Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611380 | AES86643.1 | 88.542 | 192 | 13 | 1 | 1 | 183 | 1 | 192 | 2.98e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0611380 | 0.820830 | 5.575601e-53 | -8.615850e-47 |
| Msa0017510 | Msa0611380 | 0.822921 | 1.828707e-53 | -8.615850e-47 |
| Msa0032500 | Msa0611380 | 0.813629 | 2.324096e-51 | -8.615850e-47 |
| Msa0036430 | Msa0611380 | 0.804149 | 2.481181e-49 | -8.615850e-47 |
| Msa0036960 | Msa0611380 | 0.834617 | 2.702453e-56 | -8.615850e-47 |
| Msa0044100 | Msa0611380 | 0.859371 | 4.331841e-63 | -8.615850e-47 |
| Msa0051790 | Msa0611380 | 0.803434 | 3.492700e-49 | -8.615850e-47 |
| Msa0078430 | Msa0611380 | 0.813926 | 1.998697e-51 | -8.615850e-47 |
| Msa0084500 | Msa0611380 | 0.801043 | 1.084694e-48 | -8.615850e-47 |
| Msa0095540 | Msa0611380 | 0.865434 | 5.923252e-65 | -8.615850e-47 |
| Msa0096000 | Msa0611380 | 0.802448 | 5.583931e-49 | -8.615850e-47 |
| Msa0112750 | Msa0611380 | 0.811646 | 6.308183e-51 | -8.615850e-47 |
| Msa0609430 | Msa0611380 | 0.802607 | 5.177582e-49 | -8.615850e-47 |
| Msa0611380 | Msa0618180 | 0.862225 | 5.893943e-64 | -8.615850e-47 |
| Msa0611380 | Msa0618220 | 0.844583 | 6.910444e-59 | -8.615850e-47 |
| Msa0611380 | Msa0618290 | 0.831105 | 2.015446e-55 | -8.615850e-47 |
| Msa0611380 | Msa0619990 | 0.836463 | 9.220983e-57 | -8.615850e-47 |
| Msa0611380 | Msa0628640 | 0.898984 | 3.104415e-77 | -8.615850e-47 |
| Msa0611380 | Msa0631120 | 0.904525 | 1.120727e-79 | -8.615850e-47 |
| Msa0611380 | Msa0650070 | 0.802802 | 4.719107e-49 | -8.615850e-47 |
| Msa0611380 | Msa0657970 | 0.808431 | 3.107835e-50 | -8.615850e-47 |
| Msa0611380 | Msa0666030 | 0.938533 | 5.754582e-99 | -8.615850e-47 |
| Msa0611380 | Msa0669340 | 0.892211 | 1.955969e-74 | -8.615850e-47 |
| Msa0611380 | Msa0684500 | 0.832910 | 7.220132e-56 | -8.615850e-47 |
| Msa0611380 | Msa0701970 | 0.880995 | 3.464544e-70 | -8.615850e-47 |
| Msa0611380 | Msa0706360 | 0.801524 | 8.646672e-49 | -8.615850e-47 |
| Msa0611380 | Msa0706420 | 0.825278 | 5.113986e-54 | -8.615850e-47 |
| Msa0611380 | Msa0709500 | 0.800559 | 1.361976e-48 | -8.615850e-47 |
| Msa0611380 | Msa0716450 | 0.887694 | 1.139376e-72 | -8.615850e-47 |
| Msa0611380 | Msa0717260 | 0.905706 | 3.232005e-80 | -8.615850e-47 |
| Msa0611380 | Msa0734230 | 0.839651 | 1.395036e-57 | -8.615850e-47 |
| Msa0611380 | Msa0758320 | 0.901823 | 1.814154e-78 | -8.615850e-47 |
| Msa0611380 | Msa0775440 | 0.851601 | 7.983043e-61 | -8.615850e-47 |
| Msa0611380 | Msa0799030 | 0.871437 | 6.840746e-67 | -8.615850e-47 |
| Msa0611380 | Msa0799700 | 0.882229 | 1.241337e-70 | -8.615850e-47 |
| Msa0611380 | Msa0810020 | 0.821008 | 5.073725e-53 | -8.615850e-47 |
| Msa0611380 | Msa0812820 | 0.877603 | 5.505436e-69 | -8.615850e-47 |
| Msa0611380 | Msa0837440 | 0.849501 | 3.104647e-60 | -8.615850e-47 |
| Msa0611380 | Msa0837980 | 0.899736 | 1.475036e-77 | -8.615850e-47 |
