AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121440 MtrunA17_Chr7g0249761 99.026 308 3 0 1 308 676 983 0.0 604
Msa1121440 MtrunA17_Chr8g0389051 44.660 309 168 3 1 308 678 984 6.27e-83 269
Msa1121440 MtrunA17_Chr5g0429261 37.419 310 191 3 1 308 186 494 8.30e-68 219
Msa1121440 MtrunA17_Chr3g0103751 32.281 285 187 4 27 308 1050 1331 2.14e-35 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121440 AT1G59760.1 79.545 308 61 2 1 308 683 988 1.71e-165 486
Msa1121440 AT2G06990.1 45.631 309 165 3 1 308 689 995 2.57e-83 271
Msa1121440 AT3G46960.2 33.692 279 163 5 41 308 940 1207 1.76e-38 145
Msa1121440 AT3G46960.3 33.692 279 163 5 41 308 949 1216 2.01e-38 145
Msa1121440 AT3G46960.1 33.692 279 163 5 41 308 1077 1344 2.87e-38 144

Find 63 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGATGTCCCTCTTGATTT+TGG 0.134543 7_3:-71510732 None:intergenic
GTCATTTAGGCCTGATATTA+TGG 0.201439 7_3:+71510529 Msa1121440:CDS
CTGCAATTCCATAGATTTCA+TGG 0.253040 7_3:+71510794 Msa1121440:three_prime_UTR
CCTTCCAACCATGAAATCTA+TGG 0.291525 7_3:-71510802 None:intergenic
TGATAGGATCGTCGAATATC+TGG 0.321277 7_3:+71511062 Msa1121440:three_prime_UTR
ATCTACTACTTTAGCATTCA+AGG 0.353316 7_3:+71509243 Msa1121440:CDS
CACACCTTCATGTCTTCTTC+AGG 0.358573 7_3:-71508973 None:intergenic
TAGAAGGAACTACAAATATA+AGG 0.358581 7_3:-71510765 None:intergenic
ATTGAACATTAGTTCTGTTA+AGG 0.382269 7_3:-71509864 None:intergenic
AGTCCTTAGTACAGAGCTTT+CGG 0.390322 7_3:-71511011 None:intergenic
ATCAAGTTCTTCTCGAGGTT+TGG 0.390532 7_3:-71509969 None:intergenic
CCTTGCATTCAAGCTGAAGC+TGG 0.400039 7_3:-71510033 None:intergenic
AACATACAAAATCAGTGTAT+TGG 0.414076 7_3:+71510884 Msa1121440:three_prime_UTR
AATGTTCAATGGTGTCTTCA+AGG 0.420240 7_3:+71509877 Msa1121440:CDS
ATAGAAGCAGCTAAGTCAAT+TGG 0.420476 7_3:+71510671 Msa1121440:CDS
ATAAATCACTTCTATATGAT+AGG 0.430720 7_3:+71511046 Msa1121440:three_prime_UTR
TAAGCTAAGTTCAAAACAAA+AGG 0.437504 7_3:-71510859 None:intergenic
CTCGCCAGACAAAACAAGAT+AGG 0.441660 7_3:-71509928 None:intergenic
TCCAACGGCAAAAGATCCTT+TGG 0.442143 7_3:-71508874 None:intergenic
TACACAACCTCCATAATATC+AGG 0.445091 7_3:-71510539 None:intergenic
GGAATTGCAGAGTTTCTAGA+AGG 0.449504 7_3:-71510781 None:intergenic
ATCCCGTAGAATAGAGGCTT+TGG 0.452604 7_3:+71509099 Msa1121440:CDS
TGGTGTCTTCAAGGACATAA+AGG 0.457457 7_3:+71509886 Msa1121440:CDS
AAGAGGGTTCTTCGGAGGCT+AGG 0.479883 7_3:+71509283 Msa1121440:CDS
GATAATGTGGTCGACTTGAA+AGG 0.482851 7_3:+71509803 Msa1121440:CDS
CTTTCTAGATTTAGTGAGAA+GGG 0.482853 7_3:+71508934 Msa1121440:CDS
AAGCAAGAAAGAGGGTTCTT+CGG 0.485970 7_3:+71509275 Msa1121440:CDS
TCTCCAAAGCCTCTATTCTA+CGG 0.494153 7_3:-71509102 None:intergenic
TTCAAAGTTCTATGAGATCA+TGG 0.494449 7_3:+71510577 Msa1121440:CDS
AAAAGCATCCCGTAGAATAG+AGG 0.497857 7_3:+71509093 Msa1121440:CDS
TTTGTTAGACGTACATTACA+TGG 0.499470 7_3:+71510945 Msa1121440:three_prime_UTR
ATGAGCTCAAAGCAAGAAAG+AGG 0.501244 7_3:+71509266 Msa1121440:CDS
AGAGGGTTCTTCGGAGGCTA+GGG 0.503872 7_3:+71509284 Msa1121440:CDS
TTATGGAGGTTGTGTATGCT+TGG 0.504319 7_3:+71510546 Msa1121440:CDS
CTCCAAAGCCTCTATTCTAC+GGG 0.506679 7_3:-71509101 None:intergenic
GTTGTGTATGCTTGGGCGAA+AGG 0.507277 7_3:+71510554 Msa1121440:CDS
CCATAGATTTCATGGTTGGA+AGG 0.508389 7_3:+71510802 Msa1121440:three_prime_UTR
