AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018883.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018883.01.T01 MTR_4g019450 95.146 618 10 8 1 615 1 601 0.0 1181
MsG0480018883.01.T01 MTR_7g065050 57.534 511 152 17 115 615 61 516 1.85e-169 493
MsG0480018883.01.T01 MTR_2g095050 47.482 278 119 2 195 445 234 511 9.56e-76 253
MsG0480018883.01.T01 MTR_5g018860 44.681 329 148 8 166 467 297 618 3.58e-72 247
MsG0480018883.01.T01 MTR_8g078480 47.078 308 135 5 180 461 359 664 5.14e-71 245
MsG0480018883.01.T01 MTR_1g057790 47.451 255 99 4 208 434 160 407 1.72e-62 218
MsG0480018883.01.T01 MTR_7g106320 42.088 297 121 5 213 472 175 457 2.24e-62 218
MsG0480018883.01.T01 MTR_8g098815 34.641 459 224 11 209 614 185 620 1.74e-61 215
MsG0480018883.01.T01 MTR_4g051532 44.928 276 127 5 209 461 217 490 3.15e-61 216
MsG0480018883.01.T01 MTR_3g112290 41.328 271 128 5 206 451 162 426 3.23e-60 207
MsG0480018883.01.T01 MTR_1g023050 54.545 176 76 1 268 443 255 426 7.93e-60 211
MsG0480018883.01.T01 MTR_3g112300 41.985 262 125 3 205 443 158 415 3.57e-58 204
MsG0480018883.01.T01 MTR_3g112300 41.985 262 125 3 205 443 158 415 6.57e-58 204
MsG0480018883.01.T01 MTR_3g112300 38.075 239 121 3 205 420 158 392 7.41e-43 159
MsG0480018883.01.T01 MTR_1g016490 37.563 197 119 4 268 463 322 515 8.48e-36 141
MsG0480018883.01.T01 MTR_3g112300 34.862 218 115 3 205 399 158 371 3.24e-31 125
MsG0480018883.01.T01 MTR_5g033720 54.902 51 23 0 384 434 246 296 7.37e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018883.01.T01 AT5G02030 45.665 519 194 14 139 615 103 575 2.45e-111 345
MsG0480018883.01.T01 AT2G27990 45.455 308 142 5 147 445 206 496 5.35e-73 245
MsG0480018883.01.T01 AT4G36870 50.000 256 102 5 209 440 312 565 9.62e-66 229
MsG0480018883.01.T01 AT4G36870 50.000 256 102 5 209 440 312 565 9.62e-66 229
MsG0480018883.01.T01 AT1G75410 44.828 261 117 5 204 443 162 416 1.47e-63 218
MsG0480018883.01.T01 AT1G75410 44.828 261 117 5 204 443 162 416 1.47e-63 218
MsG0480018883.01.T01 AT1G19700 45.956 272 103 7 205 443 161 421 1.63e-63 219
MsG0480018883.01.T01 AT1G19700 45.956 272 103 7 205 443 161 421 1.63e-63 219
MsG0480018883.01.T01 AT1G19700 45.956 272 103 7 205 443 161 421 1.63e-63 219
MsG0480018883.01.T01 AT1G19700 45.956 272 103 7 205 443 161 421 1.63e-63 219
MsG0480018883.01.T01 AT1G19700 45.956 272 103 7 205 443 161 421 1.63e-63 219
MsG0480018883.01.T01 AT2G23760 48.649 259 102 6 209 440 237 491 3.10e-63 220
MsG0480018883.01.T01 AT2G23760 48.649 259 102 6 209 440 237 491 3.10e-63 220
MsG0480018883.01.T01 AT2G23760 48.649 259 102 6 209 440 237 491 3.10e-63 220
MsG0480018883.01.T01 AT2G16400 35.529 425 212 13 203 615 108 482 4.79e-63 216
MsG0480018883.01.T01 AT4G34610 37.674 430 208 16 209 615 140 532 5.88e-62 214
MsG0480018883.01.T01 AT4G34610 37.674 430 208 16 209 615 140 532 5.88e-62 214
MsG0480018883.01.T01 AT4G34610 37.674 430 208 16 209 615 140 532 5.88e-62 214
MsG0480018883.01.T01 AT4G34610 37.674 430 208 16 209 615 140 532 5.88e-62 214
MsG0480018883.01.T01 AT2G35940 44.444 279 110 6 194 434 175 446 2.50e-57 205
MsG0480018883.01.T01 AT2G35940 44.444 279 110 6 194 434 175 446 2.50e-57 205
MsG0480018883.01.T01 AT2G35940 44.444 279 110 6 194 434 175 446 2.50e-57 205
MsG0480018883.01.T01 AT2G27220 37.222 360 163 12 215 556 82 396 5.02e-57 198
MsG0480018883.01.T01 AT2G27220 37.222 360 163 12 215 556 82 396 5.02e-57 198
MsG0480018883.01.T01 AT5G41410 35.841 452 203 19 213 614 197 611 9.77e-55 196
MsG0480018883.01.T01 AT2G23760 40.193 311 103 7 209 440 237 543 1.32e-53 194
MsG0480018883.01.T01 AT2G27220 35.450 378 163 13 215 556 82 414 2.85e-53 189
MsG0480018883.01.T01 AT4G36870 46.835 237 100 5 209 421 312 546 1.14e-51 187
MsG0480018883.01.T01 AT4G36870 46.383 235 100 5 209 419 312 544 2.75e-50 183
MsG0480018883.01.T01 AT1G75410 42.017 238 111 5 204 420 162 393 2.79e-49 177
MsG0480018883.01.T01 AT1G75430 37.184 277 138 9 210 457 17 286 2.11e-48 171
MsG0480018883.01.T01 AT2G27990 37.891 256 145 4 147 399 206 450 2.82e-42 159
MsG0480018883.01.T01 AT4G32980 37.853 177 95 3 268 440 274 439 9.54e-34 135
MsG0480018883.01.T01 AT4G32980 37.853 177 95 3 268 440 274 439 9.54e-34 135
MsG0480018883.01.T01 AT1G75430 31.507 219 114 9 210 399 17 228 4.26e-22 97.4
MsG0480018883.01.T01 AT1G23380 52.727 55 26 0 380 434 255 309 2.49e-11 65.9
MsG0480018883.01.T01 AT1G23380 52.727 55 26 0 380 434 253 307 2.69e-11 65.9
MsG0480018883.01.T01 AT1G70510 52.727 55 26 0 380 434 237 291 9.31e-11 63.9
MsG0480018883.01.T01 AT1G70510 52.727 55 26 0 380 434 241 295 9.88e-11 63.9

Find 123 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAATTACCTTCATTAT+TGG 0.154139 4:+11056762 None:intergenic
CAAGAGAAGATCAAGGAAAA+AGG 0.221518 4:-11061830 MsG0480018883.01.T01:CDS
AATCGTTGAGCTGCACTTAA+AGG 0.224777 4:+11056802 None:intergenic
GAATCACAAAATAGGCATTT+TGG 0.235036 4:-11056727 MsG0480018883.01.T01:CDS
ACATCATTTGAGTATGTTTC+CGG 0.258945 4:-11058317 MsG0480018883.01.T01:CDS
GGTGGTTCAGTTCCATTTAC+TGG 0.260918 4:-11061468 MsG0480018883.01.T01:CDS
AGTTCAGATTGTTGTTTCTT+TGG 0.287420 4:+11062364 None:intergenic
ACAGAAGCATATCCAGTAAA+TGG 0.287637 4:+11061456 None:intergenic
AGATATGGATCTATGATTTA+TGG 0.297472 4:-11061543 MsG0480018883.01.T01:CDS
AAAGAAGGTATAATAATTAA+TGG 0.298565 4:+11062226 None:intergenic
TTGGTTGAAGGAGGAGGAGG+AGG 0.308929 4:-11061498 MsG0480018883.01.T01:CDS
AGAACACTCTAAATCTTTCA+TGG 0.310197 4:+11061872 None:intergenic
CTTCAAGCATCTAAAATGTT+TGG 0.311343 4:+11058247 None:intergenic
