AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279400 MtrunA17_Chr1g0170131 52.193 228 82 3 1 227 1 202 2.76e-53 174
Msa1279400 MtrunA17_Chr1g0156951 50.000 228 86 4 1 227 1 201 1.33e-51 170
Msa1279400 MtrunA17_Chr5g0420551 39.526 253 129 4 7 258 3 232 1.26e-34 127
Msa1279400 MtrunA17_Chr2g0286581 46.087 115 55 2 1 114 12 120 4.29e-24 97.4
Msa1279400 MtrunA17_Chr2g0287311 63.158 76 27 1 1 75 12 87 8.77e-23 94.4
Msa1279400 MtrunA17_Chr2g0287351 51.648 91 43 1 1 90 1 91 9.77e-22 93.2
Msa1279400 MtrunA17_Chr2g0287371 56.579 76 32 1 1 75 5 80 4.81e-20 87.4
Msa1279400 MtrunA17_Chr2g0287391 58.667 75 29 2 2 74 3 77 1.16e-18 82.4
Msa1279400 MtrunA17_Chr2g0287321 56.522 69 29 1 8 75 18 86 1.43e-18 82.0
Msa1279400 MtrunA17_Chr2g0287401 54.667 75 33 1 1 74 2 76 7.68e-18 79.7
Msa1279400 MtrunA17_Chr2g0287421 57.534 73 30 1 1 72 2 74 1.02e-17 79.7
Msa1279400 MtrunA17_Chr2g0287331 53.623 69 31 1 8 75 5 73 6.16e-17 75.9
Msa1279400 MtrunA17_Chr2g0287301 49.315 73 36 1 1 72 12 84 7.38e-16 73.9
Msa1279400 MtrunA17_Chr2g0288061 47.945 73 37 1 8 79 11 83 2.00e-15 73.6
Msa1279400 MtrunA17_Chr4g0019961 51.316 76 36 1 1 75 1 76 3.75e-14 70.1
Msa1279400 MtrunA17_Chr6g0450431 56.897 58 22 1 183 240 1 55 1.79e-11 60.1
Msa1279400 MtrunA17_Chr4g0060971 54.545 44 20 0 13 56 42 85 4.39e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 93 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGATAGAATGGTATTAAA+AGG 0.219863 8_3:+16344551 Msa1279400:CDS
ATTGTCTTTGGGGTTCTATT+CGG 0.240004 8_3:+16345840 Msa1279400:CDS
GGTGGCCTGCTATTGTCTTT+GGG 0.240339 8_3:+16345829 Msa1279400:CDS
TGGTGGCCTGCTATTGTCTT+TGG 0.250761 8_3:+16345828 Msa1279400:CDS
CTAGTCTTTATTTCCATTAG+TGG 0.307809 8_3:+16346040 Msa1279400:CDS
CTGGTCTTGTTGCTGGGAGC+TGG 0.316668 8_3:+16345984 Msa1279400:CDS
TGTGGCATAGCAGGGTTCTT+TGG 0.318245 8_3:+16345871 Msa1279400:CDS
TTGTCTTTGGGGTTCTATTC+GGG 0.328544 8_3:+16345841 Msa1279400:CDS
TTCCTAGGACATTTCACCTT+TGG 0.357310 8_3:-16346363 None:intergenic
AAGGAACTTTATAAAACTTA+AGG 0.380287 8_3:-16346199 None:intergenic
TGAAATTAAGCGAAAACATA+AGG 0.380397 8_3:-16346218 None:intergenic
CGAGGAAGAGGAAGAGGAAG+AGG 0.385217 8_3:+16344250 Msa1279400:CDS
GAAGAAGAAGGGAGAAAATC+TGG 0.388008 8_3:+16344412 Msa1279400:CDS
GGTTAAGAGAAGAATTAGTT+TGG 0.388719 8_3:+16345753 Msa1279400:intron
AGAGGAAGTGGAAGAGGAAG+AGG 0.393476 8_3:+16344169 Msa1279400:CDS
AGAGGAAGAGGAAGAGGAAG+AGG 0.394447 8_3:+16344187 Msa1279400:CDS
AGAGGAAGAGGAAGAGGAAG+AGG 0.394447 8_3:+16344193 Msa1279400:CDS
GGTGTTGACTGTGGCATAGC+AGG 0.394517 8_3:+16345862 Msa1279400:CDS
AGAAGAAGAGGAAGTGGAAG+AGG 0.394857 8_3:+16344163 Msa1279400:CDS
TGCTGGGAGCTGGCTGCAGC+GGG 0.406548 8_3:+16345994 Msa1279400:CDS
AGAAGACGAAGAAGAGGAAG+AGG 0.408049 8_3:+16344217 Msa1279400:CDS
AGTGGAAGAGGAAGAGGAAG+AGG 0.420722 8_3:+16344175 Msa1279400:CDS
