AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037284.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037284.01.T02 MTR_1g108765 90.517 232 19 1 1 229 328 559 5.83e-147 422
MsG0780037284.01.T02 MTR_1g108770 90.830 229 18 1 1 226 331 559 2.13e-146 420
MsG0780037284.01.T02 MTR_3g035730 71.300 223 61 1 1 220 268 490 2.79e-110 326
MsG0780037284.01.T02 MTR_4g451275 71.300 223 61 1 1 220 268 490 2.82e-110 326
MsG0780037284.01.T02 MTR_7g021780 72.273 220 58 1 1 217 268 487 2.11e-109 327
MsG0780037284.01.T02 MTR_1829s0010 72.857 210 54 1 1 207 13 222 6.07e-109 317
MsG0780037284.01.T02 MTR_0002s0650 70.507 217 59 2 1 214 268 482 5.42e-104 313
MsG0780037284.01.T02 MTR_7g033765 69.744 195 56 1 1 192 268 462 1.34e-90 278
MsG0780037284.01.T02 MTR_7g033755 63.594 217 53 1 1 217 196 386 1.41e-90 276
MsG0780037284.01.T02 MTR_2g066870 53.394 221 92 3 1 219 200 411 1.38e-71 224
MsG0780037284.01.T02 MTR_1g076100 63.750 80 26 1 46 122 5 84 1.29e-28 103
MsG0780037284.01.T02 MTR_5g090750 71.429 56 16 0 126 181 21 76 3.08e-21 84.7
MsG0780037284.01.T02 MTR_2g009560 41.667 72 39 1 147 218 3 71 4.10e-13 63.5
MsG0780037284.01.T05 MTR_1g108765 88.945 199 19 1 1 196 361 559 3.52e-121 355
MsG0780037284.01.T05 MTR_1g108770 89.286 196 18 1 1 193 364 559 1.37e-120 353
MsG0780037284.01.T05 MTR_3g035730 68.421 190 57 1 1 187 301 490 3.34e-87 265
MsG0780037284.01.T05 MTR_4g451275 68.421 190 57 1 1 187 301 490 3.73e-87 265
MsG0780037284.01.T05 MTR_7g021780 69.519 187 54 1 1 184 301 487 2.38e-86 266
MsG0780037284.01.T05 MTR_1829s0010 70.056 177 50 1 1 174 46 222 1.16e-85 257
MsG0780037284.01.T05 MTR_0002s0650 67.391 184 55 2 1 181 301 482 5.72e-81 252
MsG0780037284.01.T05 MTR_7g033755 69.872 156 47 0 29 184 231 386 5.24e-73 229
MsG0780037284.01.T05 MTR_7g033765 66.049 162 52 1 1 159 301 462 1.46e-67 217
MsG0780037284.01.T05 MTR_2g066870 47.340 188 88 3 1 186 233 411 2.23e-49 166
MsG0780037284.01.T05 MTR_1g076100 63.750 80 26 1 13 89 5 84 5.74e-29 103
MsG0780037284.01.T05 MTR_5g090750 71.429 56 16 0 93 148 21 76 1.19e-21 85.1
MsG0780037284.01.T05 MTR_2g009560 41.667 72 39 1 114 185 3 71 2.69e-13 63.5
MsG0780037284.01.T01 MTR_1g108765 91.085 258 20 1 1 255 302 559 3.98e-166 472
MsG0780037284.01.T01 MTR_1g108770 91.373 255 19 1 1 252 305 559 1.47e-165 470
MsG0780037284.01.T01 MTR_3g035730 71.084 249 69 1 1 246 242 490 8.96e-124 362
MsG0780037284.01.T01 MTR_4g451275 71.084 249 69 1 1 246 242 490 9.88e-124 361
MsG0780037284.01.T01 MTR_7g021780 71.951 246 66 1 1 243 242 487 6.82e-123 363
MsG0780037284.01.T01 MTR_0002s0650 70.370 243 67 2 1 240 242 482 1.09e-117 349
MsG0780037284.01.T01 MTR_1829s0010 70.742 229 63 2 15 240 1 228 2.76e-114 332
MsG0780037284.01.T01 MTR_7g033765 69.683 221 64 1 1 218 242 462 2.89e-104 315
MsG0780037284.01.T01 MTR_7g033755 63.786 243 62 1 1 243 170 386 4.10e-103 309
MsG0780037284.01.T01 MTR_2g066870 55.061 247 99 4 1 245 175 411 1.30e-82 254
MsG0780037284.01.T01 MTR_1g076100 63.750 80 26 1 72 148 5 84 2.95e-28 103
MsG0780037284.01.T01 MTR_7g117920 76.786 56 13 0 1 56 242 297 1.43e-21 92.4
MsG0780037284.01.T01 MTR_5g090750 71.429 56 16 0 152 207 21 76 5.94e-21 84.7
MsG0780037284.01.T01 MTR_4g005410 29.231 195 121 5 11 189 333 526 5.89e-15 74.7
MsG0780037284.01.T01 MTR_2g009560 41.667 72 39 1 173 244 3 71 2.78e-12 61.6
MsG0780037284.01.T04 MTR_1g108765 89.573 211 19 1 1 208 349 559 1.10e-130 379
MsG0780037284.01.T04 MTR_1g108770 89.904 208 18 1 1 205 352 559 3.22e-130 378
MsG0780037284.01.T04 MTR_4g451275 69.802 202 58 1 1 199 289 490 2.69e-96 289
MsG0780037284.01.T04 MTR_3g035730 69.802 202 58 1 1 199 289 490 2.69e-96 289
MsG0780037284.01.T04 MTR_7g021780 70.854 199 55 1 1 196 289 487 1.44e-95 291
MsG0780037284.01.T04 MTR_1829s0010 69.898 196 55 2 1 193 34 228 5.86e-95 281
MsG0780037284.01.T04 MTR_0002s0650 68.878 196 56 2 1 193 289 482 4.40e-90 276
MsG0780037284.01.T04 MTR_7g033755 61.735 196 49 1 1 196 217 386 2.03e-77 241