TTTGATGATGGAATCTCCTT+TGG 0.312465 4:-11061322 MsG0480018883.01.T01:CDS
TGACTCCTAATTGGTATGTT+AGG 0.316989 4:+11057012 None:intergenic
TTATTCAAAGTCTCAAAATA+AGG 0.323114 4:+11061753 None:intergenic
CTTTCACTATTGCCAAATCT+TGG 0.325024 4:+11058152 None:intergenic
TGCAGCTCCTTATGCAAGTT+TGG 0.333083 4:-11058285 MsG0480018883.01.T01:CDS
TGTTGTCCTTGACTCCTAAT+TGG 0.334463 4:+11057003 None:intergenic
CCAACTACAGTTCAATAATA+AGG 0.350401 4:-11058210 MsG0480018883.01.T01:CDS
TTAAGTGCAGCTCAACGATT+TGG 0.354571 4:-11056799 MsG0480018883.01.T01:CDS
TTGTGTATCAGGTGTCAAAT+TGG 0.359128 4:-11057260 MsG0480018883.01.T01:intron
TACCTTCATTATTGGTTTCA+AGG 0.361603 4:+11056770 None:intergenic
TGCTGATTCTTCTTTGATGA+TGG 0.364670 4:-11061334 MsG0480018883.01.T01:CDS
ATCTTGGAGATTCTTCCTTC+CGG 0.371264 4:+11058168 None:intergenic
GGTGGTGGAGGTGTGATTCA+AGG 0.382359 4:-11061522 MsG0480018883.01.T01:CDS
GTTGGTAGTGGAAGCAATAA+TGG 0.383790 4:-11056919 MsG0480018883.01.T01:CDS
AATTATGCTTCAAACCTTGT+TGG 0.386490 4:+11061910 None:intergenic
GAGTTGAATCTACAAAGATA+TGG 0.392860 4:-11061558 MsG0480018883.01.T01:CDS
AAGGAAGAATCTCCAAGATT+TGG 0.395392 4:-11058164 MsG0480018883.01.T01:CDS
TAAATGCAAGAGTAAGGCTT+TGG 0.402125 4:-11057233 MsG0480018883.01.T01:CDS
GTTGGAAATCTTGGTGTTTG+TGG 0.405935 4:-11061375 MsG0480018883.01.T01:CDS
AAATTCCTAACATACCAATT+AGG 0.407283 4:-11057017 MsG0480018883.01.T01:CDS
TCCAAAAGATTCACAACAAA+AGG 0.413681 4:-11057166 MsG0480018883.01.T01:CDS
TATGTTAGGAATTTCATTTA+CGG 0.414873 4:+11057026 None:intergenic
TATCTCTTCTACTTTGTTGT+GGG 0.415721 4:+11062024 None:intergenic
TTCTACTTTGTTGTGGGACA+TGG 0.419439 4:+11062030 None:intergenic
CAAGGGTTGGTTGAAGGAGG+AGG 0.420449 4:-11061504 MsG0480018883.01.T01:CDS
TGAGCTGCACTTAAAGGAAA+TGG 0.423599 4:+11056808 None:intergenic
ATTGTTGTTTCTTTGGAAGA+AGG 0.425215 4:+11062371 None:intergenic
TGGAGGTGTGATTCAAGGGT+TGG 0.429011 4:-11061517 MsG0480018883.01.T01:CDS
CCTTATTATTGAACTGTAGT+TGG 0.430289 4:+11058210 None:intergenic
GGTTCATAAATGCAAGAGTA+AGG 0.433955 4:-11057239 MsG0480018883.01.T01:CDS
TGTTAGTAGTAATTTACCTT+TGG 0.434906 4:-11061580 MsG0480018883.01.T01:CDS
GGGTTGGTTGAAGGAGGAGG+AGG 0.435240 4:-11061501 MsG0480018883.01.T01:CDS
TTTGTGCTTGATAAAGAAAA+GGG 0.439408 4:+11061709 None:intergenic
CTTTATCAAAATCATGGGAT+TGG 0.443197 4:-11056841 MsG0480018883.01.T01:CDS
TTTATCGCCAAACTTGCATA+AGG 0.446881 4:+11058278 None:intergenic
TCTTCCAACAATTCTTGAGC+TGG 0.447343 4:+11061408 None:intergenic
CTACAAAGTCATGAAACATT+TGG 0.448894 4:+11056686 None:intergenic
GCAGCTCAACGATTTGGTCT+TGG 0.449764 4:-11056793 MsG0480018883.01.T01:CDS
GTGGTGGAGGTGTGATTCAA+GGG 0.451179 4:-11061521 MsG0480018883.01.T01:CDS
TTATCTCTTCTACTTTGTTG+TGG 0.452626 4:+11062023 None:intergenic
GAAACCAGCTCAAGAATTGT+TGG 0.460161 4:-11061412 MsG0480018883.01.T01:CDS
CCTCTTTGAGGTCGCCATAC+AGG 0.463860 4:+11058083 None:intergenic
AACCGGTCTATCGCGTAGCC+AGG 0.468227 4:-11057383 MsG0480018883.01.T01:intron
GAGACTTTGAATAACAATCA+AGG 0.468564 4:-11061744 MsG0480018883.01.T01:CDS
CGCTCGGGGAGTCCTCTTTG+AGG 0.471673 4:+11058071 None:intergenic
ATGTGTGATGTTGGAAATCT+TGG 0.472538 4:-11061384 MsG0480018883.01.T01:CDS
GTGATTCAAGGGTTGGTTGA+AGG 0.473616 4:-11061510 MsG0480018883.01.T01:CDS
TTGAGTGAAGAAGATCCATT+TGG 0.474029 4:-11061294 MsG0480018883.01.T01:CDS
CTAGGACTTTATCAAAATCA+TGG 0.477214 4:-11056847 MsG0480018883.01.T01:CDS
TAACCTGACCTATGGCTGTA+AGG 0.479106 4:+11058122 None:intergenic
CCAACACCTACATGTTGAAA+AGG 0.482247 4:+11056952 None:intergenic
CAAATGTTTCATGACTTTGT+AGG 0.488512 4:-11056685 MsG0480018883.01.T01:CDS
TCTTGGTGTTTGTGGTGAAA+AGG 0.489743 4:-11061367 MsG0480018883.01.T01:CDS
TGTCGATGTAGACGGATTCT+CGG 0.491856 4:+11057080 None:intergenic
AAAGAAGAAGAATCATAGAA+AGG 0.493187 4:+11061951 None:intergenic
ATGTGAATTTCTTCCACCAT+TGG 0.498530 4:+11057207 None:intergenic
TTGAGCAGCAACAACCTGTA+TGG 0.499228 4:-11058097 MsG0480018883.01.T01:CDS
AGAACAGTCACAGCACGCTC+GGG 0.499463 4:+11058056 None:intergenic
TTGGAAGAGATGTGTGATGT+TGG 0.509914 4:-11061393 MsG0480018883.01.T01:CDS
AACAAAAGGAAGAAAATTGT+AGG 0.510651 4:-11057152 MsG0480018883.01.T01:CDS
ATTCAAGGGTTGGTTGAAGG+AGG 0.514542 4:-11061507 MsG0480018883.01.T01:CDS
GAATCATAGAAAGGAAGTAA+AGG 0.518144 4:+11061960 None:intergenic
GGCCTTGAAACCAATAATGA+AGG 0.519264 4:-11056772 MsG0480018883.01.T01:CDS
AACAGGTTTATAAGCGGTAC+AGG 0.526188 4:-11058370 MsG0480018883.01.T01:intron
ATTTACGGCCCGCTTGTAAG+TGG 0.527527 4:+11057041 None:intergenic
ATAAAAGCACAAGAGAAACT+TGG 0.528456 4:+11056588 None:intergenic
ATAATGTTGGCTAAACAAAC+CGG 0.528557 4:-11057400 MsG0480018883.01.T01:CDS
AGATTTGGCAATAGTGAAAG+AGG 0.531484 4:-11058149 MsG0480018883.01.T01:CDS
TTATTGCGACCATCACCAAA+TGG 0.532053 4:+11061279 None:intergenic
GGAATGAACATTGTTGGTAG+TGG 0.533845 4:-11056931 MsG0480018883.01.T01:CDS
GGTGTTGGAATGAACATTGT+TGG 0.538133 4:-11056937 MsG0480018883.01.T01:CDS
TGATACAGATAAAATAATGT+TGG 0.538302 4:-11057413 MsG0480018883.01.T01:CDS
ATGAAGCTGGATTGAAGTGA+TGG 0.541704 4:+11062184 None:intergenic
TCTTCACTCAATCTTTCCAA+AGG 0.544697 4:+11061306 None:intergenic
GGACCTTACAGCCATAGGTC+AGG 0.547661 4:-11058125 MsG0480018883.01.T01:CDS
AGATAAGCTTAGAGTTGTTG+TGG 0.547689 4:-11062006 MsG0480018883.01.T01:CDS
TTTGGAAGAGATGTAATTGG+TGG 0.549107 4:-11056709 MsG0480018883.01.T01:CDS
TAGGACTTTATCAAAATCAT+GGG 0.549166 4:-11056846 MsG0480018883.01.T01:CDS
AAGAACAGTCACAGCACGCT+CGG 0.552428 4:+11058055 None:intergenic
CTGTGACTGTTCTTAGAGCA+TGG 0.561711 4:-11058046 MsG0480018883.01.T01:CDS