TAGCCGAAAGCTCTGTACTA+AGG 0.511429 7_3:+71511008 Msa1121440:three_prime_UTR
TTAACAGAACTAATGTTCAA+TGG 0.517657 7_3:+71509866 Msa1121440:CDS
CCAGCTTCAGCTTGAATGCA+AGG 0.523581 7_3:+71510033 Msa1121440:CDS
CTTGCATTCAAGCTGAAGCT+GGG 0.533738 7_3:-71510032 None:intergenic
CACAATTACAAGATACTGCT+CGG 0.542637 7_3:+71510002 Msa1121440:CDS
ATAATGTGGTCGACTTGAAA+GGG 0.547676 7_3:+71509804 Msa1121440:CDS
TAGATCAATTAGAAGACTTG+AGG 0.550410 7_3:+71510631 Msa1121440:CDS
AATTCCATAGATTTCATGGT+TGG 0.558909 7_3:+71510798 Msa1121440:three_prime_UTR
TATGGAGGTTGTGTATGCTT+GGG 0.562105 7_3:+71510547 Msa1121440:CDS
AATTGGAGAAATTGAGCTTG+AGG 0.570010 7_3:+71510688 Msa1121440:CDS
TCTTTCTAGATTTAGTGAGA+AGG 0.571697 7_3:+71508933 Msa1121440:CDS
AGCAGATCAAGTTCTTCTCG+AGG 0.592349 7_3:-71509974 None:intergenic
ATCGTCGAATATCTGGATGT+TGG 0.598444 7_3:+71511069 Msa1121440:three_prime_UTR
AGATCCTGAAGAAGACATGA+AGG 0.609387 7_3:+71508969 Msa1121440:CDS
GCTTGAGGCAAAGTTTGAAG+AGG 0.612703 7_3:+71510703 Msa1121440:CDS
TCTTCTTCAGGATCTAGAAG+TGG 0.620210 7_3:-71508961 None:intergenic
ATTTAGGCCTGATATTATGG+AGG 0.621480 7_3:+71510532 Msa1121440:CDS
AGGCAGTGTCCAAAATCAAG+AGG 0.624431 7_3:+71510723 Msa1121440:CDS
ATATGCTACAAGTGATAATG+TGG 0.633052 7_3:+71509790 Msa1121440:CDS
TGAGCTCAAAGCAAGAAAGA+GGG 0.634421 7_3:+71509267 Msa1121440:CDS
GGCAGTGTCCAAAATCAAGA+GGG 0.648163 7_3:+71510724 Msa1121440:CDS
CAAGAAAGAGGGTTCTTCGG+AGG 0.650223 7_3:+71509278 Msa1121440:CDS
TGTGGTCGACTTGAAAGGGA+AGG 0.659396 7_3:+71509808 Msa1121440:CDS
CCTGCGTCTATACATACCAA+AGG 0.668515 7_3:+71508858 Msa1121440:CDS
TGTCTTCAAGGACATAAAGG+TGG 0.672228 7_3:+71509889 Msa1121440:CDS
CCTTTGGTATGTATAGACGC+AGG 0.683839 7_3:-71508858 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTATAATTTTATTTTAA+TGG + chr7_3:71509710-71509729 Msa1121440:intron 10.0%
!!! GTTGTATAATTTTATTTTAA+TGG + chr7_3:71509710-71509729 Msa1121440:intron 10.0%
!! TAGATAATGATAGTATAATT+GGG - chr7_3:71509035-71509054 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr7_3:71509521-71509540 None:intergenic 15.0%
!! AAAATTATACAACCATAATT+TGG - chr7_3:71509703-71509722 None:intergenic 15.0%
!!! ACTTTATTTTCAGTTTTATT+TGG + chr7_3:71510110-71510129 Msa1121440:intron 15.0%
!! TAGATAATGATAGTATAATT+GGG - chr7_3:71509035-71509054 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr7_3:71509521-71509540 None:intergenic 15.0%
!! AAAATTATACAACCATAATT+TGG - chr7_3:71509703-71509722 None:intergenic 15.0%
!!! ACTTTATTTTCAGTTTTATT+TGG + chr7_3:71510110-71510129 Msa1121440:intron 15.0%
!! ATAAAAATGAGGAAAATGAA+TGG - chr7_3:71509007-71509026 None:intergenic 20.0%
!! ATTGGGAAATAATAAAAATG+AGG - chr7_3:71509018-71509037 None:intergenic 20.0%
!! CTAGATAATGATAGTATAAT+TGG - chr7_3:71509036-71509055 None:intergenic 20.0%
!!! TTTAACTTTTGCTTTATAAG+CGG - chr7_3:71509160-71509179 None:intergenic 20.0%
!!! AAAAGTTAAAAGTTTTTCAG+AGG + chr7_3:71509170-71509189 Msa1121440:CDS 20.0%
!!! TGATCTTAATGTTTTCTTAA+TGG - chr7_3:71509224-71509243 None:intergenic 20.0%
!! AACAAAAAATGAAAGGATTA+AGG - chr7_3:71509342-71509361 None:intergenic 20.0%
!! ATAGGAAATTAAATCCATTT+GGG - chr7_3:71509461-71509480 None:intergenic 20.0%
!! TTTGAGAAAATGACATATTT+CGG + chr7_3:71509528-71509547 Msa1121440:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_3:71509620-71509639 None:intergenic 20.0%
