AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029999.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029999.01.T01 MTR_5g096290 97.418 426 11 0 8 433 348 773 0.0 841
MsG0580029999.01.T01 MTR_5g069290 39.709 481 209 13 31 433 391 868 1.76e-78 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029999.01.T01 AT3G07660 35.769 520 236 18 1 433 333 841 4.21e-61 213
MsG0580029999.01.T01 AT1G55820 32.701 422 219 15 33 433 198 575 3.67e-25 108
MsG0580029999.01.T01 AT3G13222 28.502 414 192 17 31 433 247 567 3.98e-15 77.8

Find 136 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCCGCGGCTGCAGCTGC+TGG 0.207112 5:+104920107 MsG0580029999.01.T01:CDS
TGCATTGGAGACAGGTAAAT+TGG 0.214964 5:-104920026 None:intergenic
CTCCGTGAGCAGCCTGTGTC+TGG 0.219809 5:-104920655 None:intergenic
CACTGCAGTATCTTCATTTC+CGG 0.236484 5:-104920267 None:intergenic
AATTTCATGTCTACCATGTT+AGG 0.248936 5:+104918743 MsG0580029999.01.T01:CDS
CAAGTGCCTGAGGCTTTAAA+AGG 0.306095 5:+104917033 MsG0580029999.01.T01:CDS
CAGCAGTCTCAAGCTGTCGC+TGG 0.314498 5:+104920734 MsG0580029999.01.T01:CDS
GCATTCACTGAAGAAGATTC+AGG 0.317221 5:-104917144 None:intergenic
GTTCAAAGTGCTCAAAACTA+TGG 0.320477 5:+104918716 MsG0580029999.01.T01:CDS
CTGTAGAGGTGGAGTTGGGC+TGG 0.331789 5:-104919916 None:intergenic
TCGCTCCAGCCTTGAATTGC+GGG 0.342458 5:-104920145 None:intergenic
ATTTGAGGGTAGTGAGCTTC+AGG 0.344869 5:+104918781 MsG0580029999.01.T01:CDS
CCTAGTCCGACCGTGAATAC+TGG 0.345879 5:+104920236 MsG0580029999.01.T01:CDS
CCAGCAGCTGCAGCCGCGGC+TGG 0.355020 5:-104920107 None:intergenic
TTAAAAGGTGGTCTGACATT+TGG 0.355222 5:+104917048 MsG0580029999.01.T01:CDS
GGCTCATATTGGAATTCCTT+CGG 0.356484 5:+104920181 MsG0580029999.01.T01:CDS
TGGAGCGAACACAGGAAATA+TGG 0.359123 5:+104920160 MsG0580029999.01.T01:CDS
ATCAAGATGATCTCCGTGTT+CGG 0.367141 5:-104918558 None:intergenic
GCACTTTGAACAGTCAGAAT+TGG 0.377482 5:-104918704 None:intergenic
ATGCTGAAACTGTTAATTCA+AGG 0.379384 5:+104917163 MsG0580029999.01.T01:CDS
GCATTGGAGACAGGTAAATT+GGG 0.381244 5:-104920025 None:intergenic
ACAGGAAATATGGCTCATAT+TGG 0.381667 5:+104920170 MsG0580029999.01.T01:CDS
GTTGTCCAGTTGTGTAGATC+TGG 0.392117 5:-104920307 None:intergenic
TCAGGCACTTGGAAATGGTT+TGG 0.399267 5:-104917021 None:intergenic
GAAACGGGCTGTGGAGAAAC+AGG 0.403673 5:-104919948 None:intergenic
AAGCCTCAGGCACTTGGAAA+TGG 0.404582 5:-104917026 None:intergenic
GTTCCCTCTCCCGCAATTCA+AGG 0.408553 5:+104920136 MsG0580029999.01.T01:CDS
GTTGCAAACCGGACATATCT+TGG 0.409196 5:-104920583 None:intergenic
TCTGAAGGCATATCTATAAC+TGG 0.409197 5:+104918623 MsG0580029999.01.T01:CDS
TCAAGATGATCTCCGTGTTC+GGG 0.409737 5:-104918557 None:intergenic
GCTCATATTGGAATTCCTTC+GGG 0.416308 5:+104920182 MsG0580029999.01.T01:CDS
GATCTACACAACTGGACAAC+TGG 0.418532 5:+104920310 MsG0580029999.01.T01:CDS
GTTCGGGCAATGGCACGCTT+TGG 0.419058 5:-104918541 None:intergenic
CCAGTATTCACGGTCGGACT+AGG 0.420427 5:-104920236 None:intergenic
TGTAGAGGTGGAGTTGGGCT+GGG 0.425157 5:-104919915 None:intergenic
GCTGCTCACGGAGCATTTCC+CGG 0.434441 5:+104920665 MsG0580029999.01.T01:CDS
GAAAACCAGATCTACACAAC+TGG 0.437940 5:+104920302 MsG0580029999.01.T01:CDS
GGCGGGCCTACAGTTTCAAC+AGG 0.437990 5:-104920758 None:intergenic
CAGCCGCGGCTGCAGCTGCT+GGG 0.442511 5:+104920108 MsG0580029999.01.T01:CDS
CAGCTTGAGACTGCTGCAAA+AGG 0.443273 5:-104920727 None:intergenic
AGTTGAGACCTCTGTGACAT+TGG 0.448927 5:-104916950 None:intergenic
GACTGCTGCAAAAGGGTAGA+AGG 0.449419 5:-104920719 None:intergenic
AGCTCTGTAGAGGTGGAGTT+GGG 0.449566 5:-104919920 None:intergenic
GTTAACAATACCTCCTGCTT+TGG 0.450263 5:-104918668 None:intergenic
TACCGCCTTCTCAGATCAAT+TGG 0.451052 5:+104920801 MsG0580029999.01.T01:CDS
AAAATTGATGCATTGGAGAC+AGG 0.452279 5:-104920034 None:intergenic
CTGCCCTGGTTGATAGATAC+CGG 0.454716 5:-104920684 None:intergenic
TCCGTGAGCAGCCTGTGTCT+GGG 0.456000 5:-104920654 None:intergenic
ATTGCAGACTGCAAGTTCTC+AGG 0.466939 5:+104919884 MsG0580029999.01.T01:intron
CCAGCTAACTTCTTCCCATA+TGG 0.466958 5:+104919990 MsG0580029999.01.T01:CDS
CTATATAACCTTGCCCCTCA+AGG 0.469727 5:+104920614 MsG0580029999.01.T01:CDS
ATTTCATGTCTACCATGTTA+GGG 0.475944 5:+104918744 MsG0580029999.01.T01:CDS
AGCAGTCTCAAGCTGTCGCT+GGG 0.477878 5:+104920735 MsG0580029999.01.T01:CDS
CCATATGGGAAGAAGTTAGC+TGG 0.481888 5:-104919990 None:intergenic
TTCCCTCAACAGCCATCAGC+TGG 0.482033 5:+104920071 MsG0580029999.01.T01:CDS
CCAGCCTTGAATTGCGGGAG+AGG 0.483908 5:-104920140 None:intergenic
TTCGCTCCAGCCTTGAATTG+CGG 0.486110 5:-104920146 None:intergenic
TGGTGGCCTAAAATAAGAAA+CGG 0.489748 5:-104919964 None:intergenic
GAGCTCTGTAGAGGTGGAGT+TGG 0.496736 5:-104919921 None:intergenic
GTCAGAATTGGATGGCCCTC+GGG 0.498580 5:-104918692 None:intergenic
GTGAATACTGGAAGCTCTGC+CGG 0.500908 5:+104920248 MsG0580029999.01.T01:CDS
AAGGTGAGATGTTGCCCTTG+AGG 0.511656 5:-104920629 None:intergenic
AGGTGAGATGTTGCCCTTGA+GGG 0.513539 5:-104920628 None:intergenic
GCTGATAAGATCCTGGAGGC+GGG 0.514023 5:-104920775 None:intergenic