| Msa0611380 | Msa0853320 | 0.893491 | 5.981229e-75 | -8.615850e-47 |
| Msa0611380 | Msa0858840 | 0.806858 | 6.706967e-50 | -8.615850e-47 |
| Msa0611380 | Msa0870690 | 0.800699 | 1.275263e-48 | -8.615850e-47 |
| Msa0611380 | Msa0880140 | 0.822991 | 1.761229e-53 | -8.615850e-47 |
| Msa0611380 | Msa0880710 | 0.837518 | 4.958312e-57 | -8.615850e-47 |
| Msa0611380 | Msa0885060 | 0.803020 | 4.254002e-49 | -8.615850e-47 |
| Msa0611380 | Msa0936270 | 0.824187 | 9.245062e-54 | -8.615850e-47 |
| Msa0611380 | Msa0944770 | 0.806578 | 7.684429e-50 | -8.615850e-47 |
| Msa0611380 | Msa0966420 | 0.816119 | 6.518342e-52 | -8.615850e-47 |
| Msa0611380 | Msa0979510 | 0.813760 | 2.174785e-51 | -8.615850e-47 |
| Msa0611380 | Msa0981010 | 0.808944 | 2.414864e-50 | -8.615850e-47 |
| Msa0611380 | Msa1002620 | 0.855708 | 5.264131e-62 | -8.615850e-47 |
| Msa0611380 | Msa1007610 | -0.805260 | 1.454705e-49 | -8.615850e-47 |
| Msa0611380 | Msa1010110 | 0.825160 | 5.453868e-54 | -8.615850e-47 |
| Msa0611380 | Msa1020720 | 0.830666 | 2.583132e-55 | -8.615850e-47 |
| Msa0611380 | Msa1033560 | 0.842147 | 3.087768e-58 | -8.615850e-47 |
| Msa0611380 | Msa1073340 | 0.814420 | 1.555165e-51 | -8.615850e-47 |
| Msa0611380 | Msa1073350 | 0.816469 | 5.443404e-52 | -8.615850e-47 |
| Msa0611380 | Msa1098560 | 0.805342 | 1.397899e-49 | -8.615850e-47 |
| Msa0611380 | Msa1113850 | 0.857976 | 1.130255e-62 | -8.615850e-47 |
| Msa0611380 | Msa1125760 | 0.807060 | 6.079356e-50 | -8.615850e-47 |
| Msa0611380 | Msa1139410 | 0.807011 | 6.226384e-50 | -8.615850e-47 |
| Msa0611380 | Msa1160400 | 0.857240 | 1.867998e-62 | -8.615850e-47 |
| Msa0611380 | Msa1172450 | 0.804321 | 2.285063e-49 | -8.615850e-47 |
| Msa0611380 | Msa1172670 | 0.822990 | 1.762231e-53 | -8.615850e-47 |
| Msa0611380 | Msa1179460 | 0.840202 | 1.002130e-57 | -8.615850e-47 |
| Msa0611380 | Msa1190120 | 0.854807 | 9.626988e-62 | -8.615850e-47 |
| Msa0611380 | Msa1197590 | 0.841190 | 5.521025e-58 | -8.615850e-47 |
| Msa0611380 | Msa1201890 | 0.817549 | 3.113733e-52 | -8.615850e-47 |
| Msa0611380 | Msa1203000 | 0.878373 | 2.960850e-69 | -8.615850e-47 |
| Msa0611380 | Msa1205960 | 0.818458 | 1.939582e-52 | -8.615850e-47 |
| Msa0611380 | Msa1211550 | 0.868815 | 4.932656e-66 | -8.615850e-47 |
| Msa0611380 | Msa1217940 | 0.860215 | 2.412596e-63 | -8.615850e-47 |
| Msa0611380 | Msa1218480 | 0.837852 | 4.069266e-57 | -8.615850e-47 |
| Msa0611380 | Msa1219260 | 0.880547 | 5.016410e-70 | -8.615850e-47 |
| Msa0611380 | Msa1227950 | 0.819058 | 1.417482e-52 | -8.615850e-47 |
| Msa0611380 | Msa1227970 | 0.822240 | 2.632967e-53 | -8.615850e-47 |
| Msa0611380 | Msa1254700 | 0.841965 | 3.448977e-58 | -8.615850e-47 |
| Msa0611380 | Msa1255280 | 0.857572 | 1.489757e-62 | -8.615850e-47 |
| Msa0611380 | Msa1258050 | 0.865048 | 7.831613e-65 | -8.615850e-47 |
| Msa0611380 | Msa1266960 | 0.880219 | 6.571306e-70 | -8.615850e-47 |
