCATACTTTTAT+TGG | + | Chr7:2070293-2070312 | MsG0780036069.01.T01:intron | 20.0% |
| !!! | TGAAAAACAATAATTGCTTT+TGG | - | Chr7:2069735-2069754 | None:intergenic | 20.0% |
| ! | ACAAGAACTAATATATTTGC+AGG | - | Chr7:2069496-2069515 | None:intergenic | 25.0% |
| ! | CAAAACTATATCCTTACAAA+AGG | + | Chr7:2069034-2069053 | MsG0780036069.01.T01:CDS | 25.0% |
| ! | GATTTAAGTCAGAAATCAAA+TGG | - | Chr7:2070255-2070274 | None:intergenic | 25.0% |
| ! | TCAAGAAATAGAAAAGAGAT+TGG | + | Chr7:2069906-2069925 | MsG0780036069.01.T01:CDS | 25.0% |
| ! | TGAAAAGTGGTATATTTGAA+AGG | - | Chr7:2069540-2069559 | None:intergenic | 25.0% |
| ! | TTTGTAAGCAACAACATTAT+AGG | - | Chr7:2069842-2069861 | None:intergenic | 25.0% |
| !! | CTCATAAAATTTGTTCATGT+TGG | + | Chr7:2069585-2069604 | MsG0780036069.01.T01:intron | 25.0% |
| !!! | AATATACCACTTTTCACTTT+TGG | + | Chr7:2069544-2069563 | MsG0780036069.01.T01:intron | 25.0% |
| !!! | ATTGTTTTGCAATGCATTTA+TGG | + | Chr7:2070019-2070038 | MsG0780036069.01.T01:intron | 25.0% |
| !!! | GTAATGGTTTTGATGATTAT+AGG | + | Chr7:2070444-2070463 | MsG0780036069.01.T01:intron | 25.0% |
| !!! | TCCCGGAAAAATTTAATTTT+AGG | + | Chr7:2069220-2069239 | MsG0780036069.01.T01:intron | 25.0% |
| AATCAGTCTTCAATATTGCA+TGG | - | Chr7:2070406-2070425 | None:intergenic | 30.0% | |
| ACTTGGATTATCATTTCATC+AGG | - | Chr7:2070616-2070635 | None:intergenic | 30.0% | |
| AGATTTGAAGAAGAGAGAAA+TGG | + | Chr7:2069413-2069432 | MsG0780036069.01.T01:CDS | 30.0% | |
| ATGTATGTTTAGATGTTGCT+CGG | - | Chr7:2069685-2069704 | None:intergenic | 30.0% | |
| CAAGAAGCTTAAACTTTACA+AGG | + | Chr7:2070561-2070580 | MsG0780036069.01.T01:CDS | 30.0% | |
| CACTAGAGATTCAAATTGAT+TGG | - | Chr7:2070096-2070115 | None:intergenic | 30.0% | |
| CTATATCCTTACAAAAGGTT+TGG | + | Chr7:2069039-2069058 | MsG0780036069.01.T01:CDS | 30.0% | |
| TTCAAGGACTAAAAAACAAC+AGG | + | Chr7:2069707-2069726 | MsG0780036069.01.T01:intron | 30.0% | |
| ! | AATGAACCAAACCTTTTGTA+AGG | - | Chr7:2069048-2069067 | None:intergenic | 30.0% |
| ! | ACAAGTTGAATTCGAAAGAT+AGG | - | Chr7:2069944-2069963 | None:intergenic | 30.0% |
| ! | TAAAATGTTTTGCTCACTGA+GGG | - | Chr7:2070520-2070539 | None:intergenic | 30.0% |
| ! | TATTGAGATTGTTATTGGCA+TGG | + | Chr7:2070721-2070740 | MsG0780036069.01.T01:three_prime_UTR | 30.0% |
| !! | CTGTTAAGGTTGATATGTAA+TGG | + | Chr7:2070428-2070447 | MsG0780036069.01.T01:intron | 30.0% |
| !! | TGAAGACTGATTTTCTGTTA+AGG | + | Chr7:2070414-2070433 | MsG0780036069.01.T01:intron | 30.0% |
| AAGATGAATGTTTCAAGCTG+TGG | - | Chr7:2070669-2070688 | None:intergenic | 35.0% | |
| ATGCATTGCAAAACAATCCA+AGG | - | Chr7:2070016-2070035 | None:intergenic | 35.0% | |
| CAATGACCAAAAGTGAAAAG+TGG | - | Chr7:2069553-2069572 | None:intergenic | 35.0% | |
| CTTGGAAGAGATTTCAATTC+TGG | - | Chr7:2069085-2069104 | None:intergenic | 35.0% | |
| TATGTAGATTGCAGATGACA+TGG | + | Chr7:2069290-2069309 | MsG0780036069.01.T01:intron | 35.0% | |