MsG0780037284.01.T04 MTR_7g033765 67.816 174 53 1 1 171 289 462 9.71e-77 241
MsG0780037284.01.T04 MTR_2g066870 50.500 200 88 3 1 198 221 411 4.77e-59 191
MsG0780037284.01.T04 MTR_1g076100 63.750 80 26 1 25 101 5 84 1.10e-28 103
MsG0780037284.01.T04 MTR_5g090750 71.429 56 16 0 105 160 21 76 1.73e-21 84.7
MsG0780037284.01.T04 MTR_2g009560 41.667 72 39 1 126 197 3 71 2.84e-13 63.5
MsG0780037284.01.T03 MTR_1g108765 89.908 218 19 1 1 215 342 559 7.22e-136 393
MsG0780037284.01.T03 MTR_1g108770 90.233 215 18 1 1 212 345 559 3.50e-135 391
MsG0780037284.01.T03 MTR_3g035730 70.673 208 58 1 2 206 283 490 2.88e-100 300
MsG0780037284.01.T03 MTR_4g451275 70.673 208 58 1 2 206 283 490 2.91e-100 300
MsG0780037284.01.T03 MTR_7g021780 71.707 205 55 1 2 203 283 487 1.94e-99 301
MsG0780037284.01.T03 MTR_1829s0010 70.792 202 55 2 2 200 28 228 7.24e-99 291
MsG0780037284.01.T03 MTR_0002s0650 69.802 202 56 2 2 200 283 482 6.23e-94 286
MsG0780037284.01.T03 MTR_7g033755 62.871 202 49 1 2 203 211 386 2.90e-81 251
MsG0780037284.01.T03 MTR_7g033765 68.889 180 53 1 2 178 283 462 1.74e-80 251
MsG0780037284.01.T03 MTR_2g066870 50.725 207 91 3 1 205 214 411 6.79e-62 199
MsG0780037284.01.T03 MTR_1g076100 63.750 80 26 1 32 108 5 84 1.06e-28 103
MsG0780037284.01.T03 MTR_5g090750 71.429 56 16 0 112 167 21 76 1.83e-21 85.1
MsG0780037284.01.T03 MTR_2g009560 41.667 72 39 1 133 204 3 71 3.57e-13 63.5
MsG0780037284.01.T06 MTR_1g108770 91.667 60 5 0 1 60 500 559 1.37e-31 114
MsG0780037284.01.T06 MTR_1g108765 88.889 63 7 0 1 63 497 559 8.34e-31 112
MsG0780037284.01.T06 MTR_7g033755 60.714 56 22 0 1 56 336 391 5.19e-17 73.9
MsG0780037284.01.T06 MTR_7g021780 60.714 56 22 0 1 56 437 492 7.06e-17 73.6
MsG0780037284.01.T06 MTR_4g451275 62.963 54 20 0 1 54 437 490 1.20e-16 72.8
MsG0780037284.01.T06 MTR_3g035730 62.963 54 20 0 1 54 437 490 1.25e-16 72.8
MsG0780037284.01.T06 MTR_1829s0010 65.854 41 14 0 1 41 182 222 4.42e-12 59.7
MsG0780037284.01.T06 MTR_0002s0650 58.333 48 18 1 1 48 437 482 1.20e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037284.01.T02 AT5G08680 86.026 229 29 1 1 226 331 559 1.97e-139 402
MsG0780037284.01.T02 AT5G08690 86.026 229 29 1 1 226 328 556 2.31e-139 402
MsG0780037284.01.T02 AT5G08670 86.026 229 29 1 1 226 328 556 3.34e-139 402
MsG0780037284.01.T02 ATCG00480 71.366 227 62 1 1 224 268 494 1.98e-112 332
MsG0780037284.01.T05 AT5G08680 84.184 196 28 1 1 193 364 559 5.70e-114 336
MsG0780037284.01.T05 AT5G08690 84.184 196 28 1 1 193 361 556 6.94e-114 336
MsG0780037284.01.T05 AT5G08670 84.184 196 28 1 1 193 361 556 9.10e-114 335
MsG0780037284.01.T05 ATCG00480 68.557 194 58 1 1 191 301 494 2.23e-89 271
MsG0780037284.01.T01 AT5G08680 86.667 255 31 1 1 252 305 559 8.18e-158 451
MsG0780037284.01.T01 AT5G08690 86.667 255 31 1 1 252 302 556 9.44e-158 450
MsG0780037284.01.T01 AT5G08670 86.667 255 31 1 1 252 302 556 1.38e-157 450
MsG0780037284.01.T01 ATCG00480 71.146 253 70 1 1 250 242 494 4.94e-126 367
MsG0780037284.01.T01 AT1G78900 29.231 195 121 5 11 189 332 525 3.23e-15 75.5
MsG0780037284.01.T01 AT1G78900 29.231 195 121 5 11 189 332 525 3.23e-15 75.5
MsG0780037284.01.T04 AT5G08680 85.096 208 28 1 1 205 352 559 1.57e-123 361
MsG0780037284.01.T04 AT5G08690 85.096 208 28 1 1 205 349 556 1.78e-123 361
MsG0780037284.01.T04 AT5G08670 85.096 208 28 1 1 205 349 556 1.93e-123 361
MsG0780037284.01.T04 ATCG00480 69.903 206 59 1 1 203 289 494 1.55e-98 295
MsG0780037284.01.T03 AT5G08680 85.581 215 28 1 1 212 345 559 1.80e-128 374
MsG0780037284.01.T03 AT5G08690 85.581 215 28 1 1 212 342 556 2.02e-128 374
MsG0780037284.01.T03 AT5G08670 85.581 215 28 1 1 212 342 556 3.44e-128 373
MsG0780037284.01.T03 ATCG00480 70.755 212 59 1 2 210 283 494 2.48e-102 305
MsG0780037284.01.T06 AT5G08680 85.000 60 9 0 1 60 500 559 4.84e-30 110
MsG0780037284.01.T06 AT5G08670 85.000 60 9 0 1 60 497 556 6.02e-30 110
MsG0780037284.01.T06 AT5G08690 85.000 60 9 0 1 60 497 556 2.86e-29 108
MsG0780037284.01.T06 ATCG00480 60.345 58 23 0 1 58 437 494 2.42e-17 74.7