TAGAGAATTAAGTTGCAAAC+CGG 0.515652 5:-104920594 None:intergenic
CCTCTCCCGCAATTCAAGGC+TGG 0.516531 5:+104920140 MsG0580029999.01.T01:CDS
CCGTGAGCAGCCTGTGTCTG+GGG 0.517112 5:-104920653 None:intergenic
GATCCCAGCAGCTGCAGCCG+CGG 0.517466 5:-104920111 None:intergenic
AAAGATTGAGCAGCCAAAGC+AGG 0.517956 5:+104918655 MsG0580029999.01.T01:CDS
GGTGGCCTAAAATAAGAAAC+GGG 0.522599 5:-104919963 None:intergenic
ACTCAGCAAGTTCAATTTGA+GGG 0.523341 5:+104918767 MsG0580029999.01.T01:CDS
GGGAAGAAGTTAGCTGGGTA+TGG 0.526076 5:-104919984 None:intergenic
TGCTGATAAGATCCTGGAGG+CGG 0.526275 5:-104920776 None:intergenic
TGATCTCCGTGTTCGGGCAA+TGG 0.526759 5:-104918551 None:intergenic
GGACTAGGAGCATATCCAAC+AGG 0.533992 5:-104920221 None:intergenic
CCCCAGACACAGGCTGCTCA+CGG 0.537435 5:+104920653 MsG0580029999.01.T01:CDS
ACATCTGCAAACGCATCGAC+AGG 0.539732 5:-104916916 None:intergenic
GAAACTGTAGGCCCGCCTCC+AGG 0.540189 5:+104920764 MsG0580029999.01.T01:CDS
CTAAAATAAGAAACGGGCTG+TGG 0.541113 5:-104919957 None:intergenic
GAATTCCAATTGATCTGAGA+AGG 0.541172 5:-104920806 None:intergenic
AGTCAGAATTGGATGGCCCT+CGG 0.541571 5:-104918693 None:intergenic
GACTCAGCAAGTTCAATTTG+AGG 0.543960 5:+104918766 MsG0580029999.01.T01:CDS
TCATATATCACTCCACCTGT+TGG 0.546789 5:+104920206 MsG0580029999.01.T01:CDS
TTGCCAGCTGATGGCTGTTG+AGG 0.547973 5:-104920074 None:intergenic
GATGTTGCCCTTGAGGGGCA+AGG 0.549942 5:-104920622 None:intergenic
GCTGGGCCTGTTGAAACTGT+AGG 0.551856 5:+104920752 MsG0580029999.01.T01:CDS
AGCTTGAGACTGCTGCAAAA+GGG 0.555438 5:-104920726 None:intergenic
GGCAGAGCTTCCAGTATTCA+CGG 0.556493 5:-104920246 None:intergenic
GAGGAACTTACAACAAAGGA+AGG 0.557950 5:-104918824 None:intergenic
AAACCGGACATATCTTGGCC+TGG 0.562751 5:-104920578 None:intergenic
TTCAAGGCTGGAGCGAACAC+AGG 0.563651 5:+104920152 MsG0580029999.01.T01:CDS
GGTAGCTGCTGATAAGATCC+TGG 0.567965 5:-104920782 None:intergenic
CTCAACTCAGTTGACTGCAC+AGG 0.568411 5:-104916982 None:intergenic
GCACCAGGCCAAGATATGTC+CGG 0.568756 5:+104920575 MsG0580029999.01.T01:CDS
ACTGAAGAAGATTCAGGAGT+GGG 0.570709 5:-104917138 None:intergenic
GGTATAGAGCTCTGTAGAGG+TGG 0.570730 5:-104919927 None:intergenic
CGTGAGCAGCCTGTGTCTGG+GGG 0.572469 5:-104920652 None:intergenic
CAGCCTTGAATTGCGGGAGA+GGG 0.573024 5:-104920139 None:intergenic
TGCCAGCTGATGGCTGTTGA+GGG 0.575376 5:-104920073 None:intergenic
TATATAACCTTGCCCCTCAA+GGG 0.576839 5:+104920615 MsG0580029999.01.T01:CDS
AGCGTGCCATTGCCCGAACA+CGG 0.582012 5:+104918545 MsG0580029999.01.T01:CDS
GGAGGTATTGTTAACTCCCG+AGG 0.592527 5:+104918676 MsG0580029999.01.T01:CDS
GGTGAAGTTACTGTCTGCCC+TGG 0.598871 5:-104920698 None:intergenic
AAAGAGACACTAGCTTCTGA+AGG 0.599821 5:+104918608 MsG0580029999.01.T01:CDS
AAGAAGTTAGCTGGGTATGG+TGG 0.600041 5:-104919981 None:intergenic
TTTCCCGGTATCTATCAACC+AGG 0.601306 5:+104920680 MsG0580029999.01.T01:CDS
AAACCATTTCCAAGTGCCTG+AGG 0.602183 5:+104917023 MsG0580029999.01.T01:CDS
TGCCCTGGTTGATAGATACC+GGG 0.602438 5:-104920683 None:intergenic
AGATACATGTTGCCAGCTGA+TGG 0.604442 5:-104920083 None:intergenic
CATATGGGAAGAAGTTAGCT+GGG 0.606074 5:-104919989 None:intergenic
TTTGAACAGTCAGAATTGGA+TGG 0.606885 5:-104918700 None:intergenic
GATTGAGCAGCCAAAGCAGG+AGG 0.610604 5:+104918658 MsG0580029999.01.T01:CDS
CTGTGCAGTCAACTGAGTTG+AGG 0.612178 5:+104916983 MsG0580029999.01.T01:CDS
GGTGAGATGTTGCCCTTGAG+GGG 0.619566 5:-104920627 None:intergenic
CATTGGAGACAGGTAAATTG+GGG 0.621229 5:-104920024 None:intergenic
GTGCCTGAGGCTTTAAAAGG+TGG 0.624955 5:+104917036 MsG0580029999.01.T01:CDS
GATGGAGGAACTTACAACAA+AGG 0.635043 5:-104918828 None:intergenic
CACTGAAGAAGATTCAGGAG+TGG 0.642648 5:-104917139 None:intergenic
GAGCTTCCAGTATTCACGGT+CGG 0.642719 5:-104920242 None:intergenic
ACAGGTATAGAGCTCTGTAG+AGG 0.643476 5:-104919930 None:intergenic
ACAACAAAGGAAGGGAAGTG+TGG 0.650206 5:-104918815 None:intergenic
CTAGGAGCATATCCAACAGG+TGG 0.652618 5:-104920218 None:intergenic
AACTTGCTGAGTCCCTAACA+TGG 0.655137 5:-104918756 None:intergenic
GCTGTGTGGATACATGCACC+AGG 0.661823 5:+104920560 MsG0580029999.01.T01:CDS
TTCCAATTGATCTGAGAAGG+CGG 0.672381 5:-104920803 None:intergenic
TTGGAGACAGGTAAATTGGG+GGG 0.679905 5:-104920022 None:intergenic
GAGGTATTGTTAACTCCCGA+GGG 0.680947 5:+104918677 MsG0580029999.01.T01:CDS
AGGAACTTACAACAAAGGAA+GGG 0.699468 5:-104918823 None:intergenic
CAACATGTATCTACCAGCCG+CGG 0.706772 5:+104920094 MsG0580029999.01.T01:CDS
TTCCCGGTATCTATCAACCA+GGG 0.707077 5:+104920681 MsG0580029999.01.T01:CDS
AGAGTGAAGGCTCTGCTGTG+TGG 0.711840 5:+104920546 MsG0580029999.01.T01:intron
AGCTGCTGATAAGATCCTGG+AGG 0.720533 5:-104920779 None:intergenic
ATTGGAGACAGGTAAATTGG+GGG 0.735261 5:-104920023 None:intergenic
TAAAACAGCCAATGTCACAG+AGG 0.735538 5:+104916942 MsG0580029999.01.T01:CDS
GCTGTTGAGGGAAACCATTG+TGG 0.747524 5:-104920061 None:intergenic
GGAGTGATATATGATCCCGA+AGG 0.756582 5:-104920197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAACAAGATTAAAT+AGG + Chr5:104917836-104917855 MsG0580029999.01.T01:intron 10.0%