GATAATCAAGGTGGCTAAGT+TGG 0.425265 8_3:+16344457 Msa1279400:CDS
TTCAAATTGCGTATCAAAGA+AGG 0.426091 8_3:+16344128 Msa1279400:CDS
AGAGGAAGAGGAAGAGGAAG+AGG 0.426997 8_3:+16344181 Msa1279400:CDS
ACATTTCACCTTTGGAGAAA+GGG 0.432582 8_3:-16346355 None:intergenic
ATTTCGATCAACAGTTCATC+CGG 0.433150 8_3:-16343948 None:intergenic
GACATTTCACCTTTGGAGAA+AGG 0.438348 8_3:-16346356 None:intergenic
GTGGCCTGCTATTGTCTTTG+GGG 0.438758 8_3:+16345830 Msa1279400:CDS
TTTGTGTTCTAGTGGTTAGT+GGG 0.451182 8_3:+16346106 Msa1279400:three_prime_UTR
GGAAGACGAAGACGAGGAAG+AGG 0.455608 8_3:+16344238 Msa1279400:CDS
GAGGAAGAGGAAGAGGAAGA+CGG 0.460043 8_3:+16344257 Msa1279400:CDS
GTTTGTGTTCTAGTGGTTAG+TGG 0.460802 8_3:+16346105 Msa1279400:three_prime_UTR
CGAAGACGAGGAAGAGGAAG+AGG 0.461269 8_3:+16344244 Msa1279400:CDS
GTGAGGTGAATGGTGATTTG+AGG 0.461694 8_3:+16345782 Msa1279400:CDS
AGAGAACCACTTGAAGAAGA+AGG 0.464660 8_3:+16344400 Msa1279400:CDS
AGAGGAAGAAGACGAAGAAG+AGG 0.466090 8_3:+16344211 Msa1279400:CDS
TTATAGCCGTGGTGGCTTTG+TGG 0.474791 8_3:+16346017 Msa1279400:CDS
TTTCTCCCTTCTTCTTCAAG+TGG 0.481048 8_3:-16344406 None:intergenic
TAAGTTGGATAATTATTTGA+TGG 0.483560 8_3:+16344472 Msa1279400:CDS
ACCACCCTTGCTTCCGCCAT+CGG 0.486775 8_3:-16343906 None:intergenic
AGGATAGAATGGTATTAAAA+GGG 0.488471 8_3:+16344552 Msa1279400:CDS
AGTTGATTCAAGAAATCTCC+TGG 0.489917 8_3:+16343980 Msa1279400:CDS
GAAAGGGAAGTCAATGTGTT+CGG 0.492655 8_3:-16346339 None:intergenic
TGCAAACGCACCTCAACTCC+AGG 0.496261 8_3:-16343998 None:intergenic
CAATAAGTTAAAAGAAAGAC+AGG 0.499195 8_3:+16346239 Msa1279400:three_prime_UTR
TGAGGTGCGTTTGCAAGTTG+TGG 0.509786 8_3:+16344006 Msa1279400:CDS
TCAATGTGTTCGGCATCAAA+AGG 0.516566 8_3:-16346329 None:intergenic
GATAGTGTTGATGTTGATGC+TGG 0.519920 8_3:+16344314 Msa1279400:CDS
TTGCTGGGAGCTGGCTGCAG+CGG 0.522395 8_3:+16345993 Msa1279400:CDS
TTGGCCTCTTGTGAGGTGAA+TGG 0.526844 8_3:+16345772 Msa1279400:CDS
AGAACCCCAAAGACAATAGC+AGG 0.529164 8_3:-16345834 None:intergenic
CAATTCTCTAGAGGATAGAA+TGG 0.530815 8_3:+16344541 Msa1279400:CDS
ATTGACTTCCCTTTCTCCAA+AGG 0.531506 8_3:+16346347 Msa1279400:three_prime_UTR
TGTTGATGCTGGAGAGAAAG+AGG 0.532391 8_3:+16344325 Msa1279400:CDS
TTCTTGAATCAACTCTTGAA+AGG 0.532471 8_3:-16343971 None:intergenic
ATGCTTCTTATGAGCTGCAA+AGG 0.533894 8_3:+16344843 Msa1279400:CDS
TGTTCTAGTGGTTAGTGGGG+TGG 0.539109 8_3:+16346110 Msa1279400:three_prime_UTR
CCATATAAAACCACTGCACA+TGG 0.540046 8_3:-16346174 None:intergenic
GTCACCAAACAGTGTACTCC+CGG 0.545120 8_3:+16343929 Msa1279400:CDS
TCATCCGGGAGTACACTGTT+TGG 0.546949 8_3:-16343933 None:intergenic
CAAGAAATCTCCTGGAGTTG+AGG 0.547234 8_3:+16343988 Msa1279400:CDS
TCCGATGGCGGAAGCAAGGG+TGG 0.547946 8_3:+16343905 None:intergenic
TGTTTAGGGGCCATGTGCAG+TGG 0.548137 8_3:+16346164 Msa1279400:three_prime_UTR