!! GATGAATAATATATTTGCTT+TGG - chr7_3:71510245-71510264 None:intergenic 20.0%
!! ATAAATCACTTCTATATGAT+AGG + chr7_3:71511046-71511065 Msa1121440:three_prime_UTR 20.0%
!! ATAAAAATGAGGAAAATGAA+TGG - chr7_3:71509007-71509026 None:intergenic 20.0%
!! ATTGGGAAATAATAAAAATG+AGG - chr7_3:71509018-71509037 None:intergenic 20.0%
!! CTAGATAATGATAGTATAAT+TGG - chr7_3:71509036-71509055 None:intergenic 20.0%
!!! TTTAACTTTTGCTTTATAAG+CGG - chr7_3:71509160-71509179 None:intergenic 20.0%
!!! AAAAGTTAAAAGTTTTTCAG+AGG + chr7_3:71509170-71509189 Msa1121440:CDS 20.0%
!!! TGATCTTAATGTTTTCTTAA+TGG - chr7_3:71509224-71509243 None:intergenic 20.0%
!! AACAAAAAATGAAAGGATTA+AGG - chr7_3:71509342-71509361 None:intergenic 20.0%
!! ATAGGAAATTAAATCCATTT+GGG - chr7_3:71509461-71509480 None:intergenic 20.0%
!! TTTGAGAAAATGACATATTT+CGG + chr7_3:71509528-71509547 Msa1121440:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_3:71509620-71509639 None:intergenic 20.0%
!! GATGAATAATATATTTGCTT+TGG - chr7_3:71510245-71510264 None:intergenic 20.0%
!! ATAAATCACTTCTATATGAT+AGG + chr7_3:71511046-71511065 Msa1121440:three_prime_UTR 20.0%
! AAACACACTGAAAAAAGTTA+TGG + chr7_3:71508906-71508925 Msa1121440:CDS 25.0%
! GATAGGAAATTAAATCCATT+TGG - chr7_3:71509462-71509481 None:intergenic 25.0%
! ATACAACCATAATTTGGATT+TGG - chr7_3:71509697-71509716 None:intergenic 25.0%
!!! ATTGAACATTAGTTCTGTTA+AGG - chr7_3:71509867-71509886 None:intergenic 25.0%
! TTAACAGAACTAATGTTCAA+TGG + chr7_3:71509866-71509885 Msa1121440:CDS 25.0%
!! AAGCAATAAAGTCTTGTAAT+TGG - chr7_3:71510220-71510239 None:intergenic 25.0%
!! TTGATGATATTACATTCAAC+AGG - chr7_3:71510270-71510289 None:intergenic 25.0%
! TATTGTGAAATGAAAAGCTA+AGG - chr7_3:71510310-71510329 None:intergenic 25.0%
! ATATTTATCCTTATCTTCGA+TGG + chr7_3:71510338-71510357 Msa1121440:intron 25.0%
! AATCTACAATATTCAATGCA+TGG - chr7_3:71510380-71510399 None:intergenic 25.0%
! TGCATTGAATATTGTAGATT+TGG + chr7_3:71510380-71510399 Msa1121440:intron 25.0%
!! AAACTTTTGTGAAGTCATTT+AGG + chr7_3:71510516-71510535 Msa1121440:CDS 25.0%
! TAGAAGGAACTACAAATATA+AGG - chr7_3:71510768-71510787 None:intergenic 25.0%
! AAAACAAAAGGTGAAAAACA+AGG - chr7_3:71510850-71510869 None:intergenic 25.0%
! TAAGCTAAGTTCAAAACAAA+AGG - chr7_3:71510862-71510881 None:intergenic 25.0%
! AACATACAAAATCAGTGTAT+TGG + chr7_3:71510884-71510903 Msa1121440:three_prime_UTR 25.0%
! AAACACACTGAAAAAAGTTA+TGG + chr7_3:71508906-71508925 Msa1121440:CDS 25.0%
! GATAGGAAATTAAATCCATT+TGG - chr7_3:71509462-71509481 None:intergenic 25.0%
! ATACAACCATAATTTGGATT+TGG - chr7_3:71509697-71509716 None:intergenic 25.0%
!!! ATTGAACATTAGTTCTGTTA+AGG - chr7_3:71509867-71509886 None:intergenic 25.0%
! TTAACAGAACTAATGTTCAA+TGG + chr7_3:71509866-71509885 Msa1121440:CDS 25.0%
!! AAGCAATAAAGTCTTGTAAT+TGG - chr7_3:71510220-71510239 None:intergenic 25.0%
!! TTGATGATATTACATTCAAC+AGG - chr7_3:71510270-71510289 None:intergenic 25.0%
! TATTGTGAAATGAAAAGCTA+AGG - chr7_3:71510310-71510329 None:intergenic 25.0%
! ATATTTATCCTTATCTTCGA+TGG + chr7_3:71510338-71510357 Msa1121440:intron 25.0%
! AATCTACAATATTCAATGCA+TGG - chr7_3:71510380-71510399 None:intergenic 25.0%
! TGCATTGAATATTGTAGATT+TGG + chr7_3:71510380-71510399 Msa1121440:intron 25.0%