| Msa0611380 | Msa1289280 | 0.808341 | 3.247477e-50 | -8.615850e-47 |
| Msa0611380 | Msa1291870 | 0.837872 | 4.021635e-57 | -8.615850e-47 |
| Msa0611380 | Msa1308130 | 0.803120 | 4.056879e-49 | -8.615850e-47 |
| Msa0611380 | Msa1339940 | 0.853747 | 1.947884e-61 | -8.615850e-47 |
| Msa0611380 | Msa1342430 | 0.812783 | 3.563219e-51 | -8.615850e-47 |
| Msa0611380 | Msa1345420 | 0.809008 | 2.339051e-50 | -8.615850e-47 |
| Msa0611380 | Msa1369700 | 0.878535 | 2.596313e-69 | -8.615850e-47 |
| Msa0611380 | Msa1395870 | 0.837995 | 3.739916e-57 | -8.615850e-47 |
| Msa0611380 | Msa1397250 | 0.848011 | 8.041572e-60 | -8.615850e-47 |
| Msa0611380 | Msa1397340 | 0.817097 | 3.935431e-52 | -8.615850e-47 |
| Msa0611380 | Msa1399560 | 0.879723 | 9.875677e-70 | -8.615850e-47 |
| Msa0611380 | Msa1401150 | 0.851328 | 9.535934e-61 | -8.615850e-47 |
| Msa0611380 | Msa1423450 | 0.810699 | 1.012051e-50 | -8.615850e-47 |
| Msa0611380 | Msa1437190 | 0.884957 | 1.230152e-71 | -8.615850e-47 |
| Msa0611380 | Msa1440340 | 0.843652 | 1.228471e-58 | -8.615850e-47 |
| Msa0611380 | Msa1443840 | 0.883326 | 4.931763e-71 | -8.615850e-47 |
| Msa0611380 | Msa1449730 | 0.833811 | 4.302377e-56 | -8.615850e-47 |
| Msa0611380 | Msa1452060 | 0.855554 | 5.836429e-62 | -8.615850e-47 |
| Msa0611380 | Msa1460380 | 0.879983 | 7.981309e-70 | -8.615850e-47 |
| Msa0611380 | Msa1460890 | 0.824181 | 9.274718e-54 | -8.615850e-47 |
| Msa0141100 | Msa0611380 | 0.870010 | 2.014616e-66 | -8.615850e-47 |
| Msa0153420 | Msa0611380 | 0.814199 | 1.740250e-51 | -8.615850e-47 |
| Msa0157290 | Msa0611380 | 0.822131 | 2.790440e-53 | -8.615850e-47 |
| Msa0173090 | Msa0611380 | 0.807320 | 5.353475e-50 | -8.615850e-47 |
| Msa0183750 | Msa0611380 | 0.875021 | 4.278781e-68 | -8.615850e-47 |
| Msa0191040 | Msa0611380 | 0.877034 | 8.683924e-69 | -8.615850e-47 |
| Msa0206800 | Msa0611380 | 0.838589 | 2.629368e-57 | -8.615850e-47 |
| Msa0220300 | Msa0611380 | 0.862266 | 5.722336e-64 | -8.615850e-47 |
| Msa0225600 | Msa0611380 | 0.837284 | 5.691981e-57 | -8.615850e-47 |
| Msa0233340 | Msa0611380 | 0.877362 | 6.676529e-69 | -8.615850e-47 |
| Msa0236440 | Msa0611380 | 0.817497 | 3.198181e-52 | -8.615850e-47 |
| Msa0374850 | Msa0611380 | 0.871161 | 8.434225e-67 | -8.615850e-47 |
| Msa0375090 | Msa0611380 | 0.865619 | 5.179568e-65 | -8.615850e-47 |
| Msa0385670 | Msa0611380 | 0.818060 | 2.386779e-52 | -8.615850e-47 |
| Msa0435670 | Msa0611380 | 0.811308 | 7.472781e-51 | -8.615850e-47 |
| Msa0470340 | Msa0611380 | 0.865402 | 6.062150e-65 | -8.615850e-47 |
| Msa0470860 | Msa0611380 | 0.859110 | 5.186320e-63 | -8.615850e-47 |
| Msa0480950 | Msa0611380 | 0.866721 | 2.318213e-65 | -8.615850e-47 |
| Msa0481110 | Msa0611380 | 0.843277 | 1.546994e-58 | -8.615850e-47 |
| Msa0251240 | Msa0611380 | 0.878438 | 2.807645e-69 | -8.615850e-47 |
| Msa0266450 | Msa0611380 | 0.846729 | 1.809042e-59 | -8.615850e-47 |