Find 64 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACTCTCTCCACTTATTT+TGG 0.064029 7:-23108856 MsG0780037284.01.T01:CDS
TCAAAATATCGTTGCCATTT+TGG 0.125412 7:-23108772 MsG0780037284.01.T01:CDS
TTTGCCCGTGTCGGTCTTAC+TGG 0.170727 7:-23109230 MsG0780037284.01.T01:CDS
AAGCTCATCCGTTCCCAAAA+TGG 0.327206 7:+23108758 None:intergenic
AGATGTAATTGAACCCTTCT+TGG 0.377378 7:+23109019 None:intergenic
CTATCCTGCTGTTGATCCAT+TGG 0.388341 7:-23108892 MsG0780037284.01.T01:CDS
CCAACATTGTCTACTGATCT+TGG 0.404691 7:-23109068 MsG0780037284.01.T01:CDS
AGAGAATTGTAATGGTTTCA+AGG 0.407895 7:-23108619 MsG0780037284.01.T01:CDS
CCGACACGGGCAAAAGCACC+AGG 0.418505 7:+23109239 None:intergenic
CTTAAGTCAGCCCTTCCATA+TGG 0.442994 7:-23108685 MsG0780037284.01.T01:CDS
GAAGTCTTCACTGGTGCCCC+TGG 0.444882 7:-23108660 MsG0780037284.01.T01:CDS
GTTGTACACCACGAGCAATT+TGG 0.446123 7:+23108820 None:intergenic
TGTTGTTTCAATCACAGATA+AGG 0.454088 7:+23108447 None:intergenic
ACCATATAAAATGCCTGCTC+TGG 0.455216 7:+23108567 None:intergenic
GGTCGTATTCCATCTGCTGT+TGG 0.461688 7:-23109098 MsG0780037284.01.T01:CDS
CAGTGAAGACTTCTGCCATA+TGG 0.466895 7:+23108670 None:intergenic
TGCTCATCACCCAAAATAAG+TGG 0.473721 7:+23108846 None:intergenic
TTCAAGTCGACATATTTGCC+AGG 0.475504 7:+23108642 None:intergenic
AAGTGAGCAAAGGTGGTAGC+AGG 0.486320 7:+23108960 None:intergenic
TGAAGATGCTGCTGATTCCT+TGG 0.486591 7:+23108503 None:intergenic
GCAAAGGTGGTAGCAGGAGC+AGG 0.495043 7:+23108966 None:intergenic
GGGGAGAGATGTCTGTGAAT+AGG 0.497676 7:+23108479 None:intergenic
GACTTGAAAGAGAATTGTAA+TGG 0.505896 7:-23108627 MsG0780037284.01.T01:CDS
GTATGATGACCTTCCAGAGC+AGG 0.508717 7:-23108580 MsG0780037284.01.T01:CDS
GGATCTTTCAAGTCCTCAGC+AGG 0.509614 7:+23108987 None:intergenic
TCTAGACAGATTTCTGAGCT+TGG 0.511126 7:-23108918 MsG0780037284.01.T01:CDS
GAGAATTGTAATGGTTTCAA+GGG 0.513297 7:-23108618 MsG0780037284.01.T01:CDS
TCAGAGGTGTCTGCTCTGCT+TGG 0.529096 7:-23109119 MsG0780037284.01.T01:CDS
TATAAAATGCCTGCTCTGGA+AGG 0.530433 7:+23108571 None:intergenic
TCACAGATAAGGAGATAATG+AGG 0.533999 7:+23108458 None:intergenic
TAATGGTTTCAAGGGTGTGT+TGG 0.539548 7:-23108610 MsG0780037284.01.T01:CDS
CATATGGCAGAAGTCTTCAC+TGG 0.542617 7:-23108669 MsG0780037284.01.T01:CDS
GAATCCAATGGATCAACAGC+AGG 0.543347 7:+23108888 None:intergenic
GCGTATTACAACCACCAAGA+AGG 0.546572 7:-23109033 MsG0780037284.01.T01:CDS
ATACAAGATGTTGAATCCAA+TGG 0.547821 7:+23108876 None:intergenic
GAAGACTTCTGCCATATGGA+AGG 0.549521 7:+23108674 None:intergenic
TGTAATTGAACCCTTCTTGG+TGG 0.565057 7:+23109022 None:intergenic
CGTATTACAACCACCAAGAA+GGG 0.576665 7:-23109032 MsG0780037284.01.T01:CDS
GGTTGGTAACCAACAGCAGA+TGG 0.577576 7:+23109089 None:intergenic
TCAAGTCGACATATTTGCCA+GGG 0.585073 7:+23108643 None:intergenic
CACAGATAAGGAGATAATGA+GGG 0.593533 7:+23108459 None:intergenic
CTGAGTTAGCTTGAGTAAAG+CGG 0.600728 7:+23109138 None:intergenic
GACACGGGCAAAAGCACCAG+GGG 0.602972 7:+23109241 None:intergenic
GGTTTCAAGGGTGTGTTGGA+TGG 0.603206 7:-23108606 MsG0780037284.01.T01:CDS
TTTGGGAACGGATGAGCTTG+GGG 0.605022 7:-23108754 MsG0780037284.01.T01:CDS
GATCAGTAGACAATGTTGGT+TGG 0.607921 7:+23109072 None:intergenic
AAGACTTCTGCCATATGGAA+GGG 0.612740 7:+23108675 None:intergenic