GAGAACCACTTGAAGAAGAA+GGG 0.552372 8_3:+16344401 Msa1279400:CDS
AATTAGTTTGGCCTCTTGTG+AGG 0.555483 8_3:+16345765 Msa1279400:CDS
TTGTGTTCTAGTGGTTAGTG+GGG 0.558885 8_3:+16346107 Msa1279400:three_prime_UTR
TAGAACACAAACTCAATCCC+AGG 0.560061 8_3:-16346094 None:intergenic
GGATTGAGTTTGTGTTCTAG+TGG 0.564493 8_3:+16346098 Msa1279400:three_prime_UTR
CAAGTCTATCAATTCTCTAG+AGG 0.569018 8_3:+16344532 Msa1279400:CDS
AGGTGATTCTTCATGAAATG+AGG 0.569527 8_3:-16344047 None:intergenic
TGCACAATGGATGATAATCA+AGG 0.575904 8_3:+16344445 Msa1279400:CDS
TCTCGTTACTCTAAGTCGTA+AGG 0.576711 8_3:+16344085 Msa1279400:CDS
GCTGCAGCGGGTTATAGCCG+TGG 0.578545 8_3:+16346006 Msa1279400:CDS
GAAAGCATTGAAGTGTTCAA+CGG 0.580568 8_3:-16344108 None:intergenic
AGAAGAAGAGCAGATGAACT+CGG 0.582235 8_3:+16344349 Msa1279400:CDS
GGAAGAGGAAGACGAAGACG+AGG 0.584300 8_3:+16344232 Msa1279400:CDS
GTGTTGACTGTGGCATAGCA+GGG 0.585224 8_3:+16345863 Msa1279400:CDS
TTCTATTCGGGTGTTGACTG+TGG 0.585419 8_3:+16345853 Msa1279400:CDS
ATCACCATTCACCTCACAAG+AGG 0.594909 8_3:-16345776 None:intergenic
TTTCGATCAACAGTTCATCC+GGG 0.605533 8_3:-16343947 None:intergenic
CGATGAGCAGCAGAAAGAGA+AGG 0.612760 8_3:+16344871 Msa1279400:CDS
GCAGCGGGTTATAGCCGTGG+TGG 0.619905 8_3:+16346009 Msa1279400:CDS
TGGATAATCTCAATGCACAA+TGG 0.628707 8_3:+16344432 Msa1279400:CDS
ACAAACTCAATCCCAGGGAG+TGG 0.630710 8_3:-16346088 None:intergenic
AAATTGCGTATCAAAGAAGG+AGG 0.641497 8_3:+16344131 Msa1279400:CDS
ACGACTTAGAGTAACGAGAT+CGG 0.648242 8_3:-16344081 None:intergenic
GACTAGCCACAAAGCCACCA+CGG 0.651795 8_3:-16346023 None:intergenic
ATGTGTTCGGCATCAAAAGG+AGG 0.653854 8_3:-16346326 None:intergenic
CGAGATCGGTTAACGAAACG+AGG 0.655307 8_3:-16344067 None:intergenic
AGAACACAAACTCAATCCCA+GGG 0.675458 8_3:-16346093 None:intergenic
AGAAGAGCAGATGAACTCGG+TGG 0.715453 8_3:+16344352 Msa1279400:CDS
ACAATGGATGATAATCAAGG+TGG 0.763777 8_3:+16344448 Msa1279400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAACTTAAAAAAT+AGG + chr8_3:16345428-16345447 Msa1279400:intron 10.0%
!! AATATATAATAAAACCTAAA+AGG - chr8_3:16345527-16345546 None:intergenic 10.0%
!!! TTTTAGGTTTTATTATATAT+TGG + chr8_3:16345526-16345545 Msa1279400:intron 10.0%
!!! TTTTTTTTTTTATATGTAGA+AGG + chr8_3:16345918-16345937 Msa1279400:intron 10.0%
!!! TAAGTTGGATAATTATTTGA+TGG + chr8_3:16344472-16344491 Msa1279400:CDS 20.0%
!! AACTCTTATAATACTTATTC+AGG + chr8_3:16344812-16344831 Msa1279400:intron 20.0%
!! ACTCTTATAATACTTATTCA+GGG + chr8_3:16344813-16344832 Msa1279400:intron 20.0%
!! TTTATAAGATGAGTCAATTT+AGG - chr8_3:16344916-16344935 None:intergenic 20.0%
!! AATTGAAATTATGAAACATG+AGG - chr8_3:16345327-16345346 None:intergenic 20.0%
!! TCATGTTTCATAATTTCAAT+TGG + chr8_3:16345326-16345345 Msa1279400:intron 20.0%
!! CTGTTAGATAATAAGTTATT+AGG + chr8_3:16345460-16345479 Msa1279400:intron 20.0%