| Msa0271040 | Msa0611380 | 0.816185 | 6.298190e-52 | -8.615850e-47 |
| Msa0282210 | Msa0611380 | 0.819035 | 1.434323e-52 | -8.615850e-47 |
| Msa0288190 | Msa0611380 | 0.854312 | 1.338178e-61 | -8.615850e-47 |
| Msa0288200 | Msa0611380 | 0.841820 | 3.767670e-58 | -8.615850e-47 |
| Msa0290010 | Msa0611380 | 0.822994 | 1.758584e-53 | -8.615850e-47 |
| Msa0309350 | Msa0611380 | 0.817527 | 3.148983e-52 | -8.615850e-47 |
| Msa0311690 | Msa0611380 | 0.863929 | 1.752852e-64 | -8.615850e-47 |
| Msa0315250 | Msa0611380 | 0.834669 | 2.622602e-56 | -8.615850e-47 |
| Msa0326540 | Msa0611380 | 0.839153 | 1.878959e-57 | -8.615850e-47 |
| Msa0334500 | Msa0611380 | 0.832421 | 9.543777e-56 | -8.615850e-47 |
| Msa0483860 | Msa0611380 | 0.808405 | 3.147099e-50 | -8.615850e-47 |
| Msa0484780 | Msa0611380 | 0.807288 | 5.437579e-50 | -8.615850e-47 |
| Msa0503580 | Msa0611380 | 0.815852 | 7.475580e-52 | -8.615850e-47 |
| Msa0520510 | Msa0611380 | 0.833351 | 5.607502e-56 | -8.615850e-47 |
| Msa0531430 | Msa0611380 | 0.947750 | 3.661486e-106 | -8.615850e-47 |
| Msa0534570 | Msa0611380 | 0.881952 | 1.564278e-70 | -8.615850e-47 |
| Msa0534590 | Msa0611380 | 0.918014 | 2.626372e-86 | -8.615850e-47 |
| Msa0548620 | Msa0611380 | 0.809557 | 1.783684e-50 | -8.615850e-47 |
| Msa0565600 | Msa0611380 | 0.882569 | 9.331737e-71 | -8.615850e-47 |
| Msa0590800 | Msa0611380 | 0.892090 | 2.187336e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611380 | MtrunA17_Chr4g0004451 | 88.024 | 167 | 11 | 1 | 1 | 158 | 1 | 167 | 9.33e-105 | 298 |
| Msa0611380 | MtrunA17_Chr2g0331861 | 37.179 | 156 | 86 | 3 | 34 | 179 | 48 | 201 | 4.66e-32 | 114 |
| Msa0611380 | MtrunA17_Chr6g0485381 | 28.736 | 174 | 104 | 5 | 23 | 182 | 64 | 231 | 2.80e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611380 | AT1G52330.1 | 36.095 | 169 | 96 | 3 | 20 | 178 | 45 | 211 | 6.35e-30 | 109 |
| Msa0611380 | AT4G13270.1 | 34.091 | 176 | 102 | 4 | 16 | 181 | 44 | 215 | 2.99e-26 | 100 |
| Msa0611380 | AT1G52330.2 | 34.899 | 149 | 87 | 2 | 15 | 153 | 40 | 188 | 3.89e-23 | 92.4 |
Find 59 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATACCTTGAAAATATT+AGG | 0.153293 | 4_2:-59548589 | None:intergenic |
| ATTTCAATTTCTGGGTTTAA+TGG | 0.237479 | 4_2:-59548220 | None:intergenic |
| GATGCTGTGTCTTCCTATTA+TGG | 0.256639 | 4_2:+59548152 | Msa0611380:CDS |
| TGTTTGGGGAGCTTGAGTTT+GGG | 0.259099 | 4_2:+59548452 | Msa0611380:CDS |
| GTGTTTGGGGAGCTTGAGTT+TGG | 0.299830 | 4_2:+59548451 | Msa0611380:CDS |
| TGGGGTTCAGAACATGTGTT+TGG | 0.308086 | 4_2:+59548436 | Msa0611380:CDS |
| AAAACTATCATGTGAGGTTT+TGG | 0.312823 | 4_2:+59549546 | Msa0611380:CDS |
| ATAATACCTTGAAAATATTA+GGG | 0.323188 | 4_2:-59548588 | None:intergenic |
| GGGGTTCAGAACATGTGTTT+GGG | 0.324110 | 4_2:+59548437 | Msa0611380:CDS |
| GTGGTATAACGAGGTAGTTT+TGG | 0.338427 | 4_2:-59548129 | None:intergenic |