!! TGGATTAATAATTAAATATA+AGG - Chr5:104919792-104919811 None:intergenic 10.0%
!!! TATTTATTTTTTGAAGAAAT+AGG - Chr5:104920380-104920399 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - Chr5:104917547-104917566 None:intergenic 15.0%
!! TTAATTATTAATCCATTTGT+TGG + Chr5:104919797-104919816 MsG0580029999.01.T01:intron 15.0%
!!! CAATTTTTTATTGAAATACT+TGG + Chr5:104920470-104920489 MsG0580029999.01.T01:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - Chr5:104917523-104917542 None:intergenic 15.0%
!!! TTTTTTTTTCCTTACATTTT+GGG + Chr5:104917907-104917926 MsG0580029999.01.T01:intron 15.0%
!!! TTTTTTTTTTCCTTACATTT+TGG + Chr5:104917906-104917925 MsG0580029999.01.T01:intron 15.0%
!! AAAAGATAGTATTAAGACAT+AGG - Chr5:104918905-104918924 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + Chr5:104917537-104917556 MsG0580029999.01.T01:intron 20.0%
!! AAAGATAGTATTAAGACATA+GGG - Chr5:104918904-104918923 None:intergenic 20.0%
!! AAATCTTAAGAAATACATGA+TGG - Chr5:104918849-104918868 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - Chr5:104917580-104917599 None:intergenic 20.0%
!! ACTTAAGTTTATTCTTTGTA+AGG - Chr5:104919635-104919654 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - Chr5:104917461-104917480 None:intergenic 20.0%
!! ATATTAAACCTCTTCATTAA+GGG + Chr5:104917941-104917960 MsG0580029999.01.T01:intron 20.0%
!! CTTACAAAGAATAAACTTAA+AGG + Chr5:104919457-104919476 MsG0580029999.01.T01:intron 20.0%
!! TATATTAAACCTCTTCATTA+AGG + Chr5:104917940-104917959 MsG0580029999.01.T01:intron 20.0%
!!! ATAGTTTTTTGTGTTTTCTT+TGG + Chr5:104917670-104917689 MsG0580029999.01.T01:intron 20.0%
!!! CTTTAAGTTTATTCTTTGTA+AGG - Chr5:104919459-104919478 None:intergenic 20.0%
!!! TATGTCTTAATACTATCTTT+TGG + Chr5:104918904-104918923 MsG0580029999.01.T01:intron 20.0%
!!! TTAATACTATCTTTTGGTTT+CGG + Chr5:104918910-104918929 MsG0580029999.01.T01:intron 20.0%
! AAAGAATGACAGAGATATTA+GGG - Chr5:104919860-104919879 None:intergenic 25.0%
! ATTTAGACAAAGTTAGTTAC+TGG + Chr5:104919382-104919401 MsG0580029999.01.T01:intron 25.0%
! GGTCAATGAAAAAGAATTTA+AGG + Chr5:104919599-104919618 MsG0580029999.01.T01:intron 25.0%
! GTAACTCAAAAAGATGAATT+GGG - Chr5:104918214-104918233 None:intergenic 25.0%
! GTTCATTATGGTTATTCTTT+GGG - Chr5:104918369-104918388 None:intergenic 25.0%
! TAAAGAATGACAGAGATATT+AGG - Chr5:104919861-104919880 None:intergenic 25.0%
! TAACTCAAAAAGATGAATTG+GGG - Chr5:104918213-104918232 None:intergenic 25.0%
! TAATCCTCCTCTTATAAAAA+AGG + Chr5:104918454-104918473 MsG0580029999.01.T01:intron 25.0%
! TACTTCAAACAACATAAACT+AGG + Chr5:104919327-104919346 MsG0580029999.01.T01:intron 25.0%
! TCATAGACAAAGAAATGATT+TGG + Chr5:104918154-104918173 MsG0580029999.01.T01:intron 25.0%
! TTGAAGAATAAACTTGAGAT+TGG + Chr5:104919666-104919685 MsG0580029999.01.T01:intron 25.0%
!! GATGTAAGAACAATTTTCAT+TGG + Chr5:104917710-104917729 MsG0580029999.01.T01:intron 25.0%
!! GTTTAAGCAAAAGTTTTTCT+TGG + Chr5:104917797-104917816 MsG0580029999.01.T01:intron 25.0%
!! TCAAAACATTGATTACAACA+TGG - Chr5:104918495-104918514 None:intergenic 25.0%
!! TTATTAATCCATTTGTTGGT+TGG + Chr5:104919801-104919820 MsG0580029999.01.T01:intron 25.0%
!! TTTTTGCTTACAATTTGAGA+CGG - Chr5:104917328-104917347 None:intergenic 25.0%
!!! ACAAATTGTTTTTGCTAAAG+CGG - Chr5:104917412-104917431 None:intergenic 25.0%
!!! TGATCTTCCTTTTTTATAAG+AGG - Chr5:104918464-104918483 None:intergenic 25.0%
!!! TGTTGTAATCAATGTTTTGA+TGG + Chr5:104918495-104918514 MsG0580029999.01.T01:intron 25.0%
!!! TTCTTTGGAATAAGTTTCAT+GGG + Chr5:104917685-104917704 MsG0580029999.01.T01:intron 25.0%
!!! TTTCTTTGGAATAAGTTTCA+TGG + Chr5:104917684-104917703 MsG0580029999.01.T01:intron 25.0%
!!! TTTTCATTGGCTATTGATTA+TGG + Chr5:104917723-104917742 MsG0580029999.01.T01:intron 25.0%
AACTCAAAAAGATGAATTGG+GGG - Chr5:104918212-104918231 None:intergenic 30.0%
AATGTCTAAACTACACATCT+TGG + Chr5:104919280-104919299 MsG0580029999.01.T01:intron 30.0%
AATTTCATGTCTACCATGTT+AGG + Chr5:104918743-104918762 MsG0580029999.01.T01:CDS 30.0%
ACCATAATGAACCTAAAAGT+TGG + Chr5:104918377-104918396 MsG0580029999.01.T01:intron 30.0%
ACTTGAGATTGGAAATCAAT+TGG + Chr5:104919677-104919696 MsG0580029999.01.T01:intron 30.0%
ATGCTGAAACTGTTAATTCA+AGG + Chr5:104917163-104917182 MsG0580029999.01.T01:CDS 30.0%
ATTTAGACAAAGTTAGCTAC+TGG + Chr5:104919557-104919576 MsG0580029999.01.T01:intron 30.0%
ATTTCATGTCTACCATGTTA+GGG + Chr5:104918744-104918763 MsG0580029999.01.T01:CDS 30.0%
GAATTAAAACCCCTAATTTG+GGG - Chr5:104918236-104918255 None:intergenic 30.0%
GGAATTAAAACCCCTAATTT+GGG - Chr5:104918237-104918256 None:intergenic 30.0%
GGTAACTCAAAAAGATGAAT+TGG - Chr5:104918215-104918234 None:intergenic 30.0%
GGTTCATTATGGTTATTCTT+TGG - Chr5:104918370-104918389 None:intergenic 30.0%
TCACTCATACACCATTTAAA+AGG - Chr5:104917265-104917284 None:intergenic 30.0%
TCTTAAGAAATACATGATGG+AGG - Chr5:104918846-104918865 None:intergenic 30.0%