!! AAGGAACTTTATAAAACTTA+AGG - chr8_3:16346202-16346221 None:intergenic 20.0%
! AGGATAGAATGGTATTAAAA+GGG + chr8_3:16344552-16344571 Msa1279400:CDS 25.0%
!! CTTTGAAAATGAAATTAGCA+AGG - chr8_3:16344680-16344699 None:intergenic 25.0%
! CTCTTATAATACTTATTCAG+GGG + chr8_3:16344814-16344833 Msa1279400:intron 25.0%
! TCATCTTATAAACATGTAGT+AGG + chr8_3:16344924-16344943 Msa1279400:intron 25.0%
!! TACTTTAAACTTTGAAGATG+AGG - chr8_3:16345003-16345022 None:intergenic 25.0%
!!! TTCATTGATTTTTCCTCATT+TGG - chr8_3:16345301-16345320 None:intergenic 25.0%
!! AGAAGATTTCAACTCTAAAA+TGG - chr8_3:16345358-16345377 None:intergenic 25.0%
! TAGCATAACTCATTAAACTA+AGG - chr8_3:16345560-16345579 None:intergenic 25.0%
! TTCCGATTTAATCATGTTTA+TGG + chr8_3:16345715-16345734 Msa1279400:intron 25.0%
! AGCCATAAACATGATTAAAT+CGG - chr8_3:16345720-16345739 None:intergenic 25.0%
!!! GTTTTTTGAATTCTGTTACA+TGG + chr8_3:16345944-16345963 Msa1279400:CDS 25.0%
!!! ATTGGCTTTTGTTTTTGTTT+AGG + chr8_3:16346149-16346168 Msa1279400:three_prime_UTR 25.0%
!!! TTGGCTTTTGTTTTTGTTTA+GGG + chr8_3:16346150-16346169 Msa1279400:three_prime_UTR 25.0%
! TGAAATTAAGCGAAAACATA+AGG - chr8_3:16346221-16346240 None:intergenic 25.0%
! CAATAAGTTAAAAGAAAGAC+AGG + chr8_3:16346239-16346258 Msa1279400:three_prime_UTR 25.0%
TTCTTGAATCAACTCTTGAA+AGG - chr8_3:16343974-16343993 None:intergenic 30.0%
TTCAAATTGCGTATCAAAGA+AGG + chr8_3:16344128-16344147 Msa1279400:CDS 30.0%
GAGGATAGAATGGTATTAAA+AGG + chr8_3:16344551-16344570 Msa1279400:CDS 30.0%
CAAGAATGAAATGCAAACTA+TGG + chr8_3:16344589-16344608 Msa1279400:intron 30.0%
AAATGAAATTAGCAAGGCAA+AGG - chr8_3:16344674-16344693 None:intergenic 30.0%
ACATGAAATTAGTAAAGCAG+AGG - chr8_3:16344756-16344775 None:intergenic 30.0%
CTAATTTCATGTCCTGTATT+CGG + chr8_3:16344764-16344783 Msa1279400:intron 30.0%
TAATTTCATGTCCTGTATTC+GGG + chr8_3:16344765-16344784 Msa1279400:intron 30.0%
TTGATTCCACAGAAGAAATT+GGG - chr8_3:16345078-16345097 None:intergenic 30.0%
! ATTGATTCCACAGAAGAAAT+TGG - chr8_3:16345079-16345098 None:intergenic 30.0%
AATTTCTTCTGTGGAATCAA+TGG + chr8_3:16345078-16345097 Msa1279400:intron 30.0%
! TAAGACAAAGTTCACTCTTT+TGG - chr8_3:16345242-16345261 None:intergenic 30.0%
! TTTTTCCTCATTTGGTTAGT+GGG - chr8_3:16345293-16345312 None:intergenic 30.0%
! ATTTTTCCTCATTTGGTTAG+TGG - chr8_3:16345294-16345313 None:intergenic 30.0%
AGAGAACAAAACAAAAACGA+CGG - chr8_3:16345605-16345624 None:intergenic 30.0%
TTCTCTTAACCTAAAAGAAG+AGG - chr8_3:16345744-16345763 None:intergenic 30.0%
GGTTAAGAGAAGAATTAGTT+TGG + chr8_3:16345753-16345772 Msa1279400:intron 30.0%
! CTAGTCTTTATTTCCATTAG+TGG + chr8_3:16346040-16346059 Msa1279400:CDS 30.0%
AACAACAAAAACTCCACTAA+TGG - chr8_3:16346056-16346075 None:intergenic 30.0%
!!! GGTTTTTTACTTTCGTGTAT+TGG + chr8_3:16346131-16346150 Msa1279400:three_prime_UTR 30.0%