| GGGTTGGCACGTGAAGGGTT+GGG | 0.340777 | 4_2:+59548417 | Msa0611380:CDS |
| GTTGAAGTTGTGGGAAATCT+TGG | 0.341989 | 4_2:+59548547 | Msa0611380:CDS |
| TTAGAAACACTATCCATAAT+AGG | 0.345966 | 4_2:-59548165 | None:intergenic |
| GGTTGGCACGTGAAGGGTTG+GGG | 0.363964 | 4_2:+59548418 | Msa0611380:CDS |
| ATGAAATAAGTACAATAGTT+AGG | 0.379256 | 4_2:-59549947 | None:intergenic |
| GGGGTTGGCACGTGAAGGGT+TGG | 0.423435 | 4_2:+59548416 | Msa0611380:CDS |
| ATTAAACCCAGAAATTGAAA+TGG | 0.437917 | 4_2:+59548222 | Msa0611380:CDS |
| GTTTAATTTATATACATTGT+CGG | 0.461755 | 4_2:+59549889 | Msa0611380:three_prime_UTR |
| AGCTTGGTCACGTGGAAACT+AGG | 0.465057 | 4_2:+59548395 | Msa0611380:CDS |
| CAGCACTTAACGGTGGTAAC+GGG | 0.465549 | 4_2:-59548276 | None:intergenic |
| GTTTCTAACATTGTGTATAA+CGG | 0.469131 | 4_2:+59548180 | Msa0611380:CDS |
| CATACTGCTGTTGAAGTTGT+GGG | 0.471858 | 4_2:+59548538 | Msa0611380:CDS |
| GCTTGGTCACGTGGAAACTA+GGG | 0.477209 | 4_2:+59548396 | Msa0611380:CDS |
| GTTTGGGGAGCTTGAGTTTG+GGG | 0.477621 | 4_2:+59548453 | Msa0611380:CDS |
| GGGACTTCCTTCTGCAGATG+TGG | 0.484731 | 4_2:+59548474 | Msa0611380:CDS |
| ATGTATACATATTGATCGAT+GGG | 0.497592 | 4_2:-59549824 | None:intergenic |
| AATGACACATCAGCACTTAA+CGG | 0.520732 | 4_2:-59548286 | None:intergenic |
| AACTAGGGGTTGGCACGTGA+AGG | 0.522677 | 4_2:+59548411 | Msa0611380:CDS |
| AATGGCTATGCACAATGGTA+TGG | 0.525922 | 4_2:-59549582 | None:intergenic |
| GCATAGCCATTGTGTTGAAA+AGG | 0.528766 | 4_2:+59549594 | Msa0611380:CDS |
| TCAGCACTTAACGGTGGTAA+CGG | 0.531723 | 4_2:-59548277 | None:intergenic |
| TTTGGGGAGCTTGAGTTTGG+GGG | 0.538897 | 4_2:+59548454 | Msa0611380:CDS |
| TCATACTGCTGTTGAAGTTG+TGG | 0.544382 | 4_2:+59548537 | Msa0611380:CDS |
| GATGTATACATATTGATCGA+TGG | 0.547773 | 4_2:-59549825 | None:intergenic |
| GCAGGATCTTGCTAAGGCTA+GGG | 0.562521 | 4_2:+59548507 | Msa0611380:CDS |
| TGCAGGATCTTGCTAAGGCT+AGG | 0.563770 | 4_2:+59548506 | Msa0611380:CDS |
| AAGTATCGTGGGCATAAGCT+TGG | 0.565318 | 4_2:+59548379 | Msa0611380:CDS |
| ATGGTGCAAAGCGCAAAAGA+TGG | 0.568573 | 4_2:+59549796 | Msa0611380:three_prime_UTR |
| TTTGATGCAGGATCTTGCTA+AGG | 0.569783 | 4_2:+59548501 | Msa0611380:CDS |
| CAACTAGATGAGGTTGATGT+TGG | 0.578124 | 4_2:+59548352 | Msa0611380:intron |
| TTTCTGGGTTTAATGGCCAT+AGG | 0.582895 | 4_2:-59548213 | None:intergenic |
| GAAAATATTAGGGAAGTGAA+AGG | 0.584040 | 4_2:-59548578 | None:intergenic |
| GGGTTCAGAACATGTGTTTG+GGG | 0.587098 | 4_2:+59548438 | Msa0611380:CDS |
| ACTAGGGGTTGGCACGTGAA+GGG | 0.587913 | 4_2:+59548412 | Msa0611380:CDS |
| ATAGGTAAAACTATCATGTG+AGG | 0.588436 | 4_2:+59549540 | Msa0611380:intron |
| AGATGTGGCACATTTGATGC+AGG | 0.604705 | 4_2:+59548489 | Msa0611380:CDS |
| GATGTTGGCATCAAGTATCG+TGG | 0.608808 | 4_2:+59548367 | Msa0611380:CDS |
| TGGGCATAAGCTTGGTCACG+TGG | 0.610574 | 4_2:+59548387 | Msa0611380:CDS |
| AAATGTGCCACATCTGCAGA+AGG | 0.617429 | 4_2:-59548481 | None:intergenic |