TGGAATTAAAACCCCTAATT+TGG - Chr5:104918238-104918257 None:intergenic 30.0%
TGGCTTAAAAATTGATGCAT+TGG - Chr5:104920044-104920063 None:intergenic 30.0%
TGGTCAATGAAAAGAATGTA+AGG + Chr5:104919423-104919442 MsG0580029999.01.T01:intron 30.0%
TTAAGCATATATTAAGCCCT+TGG + Chr5:104919190-104919209 MsG0580029999.01.T01:intron 30.0%
TTAGTGCAAATTAATGTGAG+AGG - Chr5:104918985-104919004 None:intergenic 30.0%
TTAGTTACTGGTCAATGAAA+AGG + Chr5:104919394-104919413 MsG0580029999.01.T01:intron 30.0%
TTGTATTCATATGGTTGGAA+AGG + Chr5:104918948-104918967 MsG0580029999.01.T01:intron 30.0%
! AGTTTTCAATCATAAAGTCC+GGG - Chr5:104919093-104919112 None:intergenic 30.0%
! CAAAGAAAAGCACATACATT+AGG - Chr5:104917206-104917225 None:intergenic 30.0%
! GAGTTTTCAATCATAAAGTC+CGG - Chr5:104919094-104919113 None:intergenic 30.0%
! GCTATTGATTATGGAGAAAA+TGG + Chr5:104917732-104917751 MsG0580029999.01.T01:intron 30.0%
! GTCTGTTTTGCTTACATTTT+TGG + Chr5:104917869-104917888 MsG0580029999.01.T01:intron 30.0%
! TAGAAGAATTTTACAGACTC+TGG + Chr5:104920398-104920417 MsG0580029999.01.T01:intron 30.0%
! TAGAGAATTAAGTTGCAAAC+CGG - Chr5:104920597-104920616 None:intergenic 30.0%
! TATGTTGTTTGAAGTAAGCA+TGG - Chr5:104919323-104919342 None:intergenic 30.0%
! TCAGTAGTTTATTTGTTGAC+AGG + Chr5:104919240-104919259 MsG0580029999.01.T01:intron 30.0%
!! CATCAATTTTTAAGCCACAA+TGG + Chr5:104920047-104920066 MsG0580029999.01.T01:CDS 30.0%
!! GATACTGACTTGTATTCATA+TGG + Chr5:104918939-104918958 MsG0580029999.01.T01:intron 30.0%
!! TTTTTCCTTACATTTTGGGA+CGG + Chr5:104917911-104917930 MsG0580029999.01.T01:intron 30.0%
!!! AATTAGGGGTTTTAATTCCA+TGG + Chr5:104918238-104918257 MsG0580029999.01.T01:intron 30.0%
!!! ACCAACTTTTAGGTTCATTA+TGG - Chr5:104918381-104918400 None:intergenic 30.0%
!!! GTTTATGGCGAATGTTTTTT+TGG + Chr5:104918117-104918136 MsG0580029999.01.T01:intron 30.0%
!!! TCTTCCTTTTTTATAAGAGG+AGG - Chr5:104918461-104918480 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr5:104917451-104917432 None:intergenic 30.0%
!!! TTTTGAGTTACCCCAAATTA+GGG + Chr5:104918223-104918242 MsG0580029999.01.T01:intron 30.0%
!!! TTTTTGAGTTACCCCAAATT+AGG + Chr5:104918222-104918241 MsG0580029999.01.T01:intron 30.0%
!!! TTTTTTTTTCTGCAGAGTGA+AGG + Chr5:104920533-104920552 MsG0580029999.01.T01:intron 30.0%
AAAATTGATGCATTGGAGAC+AGG - Chr5:104920037-104920056 None:intergenic 35.0%
AAACGAAGGGAGTAAGAATT+TGG + Chr5:104917644-104917663 MsG0580029999.01.T01:intron 35.0%
AATGAAAGCCAGTGTTTGTT+TGG + Chr5:104918065-104918084 MsG0580029999.01.T01:intron 35.0%
AATGGTGTATGAGTGATGTA+TGG + Chr5:104917269-104917288 MsG0580029999.01.T01:intron 35.0%
ACAGGAAATATGGCTCATAT+TGG + Chr5:104920170-104920189 MsG0580029999.01.T01:CDS 35.0%
ACTAAAAGCTATTTGCTCTG+AGG + Chr5:104919061-104919080 MsG0580029999.01.T01:intron 35.0%
ACTCAGCAAGTTCAATTTGA+GGG + Chr5:104918767-104918786 MsG0580029999.01.T01:CDS 35.0%
AGGAACTTACAACAAAGGAA+GGG - Chr5:104918826-104918845 None:intergenic 35.0%
AGTAGTGTGCAGAGTATAAT+TGG - Chr5:104917499-104917518 None:intergenic 35.0%
ATGAAAGCCAGTGTTTGTTT+GGG + Chr5:104918066-104918085 MsG0580029999.01.T01:intron 35.0%
ATTAAGGGATGTTTGAGAGT+AGG + Chr5:104917956-104917975 MsG0580029999.01.T01:intron 35.0%
GAAAAATCTAGCAGTGTAAC+TGG + Chr5:104917096-104917115 MsG0580029999.01.T01:CDS 35.0%
GAACCTTCAAACAATACCAA+GGG - Chr5:104919209-104919228 None:intergenic 35.0%
GAATTCCAATTGATCTGAGA+AGG - Chr5:104920809-104920828 None:intergenic 35.0%
GGTCAATGAAAAGGAATAAC+TGG + Chr5:104919403-104919422 MsG0580029999.01.T01:intron 35.0%
GTGTATAACCAACCAACAAA+TGG - Chr5:104919812-104919831 None:intergenic 35.0%
TAGCTACTGGTCAATGAAAA+GGG + Chr5:104919570-104919589 MsG0580029999.01.T01:intron 35.0%
TCAAACATCCCTTAATGAAG+AGG - Chr5:104917952-104917971 None:intergenic 35.0%
TGAACCTTCAAACAATACCA+AGG - Chr5:104919210-104919229 None:intergenic 35.0%
TGGTGGCCTAAAATAAGAAA+CGG - Chr5:104919967-104919986 None:intergenic 35.0%
TGTATGAGTGATGTATGGTT+GGG + Chr5:104917274-104917293 MsG0580029999.01.T01:intron 35.0%
TTAAAAGGTGGTCTGACATT+TGG + Chr5:104917048-104917067 MsG0580029999.01.T01:CDS 35.0%
TTAAGGGATGTTTGAGAGTA+GGG + Chr5:104917957-104917976 MsG0580029999.01.T01:intron 35.0%
TTAGCTACTGGTCAATGAAA+AGG + Chr5:104919569-104919588 MsG0580029999.01.T01:intron 35.0%
TTTGAACAGTCAGAATTGGA+TGG - Chr5:104918703-104918722 None:intergenic 35.0%
TTTGAAGAAATAGGCACAGA+TGG - Chr5:104920371-104920390 None:intergenic 35.0%
! ACACTGCTAGATTTTTCACT+TGG - Chr5:104917093-104917112 None:intergenic 35.0%
! ACCATTTAAAAGGTGTGAGA+GGG - Chr5:104917255-104917274 None:intergenic 35.0%
! AGTTTATTTGTTGACAGGCT+TGG + Chr5:104919245-104919264 MsG0580029999.01.T01:intron 35.0%
! CTGACTTGTATTCATATGGT+TGG + Chr5:104918943-104918962 MsG0580029999.01.T01:intron 35.0%
! GTTCAAAGTGCTCAAAACTA+TGG + Chr5:104918716-104918735 MsG0580029999.01.T01:CDS 35.0%
! TCTGAAGGCATATCTATAAC+TGG + Chr5:104918623-104918642 MsG0580029999.01.T01:CDS 35.0%
! TGTATGTGCTTTTCTTTGCA+TGG + Chr5:104917208-104917227 MsG0580029999.01.T01:intron 35.0%