!!! TGGCTTTTGTTTTTGTTTAG+GGG + chr8_3:16346151-16346170 Msa1279400:three_prime_UTR 30.0%
ATTTCGATCAACAGTTCATC+CGG - chr8_3:16343951-16343970 None:intergenic 35.0%
! AGTTGATTCAAGAAATCTCC+TGG + chr8_3:16343980-16343999 Msa1279400:CDS 35.0%
AGGTGATTCTTCATGAAATG+AGG - chr8_3:16344050-16344069 None:intergenic 35.0%
!! GAAAGCATTGAAGTGTTCAA+CGG - chr8_3:16344111-16344130 None:intergenic 35.0%
AAATTGCGTATCAAAGAAGG+AGG + chr8_3:16344131-16344150 Msa1279400:CDS 35.0%
GAAGAAGAAGAAGAAGAAGA+TGG + chr8_3:16344281-16344300 Msa1279400:CDS 35.0%
TGGATAATCTCAATGCACAA+TGG + chr8_3:16344432-16344451 Msa1279400:CDS 35.0%
TGCACAATGGATGATAATCA+AGG + chr8_3:16344445-16344464 Msa1279400:CDS 35.0%
ACAATGGATGATAATCAAGG+TGG + chr8_3:16344448-16344467 Msa1279400:CDS 35.0%
CAAGTCTATCAATTCTCTAG+AGG + chr8_3:16344532-16344551 Msa1279400:CDS 35.0%
! CAATTCTCTAGAGGATAGAA+TGG + chr8_3:16344541-16344560 Msa1279400:CDS 35.0%
GAATGAAATGCAAACTATGG+AGG + chr8_3:16344592-16344611 Msa1279400:intron 35.0%
AATTTCATGTCCTGTATTCG+GGG + chr8_3:16344766-16344785 Msa1279400:intron 35.0%
GAAAGAGAAGGTAGAATTGA+TGG + chr8_3:16344883-16344902 Msa1279400:intron 35.0%
TTCTATAACAGCACTGTATC+TGG + chr8_3:16344968-16344987 Msa1279400:intron 35.0%
TGATTCCACAGAAGAAATTG+GGG - chr8_3:16345077-16345096 None:intergenic 35.0%
TCCTATTGCATGATGAAGTT+TGG + chr8_3:16345196-16345215 Msa1279400:intron 35.0%
ACCAAACTTCATCATGCAAT+AGG - chr8_3:16345200-16345219 None:intergenic 35.0%
AGTTATTAGGCTCATGTTGT+TGG + chr8_3:16345473-16345492 Msa1279400:intron 35.0%
GTTATTAGGCTCATGTTGTT+GGG + chr8_3:16345474-16345493 Msa1279400:intron 35.0%
! GAAGTTAGTAGACTCCTTTT+AGG + chr8_3:16345510-16345529 Msa1279400:intron 35.0%
ACAATACATAGAGCTAGAGA+CGG - chr8_3:16345635-16345654 None:intergenic 35.0%
! TTATGGCTTCCTCTTCTTTT+AGG + chr8_3:16345732-16345751 Msa1279400:intron 35.0%
!! TTGAGGCTTGTTCTTTTACT+TGG + chr8_3:16345799-16345818 Msa1279400:CDS 35.0%
!! ATTGTCTTTGGGGTTCTATT+CGG + chr8_3:16345840-16345859 Msa1279400:CDS 35.0%
TTTGTGTTCTAGTGGTTAGT+GGG + chr8_3:16346106-16346125 Msa1279400:three_prime_UTR 35.0%
! ACATTTCACCTTTGGAGAAA+GGG - chr8_3:16346358-16346377 None:intergenic 35.0%
TTTCGATCAACAGTTCATCC+GGG - chr8_3:16343950-16343969 None:intergenic 40.0%
ACGACTTAGAGTAACGAGAT+CGG - chr8_3:16344084-16344103 None:intergenic 40.0%
TCTCGTTACTCTAAGTCGTA+AGG + chr8_3:16344085-16344104 Msa1279400:CDS 40.0%
AGGAGAAGAAGAAGAAGAAG+AGG + chr8_3:16344151-16344170 Msa1279400:CDS 40.0%
AGAAGAAGAAGAAGAGGAAG+TGG + chr8_3:16344157-16344176 Msa1279400:CDS 40.0%
!! GATAGTGTTGATGTTGATGC+TGG + chr8_3:16344314-16344333 Msa1279400:CDS 40.0%
AGAAGAAGAGCAGATGAACT+CGG + chr8_3:16344349-16344368 Msa1279400:CDS 40.0%
AGAGAACCACTTGAAGAAGA+AGG + chr8_3:16344400-16344419 Msa1279400:CDS 40.0%
GAGAACCACTTGAAGAAGAA+GGG + chr8_3:16344401-16344420 Msa1279400:CDS 40.0%