GAAGGTAATTATGTTATGAG+TGG 0.565516 4:-11056754 MsG0480018883.01.T01:CDS
AACATACCAATTAGGAGTCA+AGG 0.566002 4:-11057009 MsG0480018883.01.T01:CDS
CTTTGTAGATTCAACTCCAA+AGG 0.568174 4:+11061564 None:intergenic
AGGAGCTGCATTGTTGAGGC+CGG 0.568570 4:+11058298 None:intergenic
TCATGATGCCACTTACAAGC+GGG 0.571787 4:-11057049 MsG0480018883.01.T01:CDS
TCTATGATTTATGGTGGTGG+AGG 0.573959 4:-11061534 MsG0480018883.01.T01:CDS
ATACTACCAACAGATGCAAT+CGG 0.575247 4:-11058345 MsG0480018883.01.T01:CDS
CATAAGGAGCTGCATTGTTG+AGG 0.575307 4:+11058294 None:intergenic
GATTTGGCAATAGTGAAAGA+GGG 0.577653 4:-11058148 MsG0480018883.01.T01:CDS
GCTCAAGATAACCTGACCTA+TGG 0.580908 4:+11058114 None:intergenic
GGATCTATGATTTATGGTGG+TGG 0.583114 4:-11061537 MsG0480018883.01.T01:CDS
TACCTGGCTACGCGATAGAC+CGG 0.588694 4:+11057381 None:intergenic
GATGAAAGTGACAAAGACAA+AGG 0.589112 4:+11061612 None:intergenic
GAAACTAGAGAAGTATCTGA+AGG 0.590625 4:+11057102 None:intergenic
AACTTATCTGTCGATGTAGA+CGG 0.592212 4:+11057072 None:intergenic
GAAGAAGATCCATTTGGTGA+TGG 0.601601 4:-11061288 MsG0480018883.01.T01:CDS
TTCATGATGCCACTTACAAG+CGG 0.616315 4:-11057050 MsG0480018883.01.T01:CDS
AGTAAGGCTTTGGAAACCAA+TGG 0.617622 4:-11057223 MsG0480018883.01.T01:CDS
TTACGACCGATTGCATCTGT+TGG 0.619652 4:+11058339 None:intergenic
AAAGGTAGACTCATTTGTTG+TGG 0.632009 4:+11056970 None:intergenic
AGTAATGTGTCATTGACACT+AGG 0.633869 4:-11056865 MsG0480018883.01.T01:CDS
GAACAGTCACAGCACGCTCG+GGG 0.634057 4:+11058057 None:intergenic
CCTGTATGGCGACCTCAAAG+AGG 0.642112 4:-11058083 MsG0480018883.01.T01:CDS
ATTGTTGACTATGCTTGATG+AGG 0.645801 4:-11061250 MsG0480018883.01.T01:intron
TATGGATCTATGATTTATGG+TGG 0.657447 4:-11061540 MsG0480018883.01.T01:CDS
ATTTGGCAATAGTGAAAGAG+GGG 0.658417 4:-11058147 MsG0480018883.01.T01:CDS
TTACTCAACAGGTTTATAAG+CGG 0.661325 4:-11058376 MsG0480018883.01.T01:intron
AAATTCACATGCTAGAAACA+AGG 0.670651 4:-11057194 MsG0480018883.01.T01:CDS
AAGGCTTTGGAAACCAATGG+TGG 0.671971 4:-11057220 MsG0480018883.01.T01:CDS
TTTGGCAATAGTGAAAGAGG+GGG 0.716637 4:-11058146 MsG0480018883.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAAAAATCTATTTTTT+AGG - Chr4:11059127-11059146 MsG0480018883.01.T01:intron 10.0%
!!! GTTTTAATATATTTTTTCTA+TGG - Chr4:11056901-11056920 MsG0480018883.01.T01:CDS 10.0%
!!! TTTAGTATTTTTTTTCATTT+GGG - Chr4:11056836-11056855 MsG0480018883.01.T01:CDS 10.0%
!!! TTTCCATTTTTAATTTTTTT+TGG - Chr4:11057984-11058003 MsG0480018883.01.T01:intron 10.0%
!!! TTTTAGTATTTTTTTTCATT+TGG - Chr4:11056835-11056854 MsG0480018883.01.T01:CDS 10.0%
!! AAAAACAAACACTTTAAATT+AGG + Chr4:11058829-11058848 None:intergenic 15.0%
!! AAAACAAACACTTTAAATTA+GGG + Chr4:11058828-11058847 None:intergenic 15.0%
!! ACAAAATTTCACTTATAATT+AGG + Chr4:11058736-11058755 None:intergenic 15.0%
!! ACTAACAAAAAATATAATTC+AGG + Chr4:11061192-11061211 None:intergenic 15.0%
!! AGAAAAATAAATAACTTCAT+TGG - Chr4:11058903-11058922 MsG0480018883.01.T01:intron 15.0%
!! ATAGATTTATAGATTTATGT+TGG + Chr4:11060324-11060343 None:intergenic 15.0%
!! CAAAATTTCACTTATAATTA+GGG + Chr4:11058735-11058754 None:intergenic 15.0%
!! CTAACAAAAAATATAATTCA+GGG + Chr4:11061191-11061210 None:intergenic 15.0%
!! TCTCCAAAAAAAATTAAAAA+TGG + Chr4:11057990-11058009 None:intergenic 15.0%
!! TGTCTTAATTTCTAATTAAT+AGG - Chr4:11058251-11058270 MsG0480018883.01.T01:CDS 15.0%
!! TTAAAGTTATACTATATTGA+AGG - Chr4:11058486-11058505 MsG0480018883.01.T01:intron 15.0%
!! TTTCTAATTAATAGGTTAAT+AGG - Chr4:11058259-11058278 MsG0480018883.01.T01:CDS 15.0%
!!! AAAGAAGGTATAATAATTAA+TGG + Chr4:11056756-11056775 None:intergenic 15.0%
!!! AAGAAACTTATATTTTTAGA+TGG - Chr4:11058578-11058597 MsG0480018883.01.T01:intron 15.0%
!!! AATAATTAGATTCTGAAATA+TGG + Chr4:11059781-11059800 None:intergenic 15.0%
!!! ATAATTAGATTCTGAAATAT+GGG + Chr4:11059780-11059799 None:intergenic 15.0%
!!! ATTATAAGTGAAATTTTGTT+TGG - Chr4:11058737-11058756 MsG0480018883.01.T01:intron 15.0%
!!! GAAATTAATGATTTAGAATA+TGG + Chr4:11061648-11061667 None:intergenic 15.0%
!!! TAATATTTCACAATTTTCTA+TGG - Chr4:11058850-11058869 MsG0480018883.01.T01:intron 15.0%
!!! TATATTTTTAGATGGTAATA+AGG - Chr4:11058586-11058605 MsG0480018883.01.T01:intron 15.0%
!!! TTAAGTATTCTTTTAAAAAG+TGG - Chr4:11058120-11058139 MsG0480018883.01.T01:CDS 15.0%
!!! TTATAAGTGAAATTTTGTTT+GGG - Chr4:11058738-11058757 MsG0480018883.01.T01:intron 15.0%
!!! TTGTAATTTTAATACATTCA+GGG + Chr4:11061162-11061181 None:intergenic 15.0%
!!! TTTGTAATTTTAATACATTC+AGG + Chr4:11061163-11061182 None:intergenic 15.0%
!!! TTTTATCTATTGATCTTAAT+GGG - Chr4:11059547-11059566 MsG0480018883.01.T01:intron 15.0%
!! AACATAATTACCTTCATTAT+TGG + Chr4:11062220-11062239 None:intergenic 20.0%
!! AATAAACTATCAAAATGCTT+AGG - Chr4:11059588-11059607 MsG0480018883.01.T01:intron 20.0%
!! AGTTTATCTAGAAAAAGAAA+TGG - Chr4:11059505-11059524 MsG0480018883.01.T01:intron 20.0%
!! ATAAACTATCAAAATGCTTA+GGG - Chr4:11059589-11059608 MsG0480018883.01.T01:intron 20.0%
!! ATAAGTAAGTTTGCATAAAA+AGG - Chr4:11060079-11060098 MsG0480018883.01.T01:intron 20.0%
!! ATAGATATTGTTATATTGGT+AGG + Chr4:11061698-11061717 None:intergenic 20.0%
!! ATCTTAATTTATGTGCATTA+AGG - Chr4:11058225-11058244 MsG0480018883.01.T01:CDS 20.0%
!! ATTCTAAATACTCTCAATTT+GGG - Chr4:11058038-11058057 MsG0480018883.01.T01:CDS 20.0%
!! CAAATTTGATATACCAATAA+AGG - Chr4:11061028-11061047 MsG0480018883.01.T01:intron 20.0%
!! CAAGATAGATATTGTTATAT+TGG + Chr4:11061702-11061721 None:intergenic 20.0%