! TTTGAGTTACCCCAAATTAG+GGG + Chr5:104918224-104918243 MsG0580029999.01.T01:intron 35.0%
!! GCATGAGTTTATTTTCTCCA+TGG - Chr5:104918258-104918277 None:intergenic 35.0%
!! GTTATTCTTTGGGCTTTGTT+TGG - Chr5:104918359-104918378 None:intergenic 35.0%
!! TTGGGCTTTGTTTGGAAATT+GGG - Chr5:104918351-104918370 None:intergenic 35.0%
!! TTTGGGCTTTGTTTGGAAAT+TGG - Chr5:104918352-104918371 None:intergenic 35.0%
!!! GACACTCATTTTGAAACGAA+GGG + Chr5:104917631-104917650 MsG0580029999.01.T01:intron 35.0%
AAACTCTCCCAAACAAACAC+TGG - Chr5:104918076-104918095 None:intergenic 40.0%
AAGAAATAGGCACAGATGGA+TGG - Chr5:104920367-104920386 None:intergenic 40.0%
AAGCCCTTGGTATTGTTTGA+AGG + Chr5:104919203-104919222 MsG0580029999.01.T01:intron 40.0%
ACTGAAGAAGATTCAGGAGT+GGG - Chr5:104917141-104917160 None:intergenic 40.0%
AGCATGGAGTTGACTAAACA+TGG - Chr5:104919307-104919326 None:intergenic 40.0%
AGGGTTTGATGGGAATGATA+AGG + Chr5:104918040-104918059 MsG0580029999.01.T01:intron 40.0%
AGGTAAATTGGGGGGTAATA+GGG - Chr5:104920017-104920036 None:intergenic 40.0%
AGTGTGCAGAGTATAATTGG+AGG - Chr5:104917496-104917515 None:intergenic 40.0%
ATCAAGATGATCTCCGTGTT+CGG - Chr5:104918561-104918580 None:intergenic 40.0%
ATGAGAAGGGGAATGAAAGT+AGG + Chr5:104918005-104918024 MsG0580029999.01.T01:intron 40.0%
ATTGGAGACAGGTAAATTGG+GGG - Chr5:104920026-104920045 None:intergenic 40.0%
CACTGCAGTATCTTCATTTC+CGG - Chr5:104920270-104920289 None:intergenic 40.0%
CATATGGGAAGAAGTTAGCT+GGG - Chr5:104919992-104920011 None:intergenic 40.0%
CATTGGAGACAGGTAAATTG+GGG - Chr5:104920027-104920046 None:intergenic 40.0%
GAAAACCAGATCTACACAAC+TGG + Chr5:104920302-104920321 MsG0580029999.01.T01:CDS 40.0%
GACTCAGCAAGTTCAATTTG+AGG + Chr5:104918766-104918785 MsG0580029999.01.T01:CDS 40.0%
GAGGAACTTACAACAAAGGA+AGG - Chr5:104918827-104918846 None:intergenic 40.0%
GATGGAGGAACTTACAACAA+AGG - Chr5:104918831-104918850 None:intergenic 40.0%
GCACTTTGAACAGTCAGAAT+TGG - Chr5:104918707-104918726 None:intergenic 40.0%
GCATTCACTGAAGAAGATTC+AGG - Chr5:104917147-104917166 None:intergenic 40.0%
GCATTGGAGACAGGTAAATT+GGG - Chr5:104920028-104920047 None:intergenic 40.0%
GCTCATATTGGAATTCCTTC+GGG + Chr5:104920182-104920201 MsG0580029999.01.T01:CDS 40.0%
GGCTCATATTGGAATTCCTT+CGG + Chr5:104920181-104920200 MsG0580029999.01.T01:CDS 40.0%
GGGTTTGATGGGAATGATAA+GGG + Chr5:104918041-104918060 MsG0580029999.01.T01:intron 40.0%
GGTCAATGAAAAGGGATAAC+TGG + Chr5:104919578-104919597 MsG0580029999.01.T01:intron 40.0%
GGTGGCCTAAAATAAGAAAC+GGG - Chr5:104919966-104919985 None:intergenic 40.0%
GGTTTGATGGGAATGATAAG+GGG + Chr5:104918042-104918061 MsG0580029999.01.T01:intron 40.0%
GTGTATGAGTGATGTATGGT+TGG + Chr5:104917273-104917292 MsG0580029999.01.T01:intron 40.0%
GTGTGCAGAGTATAATTGGA+GGG - Chr5:104917495-104917514 None:intergenic 40.0%
GTTAACAATACCTCCTGCTT+TGG - Chr5:104918671-104918690 None:intergenic 40.0%
TAAAACAGCCAATGTCACAG+AGG + Chr5:104916942-104916961 MsG0580029999.01.T01:CDS 40.0%
TATATAACCTTGCCCCTCAA+GGG + Chr5:104920615-104920634 MsG0580029999.01.T01:CDS 40.0%
TCATATATCACTCCACCTGT+TGG + Chr5:104920206-104920225 MsG0580029999.01.T01:CDS 40.0%
TGAGAAGGGGAATGAAAGTA+GGG + Chr5:104918006-104918025 MsG0580029999.01.T01:intron 40.0%
TGCATTGGAGACAGGTAAAT+TGG - Chr5:104920029-104920048 None:intergenic 40.0%
TTCCAATTGATCTGAGAAGG+CGG - Chr5:104920806-104920825 None:intergenic 40.0%
TTTGGAAATTGGGAGGGTAA+GGG - Chr5:104918341-104918360 None:intergenic 40.0%
! AAAGAGACACTAGCTTCTGA+AGG + Chr5:104918608-104918627 MsG0580029999.01.T01:CDS 40.0%
! CACCATTTAAAAGGTGTGAG+AGG - Chr5:104917256-104917275 None:intergenic 40.0%
! TCCCTCTCACACCTTTTAAA+TGG + Chr5:104917251-104917270 MsG0580029999.01.T01:intron 40.0%
! TGCTTACAATTTGAGACGGA+GGG - Chr5:104917324-104917343 None:intergenic 40.0%
! TTGCTTACAATTTGAGACGG+AGG - Chr5:104917325-104917344 None:intergenic 40.0%
!! AAGCGGCACTCATTTTGAAA+CGG - Chr5:104917395-104917414 None:intergenic 40.0%
!! CCTAAAAGTTGGTGCTAGAA+AGG + Chr5:104918388-104918407 MsG0580029999.01.T01:intron 40.0%
!! CCTTTCTAGCACCAACTTTT+AGG - Chr5:104918391-104918410 None:intergenic 40.0%
!! CTAAAATAAGAAACGGGCTG+TGG - Chr5:104919960-104919979 None:intergenic 40.0%
!! GCTTTGTTTGGAAATTGGGA+GGG - Chr5:104918347-104918366 None:intergenic 40.0%
!! TGTTTGGGAGAGTTTTTGAG+AGG + Chr5:104918081-104918100 MsG0580029999.01.T01:intron 40.0%
!! TTGGTGCTAGAAAGGTGTAT+AGG + Chr5:104918396-104918415 MsG0580029999.01.T01:intron 40.0%
!!! AGAAAGAGCGTCATTTTAGC+TGG + Chr5:104919139-104919158 MsG0580029999.01.T01:intron 40.0%
!!! CACAGCCCGTTTCTTATTTT+AGG + Chr5:104919958-104919977 MsG0580029999.01.T01:CDS 40.0%
!!! CGACACTCATTTTGAAACGA+AGG + Chr5:104917630-104917649 MsG0580029999.01.T01:intron 40.0%
AAACCATTTCCAAGTGCCTG+AGG + Chr5:104917023-104917042 MsG0580029999.01.T01:CDS 45.0%
AAAGATTGAGCAGCCAAAGC+AGG + Chr5:104918655-104918674 MsG0580029999.01.T01:CDS 45.0%
AAGAAGTTAGCTGGGTATGG+TGG - Chr5:104919984-104920003 None:intergenic 45.0%