TTTCTCCCTTCTTCTTCAAG+TGG - chr8_3:16344409-16344428 None:intergenic 40.0%
GAAGAAGAAGGGAGAAAATC+TGG + chr8_3:16344412-16344431 Msa1279400:CDS 40.0%
GATAATCAAGGTGGCTAAGT+TGG + chr8_3:16344457-16344476 Msa1279400:CDS 40.0%
CAAACTAATACCCCGAATAC+AGG - chr8_3:16344779-16344798 None:intergenic 40.0%
ATGCTTCTTATGAGCTGCAA+AGG + chr8_3:16344843-16344862 Msa1279400:CDS 40.0%
ACAAAACAAAAACGACGGTC+AGG - chr8_3:16345600-16345619 None:intergenic 40.0%
! AATTAGTTTGGCCTCTTGTG+AGG + chr8_3:16345765-16345784 Msa1279400:CDS 40.0%
!! AGGCTTGTTCTTTTACTTGG+AGG + chr8_3:16345802-16345821 Msa1279400:CDS 40.0%
!! GGCTTGTTCTTTTACTTGGA+GGG + chr8_3:16345803-16345822 Msa1279400:CDS 40.0%
! GCTTGTTCTTTTACTTGGAG+GGG + chr8_3:16345804-16345823 Msa1279400:CDS 40.0%
!! TTGTCTTTGGGGTTCTATTC+GGG + chr8_3:16345841-16345860 Msa1279400:CDS 40.0%
!! GGTCTTCTGATTCACTTTTC+TGG + chr8_3:16345965-16345984 Msa1279400:CDS 40.0%
!!! ACTTTTCTGGTCTTGTTGCT+GGG + chr8_3:16345978-16345997 Msa1279400:CDS 40.0%
AGAACACAAACTCAATCCCA+GGG - chr8_3:16346096-16346115 None:intergenic 40.0%
TAGAACACAAACTCAATCCC+AGG - chr8_3:16346097-16346116 None:intergenic 40.0%
GGATTGAGTTTGTGTTCTAG+TGG + chr8_3:16346098-16346117 Msa1279400:three_prime_UTR 40.0%
GTTTGTGTTCTAGTGGTTAG+TGG + chr8_3:16346105-16346124 Msa1279400:three_prime_UTR 40.0%
TTGTGTTCTAGTGGTTAGTG+GGG + chr8_3:16346107-16346126 Msa1279400:three_prime_UTR 40.0%
CCATATAAAACCACTGCACA+TGG - chr8_3:16346177-16346196 None:intergenic 40.0%
!!! CCATGTGCAGTGGTTTTATA+TGG + chr8_3:16346174-16346193 Msa1279400:three_prime_UTR 40.0%
TCAATGTGTTCGGCATCAAA+AGG - chr8_3:16346332-16346351 None:intergenic 40.0%
GAAAGGGAAGTCAATGTGTT+CGG - chr8_3:16346342-16346361 None:intergenic 40.0%
! ATTGACTTCCCTTTCTCCAA+AGG + chr8_3:16346347-16346366 Msa1279400:three_prime_UTR 40.0%
! GACATTTCACCTTTGGAGAA+AGG - chr8_3:16346359-16346378 None:intergenic 40.0%
CAAGAAATCTCCTGGAGTTG+AGG + chr8_3:16343988-16344007 Msa1279400:CDS 45.0%
AGAAGAAGAGGAAGTGGAAG+AGG + chr8_3:16344163-16344182 Msa1279400:CDS 45.0%
AGAGGAAGAAGACGAAGAAG+AGG + chr8_3:16344211-16344230 Msa1279400:CDS 45.0%
AGAAGACGAAGAAGAGGAAG+AGG + chr8_3:16344217-16344236 Msa1279400:CDS 45.0%
TGTTGATGCTGGAGAGAAAG+AGG + chr8_3:16344325-16344344 Msa1279400:CDS 45.0%
TTCTGCCCCAATTTCTTCTG+TGG + chr8_3:16345069-16345088 Msa1279400:intron 45.0%
CTCATTTGGTTAGTGGGAGA+AGG - chr8_3:16345287-16345306 None:intergenic 45.0%
CTTCTCCCACTAACCAAATG+AGG + chr8_3:16345285-16345304 Msa1279400:intron 45.0%
ATCACCATTCACCTCACAAG+AGG - chr8_3:16345779-16345798 None:intergenic 45.0%
GTGAGGTGAATGGTGATTTG+AGG + chr8_3:16345782-16345801 Msa1279400:CDS 45.0%
! GTTCTTTTACTTGGAGGGGT+TGG + chr8_3:16345808-16345827 Msa1279400:CDS 45.0%
AGAACCCCAAAGACAATAGC+AGG - chr8_3:16345837-16345856 None:intergenic 45.0%