| TCGTGACAAGATTCAATTCA+CGG | + | Chr7:2070332-2070351 | MsG0780036069.01.T01:intron | 35.0% | |
| TTAGGTAGTGATTCGTTAGA+AGG | - | Chr7:2070176-2070195 | None:intergenic | 35.0% | |
| TTGCTTACAAAGATAAACCG+CGG | + | Chr7:2069851-2069870 | MsG0780036069.01.T01:CDS | 35.0% | |
| ! | ATCTACATAGATAGAGTGTC+TGG | - | Chr7:2069279-2069298 | None:intergenic | 35.0% |
| ! | GTAAAATGTTTTGCTCACTG+AGG | - | Chr7:2070521-2070540 | None:intergenic | 35.0% |
| ! | TGTGGAACTAACTTTTGCTT+TGG | - | Chr7:2069366-2069385 | None:intergenic | 35.0% |
| !! | CAATTCACGGTTCTGAAAAT+AGG | + | Chr7:2070345-2070364 | MsG0780036069.01.T01:intron | 35.0% |
| !!! | AAGTTTTTTCCTCTTCTCCT+TGG | + | Chr7:2069996-2070015 | MsG0780036069.01.T01:intron | 35.0% |
| !!! | AGTAGTTTTAAGCATCTCGA+CGG | - | Chr7:2069887-2069906 | None:intergenic | 35.0% |
| ACCTTAAACAACCTAAGGCA+TGG | + | Chr7:2069152-2069171 | MsG0780036069.01.T01:CDS | 40.0% | |
| AGTCCTTATGTTGTCTGTAC+TGG | + | Chr7:2069632-2069651 | MsG0780036069.01.T01:intron | 40.0% | |
| ATGCAAAGCTGACAAAAGGT+GGG | - | Chr7:2070212-2070231 | None:intergenic | 40.0% | |
| CAAAACAATCCAAGGAGAAG+AGG | - | Chr7:2070008-2070027 | None:intergenic | 40.0% | |
| CCTTAAACAACCTAAGGCAT+GGG | + | Chr7:2069153-2069172 | MsG0780036069.01.T01:CDS | 40.0% | |
| CTTATGTTGTCTGTACTGGA+GGG | + | Chr7:2069636-2069655 | MsG0780036069.01.T01:intron | 40.0% | |
| GACTATGCAAAGCTGACAAA+AGG | - | Chr7:2070216-2070235 | None:intergenic | 40.0% | |
| GATGCACCTTAAACAACCTA+AGG | + | Chr7:2069147-2069166 | MsG0780036069.01.T01:CDS | 40.0% | |
| GCTTACCATTCTCTTCTTGA+GGG | + | Chr7:2070586-2070605 | MsG0780036069.01.T01:CDS | 40.0% | |
| GTGGGCAATTACACAAGTTT+AGG | - | Chr7:2070194-2070213 | None:intergenic | 40.0% | |
| TATGCAAAGCTGACAAAAGG+TGG | - | Chr7:2070213-2070232 | None:intergenic | 40.0% | |
| TCCACAGAAGAATTTAGCAG+AGG | + | Chr7:2069380-2069399 | MsG0780036069.01.T01:CDS | 40.0% | |
| TGCCATTGCTAATCCTTCAT+GGG | + | Chr7:2070473-2070492 | MsG0780036069.01.T01:CDS | 40.0% | |
| TGCTTACCATTCTCTTCTTG+AGG | + | Chr7:2070585-2070604 | MsG0780036069.01.T01:CDS | 40.0% | |
| TTCCTCTTTGGACAATCCAT+GGG | + | Chr7:2069106-2069125 | MsG0780036069.01.T01:CDS | 40.0% | |
| TTGCCATTGCTAATCCTTCA+TGG | + | Chr7:2070472-2070491 | MsG0780036069.01.T01:CDS | 40.0% | |
| TTGCTAGCTCAGATACTCAT+TGG | + | Chr7:2069324-2069343 | MsG0780036069.01.T01:CDS | 40.0% | |
| AAACAACCTAAGGCATGGGA+TGG | + | Chr7:2069157-2069176 | MsG0780036069.01.T01:CDS | 45.0% | |
| ACAAAGATAAACCGCGGTTG+TGG | + | Chr7:2069857-2069876 | MsG0780036069.01.T01:CDS | 45.0% | |
| ACACATCGGTGCAACAAGAA+TGG | - | Chr7:2069185-2069204 | None:intergenic | 45.0% | |
| AGTATCTGAGCTAGCAACCA+TGG | - | Chr7:2069321-2069340 | None:intergenic | 45.0% | |
| ATTGCTAATCCTTCATGGGG+AGG | + | Chr7:2070477-2070496 | MsG0780036069.01.T01:CDS | 45.0% | |