ACAACAAAGGAAGGGAAGTG+TGG - Chr5:104918818-104918837 None:intergenic 45.0%
ACAGGTATAGAGCTCTGTAG+AGG - Chr5:104919933-104919952 None:intergenic 45.0%
AGATACATGTTGCCAGCTGA+TGG - Chr5:104920086-104920105 None:intergenic 45.0%
AGCTTGAGACTGCTGCAAAA+GGG - Chr5:104920729-104920748 None:intergenic 45.0%
AGGGTTTGATGGGAATGAGA+AGG + Chr5:104917991-104918010 MsG0580029999.01.T01:intron 45.0%
AGTTGAGACCTCTGTGACAT+TGG - Chr5:104916953-104916972 None:intergenic 45.0%
ATAGGCACAGATGGATGGAA+AGG - Chr5:104920362-104920381 None:intergenic 45.0%
ATTGCAGACTGCAAGTTCTC+AGG + Chr5:104919884-104919903 MsG0580029999.01.T01:intron 45.0%
ATTTGAGGGTAGTGAGCTTC+AGG + Chr5:104918781-104918800 MsG0580029999.01.T01:CDS 45.0%
CACTGAAGAAGATTCAGGAG+TGG - Chr5:104917142-104917161 None:intergenic 45.0%
CAGGTAAATTGGGGGGTAAT+AGG - Chr5:104920018-104920037 None:intergenic 45.0%
CCAGCTAACTTCTTCCCATA+TGG + Chr5:104919990-104920009 MsG0580029999.01.T01:CDS 45.0%
CCATATGGGAAGAAGTTAGC+TGG - Chr5:104919993-104920012 None:intergenic 45.0%
CTATATAACCTTGCCCCTCA+AGG + Chr5:104920614-104920633 MsG0580029999.01.T01:CDS 45.0%
GAATTGGGGGAGACTTTAGA+GGG - Chr5:104918199-104918218 None:intergenic 45.0%
GATCTACACAACTGGACAAC+TGG + Chr5:104920310-104920329 MsG0580029999.01.T01:CDS 45.0%
GGAAAGAGGAGAGAATGAAG+GGG - Chr5:104918302-104918321 None:intergenic 45.0%
GGAGTGATATATGATCCCGA+AGG - Chr5:104920200-104920219 None:intergenic 45.0%
GGGAAAGAGGAGAGAATGAA+GGG - Chr5:104918303-104918322 None:intergenic 45.0%
GGGTTTGATGGGAATGAGAA+GGG + Chr5:104917992-104918011 MsG0580029999.01.T01:intron 45.0%
GGTAAATTGGGGGGTAATAG+GGG - Chr5:104920016-104920035 None:intergenic 45.0%
GGTTTGATGGGAATGAGAAG+GGG + Chr5:104917993-104918012 MsG0580029999.01.T01:intron 45.0%
GTTGCAAACCGGACATATCT+TGG - Chr5:104920586-104920605 None:intergenic 45.0%
GTTGTCCAGTTGTGTAGATC+TGG - Chr5:104920310-104920329 None:intergenic 45.0%
GTTTGGAAATTGGGAGGGTA+AGG - Chr5:104918342-104918361 None:intergenic 45.0%
TACACAACTGGACAACTGGT+TGG + Chr5:104920314-104920333 MsG0580029999.01.T01:intron 45.0%
TACCGCCTTCTCAGATCAAT+TGG + Chr5:104920801-104920820 MsG0580029999.01.T01:CDS 45.0%
TCAAGATGATCTCCGTGTTC+GGG - Chr5:104918560-104918579 None:intergenic 45.0%
TCAGGCACTTGGAAATGGTT+TGG - Chr5:104917024-104917043 None:intergenic 45.0%
TGAATTGGGGGAGACTTTAG+AGG - Chr5:104918200-104918219 None:intergenic 45.0%
TGGAGCGAACACAGGAAATA+TGG + Chr5:104920160-104920179 MsG0580029999.01.T01:CDS 45.0%
TTCCCGGTATCTATCAACCA+GGG + Chr5:104920681-104920700 MsG0580029999.01.T01:CDS 45.0%
TTCCTCCGTCCCAAAATGTA+AGG - Chr5:104917919-104917938 None:intergenic 45.0%
TTGGAGACAGGTAAATTGGG+GGG - Chr5:104920025-104920044 None:intergenic 45.0%
TTTCCCGGTATCTATCAACC+AGG + Chr5:104920680-104920699 MsG0580029999.01.T01:CDS 45.0%
!! AACTTGCTGAGTCCCTAACA+TGG - Chr5:104918759-104918778 None:intergenic 45.0%
!! AGAGTTTTTGAGAGGTGTGG+AGG + Chr5:104918089-104918108 MsG0580029999.01.T01:intron 45.0%
!! AGTTTTTGAGAGGTGTGGAG+GGG + Chr5:104918091-104918110 MsG0580029999.01.T01:intron 45.0%
!! CAAGTGCCTGAGGCTTTAAA+AGG + Chr5:104917033-104917052 MsG0580029999.01.T01:CDS 45.0%
!! GAGGTATTGTTAACTCCCGA+GGG + Chr5:104918677-104918696 MsG0580029999.01.T01:CDS 45.0%
!! GAGTTTTTGAGAGGTGTGGA+GGG + Chr5:104918090-104918109 MsG0580029999.01.T01:intron 45.0%
!! GGCTTTGTTTGGAAATTGGG+AGG - Chr5:104918348-104918367 None:intergenic 45.0%
!! TTTGCTCTGAGGTGATTTCC+CGG + Chr5:104919072-104919091 MsG0580029999.01.T01:intron 45.0%
!!! AGACCACCTTTTAAAGCCTC+AGG - Chr5:104917042-104917061 None:intergenic 45.0%
!!! CTTTTAAAGCCTCAGGCACT+TGG - Chr5:104917035-104917054 None:intergenic 45.0%
!!! GGCACTCATTTTGAAACGGA+GGG - Chr5:104917391-104917410 None:intergenic 45.0%
!!! TTCCTTACATTTTGGGACGG+AGG + Chr5:104917914-104917933 MsG0580029999.01.T01:intron 45.0%
AAACCGGACATATCTTGGCC+TGG - Chr5:104920581-104920600 None:intergenic 50.0%
AAAGTAGGGAGGAGAGGAGA+AGG + Chr5:104918020-104918039 MsG0580029999.01.T01:intron 50.0%
AAGCCTCAGGCACTTGGAAA+TGG - Chr5:104917029-104917048 None:intergenic 50.0%
AAGGTGAGATGTTGCCCTTG+AGG - Chr5:104920632-104920651 None:intergenic 50.0%
AAGTAGGGAGGAGAGGAGAA+GGG + Chr5:104918021-104918040 MsG0580029999.01.T01:intron 50.0%
AGAGGAGAGAATGAAGGGGA+AGG - Chr5:104918298-104918317 None:intergenic 50.0%
AGCTCTGTAGAGGTGGAGTT+GGG - Chr5:104919923-104919942 None:intergenic 50.0%
AGCTGCTGATAAGATCCTGG+AGG - Chr5:104920782-104920801 None:intergenic 50.0%
AGGAGAGAATGAAGGGGAAG+GGG - Chr5:104918296-104918315 None:intergenic 50.0%
AGGAGAGGAGAAGGGTTTGA+TGG + Chr5:104917980-104917999 MsG0580029999.01.T01:intron 50.0%
AGGGATGTTTGAGAGTAGGG+AGG + Chr5:104917960-104917979 MsG0580029999.01.T01:intron 50.0%
AGGTGAGATGTTGCCCTTGA+GGG - Chr5:104920631-104920650 None:intergenic 50.0%
AGTCAGAATTGGATGGCCCT+CGG - Chr5:104918696-104918715 None:intergenic 50.0%
CAACATGTATCTACCAGCCG+CGG + Chr5:104920094-104920113 MsG0580029999.01.T01:CDS 50.0%