!! AAACTTTTGTGAAGTCATTT+AGG + chr7_3:71510516-71510535 Msa1121440:CDS 25.0%
! TAGAAGGAACTACAAATATA+AGG - chr7_3:71510768-71510787 None:intergenic 25.0%
! AAAACAAAAGGTGAAAAACA+AGG - chr7_3:71510850-71510869 None:intergenic 25.0%
! TAAGCTAAGTTCAAAACAAA+AGG - chr7_3:71510862-71510881 None:intergenic 25.0%
! AACATACAAAATCAGTGTAT+TGG + chr7_3:71510884-71510903 Msa1121440:three_prime_UTR 25.0%
TCTTTCTAGATTTAGTGAGA+AGG + chr7_3:71508933-71508952 Msa1121440:CDS 30.0%
CTTTCTAGATTTAGTGAGAA+GGG + chr7_3:71508934-71508953 Msa1121440:CDS 30.0%
ATCTACTACTTTAGCATTCA+AGG + chr7_3:71509243-71509262 Msa1121440:CDS 30.0%
GCAGCAAAACAAAAAATGAA+AGG - chr7_3:71509349-71509368 None:intergenic 30.0%
! AATTAAATCCATTTGGGACT+TGG - chr7_3:71509455-71509474 None:intergenic 30.0%
ATTCAGTGTAATTATGTCAG+TGG + chr7_3:71509644-71509663 Msa1121440:intron 30.0%
AGATGTCCAAATCCAAATTA+TGG + chr7_3:71509688-71509707 Msa1121440:intron 30.0%
! ATATGCTACAAGTGATAATG+TGG + chr7_3:71509790-71509809 Msa1121440:CDS 30.0%
!! ATCATCAACTGATTTTGAGT+TGG + chr7_3:71510282-71510301 Msa1121440:intron 30.0%
!! GTTAGAGCATTTTACAACTA+CGG - chr7_3:71510444-71510463 None:intergenic 30.0%
TTCAAAGTTCTATGAGATCA+TGG + chr7_3:71510577-71510596 Msa1121440:CDS 30.0%
! GAGATTACACAAGTTTTTGA+AGG + chr7_3:71510599-71510618 Msa1121440:CDS 30.0%
TAGATCAATTAGAAGACTTG+AGG + chr7_3:71510631-71510650 Msa1121440:CDS 30.0%
AATTCCATAGATTTCATGGT+TGG + chr7_3:71510798-71510817 Msa1121440:three_prime_UTR 30.0%
TTTGTTAGACGTACATTACA+TGG + chr7_3:71510945-71510964 Msa1121440:three_prime_UTR 30.0%
TCTTTCTAGATTTAGTGAGA+AGG + chr7_3:71508933-71508952 Msa1121440:CDS 30.0%
CTTTCTAGATTTAGTGAGAA+GGG + chr7_3:71508934-71508953 Msa1121440:CDS 30.0%
ATCTACTACTTTAGCATTCA+AGG + chr7_3:71509243-71509262 Msa1121440:CDS 30.0%
GCAGCAAAACAAAAAATGAA+AGG - chr7_3:71509349-71509368 None:intergenic 30.0%
! AATTAAATCCATTTGGGACT+TGG - chr7_3:71509455-71509474 None:intergenic 30.0%
ATTCAGTGTAATTATGTCAG+TGG + chr7_3:71509644-71509663 Msa1121440:intron 30.0%
AGATGTCCAAATCCAAATTA+TGG + chr7_3:71509688-71509707 Msa1121440:intron 30.0%
! ATATGCTACAAGTGATAATG+TGG + chr7_3:71509790-71509809 Msa1121440:CDS 30.0%
!! ATCATCAACTGATTTTGAGT+TGG + chr7_3:71510282-71510301 Msa1121440:intron 30.0%
!! GTTAGAGCATTTTACAACTA+CGG - chr7_3:71510444-71510463 None:intergenic 30.0%
TTCAAAGTTCTATGAGATCA+TGG + chr7_3:71510577-71510596 Msa1121440:CDS 30.0%
! GAGATTACACAAGTTTTTGA+AGG + chr7_3:71510599-71510618 Msa1121440:CDS 30.0%
TAGATCAATTAGAAGACTTG+AGG + chr7_3:71510631-71510650 Msa1121440:CDS 30.0%
AATTCCATAGATTTCATGGT+TGG + chr7_3:71510798-71510817 Msa1121440:three_prime_UTR 30.0%
TTTGTTAGACGTACATTACA+TGG + chr7_3:71510945-71510964 Msa1121440:three_prime_UTR 30.0%
TACTCGATGTCAAAACTTCA+AGG - chr7_3:71509376-71509395 None:intergenic 35.0%
TTCGGTGAAATGATATGTGT+CGG + chr7_3:71509546-71509565 Msa1121440:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr7_3:71509614-71509633 None:intergenic 35.0%
!! ATAATGTGGTCGACTTGAAA+GGG + chr7_3:71509804-71509823 Msa1121440:CDS 35.0%
AATGTTCAATGGTGTCTTCA+AGG + chr7_3:71509877-71509896 Msa1121440:CDS 35.0%
CACAATTACAAGATACTGCT+CGG + chr7_3:71510002-71510021 Msa1121440:CDS 35.0%
ATGCTAGTAATGTGACGAAT+TGG - chr7_3:71510072-71510091 None:intergenic 35.0%