ATCTATCTATCTGCCTGCTG+AGG 0.613246 7:-23109000 MsG0780037284.01.T01:CDS
AGCATCGAAGTGAGCAAAGG+TGG 0.615398 7:+23108953 None:intergenic
AAGTCCAGTAAGACCGACAC+GGG 0.620214 7:+23109226 None:intergenic
CCAAGATCAGTAGACAATGT+TGG 0.620434 7:+23109068 None:intergenic
CATCTTGTCCTTCAGCATCA+CGG 0.623861 7:+23109186 None:intergenic
ACATTGTCTACTGATCTTGG+AGG 0.626628 7:-23109065 MsG0780037284.01.T01:CDS
CAAGTCGACATATTTGCCAG+GGG 0.638676 7:+23108644 None:intergenic
GAGCATTTCCGTGATGCTGA+AGG 0.641193 7:-23109194 MsG0780037284.01.T01:CDS
TATCGATGAAGTCATTGCAA+AGG 0.656711 7:-23108538 MsG0780037284.01.T01:CDS
CGACACGGGCAAAAGCACCA+GGG 0.659506 7:+23109240 None:intergenic
TGTAGCATCGAAGTGAGCAA+AGG 0.665219 7:+23108950 None:intergenic
ACAGATAAGGAGATAATGAG+GGG 0.667604 7:+23108460 None:intergenic
AAAGGCAGAGAAGATTGCCA+AGG 0.685398 7:-23108520 MsG0780037284.01.T01:CDS
TAAGTCCAGTAAGACCGACA+CGG 0.693275 7:+23109225 None:intergenic
GAGCACTACCAAATTGCTCG+TGG 0.732249 7:-23108828 MsG0780037284.01.T01:CDS
CTTTACTCAAGCTAACTCAG+AGG 0.738226 7:-23109135 MsG0780037284.01.T01:CDS
ACACGGGCAAAAGCACCAGG+GGG 0.751957 7:+23109242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAGAATCGTTGAATTTTA+CGG + Chr7:23109000-23109019 None:intergenic 20.0%
!! TAAGAATCGTTGAATTTTAC+GGG + Chr7:23108999-23109018 None:intergenic 25.0%
AGAGAATTGTAATGGTTTCA+AGG - Chr7:23109081-23109100 MsG0780037284.01.T01:CDS 30.0%
ATACAAGATGTTGAATCCAA+TGG + Chr7:23108827-23108846 None:intergenic 30.0%
GACTTGAAAGAGAATTGTAA+TGG - Chr7:23109073-23109092 MsG0780037284.01.T01:CDS 30.0%
GAGAATTGTAATGGTTTCAA+GGG - Chr7:23109082-23109101 MsG0780037284.01.T01:CDS 30.0%
! TATACTCTCTCCACTTATTT+TGG - Chr7:23108844-23108863 MsG0780037284.01.T01:CDS 30.0%
!! ATACTCTCTCCACTTATTTT+GGG - Chr7:23108845-23108864 MsG0780037284.01.T01:CDS 30.0%
!! TCAAAATATCGTTGCCATTT+TGG - Chr7:23108928-23108947 MsG0780037284.01.T01:CDS 30.0%
!!! CAAAATATCGTTGCCATTTT+GGG - Chr7:23108929-23108948 MsG0780037284.01.T01:CDS 30.0%
ACAGATAAGGAGATAATGAG+GGG + Chr7:23109243-23109262 None:intergenic 35.0%
AGATGTAATTGAACCCTTCT+TGG + Chr7:23108684-23108703 None:intergenic 35.0%
CACAGATAAGGAGATAATGA+GGG + Chr7:23109244-23109263 None:intergenic 35.0%
TATCGATGAAGTCATTGCAA+AGG - Chr7:23109162-23109181 MsG0780037284.01.T01:CDS 35.0%
TCACAGATAAGGAGATAATG+AGG + Chr7:23109245-23109264 None:intergenic 35.0%
AAGACTTCTGCCATATGGAA+GGG + Chr7:23109028-23109047 None:intergenic 40.0%
ACATTGTCTACTGATCTTGG+AGG - Chr7:23108635-23108654 MsG0780037284.01.T01:CDS 40.0%
ACCATATAAAATGCCTGCTC+TGG + Chr7:23109136-23109155 None:intergenic 40.0%
CCAACATTGTCTACTGATCT+TGG - Chr7:23108632-23108651 MsG0780037284.01.T01:CDS 40.0%
CCAAGATCAGTAGACAATGT+TGG + Chr7:23108635-23108654 None:intergenic 40.0%
CGTATTACAACCACCAAGAA+GGG - Chr7:23108668-23108687 MsG0780037284.01.T01:CDS 40.0%
CTTTACTCAAGCTAACTCAG+AGG - Chr7:23108565-23108584 MsG0780037284.01.T01:CDS 40.0%
GATCAGTAGACAATGTTGGT+TGG + Chr7:23108631-23108650 None:intergenic 40.0%
TCAAGTCGACATATTTGCCA+GGG + Chr7:23109060-23109079 None:intergenic 40.0%
TCTAGACAGATTTCTGAGCT+TGG - Chr7:23108782-23108801 MsG0780037284.01.T01:CDS 40.0%
TGCTCATCACCCAAAATAAG+TGG + Chr7:23108857-23108876 None:intergenic 40.0%
TGTAATTGAACCCTTCTTGG+TGG + Chr7:23108681-23108700 None:intergenic 40.0%