!! TTCTATTCGGGTGTTGACTG+TGG + chr8_3:16345853-16345872 Msa1279400:CDS 45.0%
!!! CACTTTTCTGGTCTTGTTGC+TGG + chr8_3:16345977-16345996 Msa1279400:CDS 45.0%
! ACTTGAATTTTGCCACTCCC+TGG + chr8_3:16346076-16346095 Msa1279400:three_prime_UTR 45.0%
! CTTGAATTTTGCCACTCCCT+GGG + chr8_3:16346077-16346096 Msa1279400:three_prime_UTR 45.0%
ATGTGTTCGGCATCAAAAGG+AGG - chr8_3:16346329-16346348 None:intergenic 45.0%
GTCACCAAACAGTGTACTCC+CGG + chr8_3:16343929-16343948 Msa1279400:CDS 50.0%
! TCATCCGGGAGTACACTGTT+TGG - chr8_3:16343936-16343955 None:intergenic 50.0%
TGAGGTGCGTTTGCAAGTTG+TGG + chr8_3:16344006-16344025 Msa1279400:CDS 50.0%
CGAGATCGGTTAACGAAACG+AGG - chr8_3:16344070-16344089 None:intergenic 50.0%
AGAGGAAGTGGAAGAGGAAG+AGG + chr8_3:16344169-16344188 Msa1279400:CDS 50.0%
AGTGGAAGAGGAAGAGGAAG+AGG + chr8_3:16344175-16344194 Msa1279400:CDS 50.0%
AGAGGAAGAGGAAGAGGAAG+AGG + chr8_3:16344181-16344200 Msa1279400:CDS 50.0%
AGAGGAAGAGGAAGAGGAAG+AGG + chr8_3:16344181-16344200 Msa1279400:CDS 50.0%
AGAGGAAGAGGAAGAGGAAG+AGG + chr8_3:16344181-16344200 Msa1279400:CDS 50.0%
GAGGAAGAGGAAGAGGAAGA+CGG + chr8_3:16344182-16344201 Msa1279400:CDS 50.0%
AGAAGAGCAGATGAACTCGG+TGG + chr8_3:16344352-16344371 Msa1279400:CDS 50.0%
CGATGAGCAGCAGAAAGAGA+AGG + chr8_3:16344871-16344890 Msa1279400:CDS 50.0%
TTGGCCTCTTGTGAGGTGAA+TGG + chr8_3:16345772-16345791 Msa1279400:CDS 50.0%
! CTTTTACTTGGAGGGGTTGG+TGG + chr8_3:16345811-16345830 Msa1279400:CDS 50.0%
TGGTGGCCTGCTATTGTCTT+TGG + chr8_3:16345828-16345847 Msa1279400:CDS 50.0%
GGTGGCCTGCTATTGTCTTT+GGG + chr8_3:16345829-16345848 Msa1279400:CDS 50.0%
GTGGCCTGCTATTGTCTTTG+GGG + chr8_3:16345830-16345849 Msa1279400:CDS 50.0%
!! GTGTTGACTGTGGCATAGCA+GGG + chr8_3:16345863-16345882 Msa1279400:CDS 50.0%
TGTGGCATAGCAGGGTTCTT+TGG + chr8_3:16345871-16345890 Msa1279400:CDS 50.0%
! TTATAGCCGTGGTGGCTTTG+TGG + chr8_3:16346017-16346036 Msa1279400:CDS 50.0%
ACAAACTCAATCCCAGGGAG+TGG - chr8_3:16346091-16346110 None:intergenic 50.0%
TGTTCTAGTGGTTAGTGGGG+TGG + chr8_3:16346110-16346129 Msa1279400:three_prime_UTR 50.0%
TGCAAACGCACCTCAACTCC+AGG - chr8_3:16344001-16344020 None:intergenic 55.0%
GGAAGAGGAAGACGAAGACG+AGG + chr8_3:16344232-16344251 Msa1279400:CDS 55.0%
GGAAGACGAAGACGAGGAAG+AGG + chr8_3:16344238-16344257 Msa1279400:CDS 55.0%
CGAAGACGAGGAAGAGGAAG+AGG + chr8_3:16344244-16344263 Msa1279400:CDS 55.0%
CGAGGAAGAGGAAGAGGAAG+AGG + chr8_3:16344250-16344269 Msa1279400:CDS 55.0%
!! GGTGTTGACTGTGGCATAGC+AGG + chr8_3:16345862-16345881 Msa1279400:CDS 55.0%
! GACTAGCCACAAAGCCACCA+CGG - chr8_3:16346026-16346045 None:intergenic 55.0%
TGTTTAGGGGCCATGTGCAG+TGG + chr8_3:16346164-16346183 Msa1279400:three_prime_UTR 55.0%
!! CTGGTCTTGTTGCTGGGAGC+TGG + chr8_3:16345984-16346003 Msa1279400:CDS 60.0%
TTGCTGGGAGCTGGCTGCAG+CGG + chr8_3:16345993-16346012 Msa1279400:CDS 65.0%