AAGCTGAAAATGTTGTGAGT+AGG - chr7_3:71510406-71510425 None:intergenic 35.0%
!!! TCTCATTTTTTACCACAAGC+AGG + chr7_3:71510478-71510497 Msa1121440:intron 35.0%
GTCATTTAGGCCTGATATTA+TGG + chr7_3:71510529-71510548 Msa1121440:CDS 35.0%
ATTTAGGCCTGATATTATGG+AGG + chr7_3:71510532-71510551 Msa1121440:CDS 35.0%
TACACAACCTCCATAATATC+AGG - chr7_3:71510542-71510561 None:intergenic 35.0%
ATAGAAGCAGCTAAGTCAAT+TGG + chr7_3:71510671-71510690 Msa1121440:CDS 35.0%
AATTGGAGAAATTGAGCTTG+AGG + chr7_3:71510688-71510707 Msa1121440:CDS 35.0%
CTGCAATTCCATAGATTTCA+TGG + chr7_3:71510794-71510813 Msa1121440:three_prime_UTR 35.0%
ACAAAAGGTGAAAAACAAGG+TGG - chr7_3:71510847-71510866 None:intergenic 35.0%
TACTCGATGTCAAAACTTCA+AGG - chr7_3:71509376-71509395 None:intergenic 35.0%
TTCGGTGAAATGATATGTGT+CGG + chr7_3:71509546-71509565 Msa1121440:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr7_3:71509614-71509633 None:intergenic 35.0%
!! ATAATGTGGTCGACTTGAAA+GGG + chr7_3:71509804-71509823 Msa1121440:CDS 35.0%
AATGTTCAATGGTGTCTTCA+AGG + chr7_3:71509877-71509896 Msa1121440:CDS 35.0%
CACAATTACAAGATACTGCT+CGG + chr7_3:71510002-71510021 Msa1121440:CDS 35.0%
ATGCTAGTAATGTGACGAAT+TGG - chr7_3:71510072-71510091 None:intergenic 35.0%
AAGCTGAAAATGTTGTGAGT+AGG - chr7_3:71510406-71510425 None:intergenic 35.0%
!!! TCTCATTTTTTACCACAAGC+AGG + chr7_3:71510478-71510497 Msa1121440:intron 35.0%
GTCATTTAGGCCTGATATTA+TGG + chr7_3:71510529-71510548 Msa1121440:CDS 35.0%
ATTTAGGCCTGATATTATGG+AGG + chr7_3:71510532-71510551 Msa1121440:CDS 35.0%
TACACAACCTCCATAATATC+AGG - chr7_3:71510542-71510561 None:intergenic 35.0%
ATAGAAGCAGCTAAGTCAAT+TGG + chr7_3:71510671-71510690 Msa1121440:CDS 35.0%
AATTGGAGAAATTGAGCTTG+AGG + chr7_3:71510688-71510707 Msa1121440:CDS 35.0%
CTGCAATTCCATAGATTTCA+TGG + chr7_3:71510794-71510813 Msa1121440:three_prime_UTR 35.0%
ACAAAAGGTGAAAAACAAGG+TGG - chr7_3:71510847-71510866 None:intergenic 35.0%
TCTTCTTCAGGATCTAGAAG+TGG - chr7_3:71508964-71508983 None:intergenic 40.0%
AGATCCTGAAGAAGACATGA+AGG + chr7_3:71508969-71508988 Msa1121440:CDS 40.0%
!! AAAAGCATCCCGTAGAATAG+AGG + chr7_3:71509093-71509112 Msa1121440:CDS 40.0%
TCTCCAAAGCCTCTATTCTA+CGG - chr7_3:71509105-71509124 None:intergenic 40.0%
ATGAGCTCAAAGCAAGAAAG+AGG + chr7_3:71509266-71509285 Msa1121440:CDS 40.0%
TGAGCTCAAAGCAAGAAAGA+GGG + chr7_3:71509267-71509286 Msa1121440:CDS 40.0%
AAGCAAGAAAGAGGGTTCTT+CGG + chr7_3:71509275-71509294 Msa1121440:CDS 40.0%
CACAAACATTGGACACAACA+CGG + chr7_3:71509492-71509511 Msa1121440:intron 40.0%
TAATTATGTCAGTGGCGTGT+TGG + chr7_3:71509652-71509671 Msa1121440:intron 40.0%
!! GATAATGTGGTCGACTTGAA+AGG + chr7_3:71509803-71509822 Msa1121440:CDS 40.0%
TGGTGTCTTCAAGGACATAA+AGG + chr7_3:71509886-71509905 Msa1121440:CDS 40.0%
TGTCTTCAAGGACATAAAGG+TGG + chr7_3:71509889-71509908 Msa1121440:CDS 40.0%
!!! CTCTCCTATCTTGTTTTGTC+TGG + chr7_3:71509924-71509943 Msa1121440:CDS 40.0%
ATCAAGTTCTTCTCGAGGTT+TGG - chr7_3:71509972-71509991 None:intergenic 40.0%
ATTGGACACCATCGAAGATA+AGG - chr7_3:71510349-71510368 None:intergenic 40.0%
CAATGCATGGAATCGTTGAT+TGG - chr7_3:71510367-71510386 None:intergenic 40.0%
TTATGGAGGTTGTGTATGCT+TGG + chr7_3:71510546-71510565 Msa1121440:CDS 40.0%
TATGGAGGTTGTGTATGCTT+GGG + chr7_3:71510547-71510566 Msa1121440:CDS 40.0%