!! CAATACTCTTTCTTATATTT+GGG - Chr4:11059264-11059283 MsG0480018883.01.T01:intron 20.0%
!! GTTTATCTAGAAAAAGAAAT+GGG - Chr4:11059506-11059525 MsG0480018883.01.T01:intron 20.0%
!! TAGAATCATAAATAATCTTG+TGG - Chr4:11059352-11059371 MsG0480018883.01.T01:intron 20.0%
!! TATGTTAGGAATTTCATTTA+CGG + Chr4:11061956-11061975 None:intergenic 20.0%
!! TATTCTAAATACTCTCAATT+TGG - Chr4:11058037-11058056 MsG0480018883.01.T01:CDS 20.0%
!! TATTTAGACCATTAACAAAT+TGG + Chr4:11058957-11058976 None:intergenic 20.0%
!! TCACTTAAAAAAGAAATCTA+TGG + Chr4:11058435-11058454 None:intergenic 20.0%
!! TGATACAGATAAAATAATGT+TGG - Chr4:11061566-11061585 MsG0480018883.01.T01:CDS 20.0%
!! TTAAAAAAGAAATCTATGGT+TGG + Chr4:11058431-11058450 None:intergenic 20.0%
!! TTATTCAAAGTCTCAAAATA+AGG + Chr4:11057229-11057248 None:intergenic 20.0%
!! TTCTTATAATTATGACTAGA+GGG + Chr4:11059112-11059131 None:intergenic 20.0%
!! TTGAAGTGGTTATATAATTA+GGG + Chr4:11060196-11060215 None:intergenic 20.0%
!! TTTCTTATAATTATGACTAG+AGG + Chr4:11059113-11059132 None:intergenic 20.0%
!!! AATTTTCTATGGAAGTATAT+TGG - Chr4:11058861-11058880 MsG0480018883.01.T01:intron 20.0%
!!! ACCATTTTAATTCTTAAACA+AGG + Chr4:11060287-11060306 None:intergenic 20.0%
!!! ATTATTTTATCTGTATCAGT+AGG + Chr4:11061564-11061583 None:intergenic 20.0%
!!! ATTATTTTTGTCATTTTGTG+TGG - Chr4:11057906-11057925 MsG0480018883.01.T01:intron 20.0%
!!! CTTTTATCTATTGATCTTAA+TGG - Chr4:11059546-11059565 MsG0480018883.01.T01:intron 20.0%
!!! GCTTTTTAAGAAAAGTTAAT+GGG - Chr4:11058365-11058384 MsG0480018883.01.T01:CDS 20.0%
!!! GGTCATTAAAAAAATTTGTT+GGG - Chr4:11056857-11056876 MsG0480018883.01.T01:CDS 20.0%
!!! TAAAATGGAATTTCTGATTT+TGG + Chr4:11059897-11059916 None:intergenic 20.0%
!!! TCCTTGTTTAAGAATTAAAA+TGG - Chr4:11060283-11060302 MsG0480018883.01.T01:intron 20.0%
!!! TTTATAGACCAATTTGTTAA+TGG - Chr4:11058946-11058965 MsG0480018883.01.T01:intron 20.0%
! AAAGAAGAAGAATCATAGAA+AGG + Chr4:11057031-11057050 None:intergenic 25.0%
! AAATATGGGTTTGAAAAGAT+AGG + Chr4:11059766-11059785 None:intergenic 25.0%
! AAATTCCTAACATACCAATT+AGG - Chr4:11061962-11061981 MsG0480018883.01.T01:CDS 25.0%
! AACAAAAGGAAGAAAATTGT+AGG - Chr4:11061827-11061846 MsG0480018883.01.T01:CDS 25.0%
! AGATATGGATCTATGATTTA+TGG - Chr4:11057436-11057455 MsG0480018883.01.T01:intron 25.0%
! AGGTGTATACCAATAATTTA+TGG + Chr4:11058708-11058727 None:intergenic 25.0%
! ATAAACGAAATACACATTCT+CGG - Chr4:11061295-11061314 MsG0480018883.01.T01:CDS 25.0%
! ATTCTTGCATTATATTGTGA+TGG - Chr4:11058320-11058339 MsG0480018883.01.T01:CDS 25.0%
! CACTAAATTGACTAACAAAA+TGG - Chr4:11061221-11061240 MsG0480018883.01.T01:intron 25.0%
! CTAATTATATAACCACTTCA+AGG - Chr4:11060195-11060214 MsG0480018883.01.T01:intron 25.0%
! CTTGAAGTGGTTATATAATT+AGG + Chr4:11060197-11060216 None:intergenic 25.0%
! GAAATAAACGAAACATAGAA+TGG + Chr4:11060989-11061008 None:intergenic 25.0%
! GACAAAAAAAGAAAGAAAGA+AGG + Chr4:11056771-11056790 None:intergenic 25.0%
! GCAATACTCTTTCTTATATT+TGG - Chr4:11059263-11059282 MsG0480018883.01.T01:intron 25.0%
! GGGTCATTAAAAAAATTTGT+TGG - Chr4:11056856-11056875 MsG0480018883.01.T01:CDS 25.0%
! GGTGTATACCAATAATTTAT+GGG + Chr4:11058707-11058726 None:intergenic 25.0%
! GTGTATGTGATTCATAATTT+AGG + Chr4:11060244-11060263 None:intergenic 25.0%
! TAGGACTTTATCAAAATCAT+GGG - Chr4:11062133-11062152 MsG0480018883.01.T01:five_prime_UTR 25.0%
! TATCACGATTATTGTCATAT+TGG + Chr4:11059442-11059461 None:intergenic 25.0%
! TCTTGTGGTACATATTTAAT+TGG - Chr4:11059367-11059386 MsG0480018883.01.T01:intron 25.0%
! TGGTAGGATTATAAATTCAT+TGG + Chr4:11061682-11061701 None:intergenic 25.0%
! TGTTAGTAGTAATTTACCTT+TGG - Chr4:11057399-11057418 MsG0480018883.01.T01:CDS 25.0%
! TTTAAGAAAAGTTAATGGGA+AGG - Chr4:11058369-11058388 MsG0480018883.01.T01:intron 25.0%
! TTTGTGCTTGATAAAGAAAA+GGG + Chr4:11057273-11057292 None:intergenic 25.0%
! TTTGTTTGGGTCTATTTATA+AGG - Chr4:11058751-11058770 MsG0480018883.01.T01:intron 25.0%
!! AAACTTTTTATAGATGAAGC+TGG + Chr4:11056811-11056830 None:intergenic 25.0%
!! ACTAATTTTACTAACCAACA+AGG - Chr4:11057055-11057074 MsG0480018883.01.T01:CDS 25.0%
!! ATCAAAAGCTTTTACATTTC+TGG - Chr4:11061500-11061519 MsG0480018883.01.T01:CDS 25.0%
!! CATTTTGTTAGTCAATTTAG+TGG + Chr4:11061223-11061242 None:intergenic 25.0%
!! CTATTTCTCCCATAAATTAT+TGG - Chr4:11058696-11058715 MsG0480018883.01.T01:intron 25.0%
!! GAAGTATAAATCTTTTCCAA+TGG + Chr4:11058515-11058534 None:intergenic 25.0%
!! TTTTGTGCTTGATAAAGAAA+AGG + Chr4:11057274-11057293 None:intergenic 25.0%
!!! AGGTTAATAGGTTAGTTTTA+TGG - Chr4:11058271-11058290 MsG0480018883.01.T01:CDS 25.0%
!!! CTGTTTTTTTCTTCTTTTGT+CGG - Chr4:11057855-11057874 MsG0480018883.01.T01:intron 25.0%
!!! GATGTTTCAATTTTTAGCAA+TGG + Chr4:11061070-11061089 None:intergenic 25.0%
!!! GGCTTTTTAAGAAAAGTTAA+TGG - Chr4:11058364-11058383 MsG0480018883.01.T01:CDS 25.0%
!!! GTATGTACGTTTATTTTGAT+TGG - Chr4:11062348-11062367 MsG0480018883.01.T01:five_prime_UTR 25.0%
!!! GTATTCTTTTAAAAAGTGGA+AGG - Chr4:11058124-11058143 MsG0480018883.01.T01:CDS 25.0%
!!! GTTCTATATTTTTACTCAAC+AGG - Chr4:11060592-11060611 MsG0480018883.01.T01:intron 25.0%
!!! TTTTAGTTCTTGAATGTGTA+CGG - Chr4:11061120-11061139 MsG0480018883.01.T01:intron 25.0%
AAAAATTGAAACATCTGTGC+TGG - Chr4:11061075-11061094 MsG0480018883.01.T01:intron 30.0%
AAAATTGAAACATCTGTGCT+GGG - Chr4:11061076-11061095 MsG0480018883.01.T01:intron 30.0%
AAATTCACATGCTAGAAACA+AGG - Chr4:11061785-11061804 MsG0480018883.01.T01:CDS 30.0%