TTCAAGTCGACATATTTGCC+AGG + Chr7:23109061-23109080 None:intergenic 40.0%
! CAGGCATTTTATATGGTTGG+TGG - Chr7:23109139-23109158 MsG0780037284.01.T01:CDS 40.0%
! CTGAGTTAGCTTGAGTAAAG+CGG + Chr7:23108565-23108584 None:intergenic 40.0%
! GAGCAGGCATTTTATATGGT+TGG - Chr7:23109136-23109155 MsG0780037284.01.T01:CDS 40.0%
! TAATGGTTTCAAGGGTGTGT+TGG - Chr7:23109090-23109109 MsG0780037284.01.T01:CDS 40.0%
! TATAAAATGCCTGCTCTGGA+AGG + Chr7:23109132-23109151 None:intergenic 40.0%
! TCCAGAGCAGGCATTTTATA+TGG - Chr7:23109132-23109151 MsG0780037284.01.T01:CDS 40.0%
!!! TATCGTTGCCATTTTGGGAA+CGG - Chr7:23108934-23108953 MsG0780037284.01.T01:CDS 40.0%
AAAGGCAGAGAAGATTGCCA+AGG - Chr7:23109180-23109199 MsG0780037284.01.T01:CDS 45.0%
AAGCTCATCCGTTCCCAAAA+TGG + Chr7:23108945-23108964 None:intergenic 45.0%
ATCTATCTATCTGCCTGCTG+AGG - Chr7:23108700-23108719 MsG0780037284.01.T01:CDS 45.0%
CAAGTCGACATATTTGCCAG+GGG + Chr7:23109059-23109078 None:intergenic 45.0%
CAGTGAAGACTTCTGCCATA+TGG + Chr7:23109033-23109052 None:intergenic 45.0%
CATATGGCAGAAGTCTTCAC+TGG - Chr7:23109031-23109050 MsG0780037284.01.T01:CDS 45.0%
CATCTTGTCCTTCAGCATCA+CGG + Chr7:23108517-23108536 None:intergenic 45.0%
CTATCCTGCTGTTGATCCAT+TGG - Chr7:23108808-23108827 MsG0780037284.01.T01:CDS 45.0%
CTTAAGTCAGCCCTTCCATA+TGG - Chr7:23109015-23109034 MsG0780037284.01.T01:CDS 45.0%
GAAGACTTCTGCCATATGGA+AGG + Chr7:23109029-23109048 None:intergenic 45.0%
GAATCCAATGGATCAACAGC+AGG + Chr7:23108815-23108834 None:intergenic 45.0%
GCGTATTACAACCACCAAGA+AGG - Chr7:23108667-23108686 MsG0780037284.01.T01:CDS 45.0%
GTTGTACACCACGAGCAATT+TGG + Chr7:23108883-23108902 None:intergenic 45.0%
TAAGTCCAGTAAGACCGACA+CGG + Chr7:23108478-23108497 None:intergenic 45.0%
! TGTAGCATCGAAGTGAGCAA+AGG + Chr7:23108753-23108772 None:intergenic 45.0%
!! ATTTTGGGAACGGATGAGCT+TGG - Chr7:23108944-23108963 MsG0780037284.01.T01:CDS 45.0%
!! TGAAGATGCTGCTGATTCCT+TGG + Chr7:23109200-23109219 None:intergenic 45.0%
!! TTTTGGGAACGGATGAGCTT+GGG - Chr7:23108945-23108964 MsG0780037284.01.T01:CDS 45.0%
AAGTCCAGTAAGACCGACAC+GGG + Chr7:23108477-23108496 None:intergenic 50.0%
AAGTGAGCAAAGGTGGTAGC+AGG + Chr7:23108743-23108762 None:intergenic 50.0%
GAGCACTACCAAATTGCTCG+TGG - Chr7:23108872-23108891 MsG0780037284.01.T01:CDS 50.0%
GAGCATTTCCGTGATGCTGA+AGG - Chr7:23108506-23108525 MsG0780037284.01.T01:CDS 50.0%
GGGGAGAGATGTCTGTGAAT+AGG + Chr7:23109224-23109243 None:intergenic 50.0%
GGTCGTATTCCATCTGCTGT+TGG - Chr7:23108602-23108621 MsG0780037284.01.T01:CDS 50.0%
GTATGATGACCTTCCAGAGC+AGG - Chr7:23109120-23109139 MsG0780037284.01.T01:CDS 50.0%
TTTGGGAACGGATGAGCTTG+GGG - Chr7:23108946-23108965 MsG0780037284.01.T01:CDS 50.0%
! AGCATCGAAGTGAGCAAAGG+TGG + Chr7:23108750-23108769 None:intergenic 50.0%
! GGATCTTTCAAGTCCTCAGC+AGG + Chr7:23108716-23108735 None:intergenic 50.0%
! GGTTTCAAGGGTGTGTTGGA+TGG - Chr7:23109094-23109113 MsG0780037284.01.T01:CDS 50.0%
!! GGTTGGTAACCAACAGCAGA+TGG + Chr7:23108614-23108633 None:intergenic 50.0%
! TTTGCCCGTGTCGGTCTTAC+TGG - Chr7:23108470-23108489 MsG0780037284.01.T01:CDS 55.0%
!! TCAGAGGTGTCTGCTCTGCT+TGG - Chr7:23108581-23108600 MsG0780037284.01.T01:CDS 55.0%