| ATGTTGGCATCAAGTATCGT+GGG | 0.619053 | 4_2:+59548368 | Msa0611380:CDS |
| AACCGTTAAAATTCACAACA+AGG | 0.623265 | 4_2:+59548315 | Msa0611380:CDS |
| GTCACGTGGAAACTAGGGGT+TGG | 0.637913 | 4_2:+59548401 | Msa0611380:CDS |
| AATGTTCTGCAATGCAACCA+TGG | 0.646791 | 4_2:+59549777 | Msa0611380:three_prime_UTR |
| AACACAATGGCTATGCACAA+TGG | 0.647439 | 4_2:-59549587 | None:intergenic |
| CACAGCATCGTGGTATAACG+AGG | 0.651045 | 4_2:-59548138 | None:intergenic |
| CTTGGTCACGTGGAAACTAG+GGG | 0.662536 | 4_2:+59548397 | Msa0611380:CDS |
| TGTATACATATTGATCGATG+GGG | 0.709786 | 4_2:-59549823 | None:intergenic |
| GACACATCAGCACTTAACGG+TGG | 0.729489 | 4_2:-59548283 | None:intergenic |
| AATAGGAAGACACAGCATCG+TGG | 0.762856 | 4_2:-59548148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAAAAGAATGAAAT+TGG | - | chr4_2:59549442-59549461 | None:intergenic | 10.0% |
| !! | TAATAATAAAAGAATGAAAT+TGG | - | chr4_2:59549442-59549461 | None:intergenic | 10.0% |
| !! | ATAATACCTTGAAAATATTA+GGG | - | chr4_2:59548591-59548610 | None:intergenic | 15.0% |
| !! | TATAATACCTTGAAAATATT+AGG | - | chr4_2:59548592-59548611 | None:intergenic | 15.0% |
| !!! | TCATTCTTTTATTATTAACA+TGG | + | chr4_2:59549445-59549464 | Msa0611380:intron | 15.0% |
| !!! | TTTGTTTTTCATGTTTTAAT+AGG | + | chr4_2:59549522-59549541 | Msa0611380:intron | 15.0% |
| !!! | GTTTAATTTATATACATTGT+CGG | + | chr4_2:59549889-59549908 | Msa0611380:three_prime_UTR | 15.0% |
| !! | ATAATACCTTGAAAATATTA+GGG | - | chr4_2:59548591-59548610 | None:intergenic | 15.0% |
| !! | TATAATACCTTGAAAATATT+AGG | - | chr4_2:59548592-59548611 | None:intergenic | 15.0% |
| !!! | TCATTCTTTTATTATTAACA+TGG | + | chr4_2:59549445-59549464 | Msa0611380:intron | 15.0% |
| !!! | TTTGTTTTTCATGTTTTAAT+AGG | + | chr4_2:59549522-59549541 | Msa0611380:intron | 15.0% |
| !!! | GTTTAATTTATATACATTGT+CGG | + | chr4_2:59549889-59549908 | Msa0611380:three_prime_UTR | 15.0% |
| !!! | AATTTTCCATTTCAATTTCT+GGG | - | chr4_2:59548231-59548250 | None:intergenic | 20.0% |
| !!! | AAATTTTCCATTTCAATTTC+TGG | - | chr4_2:59548232-59548251 | None:intergenic | 20.0% |
| !! | TGGAATATGTAATTAATTGA+AGG | - | chr4_2:59548631-59548650 | None:intergenic | 20.0% |
| !!! | TAGTAACCGATTTTAAAATT+CGG | + | chr4_2:59548820-59548839 | Msa0611380:intron | 20.0% |
| !! | AAAATCAATTCTCATTTCAA+TGG | + | chr4_2:59549129-59549148 | Msa0611380:intron | 20.0% |
| !! | AAAGTGATAAAGGAAAAAAA+TGG | - | chr4_2:59549487-59549506 | None:intergenic | 20.0% |
| !! | AAAACAAAATCCAAGTTATT+TGG | - | chr4_2:59549510-59549529 | None:intergenic | 20.0% |
| !!! | TTTATGCTTTGAATGATAAA+AGG | + | chr4_2:59549736-59549755 | Msa0611380:intron | 20.0% |
| !!! | TTTTTTCAGTATACAAAAGA+TGG | + | chr4_2:59549920-59549939 | Msa0611380:three_prime_UTR | 20.0% |
| !! | ATGAAATAAGTACAATAGTT+AGG | - | chr4_2:59549950-59549969 | None:intergenic | 20.0% |
| !!! | AATTTTCCATTTCAATTTCT+GGG | - | chr4_2:59548231-59548250 | None:intergenic | 20.0% |