! GGAATTGCAGAGTTTCTAGA+AGG - chr7_3:71510784-71510803 None:intergenic 40.0%
CCTTCCAACCATGAAATCTA+TGG - chr7_3:71510805-71510824 None:intergenic 40.0%
CCATAGATTTCATGGTTGGA+AGG + chr7_3:71510802-71510821 Msa1121440:three_prime_UTR 40.0%
AGTCCTTAGTACAGAGCTTT+CGG - chr7_3:71511014-71511033 None:intergenic 40.0%
TGATAGGATCGTCGAATATC+TGG + chr7_3:71511062-71511081 Msa1121440:three_prime_UTR 40.0%
ATCGTCGAATATCTGGATGT+TGG + chr7_3:71511069-71511088 Msa1121440:three_prime_UTR 40.0%
TCTTCTTCAGGATCTAGAAG+TGG - chr7_3:71508964-71508983 None:intergenic 40.0%
AGATCCTGAAGAAGACATGA+AGG + chr7_3:71508969-71508988 Msa1121440:CDS 40.0%
!! AAAAGCATCCCGTAGAATAG+AGG + chr7_3:71509093-71509112 Msa1121440:CDS 40.0%
TCTCCAAAGCCTCTATTCTA+CGG - chr7_3:71509105-71509124 None:intergenic 40.0%
ATGAGCTCAAAGCAAGAAAG+AGG + chr7_3:71509266-71509285 Msa1121440:CDS 40.0%
TGAGCTCAAAGCAAGAAAGA+GGG + chr7_3:71509267-71509286 Msa1121440:CDS 40.0%
AAGCAAGAAAGAGGGTTCTT+CGG + chr7_3:71509275-71509294 Msa1121440:CDS 40.0%
CACAAACATTGGACACAACA+CGG + chr7_3:71509492-71509511 Msa1121440:intron 40.0%
TAATTATGTCAGTGGCGTGT+TGG + chr7_3:71509652-71509671 Msa1121440:intron 40.0%
!! GATAATGTGGTCGACTTGAA+AGG + chr7_3:71509803-71509822 Msa1121440:CDS 40.0%
TGGTGTCTTCAAGGACATAA+AGG + chr7_3:71509886-71509905 Msa1121440:CDS 40.0%
TGTCTTCAAGGACATAAAGG+TGG + chr7_3:71509889-71509908 Msa1121440:CDS 40.0%
!!! CTCTCCTATCTTGTTTTGTC+TGG + chr7_3:71509924-71509943 Msa1121440:CDS 40.0%
ATCAAGTTCTTCTCGAGGTT+TGG - chr7_3:71509972-71509991 None:intergenic 40.0%
ATTGGACACCATCGAAGATA+AGG - chr7_3:71510349-71510368 None:intergenic 40.0%
CAATGCATGGAATCGTTGAT+TGG - chr7_3:71510367-71510386 None:intergenic 40.0%
TTATGGAGGTTGTGTATGCT+TGG + chr7_3:71510546-71510565 Msa1121440:CDS 40.0%
TATGGAGGTTGTGTATGCTT+GGG + chr7_3:71510547-71510566 Msa1121440:CDS 40.0%
! GGAATTGCAGAGTTTCTAGA+AGG - chr7_3:71510784-71510803 None:intergenic 40.0%
CCTTCCAACCATGAAATCTA+TGG - chr7_3:71510805-71510824 None:intergenic 40.0%
CCATAGATTTCATGGTTGGA+AGG + chr7_3:71510802-71510821 Msa1121440:three_prime_UTR 40.0%
AGTCCTTAGTACAGAGCTTT+CGG - chr7_3:71511014-71511033 None:intergenic 40.0%
TGATAGGATCGTCGAATATC+TGG + chr7_3:71511062-71511081 Msa1121440:three_prime_UTR 40.0%
ATCGTCGAATATCTGGATGT+TGG + chr7_3:71511069-71511088 Msa1121440:three_prime_UTR 40.0%
CCTTTGGTATGTATAGACGC+AGG - chr7_3:71508861-71508880 None:intergenic 45.0%
CCTGCGTCTATACATACCAA+AGG + chr7_3:71508858-71508877 Msa1121440:CDS 45.0%
! ACCAAAGGATCTTTTGCCGT+TGG + chr7_3:71508873-71508892 Msa1121440:CDS 45.0%
TCCAACGGCAAAAGATCCTT+TGG - chr7_3:71508877-71508896 None:intergenic 45.0%
! GTGTTTTCTCGAGCTTCCAA+CGG - chr7_3:71508892-71508911 None:intergenic 45.0%
CACACCTTCATGTCTTCTTC+AGG - chr7_3:71508976-71508995 None:intergenic 45.0%
CTGAAGAAGACATGAAGGTG+TGG + chr7_3:71508974-71508993 Msa1121440:intron 45.0%
ATCCCGTAGAATAGAGGCTT+TGG + chr7_3:71509099-71509118 Msa1121440:CDS 45.0%
CTCCAAAGCCTCTATTCTAC+GGG - chr7_3:71509104-71509123 None:intergenic 45.0%
GTCCAATGTTTGTGCTTCAC+AGG - chr7_3:71509486-71509505 None:intergenic 45.0%
CTCGCCAGACAAAACAAGAT+AGG - chr7_3:71509931-71509950 None:intergenic 45.0%
AGCAGATCAAGTTCTTCTCG+AGG - chr7_3:71509977-71509996 None:intergenic 45.0%