GAAGTCTTCACTGGTGCCCC+TGG - Chr7:23109040-23109059 MsG0780037284.01.T01:CDS 60.0%
GCAAAGGTGGTAGCAGGAGC+AGG + Chr7:23108737-23108756 None:intergenic 60.0%
! CCTGGTGCTTTTGCCCGTGT+CGG - Chr7:23108461-23108480 MsG0780037284.01.T01:CDS 60.0%
!! ACACGGGCAAAAGCACCAGG+GGG + Chr7:23108461-23108480 None:intergenic 60.0%
!! CGACACGGGCAAAAGCACCA+GGG + Chr7:23108463-23108482 None:intergenic 60.0%
!! GACACGGGCAAAAGCACCAG+GGG + Chr7:23108462-23108481 None:intergenic 60.0%
!! CCGACACGGGCAAAAGCACC+AGG + Chr7:23108464-23108483 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 23108458 23109264 23108458 ID=MsG0780037284.01;Name=MsG0780037284.01
Chr7 mRNA 23108458 23109264 23108458 ID=MsG0780037284.01.T01;Parent=MsG0780037284.01;Name=MsG0780037284.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|268
Chr7 exon 23108458 23109264 23108458 ID=MsG0780037284.01.T01:exon:25000;Parent=MsG0780037284.01.T01
Chr7 CDS 23108458 23109264 23108458 ID=MsG0780037284.01.T01:cds;Parent=MsG0780037284.01.T01
Chr7 mRNA 23108458 23109186 23108458 ID=MsG0780037284.01.T02;Parent=MsG0780037284.01;Name=MsG0780037284.01.T02;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|0|1|0|242
Chr7 exon 23108458 23109186 23108458 ID=MsG0780037284.01.T02:exon:25001;Parent=MsG0780037284.01.T02
Chr7 CDS 23108458 23109186 23108458 ID=MsG0780037284.01.T02:cds;Parent=MsG0780037284.01.T02
Chr7 mRNA 23108458 23109144 23108458 ID=MsG0780037284.01.T03;Parent=MsG0780037284.01;Name=MsG0780037284.01.T03;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|0|1|0|228
Chr7 exon 23108458 23109144 23108458 ID=MsG0780037284.01.T03:exon:25002;Parent=MsG0780037284.01.T03
Chr7 CDS 23108458 23109144 23108458 ID=MsG0780037284.01.T03:cds;Parent=MsG0780037284.01.T03
Chr7 mRNA 23108458 23109123 23108458 ID=MsG0780037284.01.T04;Parent=MsG0780037284.01;Name=MsG0780037284.01.T04;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|0|1|0|221
Chr7 exon 23108458 23109123 23108458 ID=MsG0780037284.01.T04:exon:25003;Parent=MsG0780037284.01.T04
Chr7 CDS 23108458 23109123 23108458 ID=MsG0780037284.01.T04:cds;Parent=MsG0780037284.01.T04
Chr7 mRNA 23108458 23109087 23108458 ID=MsG0780037284.01.T05;Parent=MsG0780037284.01;Name=MsG0780037284.01.T05;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|0|1|0|209
Chr7 exon 23108458 23109087 23108458 ID=MsG0780037284.01.T05:exon:25004;Parent=MsG0780037284.01.T05
Chr7 CDS 23108458 23109087 23108458 ID=MsG0780037284.01.T05:cds;Parent=MsG0780037284.01.T05
Chr7 mRNA 23108458 23108688 23108458 ID=MsG0780037284.01.T06;Parent=MsG0780037284.01;Name=MsG0780037284.01.T06;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|0|1|0|76
Chr7 exon 23108458 23108688 23108458 ID=MsG0780037284.01.T06:exon:25005;Parent=MsG0780037284.01.T06
Chr7 CDS 23108458 23108688 23108458 ID=MsG0780037284.01.T06:cds;Parent=MsG0780037284.01.T06
Chr7 mRNA 23108739 23108957 23108739 ID=MsG0780037284.01.T07;Parent=MsG0780037284.01;Name=MsG0780037284.01.T07;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|72
Chr7 exon 23108739 23108957 23108739 ID=MsG0780037284.01.T07:exon:25006;Parent=MsG0780037284.01.T07
Chr7 CDS 23108739 23108957 23108739 ID=MsG0780037284.01.T07:cds;Parent=MsG0780037284.01.T07
Gene Sequence