AAGAGAAGATCAAGGAAAAA+GGG - Chr4:11057150-11057169 MsG0480018883.01.T01:CDS 30.0%
AAGCAATAATTTCATCTTGC+CGG + Chr4:11058790-11058809 None:intergenic 30.0%
AATGAACGTTATGTATGTCT+TGG - Chr4:11059475-11059494 MsG0480018883.01.T01:intron 30.0%
AATTATGCTTCAAACCTTGT+TGG + Chr4:11057072-11057091 None:intergenic 30.0%
ACATCATTTGAGTATGTTTC+CGG - Chr4:11060662-11060681 MsG0480018883.01.T01:intron 30.0%
ACTAACAAAATGGATATTCG+AGG - Chr4:11061231-11061250 MsG0480018883.01.T01:intron 30.0%
ACTATATTGAAGGAATCCAT+TGG - Chr4:11058496-11058515 MsG0480018883.01.T01:intron 30.0%
AGAACACTCTAAATCTTTCA+TGG + Chr4:11057110-11057129 None:intergenic 30.0%
ATAAGGAAAAAAGTTGCAAC+CGG - Chr4:11058768-11058787 MsG0480018883.01.T01:intron 30.0%
CAAATGTTTCATGACTTTGT+AGG - Chr4:11062294-11062313 MsG0480018883.01.T01:five_prime_UTR 30.0%
CAATATCTATCTTGTGTATC+AGG - Chr4:11061708-11061727 MsG0480018883.01.T01:CDS 30.0%
CATATCAATGAAACAGCAAA+AGG + Chr4:11060437-11060456 None:intergenic 30.0%
CCAACTACAGTTCAATAATA+AGG - Chr4:11060769-11060788 MsG0480018883.01.T01:intron 30.0%
CCTTATTATTGAACTGTAGT+TGG + Chr4:11060772-11060791 None:intergenic 30.0%
CTAAAGCCAATCTTACATAA+AGG + Chr4:11058619-11058638 None:intergenic 30.0%
CTACAAAGTCATGAAACATT+TGG + Chr4:11062296-11062315 None:intergenic 30.0%
CTAGGACTTTATCAAAATCA+TGG - Chr4:11062132-11062151 MsG0480018883.01.T01:five_prime_UTR 30.0%
CTTTATCAAAATCATGGGAT+TGG - Chr4:11062138-11062157 MsG0480018883.01.T01:five_prime_UTR 30.0%
GAAGGTAATTATGTTATGAG+TGG - Chr4:11062225-11062244 MsG0480018883.01.T01:five_prime_UTR 30.0%
GAATCATAGAAAGGAAGTAA+AGG + Chr4:11057022-11057041 None:intergenic 30.0%
GAGACTTTGAATAACAATCA+AGG - Chr4:11057235-11057254 MsG0480018883.01.T01:CDS 30.0%
GAGTTGAATCTACAAAGATA+TGG - Chr4:11057421-11057440 MsG0480018883.01.T01:CDS 30.0%
GTTCTATACTTATTATCCGT+CGG - Chr4:11060485-11060504 MsG0480018883.01.T01:intron 30.0%
TAAACGAAATACACATTCTC+GGG - Chr4:11061296-11061315 MsG0480018883.01.T01:CDS 30.0%
TATCAAACATTGTCAACTGA+AGG + Chr4:11060550-11060569 None:intergenic 30.0%
TATGGATCTATGATTTATGG+TGG - Chr4:11057439-11057458 MsG0480018883.01.T01:intron 30.0%
TCCAAAAGATTCACAACAAA+AGG - Chr4:11061813-11061832 MsG0480018883.01.T01:CDS 30.0%
TGGTATATCAAATTTGACCA+AGG + Chr4:11061024-11061043 None:intergenic 30.0%
TGTGGTACATATTTAATTGG+TGG - Chr4:11059370-11059389 MsG0480018883.01.T01:intron 30.0%
TTACTCAACAGGTTTATAAG+CGG - Chr4:11060603-11060622 MsG0480018883.01.T01:intron 30.0%
TTAGATGGTAATAAGGTGAT+TGG - Chr4:11058593-11058612 MsG0480018883.01.T01:intron 30.0%
TTATACTTTAGTCAGGATCA+CGG - Chr4:11061401-11061420 MsG0480018883.01.T01:CDS 30.0%
TTATCTCTTCTACTTTGTTG+TGG + Chr4:11056959-11056978 None:intergenic 30.0%
TTGATTGCATAGTCATTTCT+TGG + Chr4:11060384-11060403 None:intergenic 30.0%
! ACATTTTAGATGCTTGAAGA+AGG - Chr4:11060736-11060755 MsG0480018883.01.T01:intron 30.0%
! ACTCGTTTTATACTTTAGTC+AGG - Chr4:11061394-11061413 MsG0480018883.01.T01:CDS 30.0%
! ATAATGTTGGCTAAACAAAC+CGG - Chr4:11061579-11061598 MsG0480018883.01.T01:CDS 30.0%
! CTTCAAGCATCTAAAATGTT+TGG + Chr4:11060735-11060754 None:intergenic 30.0%
! GAATCACAAAATAGGCATTT+TGG - Chr4:11062252-11062271 MsG0480018883.01.T01:five_prime_UTR 30.0%
! TATCTCTTCTACTTTGTTGT+GGG + Chr4:11056958-11056977 None:intergenic 30.0%
! TTCTTATATTTGGGACAAGA+AGG - Chr4:11059273-11059292 MsG0480018883.01.T01:intron 30.0%
! TTGCATTATATTGTGATGGA+TGG - Chr4:11058324-11058343 MsG0480018883.01.T01:CDS 30.0%
! TTTTTGCTTATAGTTGTGAC+CGG - Chr4:11059225-11059244 MsG0480018883.01.T01:intron 30.0%
!! AGTTCAGATTGTTGTTTCTT+TGG + Chr4:11056618-11056637 None:intergenic 30.0%
!! ATTGTTGTTTCTTTGGAAGA+AGG + Chr4:11056611-11056630 None:intergenic 30.0%
!! CATTTTGGAAGAGATGTAAT+TGG - Chr4:11062267-11062286 MsG0480018883.01.T01:five_prime_UTR 30.0%
!! TAAGATTGGCTTTAGTTGTT+TGG - Chr4:11058624-11058643 MsG0480018883.01.T01:intron 30.0%
!! TACCTTCATTATTGGTTTCA+AGG + Chr4:11062212-11062231 None:intergenic 30.0%
!! TCCTTTTGTTGTGAATCTTT+TGG + Chr4:11061817-11061836 None:intergenic 30.0%
!!! AGGTTTATTTTGTTAGTGGT+AGG - Chr4:11058144-11058163 MsG0480018883.01.T01:CDS 30.0%
!!! CTAGTTTAGCTTTTGTTTCA+TGG - Chr4:11058197-11058216 MsG0480018883.01.T01:CDS 30.0%
!!! GTGGTTTTGAATCACAAAAT+AGG - Chr4:11062244-11062263 MsG0480018883.01.T01:five_prime_UTR 30.0%
!!! GTTTCAATTTTTAGCAATGG+AGG + Chr4:11061067-11061086 None:intergenic 30.0%
!!! TGGAAGGTTTATTTTGTTAG+TGG - Chr4:11058140-11058159 MsG0480018883.01.T01:CDS 30.0%
!!! TTTAGCTTTTGTTTCATGGA+TGG - Chr4:11058201-11058220 MsG0480018883.01.T01:CDS 30.0%
!!! TTTTTGTCATTTTGTGTGGA+TGG - Chr4:11057910-11057929 MsG0480018883.01.T01:intron 30.0%
AAACAGCATCATGCCTTTAT+TGG + Chr4:11061044-11061063 None:intergenic 35.0%
AACATACCAATTAGGAGTCA+AGG - Chr4:11061970-11061989 MsG0480018883.01.T01:CDS 35.0%
AACTTATCTGTCGATGTAGA+CGG + Chr4:11061910-11061929 None:intergenic 35.0%
AAGGAAGAATCTCCAAGATT+TGG - Chr4:11060815-11060834 MsG0480018883.01.T01:intron 35.0%
AATGGGAAGGAATATATGCA+TGG - Chr4:11058382-11058401 MsG0480018883.01.T01:intron 35.0%
ACTATGTCACCCAATTTGTA+GGG - Chr4:11058454-11058473 MsG0480018883.01.T01:intron 35.0%
AGATAAGCTTAGAGTTGTTG+TGG - Chr4:11056973-11056992 MsG0480018883.01.T01:CDS 35.0%
AGATTTGGCAATAGTGAAAG+AGG - Chr4:11060830-11060849 MsG0480018883.01.T01:intron 35.0%
AGCAAATCATCCCTACAAAT+TGG + Chr4:11058467-11058486 None:intergenic 35.0%
AGGAATATATGCATGGAGAT+TGG - Chr4:11058389-11058408 MsG0480018883.01.T01:intron 35.0%
AGGCTAACATAAGGTTTGAT+TGG - Chr4:11058164-11058183 MsG0480018883.01.T01:CDS 35.0%