CAGCTTGAGACTGCTGCAAA+AGG - Chr5:104920730-104920749 None:intergenic 50.0%
CTCAACTCAGTTGACTGCAC+AGG - Chr5:104916985-104917004 None:intergenic 50.0%
CTGTGCAGTCAACTGAGTTG+AGG + Chr5:104916983-104917002 MsG0580029999.01.T01:CDS 50.0%
GAAATTGGGAGGGTAAGGGA+AGG - Chr5:104918337-104918356 None:intergenic 50.0%
GAAGGGGAATGAAAGTAGGG+AGG + Chr5:104918009-104918028 MsG0580029999.01.T01:intron 50.0%
GACTGCTGCAAAAGGGTAGA+AGG - Chr5:104920722-104920741 None:intergenic 50.0%
GAGCTTCCAGTATTCACGGT+CGG - Chr5:104920245-104920264 None:intergenic 50.0%
GAGGAGAGAATGAAGGGGAA+GGG - Chr5:104918297-104918316 None:intergenic 50.0%
GCTGTTGAGGGAAACCATTG+TGG - Chr5:104920064-104920083 None:intergenic 50.0%
GGAATGAAAGTAGGGAGGAG+AGG + Chr5:104918014-104918033 MsG0580029999.01.T01:intron 50.0%
GGAGAGGAGAAGGGTTTGAT+GGG + Chr5:104917981-104918000 MsG0580029999.01.T01:intron 50.0%
GGCAGAGCTTCCAGTATTCA+CGG - Chr5:104920249-104920268 None:intergenic 50.0%
GGGAAGAAGTTAGCTGGGTA+TGG - Chr5:104919987-104920006 None:intergenic 50.0%
GGGGAAAGAGGAGAGAATGA+AGG - Chr5:104918304-104918323 None:intergenic 50.0%
GGTAGCTGCTGATAAGATCC+TGG - Chr5:104920785-104920804 None:intergenic 50.0%
GGTATAGAGCTCTGTAGAGG+TGG - Chr5:104919930-104919949 None:intergenic 50.0%
GTGAATACTGGAAGCTCTGC+CGG + Chr5:104920248-104920267 MsG0580029999.01.T01:CDS 50.0%
TAAGGGAAGGCAGGGTTTGA+GGG - Chr5:104918324-104918343 None:intergenic 50.0%
TGCTGATAAGATCCTGGAGG+CGG - Chr5:104920779-104920798 None:intergenic 50.0%
TGTTTGAGAGTAGGGAGGAG+AGG + Chr5:104917965-104917984 MsG0580029999.01.T01:intron 50.0%
TTCGCTCCAGCCTTGAATTG+CGG - Chr5:104920149-104920168 None:intergenic 50.0%
! ACATCTGCAAACGCATCGAC+AGG - Chr5:104916919-104916938 None:intergenic 50.0%
! CTAGGAGCATATCCAACAGG+TGG - Chr5:104920221-104920240 None:intergenic 50.0%
! GGACTAGGAGCATATCCAAC+AGG - Chr5:104920224-104920243 None:intergenic 50.0%
!! CTGCCCTGGTTGATAGATAC+CGG - Chr5:104920687-104920706 None:intergenic 50.0%
!! GGAGGTATTGTTAACTCCCG+AGG + Chr5:104918676-104918695 MsG0580029999.01.T01:CDS 50.0%
!! GGGAGAGTTTTTGAGAGGTG+TGG + Chr5:104918086-104918105 MsG0580029999.01.T01:intron 50.0%
!! GTGCCTGAGGCTTTAAAAGG+TGG + Chr5:104917036-104917055 MsG0580029999.01.T01:CDS 50.0%
!! TGCCCTGGTTGATAGATACC+GGG - Chr5:104920686-104920705 None:intergenic 50.0%
!!! CGGCACTCATTTTGAAACGG+AGG - Chr5:104917392-104917411 None:intergenic 50.0%
AAGGGAAGGCAGGGTTTGAG+GGG - Chr5:104918323-104918342 None:intergenic 55.0%
AGAGTAGGGAGGAGAGGAGA+AGG + Chr5:104917971-104917990 MsG0580029999.01.T01:intron 55.0%
AGAGTGAAGGCTCTGCTGTG+TGG + Chr5:104920546-104920565 MsG0580029999.01.T01:intron 55.0%
AGCAGTCTCAAGCTGTCGCT+GGG + Chr5:104920735-104920754 MsG0580029999.01.T01:CDS 55.0%
CAGCCTTGAATTGCGGGAGA+GGG - Chr5:104920142-104920161 None:intergenic 55.0%
CCAGTATTCACGGTCGGACT+AGG - Chr5:104920239-104920258 None:intergenic 55.0%
CCTAGTCCGACCGTGAATAC+TGG + Chr5:104920236-104920255 MsG0580029999.01.T01:CDS 55.0%
GAGAGAATGAAGGGGAAGGG+GGG - Chr5:104918294-104918313 None:intergenic 55.0%
GAGCTCTGTAGAGGTGGAGT+TGG - Chr5:104919924-104919943 None:intergenic 55.0%
GAGTAGGGAGGAGAGGAGAA+GGG + Chr5:104917972-104917991 MsG0580029999.01.T01:intron 55.0%
GATTGAGCAGCCAAAGCAGG+AGG + Chr5:104918658-104918677 MsG0580029999.01.T01:CDS 55.0%
GCACCAGGCCAAGATATGTC+CGG + Chr5:104920575-104920594 MsG0580029999.01.T01:CDS 55.0%
GCTGATAAGATCCTGGAGGC+GGG - Chr5:104920778-104920797 None:intergenic 55.0%
GCTGGGCCTGTTGAAACTGT+AGG + Chr5:104920752-104920771 MsG0580029999.01.T01:CDS 55.0%
GCTGTGTGGATACATGCACC+AGG + Chr5:104920560-104920579 MsG0580029999.01.T01:CDS 55.0%
GGAGAGAATGAAGGGGAAGG+GGG - Chr5:104918295-104918314 None:intergenic 55.0%
GGGGGTAATAGGGGCCATAT+GGG - Chr5:104920007-104920026 None:intergenic 55.0%
GGTGAAGTTACTGTCTGCCC+TGG - Chr5:104920701-104920720 None:intergenic 55.0%
GGTGAGATGTTGCCCTTGAG+GGG - Chr5:104920630-104920649 None:intergenic 55.0%
GGTGTGGAGGGGAAGGTTTA+TGG + Chr5:104918102-104918121 MsG0580029999.01.T01:intron 55.0%
GTAAGGGAAGGCAGGGTTTG+AGG - Chr5:104918325-104918344 None:intergenic 55.0%
GTCAGAATTGGATGGCCCTC+GGG - Chr5:104918695-104918714 None:intergenic 55.0%
GTTCCCTCTCCCGCAATTCA+AGG + Chr5:104920136-104920155 MsG0580029999.01.T01:CDS 55.0%
TCGCTCCAGCCTTGAATTGC+GGG - Chr5:104920148-104920167 None:intergenic 55.0%
TGATCTCCGTGTTCGGGCAA+TGG - Chr5:104918554-104918573 None:intergenic 55.0%
TGCCAGCTGATGGCTGTTGA+GGG - Chr5:104920076-104920095 None:intergenic 55.0%
TGTAGAGGTGGAGTTGGGCT+GGG - Chr5:104919918-104919937 None:intergenic 55.0%
TTCAAGGCTGGAGCGAACAC+AGG + Chr5:104920152-104920171 MsG0580029999.01.T01:CDS 55.0%
TTCCCTCAACAGCCATCAGC+TGG + Chr5:104920071-104920090 MsG0580029999.01.T01:CDS 55.0%
TTGCCAGCTGATGGCTGTTG+AGG - Chr5:104920077-104920096 None:intergenic 55.0%
! GGGGAGACTTTAGAGGGTTG+TGG - Chr5:104918193-104918212 None:intergenic 55.0%
! TTTGAGAGGTGTGGAGGGGA+AGG + Chr5:104918095-104918114 MsG0580029999.01.T01:intron 55.0%