>MsG0780037284.01.T02

GTGCTTCTTTTCGTTGACAACATTTTCCGCTTTACTCAAGCTAACTCAGAGGTGTCTGCTCTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACATCTATCTATCTGCCTGCTGAGGACTTGAAAGATCCTGCTCCTGCTACCACCTTTGCTCACTTCGATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTTGTATACTCTCTCCACTTATTTTGGGTGATGAGCACTACCAAATTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAAATATCGTTGCCATTTTGGGAACGGATGAGCTTGGGGAAGTTGATAAATTGACTGTCGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCCTTCCATATGGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTCGACTTGAAAGAGAATTGTAATGGTTTCAAGGGTGTGTTGGATGGCAAGTATGATGACCTTCCAGAGCAGGCATTTTATATGGTTGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCCTATTCACAGACATCTCTCCCCTCATTATCTCCTTATCTGTGA

>MsG0780037284.01.T05

ACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACATCTATCTATCTGCCTGCTGAGGACTTGAAAGATCCTGCTCCTGCTACCACCTTTGCTCACTTCGATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTTGTATACTCTCTCCACTTATTTTGGGTGATGAGCACTACCAAATTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAAATATCGTTGCCATTTTGGGAACGGATGAGCTTGGGGAAGTTGATAAATTGACTGTCGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCCTTCCATATGGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTCGACTTGAAAGAGAATTGTAATGGTTTCAAGGGTGTGTTGGATGGCAAGTATGATGACCTTCCAGAGCAGGCATTTTATATGGTTGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCCTATTCACAGACATCTCTCCCCTCATTATCTCCTTATCTGTGA

>MsG0780037284.01.T07

ATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTTGTATACTCTCTCCACTTATTTTGGGTGATGAGCACTACCAAATTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAAATATCGTTGCCATTTTGGGAACGGATGAGCTTGGGGAAGTTGATAAATTGA

>MsG0780037284.01.T01

CCCCCTGGTGCTTTTGCCCGTGTCGGTCTTACTGGACTTACTGTTGCTGAGCATTTCCGTGATGCTGAAGGACAAGATGTGCTTCTTTTCGTTGACAACATTTTCCGCTTTACTCAAGCTAACTCAGAGGTGTCTGCTCTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACATCTATCTATCTGCCTGCTGAGGACTTGAAAGATCCTGCTCCTGCTACCACCTTTGCTCACTTCGATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTTGTATACTCTCTCCACTTATTTTGGGTGATGAGCACTACCAAATTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAAATATCGTTGCCATTTTGGGAACGGATGAGCTTGGGGAAGTTGATAAATTGACTGTCGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCCTTCCATATGGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTCGACTTGAAAGAGAATTGTAATGGTTTCAAGGGTGTGTTGGATGGCAAGTATGATGACCTTCCAGAGCAGGCATTTTATATGGTTGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCCTATTCACAGACATCTCTCCCCTCATTATCTCCTTATCTGTGA