ATACTACCAACAGATGCAAT+CGG - Chr4:11060634-11060653 MsG0480018883.01.T01:intron 35.0%
ATGTGAATTTCTTCCACCAT+TGG + Chr4:11061775-11061794 None:intergenic 35.0%
ATGTGTGATGTTGGAAATCT+TGG - Chr4:11057595-11057614 MsG0480018883.01.T01:intron 35.0%
ATTAACACAAGTTTCACACG+AGG + Chr4:11059929-11059948 None:intergenic 35.0%
ATTCCTTAACCAATGCTCTT+GGG - Chr4:11060154-11060173 MsG0480018883.01.T01:intron 35.0%
ATTTCGATTAAGCAATGCCT+TGG - Chr4:11061004-11061023 MsG0480018883.01.T01:intron 35.0%
ATTTGGCAATAGTGAAAGAG+GGG - Chr4:11060832-11060851 MsG0480018883.01.T01:intron 35.0%
CAAGAGAAGATCAAGGAAAA+AGG - Chr4:11057149-11057168 MsG0480018883.01.T01:CDS 35.0%
CTTTCACTATTGCCAAATCT+TGG + Chr4:11060830-11060849 None:intergenic 35.0%
CTTTGTAGATTCAACTCCAA+AGG + Chr4:11057418-11057437 None:intergenic 35.0%
GAAACATAGAATGGCACTTA+CGG + Chr4:11060980-11060999 None:intergenic 35.0%
GATGAAAGTGACAAAGACAA+AGG + Chr4:11057370-11057389 None:intergenic 35.0%
GATTTGGCAATAGTGAAAGA+GGG - Chr4:11060831-11060850 MsG0480018883.01.T01:intron 35.0%
GCAAATCATCCCTACAAATT+GGG + Chr4:11058466-11058485 None:intergenic 35.0%
GGTTCATAAATGCAAGAGTA+AGG - Chr4:11061740-11061759 MsG0480018883.01.T01:CDS 35.0%
TAAAATGGTGCAAGTCATGA+CGG - Chr4:11060298-11060317 MsG0480018883.01.T01:intron 35.0%
TAAATGCAAGAGTAAGGCTT+TGG - Chr4:11061746-11061765 MsG0480018883.01.T01:CDS 35.0%
TACACATCATTCACTTGTGA+AGG - Chr4:11060259-11060278 MsG0480018883.01.T01:intron 35.0%
TCACTTATAATTAGGGCATG+AGG + Chr4:11058728-11058747 None:intergenic 35.0%
TCTTCACTCAATCTTTCCAA+AGG + Chr4:11057676-11057695 None:intergenic 35.0%
TGACTCCTAATTGGTATGTT+AGG + Chr4:11061970-11061989 None:intergenic 35.0%
TTAACACAAGTTTCACACGA+GGG + Chr4:11059928-11059947 None:intergenic 35.0%
TTATCGAGATAAAGCTTACC+TGG + Chr4:11061617-11061636 None:intergenic 35.0%
TTGAGTGAAGAAGATCCATT+TGG - Chr4:11057685-11057704 MsG0480018883.01.T01:intron 35.0%
TTGTAGAAATGTACTGCAGA+AGG - Chr4:11059802-11059821 MsG0480018883.01.T01:intron 35.0%
TTGTGTATCAGGTGTCAAAT+TGG - Chr4:11061719-11061738 MsG0480018883.01.T01:CDS 35.0%
TTTATCGCCAAACTTGCATA+AGG + Chr4:11060704-11060723 None:intergenic 35.0%
TTTGGAAGAGATGTAATTGG+TGG - Chr4:11062270-11062289 MsG0480018883.01.T01:five_prime_UTR 35.0%
! AAAGGTAGACTCATTTGTTG+TGG + Chr4:11062012-11062031 None:intergenic 35.0%
! AACAAACGTTTTCCTTGAAG+TGG + Chr4:11060210-11060229 None:intergenic 35.0%
! ACAGAAGCATATCCAGTAAA+TGG + Chr4:11057526-11057545 None:intergenic 35.0%
! AGTAATGTGTCATTGACACT+AGG - Chr4:11062114-11062133 MsG0480018883.01.T01:five_prime_UTR 35.0%
! AGTCTACCTTTTCAACATGT+AGG - Chr4:11062021-11062040 MsG0480018883.01.T01:CDS 35.0%
! ATGCAGCATGGACTATAATA+TGG + Chr4:11059722-11059741 None:intergenic 35.0%
! ATTGTTGACTATGCTTGATG+AGG - Chr4:11057729-11057748 MsG0480018883.01.T01:intron 35.0%
! TTTTCTATGGCTAGTGATGA+GGG - Chr4:11056914-11056933 MsG0480018883.01.T01:CDS 35.0%
! TTTTTCTATGGCTAGTGATG+AGG - Chr4:11056913-11056932 MsG0480018883.01.T01:CDS 35.0%
!! GAAACTAGAGAAGTATCTGA+AGG + Chr4:11061880-11061899 None:intergenic 35.0%
!! GAGAACGTTGATAATTCACT+AGG - Chr4:11059684-11059703 MsG0480018883.01.T01:intron 35.0%
!! GATTGGCCTTTATGTAAGAT+TGG - Chr4:11058610-11058629 MsG0480018883.01.T01:intron 35.0%
!! TACCTTGAAGGAACTTGTTA+AGG + Chr4:11059087-11059106 None:intergenic 35.0%
!! TGCTGATTCTTCTTTGATGA+TGG - Chr4:11057645-11057664 MsG0480018883.01.T01:intron 35.0%
!! TGGATATGCTTCTGTTTTGA+AGG - Chr4:11057531-11057550 MsG0480018883.01.T01:intron 35.0%
!! TTTGATGATGGAATCTCCTT+TGG - Chr4:11057657-11057676 MsG0480018883.01.T01:intron 35.0%
!!! CGTTTTTCAAGAGAAGATCA+AGG - Chr4:11057142-11057161 MsG0480018883.01.T01:CDS 35.0%
!!! CTTCTGTTTTGAAGGATTCT+AGG - Chr4:11057539-11057558 MsG0480018883.01.T01:intron 35.0%
!!! GAACTTGTTAAGGTGCTTTT+GGG + Chr4:11059077-11059096 None:intergenic 35.0%
AACAGGTTTATAAGCGGTAC+AGG - Chr4:11060609-11060628 MsG0480018883.01.T01:intron 40.0%
AAGTTTCACACGAGGGTTTA+AGG + Chr4:11059921-11059940 None:intergenic 40.0%
AATCGTTGAGCTGCACTTAA+AGG + Chr4:11062180-11062199 None:intergenic 40.0%
AATTGTAATCGCAATGACCG+TGG - Chr4:11061464-11061483 MsG0480018883.01.T01:CDS 40.0%
AGAACATAGTTCGTCTCAGA+GGG + Chr4:11060470-11060489 None:intergenic 40.0%
AGTTCTTGAATGTGTACGGA+GGG - Chr4:11061124-11061143 MsG0480018883.01.T01:intron 40.0%
ATAGGTTCCAACCGAAGAAA+AGG + Chr4:11059748-11059767 None:intergenic 40.0%
ATCTTGGAGATTCTTCCTTC+CGG + Chr4:11060814-11060833 None:intergenic 40.0%
ATGAAGCTGGATTGAAGTGA+TGG + Chr4:11056798-11056817 None:intergenic 40.0%
CACCTTAACAAGTTCCTTCA+AGG - Chr4:11059082-11059101 MsG0480018883.01.T01:intron 40.0%
CCAACACCTACATGTTGAAA+AGG + Chr4:11062030-11062049 None:intergenic 40.0%
CTAACTATCCCGTGATCTTA+GGG - Chr4:11060037-11060056 MsG0480018883.01.T01:intron 40.0%
GAAACCAGCTCAAGAATTGT+TGG - Chr4:11057567-11057586 MsG0480018883.01.T01:intron 40.0%
GACTATGTCACCCAATTTGT+AGG - Chr4:11058453-11058472 MsG0480018883.01.T01:intron 40.0%
GATTCCTTAACCAATGCTCT+TGG - Chr4:11060153-11060172 MsG0480018883.01.T01:intron 40.0%
GGATCTATGATTTATGGTGG+TGG - Chr4:11057442-11057461 MsG0480018883.01.T01:intron 40.0%
GGCCTTGAAACCAATAATGA+AGG - Chr4:11062207-11062226 MsG0480018883.01.T01:five_prime_UTR 40.0%
GTTAGTGGTAGGCTAACATA+AGG - Chr4:11058155-11058174 MsG0480018883.01.T01:CDS 40.0%
TAACCAATGCCCTAAGATCA+CGG + Chr4:11060049-11060068 None:intergenic 40.0%
TAGAACATAGTTCGTCTCAG+AGG + Chr4:11060471-11060490 None:intergenic 40.0%
TAGTTCTTGAATGTGTACGG+AGG - Chr4:11061123-11061142 MsG0480018883.01.T01:intron 40.0%