| CCTCCAGTACAGACAACATA+AGG | - | Chr7:2069638-2069657 | None:intergenic | 45.0% | |
| CCTTATGTTGTCTGTACTGG+AGG | + | Chr7:2069635-2069654 | MsG0780036069.01.T01:intron | 45.0% | |
| CTTCCTCTTTGGACAATCCA+TGG | + | Chr7:2069105-2069124 | MsG0780036069.01.T01:CDS | 45.0% | |
| GATTGTCCAAAGAGGAAGCT+TGG | - | Chr7:2069103-2069122 | None:intergenic | 45.0% | |
| GCCATTGCTAATCCTTCATG+GGG | + | Chr7:2070474-2070493 | MsG0780036069.01.T01:CDS | 45.0% | |
| GCCTCTGCTAAATTCTTCTG+TGG | - | Chr7:2069384-2069403 | None:intergenic | 45.0% | |
| GTTCACCCTCAAGAAGAGAA+TGG | - | Chr7:2070594-2070613 | None:intergenic | 45.0% | |
| TCTCTTCCAAGCTTCCTCTT+TGG | + | Chr7:2069094-2069113 | MsG0780036069.01.T01:CDS | 45.0% | |
| ! | CCCATGCCTTAGGTTGTTTA+AGG | - | Chr7:2069156-2069175 | None:intergenic | 45.0% |
| ! | TCCCCATGAAGGATTAGCAA+TGG | - | Chr7:2070478-2070497 | None:intergenic | 45.0% |
| ATCTGAGCTAGCAACCATGG+AGG | - | Chr7:2069318-2069337 | None:intergenic | 50.0% | |
| CAATATCAGCCTCCCCATGA+AGG | - | Chr7:2070489-2070508 | None:intergenic | 50.0% | |
| CAGATGACATGGTTCCTCCA+TGG | + | Chr7:2069301-2069320 | MsG0780036069.01.T01:CDS | 50.0% | |
| CTCTTTGGACAATCCATGGG+AGG | + | Chr7:2069109-2069128 | MsG0780036069.01.T01:CDS | 50.0% | |
| TAAAGCAACAGCTCCTCCCA+TGG | - | Chr7:2069125-2069144 | None:intergenic | 50.0% | |
| ! | CTCCCATGGATTGTCCAAAG+AGG | - | Chr7:2069111-2069130 | None:intergenic | 50.0% |
| ATGGCGCCATCCCATGCCTT+AGG | - | Chr7:2069166-2069185 | None:intergenic | 60.0% | |
| TCGACGGCAGTCCACAACCG+CGG | - | Chr7:2069871-2069890 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 2069028 | 2070820 | 2069028 | ID=MsG0780036069.01;Name=MsG0780036069.01 |
| Chr7 | mRNA | 2069028 | 2070820 | 2069028 | ID=MsG0780036069.01.T01;Parent=MsG0780036069.01;Name=MsG0780036069.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.75|1|1|1|4|124|215 |
| Chr7 | exon | 2069028 | 2069207 | 2069028 | ID=MsG0780036069.01.T01:exon:15630;Parent=MsG0780036069.01.T01 |
| Chr7 | exon | 2069297 | 2069434 | 2069297 | ID=MsG0780036069.01.T01:exon:15631;Parent=MsG0780036069.01.T01 |
| Chr7 | exon | 2069835 | 2069933 | 2069835 | ID=MsG0780036069.01.T01:exon:15632;Parent=MsG0780036069.01.T01 |
| Chr7 | exon | 2070466 | 2070820 | 2070466 | ID=MsG0780036069.01.T01:exon:15633;Parent=MsG0780036069.01.T01 |
| Chr7 | CDS | 2069028 | 2069207 | 2069028 | ID=MsG0780036069.01.T01:cds;Parent=MsG0780036069.01.T01 |
| Chr7 | CDS | 2069297 | 2069434 | 2069297 | ID=MsG0780036069.01.T01:cds;Parent=MsG0780036069.01.T01 |
| Chr7 | CDS | 2069835 | 2069933 | 2069835 | ID=MsG0780036069.01.T01:cds;Parent=MsG0780036069.01.T01 |
| Chr7 | CDS | 2070466 | 2070696 | 2070466 | ID=MsG0780036069.01.T01:cds;Parent=MsG0780036069.01.T01 |
| Chr7 | three_prime_UTR | 2070697 | 2070820 | 2070697 | ID=MsG0780036069.01.T01:three_prime_utr;Parent=MsG0780036069.01.T01 |
| Gene Sequence |
| Protein sequence |