>MsG0780037284.01.T04

CTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACATCTATCTATCTGCCTGCTGAGGACTTGAAAGATCCTGCTCCTGCTACCACCTTTGCTCACTTCGATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTTGTATACTCTCTCCACTTATTTTGGGTGATGAGCACTACCAAATTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAAATATCGTTGCCATTTTGGGAACGGATGAGCTTGGGGAAGTTGATAAATTGACTGTCGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCCTTCCATATGGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTCGACTTGAAAGAGAATTGTAATGGTTTCAAGGGTGTGTTGGATGGCAAGTATGATGACCTTCCAGAGCAGGCATTTTATATGGTTGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCCTATTCACAGACATCTCTCCCCTCATTATCTCCTTATCTGTGA

>MsG0780037284.01.T03

AACTCAGAGGTGTCTGCTCTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACATCTATCTATCTGCCTGCTGAGGACTTGAAAGATCCTGCTCCTGCTACCACCTTTGCTCACTTCGATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTTGTATACTCTCTCCACTTATTTTGGGTGATGAGCACTACCAAATTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAAATATCGTTGCCATTTTGGGAACGGATGAGCTTGGGGAAGTTGATAAATTGACTGTCGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCCTTCCATATGGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTCGACTTGAAAGAGAATTGTAATGGTTTCAAGGGTGTGTTGGATGGCAAGTATGATGACCTTCCAGAGCAGGCATTTTATATGGTTGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCCTATTCACAGACATCTCTCCCCTCATTATCTCCTTATCTGTGA

>MsG0780037284.01.T06

ATGGCAGAAGTCTTCACTGGTGCCCCTGGCAAATATGTCGACTTGAAAGAGAATTGTAATGGTTTCAAGGGTGTGTTGGATGGCAAGTATGATGACCTTCCAGAGCAGGCATTTTATATGGTTGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCCTATTCACAGACATCTCTCCCCTCATTATCTCCTTATCTGTGA

Protein sequence

>MsG0780037284.01.T02

VLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSIYLPAEDLKDPAPATTFAHFDATTVLSRQISELGIYPAVDPLDSTSCILSPLILGDEHYQIARGVQQVLQNYKNLQNIVAILGTDELGEVDKLTVARARKIQRFLSQPFHMAEVFTGAPGKYVDLKENCNGFKGVLDGKYDDLPEQAFYMVGGIDEVIAKAEKIAKESAASSSYSQTSLPSLSPYL*

>MsG0780037284.01.T05

TLSTDLGGLQERITTTKKGSITSIYLPAEDLKDPAPATTFAHFDATTVLSRQISELGIYPAVDPLDSTSCILSPLILGDEHYQIARGVQQVLQNYKNLQNIVAILGTDELGEVDKLTVARARKIQRFLSQPFHMAEVFTGAPGKYVDLKENCNGFKGVLDGKYDDLPEQAFYMVGGIDEVIAKAEKIAKESAASSSYSQTSLPSLSPYL*

>MsG0780037284.01.T07

MLQQCCLDRFLSLVSILLLIHWIQHLVYSLHLFWVMSTTKLLVVYNKFFKTTRIFKISLPFWERMSLGKLIN*

>MsG0780037284.01.T01

PPGAFARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSIYLPAEDLKDPAPATTFAHFDATTVLSRQISELGIYPAVDPLDSTSCILSPLILGDEHYQIARGVQQVLQNYKNLQNIVAILGTDELGEVDKLTVARARKIQRFLSQPFHMAEVFTGAPGKYVDLKENCNGFKGVLDGKYDDLPEQAFYMVGGIDEVIAKAEKIAKESAASSSYSQTSLPSLSPYL*

>MsG0780037284.01.T04

LGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSIYLPAEDLKDPAPATTFAHFDATTVLSRQISELGIYPAVDPLDSTSCILSPLILGDEHYQIARGVQQVLQNYKNLQNIVAILGTDELGEVDKLTVARARKIQRFLSQPFHMAEVFTGAPGKYVDLKENCNGFKGVLDGKYDDLPEQAFYMVGGIDEVIAKAEKIAKESAASSSYSQTSLPSLSPYL*

>MsG0780037284.01.T03

NSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSIYLPAEDLKDPAPATTFAHFDATTVLSRQISELGIYPAVDPLDSTSCILSPLILGDEHYQIARGVQQVLQNYKNLQNIVAILGTDELGEVDKLTVARARKIQRFLSQPFHMAEVFTGAPGKYVDLKENCNGFKGVLDGKYDDLPEQAFYMVGGIDEVIAKAEKIAKESAASSSYSQTSLPSLSPYL*

>MsG0780037284.01.T06

MAEVFTGAPGKYVDLKENCNGFKGVLDGKYDDLPEQAFYMVGGIDEVIAKAEKIAKESAASSSYSQTSLPSLSPYL*