TCTTCCAACAATTCTTGAGC+TGG + Chr4:11057574-11057593 None:intergenic 40.0%
TGAGCTGCACTTAAAGGAAA+TGG + Chr4:11062174-11062193 None:intergenic 40.0%
TGTTGTCCTTGACTCCTAAT+TGG + Chr4:11061979-11061998 None:intergenic 40.0%
TGTTTGTGTCAGTGCTTCAT+AGG - Chr4:11060514-11060533 MsG0480018883.01.T01:intron 40.0%
TTAAGTGCAGCTCAACGATT+TGG - Chr4:11062180-11062199 MsG0480018883.01.T01:five_prime_UTR 40.0%
TTATTGCGACCATCACCAAA+TGG + Chr4:11057703-11057722 None:intergenic 40.0%
TTGGAAGAGATGTGTGATGT+TGG - Chr4:11057586-11057605 MsG0480018883.01.T01:intron 40.0%
TTTGGCAATAGTGAAAGAGG+GGG - Chr4:11060833-11060852 MsG0480018883.01.T01:intron 40.0%
! ACGAGGGTTTAAGGCTAAAA+TGG + Chr4:11059912-11059931 None:intergenic 40.0%
! CCTTTTCAACATGTAGGTGT+TGG - Chr4:11062027-11062046 MsG0480018883.01.T01:CDS 40.0%
! GAAGAAGATCCATTTGGTGA+TGG - Chr4:11057691-11057710 MsG0480018883.01.T01:intron 40.0%
! GGAATGAACATTGTTGGTAG+TGG - Chr4:11062048-11062067 MsG0480018883.01.T01:CDS 40.0%
! GGTGTTGGAATGAACATTGT+TGG - Chr4:11062042-11062061 MsG0480018883.01.T01:CDS 40.0%
! GTTATGTATGTCTTGGCTTG+TGG - Chr4:11059482-11059501 MsG0480018883.01.T01:intron 40.0%
! TTCATGATGCCACTTACAAG+CGG - Chr4:11061929-11061948 MsG0480018883.01.T01:CDS 40.0%
! TTCTACTTTGTTGTGGGACA+TGG + Chr4:11056952-11056971 None:intergenic 40.0%
!! AGTAAGGCTTTGGAAACCAA+TGG - Chr4:11061756-11061775 MsG0480018883.01.T01:CDS 40.0%
!! GTTGGAAATCTTGGTGTTTG+TGG - Chr4:11057604-11057623 MsG0480018883.01.T01:intron 40.0%
!! GTTGGTAGTGGAAGCAATAA+TGG - Chr4:11062060-11062079 MsG0480018883.01.T01:CDS 40.0%
!! TATATTGTGATGGATGGCCT+CGG - Chr4:11058330-11058349 MsG0480018883.01.T01:CDS 40.0%
!! TCTATGATTTATGGTGGTGG+AGG - Chr4:11057445-11057464 MsG0480018883.01.T01:intron 40.0%
!! TCTTGGTGTTTGTGGTGAAA+AGG - Chr4:11057612-11057631 MsG0480018883.01.T01:intron 40.0%
!!! GGAACTTGTTAAGGTGCTTT+TGG + Chr4:11059078-11059097 None:intergenic 40.0%
!!! TGATTTTGAAGTCACCACCA+CGG + Chr4:11061484-11061503 None:intergenic 40.0%
AAAGCCAATTGAGTTCACCG+AGG + Chr4:11058350-11058369 None:intergenic 45.0%
AACCAATGCCCTAAGATCAC+GGG + Chr4:11060048-11060067 None:intergenic 45.0%
AACCAATGCTCTTGGGACAT+TGG - Chr4:11060161-11060180 MsG0480018883.01.T01:intron 45.0%
ATCAGTAGGATAGCTGCACA+TGG + Chr4:11061550-11061569 None:intergenic 45.0%
CATAAGGAGCTGCATTGTTG+AGG + Chr4:11060688-11060707 None:intergenic 45.0%
CTGTGACTGTTCTTAGAGCA+TGG - Chr4:11060933-11060952 MsG0480018883.01.T01:intron 45.0%
GAACATAGTTCGTCTCAGAG+GGG + Chr4:11060469-11060488 None:intergenic 45.0%
GACAATGCTCGACACATTCA+AGG - Chr4:11061355-11061374 MsG0480018883.01.T01:CDS 45.0%
GCTAACTATCCCGTGATCTT+AGG - Chr4:11060036-11060055 MsG0480018883.01.T01:intron 45.0%
GCTCAAGATAACCTGACCTA+TGG + Chr4:11060868-11060887 None:intergenic 45.0%
GGTGGTTCAGTTCCATTTAC+TGG - Chr4:11057511-11057530 MsG0480018883.01.T01:intron 45.0%
TAACCTGACCTATGGCTGTA+AGG + Chr4:11060860-11060879 None:intergenic 45.0%
TACTTATTATCCGTCGGTCC+TGG - Chr4:11060491-11060510 MsG0480018883.01.T01:intron 45.0%
TGCAGCTCCTTATGCAAGTT+TGG - Chr4:11060694-11060713 MsG0480018883.01.T01:intron 45.0%
TGCTTATAGTTGTGACCGGA+GGG - Chr4:11059229-11059248 MsG0480018883.01.T01:intron 45.0%
TTACGACCGATTGCATCTGT+TGG + Chr4:11060643-11060662 None:intergenic 45.0%
TTGAGCAGCAACAACCTGTA+TGG - Chr4:11060882-11060901 MsG0480018883.01.T01:intron 45.0%
TTGCTTACATGTACACCCTC+CGG + Chr4:11059247-11059266 None:intergenic 45.0%
TTGCTTATAGTTGTGACCGG+AGG - Chr4:11059228-11059247 MsG0480018883.01.T01:intron 45.0%
! AACCAATGTCCCAAGAGCAT+TGG + Chr4:11060166-11060185 None:intergenic 45.0%
! AAGAAAAGGCACATGCAGCA+TGG + Chr4:11059734-11059753 None:intergenic 45.0%
! CGCATTTTCACACAAGCAAC+CGG - Chr4:11060792-11060811 MsG0480018883.01.T01:intron 45.0%
! TCATGATGCCACTTACAAGC+GGG - Chr4:11061930-11061949 MsG0480018883.01.T01:CDS 45.0%
! TGCTGCATGTGCCTTTTCTT+CGG - Chr4:11059734-11059753 MsG0480018883.01.T01:intron 45.0%
! TGTCGATGTAGACGGATTCT+CGG + Chr4:11061902-11061921 None:intergenic 45.0%
! TTTTCACACAAGCAACCGGA+AGG - Chr4:11060796-11060815 MsG0480018883.01.T01:intron 45.0%
!! AAGGCTTTGGAAACCAATGG+TGG - Chr4:11061759-11061778 MsG0480018883.01.T01:CDS 45.0%
!! ATTCAAGGGTTGGTTGAAGG+AGG - Chr4:11057472-11057491 MsG0480018883.01.T01:intron 45.0%
!! GCTAGTGATGAGGGTTTTGA+AGG - Chr4:11056923-11056942 MsG0480018883.01.T01:CDS 45.0%
!! GTGATTCAAGGGTTGGTTGA+AGG - Chr4:11057469-11057488 MsG0480018883.01.T01:intron 45.0%
!! TGTCCCAAGAGCATTGGTTA+AGG + Chr4:11060160-11060179 None:intergenic 45.0%
!!! TATTTTTTTTATTCTTTAAA+TGG - Chr4:11059048-11059067 MsG0480018883.01.T01:intron 5.0%
AAGAACAGTCACAGCACGCT+CGG + Chr4:11060927-11060946 None:intergenic 50.0%
ATCCCGTGATCTTAGGGCAT+TGG - Chr4:11060043-11060062 MsG0480018883.01.T01:intron 50.0%
ATGGCCTCGGTGAACTCAAT+TGG - Chr4:11058343-11058362 MsG0480018883.01.T01:CDS 50.0%
ATTTACGGCCCGCTTGTAAG+TGG + Chr4:11061941-11061960 None:intergenic 50.0%
TGTAATCGCAATGACCGTGG+TGG - Chr4:11061467-11061486 MsG0480018883.01.T01:CDS 50.0%
! GACTAGAGGGTGTACCTTGA+AGG + Chr4:11059099-11059118 None:intergenic 50.0%
! GCATGTGCCTTTTCTTCGGT+TGG - Chr4:11059738-11059757 MsG0480018883.01.T01:intron 50.0%
! GTGGTGGAGGTGTGATTCAA+GGG - Chr4:11057458-11057477 MsG0480018883.01.T01:intron 50.0%
! TGGAGGTGTGATTCAAGGGT+TGG - Chr4:11057462-11057481 MsG0480018883.01.T01:intron 50.0%
!! GAAGCACTGACACAAACACC+AGG + Chr4:11060512-11060531 None:intergenic 50.0%
!! GATCACGGTCGTGTTGCTTT+AGG - Chr4:11061416-11061435 MsG0480018883.01.T01:CDS 50.0%