| !!! | AAATTTTCCATTTCAATTTC+TGG | - | chr4_2:59548232-59548251 | None:intergenic | 20.0% |
| !! | TGGAATATGTAATTAATTGA+AGG | - | chr4_2:59548631-59548650 | None:intergenic | 20.0% |
| !!! | TAGTAACCGATTTTAAAATT+CGG | + | chr4_2:59548820-59548839 | Msa0611380:intron | 20.0% |
| !! | AAAATCAATTCTCATTTCAA+TGG | + | chr4_2:59549129-59549148 | Msa0611380:intron | 20.0% |
| !! | AAAGTGATAAAGGAAAAAAA+TGG | - | chr4_2:59549487-59549506 | None:intergenic | 20.0% |
| !! | AAAACAAAATCCAAGTTATT+TGG | - | chr4_2:59549510-59549529 | None:intergenic | 20.0% |
| !!! | TTTATGCTTTGAATGATAAA+AGG | + | chr4_2:59549736-59549755 | Msa0611380:intron | 20.0% |
| !!! | TTTTTTCAGTATACAAAAGA+TGG | + | chr4_2:59549920-59549939 | Msa0611380:three_prime_UTR | 20.0% |
| !! | ATGAAATAAGTACAATAGTT+AGG | - | chr4_2:59549950-59549969 | None:intergenic | 20.0% |
| ! | TTAGAAACACTATCCATAAT+AGG | - | chr4_2:59548168-59548187 | None:intergenic | 25.0% |
| ! | GTTTCTAACATTGTGTATAA+CGG | + | chr4_2:59548180-59548199 | Msa0611380:CDS | 25.0% |
| !! | ATTTCAATTTCTGGGTTTAA+TGG | - | chr4_2:59548223-59548242 | None:intergenic | 25.0% |
| ! | ATTAAACCCAGAAATTGAAA+TGG | + | chr4_2:59548222-59548241 | Msa0611380:CDS | 25.0% |
| !!! | AACCTTGTTGTGAATTTTAA+CGG | - | chr4_2:59548320-59548339 | None:intergenic | 25.0% |
| !!! | CATCAACCGAATTTTAAAAT+CGG | - | chr4_2:59548829-59548848 | None:intergenic | 25.0% |
| !! | AATTCTCATTTCAATGGATT+TGG | + | chr4_2:59549135-59549154 | Msa0611380:intron | 25.0% |
| !! | AGAATGAAATTGGTCTATAA+AGG | - | chr4_2:59549432-59549451 | None:intergenic | 25.0% |
| ! | AGTTATTTGGAAAGTGATAA+AGG | - | chr4_2:59549497-59549516 | None:intergenic | 25.0% |
| ! | TTATCACTTTCCAAATAACT+TGG | + | chr4_2:59549497-59549516 | Msa0611380:intron | 25.0% |
| ! | ATGTATACATATTGATCGAT+GGG | - | chr4_2:59549827-59549846 | None:intergenic | 25.0% |
| ! | TTAGAAACACTATCCATAAT+AGG | - | chr4_2:59548168-59548187 | None:intergenic | 25.0% |
| ! | GTTTCTAACATTGTGTATAA+CGG | + | chr4_2:59548180-59548199 | Msa0611380:CDS | 25.0% |
| !! | ATTTCAATTTCTGGGTTTAA+TGG | - | chr4_2:59548223-59548242 | None:intergenic | 25.0% |
| ! | ATTAAACCCAGAAATTGAAA+TGG | + | chr4_2:59548222-59548241 | Msa0611380:CDS | 25.0% |
| !!! | AACCTTGTTGTGAATTTTAA+CGG | - | chr4_2:59548320-59548339 | None:intergenic | 25.0% |
| !!! | CATCAACCGAATTTTAAAAT+CGG | - | chr4_2:59548829-59548848 | None:intergenic | 25.0% |
| !! | AATTCTCATTTCAATGGATT+TGG | + | chr4_2:59549135-59549154 | Msa0611380:intron | 25.0% |
| !! | AGAATGAAATTGGTCTATAA+AGG | - | chr4_2:59549432-59549451 | None:intergenic | 25.0% |
| ! | AGTTATTTGGAAAGTGATAA+AGG | - | chr4_2:59549497-59549516 | None:intergenic | 25.0% |
| ! | TTATCACTTTCCAAATAACT+TGG | + | chr4_2:59549497-59549516 | Msa0611380:intron | 25.0% |
| ! | ATGTATACATATTGATCGAT+GGG | - | chr4_2:59549827-59549846 | None:intergenic | 25.0% |