CTTGCATTCAAGCTGAAGCT+GGG - chr7_3:71510035-71510054 None:intergenic 45.0%
CATCAATTTGCACCTGCTTG+TGG - chr7_3:71510493-71510512 None:intergenic 45.0%
GCTTGAGGCAAAGTTTGAAG+AGG + chr7_3:71510703-71510722 Msa1121440:CDS 45.0%
AGGCAGTGTCCAAAATCAAG+AGG + chr7_3:71510723-71510742 Msa1121440:CDS 45.0%
GGCAGTGTCCAAAATCAAGA+GGG + chr7_3:71510724-71510743 Msa1121440:CDS 45.0%
! GACGATGTCCCTCTTGATTT+TGG - chr7_3:71510735-71510754 None:intergenic 45.0%
TAGCCGAAAGCTCTGTACTA+AGG + chr7_3:71511008-71511027 Msa1121440:three_prime_UTR 45.0%
CCTTTGGTATGTATAGACGC+AGG - chr7_3:71508861-71508880 None:intergenic 45.0%
CCTGCGTCTATACATACCAA+AGG + chr7_3:71508858-71508877 Msa1121440:CDS 45.0%
! ACCAAAGGATCTTTTGCCGT+TGG + chr7_3:71508873-71508892 Msa1121440:CDS 45.0%
TCCAACGGCAAAAGATCCTT+TGG - chr7_3:71508877-71508896 None:intergenic 45.0%
! GTGTTTTCTCGAGCTTCCAA+CGG - chr7_3:71508892-71508911 None:intergenic 45.0%
CACACCTTCATGTCTTCTTC+AGG - chr7_3:71508976-71508995 None:intergenic 45.0%
CTGAAGAAGACATGAAGGTG+TGG + chr7_3:71508974-71508993 Msa1121440:intron 45.0%
ATCCCGTAGAATAGAGGCTT+TGG + chr7_3:71509099-71509118 Msa1121440:CDS 45.0%
CTCCAAAGCCTCTATTCTAC+GGG - chr7_3:71509104-71509123 None:intergenic 45.0%
GTCCAATGTTTGTGCTTCAC+AGG - chr7_3:71509486-71509505 None:intergenic 45.0%
CTCGCCAGACAAAACAAGAT+AGG - chr7_3:71509931-71509950 None:intergenic 45.0%
AGCAGATCAAGTTCTTCTCG+AGG - chr7_3:71509977-71509996 None:intergenic 45.0%
CTTGCATTCAAGCTGAAGCT+GGG - chr7_3:71510035-71510054 None:intergenic 45.0%
CATCAATTTGCACCTGCTTG+TGG - chr7_3:71510493-71510512 None:intergenic 45.0%
GCTTGAGGCAAAGTTTGAAG+AGG + chr7_3:71510703-71510722 Msa1121440:CDS 45.0%
AGGCAGTGTCCAAAATCAAG+AGG + chr7_3:71510723-71510742 Msa1121440:CDS 45.0%
GGCAGTGTCCAAAATCAAGA+GGG + chr7_3:71510724-71510743 Msa1121440:CDS 45.0%
! GACGATGTCCCTCTTGATTT+TGG - chr7_3:71510735-71510754 None:intergenic 45.0%
TAGCCGAAAGCTCTGTACTA+AGG + chr7_3:71511008-71511027 Msa1121440:three_prime_UTR 45.0%
!!! TATTTATAAAATTTTAGAAA+CGG - chr7_3:71510990-71511009 None:intergenic 5.0%
!!! TATTTATAAAATTTTAGAAA+CGG - chr7_3:71510990-71511009 None:intergenic 5.0%
CAAGAAAGAGGGTTCTTCGG+AGG + chr7_3:71509278-71509297 Msa1121440:CDS 50.0%
! TCCATTTGGGACTTGGCAGT+CGG - chr7_3:71509448-71509467 None:intergenic 50.0%
GTTTGTGCTTCACAGGCGAT+AGG - chr7_3:71509479-71509498 None:intergenic 50.0%
CGCCTGTGAAGCACAAACAT+TGG + chr7_3:71509481-71509500 Msa1121440:intron 50.0%
TGTCCGTGTCTGTGCTTCAT+AGG - chr7_3:71509572-71509591 None:intergenic 50.0%
!! TGTGGTCGACTTGAAAGGGA+AGG + chr7_3:71509808-71509827 Msa1121440:CDS 50.0%
CCTTGCATTCAAGCTGAAGC+TGG - chr7_3:71510036-71510055 None:intergenic 50.0%
CCAGCTTCAGCTTGAATGCA+AGG + chr7_3:71510033-71510052 Msa1121440:CDS 50.0%
GTTGTGTATGCTTGGGCGAA+AGG + chr7_3:71510554-71510573 Msa1121440:CDS 50.0%
CAAGAAAGAGGGTTCTTCGG+AGG + chr7_3:71509278-71509297 Msa1121440:CDS 50.0%
! TCCATTTGGGACTTGGCAGT+CGG - chr7_3:71509448-71509467 None:intergenic 50.0%
GTTTGTGCTTCACAGGCGAT+AGG - chr7_3:71509479-71509498 None:intergenic 50.0%
CGCCTGTGAAGCACAAACAT+TGG + chr7_3:71509481-71509500 Msa1121440:intron 50.0%
TGTCCGTGTCTGTGCTTCAT+AGG - chr7_3:71509572-71509591 None:intergenic 50.0%
!! TGTGGTCGACTTGAAAGGGA+AGG + chr7_3:71509808-71509827 Msa1121440:CDS 50.0%