!! GCAGCTCAACGATTTGGTCT+TGG - Chr4:11062186-11062205 MsG0480018883.01.T01:five_prime_UTR 50.0%
AGAACAGTCACAGCACGCTC+GGG + Chr4:11060926-11060945 None:intergenic 55.0%
AGGAGCTGCATTGTTGAGGC+CGG + Chr4:11060684-11060703 None:intergenic 55.0%
CCTGTATGGCGACCTCAAAG+AGG - Chr4:11060896-11060915 MsG0480018883.01.T01:intron 55.0%
GACACAAACACCAGGACCGA+CGG + Chr4:11060504-11060523 None:intergenic 55.0%
GGACCTTACAGCCATAGGTC+AGG - Chr4:11060854-11060873 MsG0480018883.01.T01:intron 55.0%
TACCTGGCTACGCGATAGAC+CGG + Chr4:11061601-11061620 None:intergenic 55.0%
TTGGTTGAAGGAGGAGGAGG+AGG - Chr4:11057481-11057500 MsG0480018883.01.T01:intron 55.0%
!! CAAGGGTTGGTTGAAGGAGG+AGG - Chr4:11057475-11057494 MsG0480018883.01.T01:intron 55.0%
!! CCTCTTTGAGGTCGCCATAC+AGG + Chr4:11060899-11060918 None:intergenic 55.0%
!! GGTGGTGGAGGTGTGATTCA+AGG - Chr4:11057457-11057476 MsG0480018883.01.T01:intron 55.0%
AACCGGTCTATCGCGTAGCC+AGG - Chr4:11061596-11061615 MsG0480018883.01.T01:CDS 60.0%
GAACAGTCACAGCACGCTCG+GGG + Chr4:11060925-11060944 None:intergenic 60.0%
GAGGGGGACCTTACAGCCAT+AGG - Chr4:11060849-11060868 MsG0480018883.01.T01:intron 60.0%
GTTGAAGGAGGAGGAGGAGG+AGG - Chr4:11057484-11057503 MsG0480018883.01.T01:intron 60.0%
!! GGGTTGGTTGAAGGAGGAGG+AGG - Chr4:11057478-11057497 MsG0480018883.01.T01:intron 60.0%
CGCTCGGGGAGTCCTCTTTG+AGG + Chr4:11060911-11060930 None:intergenic 65.0%
GGAGGAGGAGGAGGAAGTGG+TGG - Chr4:11057493-11057512 MsG0480018883.01.T01:intron 65.0%
GGAGGAGGAGGAGGAGGAAG+TGG - Chr4:11057490-11057509 MsG0480018883.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 11056592 11062409 11056592 ID=MsG0480018883.01;Name=MsG0480018883.01
Chr4 mRNA 11056592 11062409 11056592 ID=MsG0480018883.01.T01;Parent=MsG0480018883.01;Name=MsG0480018883.01.T01;_AED=0.50;_eAED=0.50;_QI=328|1|1|1|1|1|4|89|615
Chr4 exon 11056592 11057271 11056592 ID=MsG0480018883.01.T01:exon:6936;Parent=MsG0480018883.01.T01
Chr4 exon 11057384 11057444 11057384 ID=MsG0480018883.01.T01:exon:6935;Parent=MsG0480018883.01.T01
Chr4 exon 11058023 11058387 11058023 ID=MsG0480018883.01.T01:exon:6934;Parent=MsG0480018883.01.T01
Chr4 exon 11061251 11062409 11061251 ID=MsG0480018883.01.T01:exon:6933;Parent=MsG0480018883.01.T01
Chr4 five_prime_UTR 11062082 11062409 11062082 ID=MsG0480018883.01.T01:five_prime_utr;Parent=MsG0480018883.01.T01
Chr4 CDS 11061251 11062081 11061251 ID=MsG0480018883.01.T01:cds;Parent=MsG0480018883.01.T01
Chr4 CDS 11058023 11058387 11058023 ID=MsG0480018883.01.T01:cds;Parent=MsG0480018883.01.T01
Chr4 CDS 11057384 11057444 11057384 ID=MsG0480018883.01.T01:cds;Parent=MsG0480018883.01.T01
Chr4 CDS 11056681 11057271 11056681 ID=MsG0480018883.01.T01:cds;Parent=MsG0480018883.01.T01
Chr4 three_prime_UTR 11056592 11056680 11056592 ID=MsG0480018883.01.T01:three_prime_utr;Parent=MsG0480018883.01.T01
Gene Sequence

>MsG0480018883.01.T01

ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAATCAACAATCTCACGAACCTTTACTTCCTTTCTATGATTCTTCTTCTTTCATTACTAATTTTACTAACCAACAAGGTTTGAAGCATAATTCATGTTCTTCTAATTCCATGAAAGATTTAGAGTGTTCTAATTTGATGATGCGTTTTTCAAGAGAAGATCAAGGAAAAAGGGTCATGAATATGAATATTTCTTCTTCTAACAACTCTTGTTCAGTTTCTCATCATCCTTATTTTGAGACTTTGAATAACAATCAAGGAAATAATAATAACCCTTTTCTTTATCAAGCACAAAACATTCAAAATCTTAGACAATTTGATGAACAACATAGTAGTAGTACTAGTACTATGATGTTGAATAATCATGAACCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAATCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTGTGATTCAAGGGTTGGTTGAAGGAGGAGGAGGAGGAGGAAGTGGTGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTGTTGGAAGAGATGTGTGATGTTGGAAATCTTGGTGTTTGTGGTGAAAAGGTTGTTGTTGTTGCTGATTCTTCTTTGATGATGGAATCTCCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGGTCGCAATAAATCAAGATTGTTGACTATGCTTGATGAGGTTTATAAGCGGTACAGGCAATACTACCAACAGATGCAATCGGTCGTAACATCATTTGAGTATGTTTCCGGCCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCTATGTCCAAACATTTTAGATGCTTGAAGAAGGCAATTACTGACCAACTACAGTTCAATAATAAGGCGCATTTTCACACAAGCAACCGGAAGGAAGAATCTCCAAGATTTGGCAATAGTGAAAGAGGGGGACCTTACAGCCATAGGTCAGGTTATCTTGAGCAGCAACAACCTGTATGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGCTTTTTGAACACTTTCTGCATCCCTATCCTACTGATACAGATAAAATAATGTTGGCTAAACAAACCGGTCTATCGCGTAGCCAGGTGTCAAATTGGTTCATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATTCACATGCTAGAAACAAGGCAAACTCCAAAAGATTCACAACAAAAGGAAGAAAATTGTAGGAACAAATCAAGTGATCATCATCATTTGCCTTCAGATACTTCTCTAGTTTCCGAGAATCCGTCTACATCGACAGATAAGTTTCATGATGCCACTTACAAGCGGGCCGTAAATGAAATTCCTAACATACCAATTAGGAGTCAAGGACAACATCAACAACAACCACAACAAATGAGTCTACCTTTTCAACATGTAGGTGTTGGAATGAACATTGTTGGTAGTGGAAGCAATAATGGCAATCATAGTAATAATAATAATAATAATAATAGTAATGTGTCATTGACACTAGGACTTTATCAAAATCATGGGATTGGTTTAGCTGAACCATTTCCTTTAAGTGCAGCTCAACGATTTGGTCTTGGCCTTGAAACCAATAATGAAGGTAATTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGATGTAATTGGTGGCCAAATGTTTCATGACTTTGTAGGATGA

Protein sequence

>MsG0480018883.01.T01

MASDEGFEGYHVPQQSRRDKLRVVVAQNQQSHEPLLPFYDSSSFITNFTNQQGLKHNSCSSNSMKDLECSNLMMRFSREDQGKRVMNMNISSSNNSCSVSHHPYFETLNNNQGNNNNPFLYQAQNIQNLRQFDEQHSSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGVIQGLVEGGGGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEMCDVGNLGVCGEKVVVVADSSLMMESPLERLSEEDPFGDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQFNNKAHFHTSNRKEESPRFGNSERGGPYSHRSGYLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTPKDSQQKEENCRNKSSDHHHLPSDTSLVSENPSTSTDKFHDATYKRAVNEIPNIPIRSQGQHQQQPQQMSLPFQHVGVGMNIVGSGSNNGNHSNNNNNNNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGNYVMSGFESQNRHFGRDVIGGQMFHDFVG*