!! GCTGCAGCGGGTTATAGCCG+TGG + chr8_3:16346006-16346025 Msa1279400:CDS 65.0%
!! GCAGCGGGTTATAGCCGTGG+TGG + chr8_3:16346009-16346028 Msa1279400:CDS 65.0%
TGCTGGGAGCTGGCTGCAGC+GGG + chr8_3:16345994-16346013 Msa1279400:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 16343909 16346379 16343909 ID=Msa1279400;Name=Msa1279400
chr8_3 mRNA 16343909 16346379 16343909 ID=Msa1279400-mRNA-1;Parent=Msa1279400;Name=Msa1279400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.33|0.5|1|1|1|4|320|333
chr8_3 exon 16343909 16344584 16343909 ID=Msa1279400-mRNA-1:exon:6394;Parent=Msa1279400-mRNA-1
chr8_3 exon 16344834 16344892 16344834 ID=Msa1279400-mRNA-1:exon:6395;Parent=Msa1279400-mRNA-1
chr8_3 exon 16345754 16345897 16345754 ID=Msa1279400-mRNA-1:exon:6396;Parent=Msa1279400-mRNA-1
chr8_3 exon 16345937 16346379 16345937 ID=Msa1279400-mRNA-1:exon:6397;Parent=Msa1279400-mRNA-1
chr8_3 CDS 16343909 16344584 16343909 ID=Msa1279400-mRNA-1:cds;Parent=Msa1279400-mRNA-1
chr8_3 CDS 16344834 16344892 16344834 ID=Msa1279400-mRNA-1:cds;Parent=Msa1279400-mRNA-1
chr8_3 CDS 16345754 16345897 16345754 ID=Msa1279400-mRNA-1:cds;Parent=Msa1279400-mRNA-1
chr8_3 CDS 16345937 16346059 16345937 ID=Msa1279400-mRNA-1:cds;Parent=Msa1279400-mRNA-1
chr8_3 three_prime_UTR 16346060 16346379 16346060 ID=Msa1279400-mRNA-1:three_prime_utr;Parent=Msa1279400-mRNA-1
Gene Sequence

>Msa1279400

ATGGCGGAAGCAAGGGTGGTGTCACCAAACAGTGTACTCCCGGATGAACTGTTGATCGAAATCCTTTCAAGAGTTGATTCAAGAAATCTCCTGGAGTTGAGGTGCGTTTGCAAGTTGTGGAAATCGTTAGTTCTTGATCCTCATTTCATGAAGAATCACCTCGTTTCGTTAACCGATCTCGTTACTCTAAGTCGTAAGGCCGTTGAACACTTCAATGCTTTCAAATTGCGTATCAAAGAAGGAGGAGAAGAAGAAGAAGAAGAGGAAGTGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGACGAAGAAGAGGAAGAGGAAGACGAAGACGAGGAAGAGGAAGAGGAAGAGGAAGACGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTGATAGTGTTGATGTTGATGCTGGAGAGAAAGAGGAAGAAGAAGAGCAGATGAACTCGGTGGATGCGCTAATTAAATTTATGTTAATAGAGAACCACTTGAAGAAGAAGGGAGAAAATCTGGATAATCTCAATGCACAATGGATGATAATCAAGGTGGCTAAGTTGGATAATTATTTGATGGTTGTTAAATATATCAAAAGCTTTATTCTGAATTTTCTCAAGTCTATCAATTCTCTAGAGGATAGAATGGTATTAAAAGGGAACTTAGAAAGGGTTTTCAATGCTTCTTATGAGCTGCAAAGGATTCACGATGAGCAGCAGAAAGAGAAGGTTAAGAGAAGAATTAGTTTGGCCTCTTGTGAGGTGAATGGTGATTTGAGGCTTGTTCTTTTACTTGGAGGGGTTGGTGGCCTGCTATTGTCTTTGGGGTTCTATTCGGGTGTTGACTGTGGCATAGCAGGGTTCTTTGGCAATAAGGACTGTTTTTTGAATTCTGTTACATGGTCTTCTGATTCACTTTTCTGGTCTTGTTGCTGGGAGCTGGCTGCAGCGGGTTATAGCCGTGGTGGCTTTGTGGCTAGTCTTTATTTCCATTAG

Protein sequence

>Msa1279400

MAEARVVSPNSVLPDELLIEILSRVDSRNLLELRCVCKLWKSLVLDPHFMKNHLVSLTDLVTLSRKAVEHFNAFKLRIKEGGEEEEEEEVEEEEEEEEEEEEEEDEEEEEEDEDEEEEEEEEDGEEEEEEEEEDGDSVDVDAGEKEEEEEQMNSVDALIKFMLIENHLKKKGENLDNLNAQWMIIKVAKLDNYLMVVKYIKSFILNFLKSINSLEDRMVLKGNLERVFNASYELQRIHDEQQKEKVKRRISLASCEVNGDLRLVLLLGGVGGLLLSLGFYSGVDCGIAGFFGNKDCFLNSVTWSSDSLFWSCCWELAAAGYSRGGFVASLYFH*