CCTTGCATTCAAGCTGAAGC+TGG - chr7_3:71510036-71510055 None:intergenic 50.0%
CCAGCTTCAGCTTGAATGCA+AGG + chr7_3:71510033-71510052 Msa1121440:CDS 50.0%
GTTGTGTATGCTTGGGCGAA+AGG + chr7_3:71510554-71510573 Msa1121440:CDS 50.0%
AAGAGGGTTCTTCGGAGGCT+AGG + chr7_3:71509283-71509302 Msa1121440:CDS 55.0%
AGAGGGTTCTTCGGAGGCTA+GGG + chr7_3:71509284-71509303 Msa1121440:CDS 55.0%
CGGCCTATGAAGCACAGACA+CGG + chr7_3:71509566-71509585 Msa1121440:intron 55.0%
AAGAGGGTTCTTCGGAGGCT+AGG + chr7_3:71509283-71509302 Msa1121440:CDS 55.0%
AGAGGGTTCTTCGGAGGCTA+GGG + chr7_3:71509284-71509303 Msa1121440:CDS 55.0%
CGGCCTATGAAGCACAGACA+CGG + chr7_3:71509566-71509585 Msa1121440:intron 55.0%
GCCGACTGCCAAGTCCCAAA+TGG + chr7_3:71509444-71509463 Msa1121440:intron 60.0%
GCCGACTGCCAAGTCCCAAA+TGG + chr7_3:71509444-71509463 Msa1121440:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71508841 71511094 71508841 ID=Msa1121440;Name=Msa1121440
chr7_3 mRNA 71508841 71511094 71508841 ID=Msa1121440-mRNA-1;Parent=Msa1121440;Name=Msa1121440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.75|1|1|1|4|316|308
chr7_3 exon 71508841 71508990 71508841 ID=Msa1121440-mRNA-1:exon:18289;Parent=Msa1121440-mRNA-1
chr7_3 exon 71509073 71509305 71509073 ID=Msa1121440-mRNA-1:exon:18290;Parent=Msa1121440-mRNA-1
chr7_3 exon 71509790 71510054 71509790 ID=Msa1121440-mRNA-1:exon:18291;Parent=Msa1121440-mRNA-1
chr7_3 exon 71510500 71511094 71510500 ID=Msa1121440-mRNA-1:exon:18292;Parent=Msa1121440-mRNA-1
chr7_3 CDS 71508841 71508990 71508841 ID=Msa1121440-mRNA-1:cds;Parent=Msa1121440-mRNA-1
chr7_3 CDS 71509073 71509305 71509073 ID=Msa1121440-mRNA-1:cds;Parent=Msa1121440-mRNA-1
chr7_3 CDS 71509790 71510054 71509790 ID=Msa1121440-mRNA-1:cds;Parent=Msa1121440-mRNA-1
chr7_3 CDS 71510500 71510778 71510500 ID=Msa1121440-mRNA-1:cds;Parent=Msa1121440-mRNA-1
chr7_3 three_prime_UTR 71510779 71511094 71510779 ID=Msa1121440-mRNA-1:three_prime_utr;Parent=Msa1121440-mRNA-1
Gene Sequence

>Msa1121440

GTTAATGCAATTAGCAGCCTGCGTCTATACATACCAAAGGATCTTTTGCCGTTGGAAGCTCGAGAAAACACACTGAAAAAAGTTATGGAAACTCTTTCTAGATTTAGTGAGAAGGGATTGCCACTTCTAGATCCTGAAGAAGACATGAAGATACAAAGTAGCTCATACAAAAAAGCATCCCGTAGAATAGAGGCTTTGGAGAGACTATTTGAAAAGCATGAAATTGCGAAGTCGCCGCTTATAAAGCAAAAGTTAAAAGTTTTTCAGAGGAAGCTAGAGCTGACTGCAAAAATTAAGTCCATTAAGAAAACATTAAGATCATCTACTACTTTAGCATTCAAGGATGAGCTCAAAGCAAGAAAGAGGGTTCTTCGGAGGCTAGGATATGCTACAAGTGATAATGTGGTCGACTTGAAAGGGAAGGTTGCTTGTGAAATTAGTAGTGCAGATGAACTTACCTTAACAGAACTAATGTTCAATGGTGTCTTCAAGGACATAAAGGTGGAAGAGATGATTTCTCTCCTATCTTGTTTTGTCTGGCGAGAAAAAATCAACGATGCTGCCAAACCTCGAGAAGAACTTGATCTGCTCTATGCACAATTACAAGATACTGCTCGGAGAGTTGCCCAGCTTCAGCTTGAATGCAAGGTGCAAATTGATGTTGAAACTTTTGTGAAGTCATTTAGGCCTGATATTATGGAGGTTGTGTATGCTTGGGCGAAAGGTTCAAAGTTCTATGAGATCATGGAGATTACACAAGTTTTTGAAGGTAGCTTGATTAGATCAATTAGAAGACTTGAGGAAGTTCTTCAGCAGCTAATAGAAGCAGCTAAGTCAATTGGAGAAATTGAGCTTGAGGCAAAGTTTGAAGAGGCAGTGTCCAAAATCAAGAGGGACATCGTCTTTGCAGCATCCTTATATTTGTAG

Protein sequence

>Msa1121440

VNAISSLRLYIPKDLLPLEARENTLKKVMETLSRFSEKGLPLLDPEEDMKIQSSSYKKASRRIEALERLFEKHEIAKSPLIKQKLKVFQRKLELTAKIKSIKKTLRSSTTLAFKDELKARKRVLRRLGYATSDNVVDLKGKVACEISSADELTLTELMFNGVFKDIKVEEMISLLSCFVWREKINDAAKPREELDLLYAQLQDTARRVAQLQLECKVQIDVETFVKSFRPDIMEVVYAWAKGSKFYEIMEITQVFEGSLIRSIRRLEEVLQQLIEAAKSIGEIELEAKFEEAVSKIKRDIVFAASLYL*