!! GAAACGGGCTGTGGAGAAAC+AGG - Chr5:104919951-104919970 None:intergenic 55.0%
CAGCAGTCTCAAGCTGTCGC+TGG + Chr5:104920734-104920753 MsG0580029999.01.T01:CDS 60.0%
CCAGCCTTGAATTGCGGGAG+AGG - Chr5:104920143-104920162 None:intergenic 60.0%
CCTCTCCCGCAATTCAAGGC+TGG + Chr5:104920140-104920159 MsG0580029999.01.T01:CDS 60.0%
CTGTAGAGGTGGAGTTGGGC+TGG - Chr5:104919919-104919938 None:intergenic 60.0%
GATGTTGCCCTTGAGGGGCA+AGG - Chr5:104920625-104920644 None:intergenic 60.0%
GGCAGGGTTTGAGGGGAAAG+AGG - Chr5:104918316-104918335 None:intergenic 60.0%
GGCGGGCCTACAGTTTCAAC+AGG - Chr5:104920761-104920780 None:intergenic 60.0%
GGGGGGTAATAGGGGCCATA+TGG - Chr5:104920008-104920027 None:intergenic 60.0%
GTTCGGGCAATGGCACGCTT+TGG - Chr5:104918544-104918563 None:intergenic 60.0%
TCCGTGAGCAGCCTGTGTCT+GGG - Chr5:104920657-104920676 None:intergenic 60.0%
TCTCACCTTCCCCCAGACAC+AGG + Chr5:104920643-104920662 MsG0580029999.01.T01:CDS 60.0%
TGGGAGGGTAAGGGAAGGCA+GGG - Chr5:104918332-104918351 None:intergenic 60.0%
TTGGGAGGGTAAGGGAAGGC+AGG - Chr5:104918333-104918352 None:intergenic 60.0%
! AGCGTGCCATTGCCCGAACA+CGG + Chr5:104918545-104918564 MsG0580029999.01.T01:CDS 60.0%
! GCTGCTCACGGAGCATTTCC+CGG + Chr5:104920665-104920684 MsG0580029999.01.T01:CDS 60.0%
AGCAGCCTGTGTCTGGGGGA+AGG - Chr5:104920651-104920670 None:intergenic 65.0%
CCCCAGACACAGGCTGCTCA+CGG + Chr5:104920653-104920672 MsG0580029999.01.T01:CDS 65.0%
CCGTGAGCAGCCTGTGTCTG+GGG - Chr5:104920656-104920675 None:intergenic 65.0%
CGTGAGCAGCCTGTGTCTGG+GGG - Chr5:104920655-104920674 None:intergenic 65.0%
CTCCGTGAGCAGCCTGTGTC+TGG - Chr5:104920658-104920677 None:intergenic 65.0%
GAAACTGTAGGCCCGCCTCC+AGG + Chr5:104920764-104920783 MsG0580029999.01.T01:CDS 65.0%
GATCCCAGCAGCTGCAGCCG+CGG - Chr5:104920114-104920133 None:intergenic 70.0%
CAGCCGCGGCTGCAGCTGCT+GGG + Chr5:104920108-104920127 MsG0580029999.01.T01:CDS 75.0%
! CCAGCAGCTGCAGCCGCGGC+TGG - Chr5:104920110-104920129 None:intergenic 80.0%
! CCAGCCGCGGCTGCAGCTGC+TGG + Chr5:104920107-104920126 MsG0580029999.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 104916913 104920838 104916913 ID=MsG0580029999.01;Name=MsG0580029999.01
Chr5 mRNA 104916913 104920838 104916913 ID=MsG0580029999.01.T01;Parent=MsG0580029999.01;Name=MsG0580029999.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|433
Chr5 exon 104916913 104917184 104916913 ID=MsG0580029999.01.T01:exon:21989;Parent=MsG0580029999.01.T01
Chr5 exon 104918538 104918835 104918538 ID=MsG0580029999.01.T01:exon:21990;Parent=MsG0580029999.01.T01
Chr5 exon 104919891 104920331 104919891 ID=MsG0580029999.01.T01:exon:21991;Parent=MsG0580029999.01.T01
Chr5 exon 104920548 104920838 104920548 ID=MsG0580029999.01.T01:exon:21992;Parent=MsG0580029999.01.T01
Chr5 CDS 104916913 104917184 104916913 ID=MsG0580029999.01.T01:cds;Parent=MsG0580029999.01.T01
Chr5 CDS 104918538 104918835 104918538 ID=MsG0580029999.01.T01:cds;Parent=MsG0580029999.01.T01
Chr5 CDS 104919891 104920331 104919891 ID=MsG0580029999.01.T01:cds;Parent=MsG0580029999.01.T01
Chr5 CDS 104920548 104920838 104920548 ID=MsG0580029999.01.T01:cds;Parent=MsG0580029999.01.T01
Gene Sequence

>MsG0580029999.01.T01

ATGCCTGTCGATGCGTTTGCAGATGTTTCTAAAACAGCCAATGTCACAGAGGTCTCAACTTCAGAAGCTCCTGTGCAGTCAACTGAGTTGAGGCAACATGTTACTTTTCCAAACCATTTCCAAGTGCCTGAGGCTTTAAAAGGTGGTCTGACATTTGGAAGCTTCGATACTTTTGATCCAAGTGAAAAATCTAGCAGTGTAACTGGTTGTGACAATAGCACTTCTCCCACTCCTGAATCTTCTTCAGTGAATGCTGAAACTGTTAATTCAAGCAACCAAAGCGTGCCATTGCCCGAACACGGAGATCATCTTGATCATGCACATTCTTCATCTTATTTAATTAAAGAGACACTAGCTTCTGAAGGCATATCTATAACTGGTAATGATTCAAAGATTGAGCAGCCAAAGCAGGAGGTATTGTTAACTCCCGAGGGCCATCCAATTCTGACTGTTCAAAGTGCTCAAAACTATGGTTTGAATTTCATGTCTACCATGTTAGGGACTCAGCAAGTTCAATTTGAGGGTAGTGAGCTTCAGGCGCAAGAAACACCACACTTCCCTTCCTTTGTTACTGCAAGTTCTCAGGCTGTGTCTCCCAGCCCAACTCCACCTCTACAGAGCTCTATACCTGTTTCTCCACAGCCCGTTTCTTATTTTAGGCCACCATACCCAGCTAACTTCTTCCCATATGGCCCCTATTACCCCCCAATTTACCTGTCTCCAATGCATCAATTTTTAAGCCACAATGGTTTCCCTCAACAGCCATCAGCTGGCAACATGTATCTACCAGCCGCGGCTGCAGCTGCTGGGATCAAGTTCCCTCTCCCGCAATTCAAGGCTGGAGCGAACACAGGAAATATGGCTCATATTGGAATTCCTTCGGGATCATATATCACTCCACCTGTTGGATATGCTCCTAGTCCGACCGTGAATACTGGAAGCTCTGCCGGAAATGAAGATACTGCAGTGTCTCAGTTGAAAGAAAACCAGATCTACACAACTGGACAACTGAGTGAAGGCTCTGCTGTGTGGATACATGCACCAGGCCAAGATATGTCCGGTTTGCAACTTAATTCTCTATATAACCTTGCCCCTCAAGGGCAACATCTCACCTTCCCCCAGACACAGGCTGCTCACGGAGCATTTCCCGGTATCTATCAACCAGGGCAGACAGTAACTTCACCTTCTACCCTTTTGCAGCAGTCTCAAGCTGTCGCTGGGCCTGTTGAAACTGTAGGCCCGCCTCCAGGATCTTATCAGCAGCTACCGCCTTCTCAGATCAATTGGAATTCTAATTTTTAG

Protein sequence

>MsG0580029999.01.T01

MPVDAFADVSKTANVTEVSTSEAPVQSTELRQHVTFPNHFQVPEALKGGLTFGSFDTFDPSEKSSSVTGCDNSTSPTPESSSVNAETVNSSNQSVPLPEHGDHLDHAHSSSYLIKETLASEGISITGNDSKIEQPKQEVLLTPEGHPILTVQSAQNYGLNFMSTMLGTQQVQFEGSELQAQETPHFPSFVTASSQAVSPSPTPPLQSSIPVSPQPVSYFRPPYPANFFPYGPYYPPIYLSPMHQFLSHNGFPQQPSAGNMYLPAAAAAAGIKFPLPQFKAGANTGNMAHIGIPSGSYITPPVGYAPSPTVNTGSSAGNEDTAVSQLKENQIYTTGQLSEGSAVWIHAPGQDMSGLQLNSLYNLAPQGQHLTFPQTQAAHGAFPGIYQPGQTVTSPSTLLQQSQAVAGPVETVGPPPGSYQQLPPSQINWNSNF*