| AACCGTTAAAATTCACAACA+AGG | + | chr4_2:59548315-59548334 | Msa0611380:CDS | 30.0% | |
| GAAAATATTAGGGAAGTGAA+AGG | - | chr4_2:59548581-59548600 | None:intergenic | 30.0% | |
| ! | TCACTTCCCTAATATTTTCA+AGG | + | chr4_2:59548582-59548601 | Msa0611380:CDS | 30.0% |
| ACCGCATGACTAAAATAATT+CGG | + | chr4_2:59548854-59548873 | Msa0611380:intron | 30.0% | |
| !!! | ACCGAATTATTTTAGTCATG+CGG | - | chr4_2:59548858-59548877 | None:intergenic | 30.0% |
| ! | TTTTCACTTGTACCATCAAA+CGG | - | chr4_2:59548907-59548926 | None:intergenic | 30.0% |
| !! | AGATAATCAAGAGCATTTCA+TGG | - | chr4_2:59549093-59549112 | None:intergenic | 30.0% |
| TAATCATCTCCCATTTCTTA+TGG | - | chr4_2:59549188-59549207 | None:intergenic | 30.0% | |
| AAAAAGAAAGAGACATTGAG+TGG | + | chr4_2:59549207-59549226 | Msa0611380:intron | 30.0% | |
| AAAAGAAAGAGACATTGAGT+GGG | + | chr4_2:59549208-59549227 | Msa0611380:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4_2:59549295-59549314 | Msa0611380:intron | 30.0% | |
| CATAATATATGCAAGGTTTG+AGG | + | chr4_2:59549302-59549321 | Msa0611380:intron | 30.0% | |
| !!! | GATTTTTTTTTGTGGTGTCT+GGG | - | chr4_2:59549336-59549355 | None:intergenic | 30.0% |
| !!! | TGATTTTTTTTTGTGGTGTC+TGG | - | chr4_2:59549337-59549356 | None:intergenic | 30.0% |
| !!! | GAGCTTGTGATTTTTTTTTG+TGG | - | chr4_2:59549344-59549363 | None:intergenic | 30.0% |
| GTGATAAAGGAAAAAAATGG+AGG | - | chr4_2:59549484-59549503 | None:intergenic | 30.0% | |
| ATAGGTAAAACTATCATGTG+AGG | + | chr4_2:59549540-59549559 | Msa0611380:intron | 30.0% | |
| ! | AAAACTATCATGTGAGGTTT+TGG | + | chr4_2:59549546-59549565 | Msa0611380:CDS | 30.0% |
| TGTATACATATTGATCGATG+GGG | - | chr4_2:59549826-59549845 | None:intergenic | 30.0% | |
| GATGTATACATATTGATCGA+TGG | - | chr4_2:59549828-59549847 | None:intergenic | 30.0% | |
| AACCGTTAAAATTCACAACA+AGG | + | chr4_2:59548315-59548334 | Msa0611380:CDS | 30.0% | |
| GAAAATATTAGGGAAGTGAA+AGG | - | chr4_2:59548581-59548600 | None:intergenic | 30.0% | |
| ! | TCACTTCCCTAATATTTTCA+AGG | + | chr4_2:59548582-59548601 | Msa0611380:CDS | 30.0% |
| ACCGCATGACTAAAATAATT+CGG | + | chr4_2:59548854-59548873 | Msa0611380:intron | 30.0% | |
| !!! | ACCGAATTATTTTAGTCATG+CGG | - | chr4_2:59548858-59548877 | None:intergenic | 30.0% |
| ! | TTTTCACTTGTACCATCAAA+CGG | - | chr4_2:59548907-59548926 | None:intergenic | 30.0% |
| !! | AGATAATCAAGAGCATTTCA+TGG | - | chr4_2:59549093-59549112 | None:intergenic | 30.0% |
| TAATCATCTCCCATTTCTTA+TGG | - | chr4_2:59549188-59549207 | None:intergenic | 30.0% | |
| AAAAAGAAAGAGACATTGAG+TGG | + | chr4_2:59549207-59549226 | Msa0611380:intron | 30.0% | |
| AAAAGAAAGAGACATTGAGT+GGG | + | chr4_2:59549208-59549227 | Msa0611380:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4_2:59549295-59549314 | Msa0611380:intron | 30.0% | |
| CATAATATATGCAAGGTTTG+AGG | + | chr4_2:59549302-59549321 | Msa0611380:intron | 30.0% | |
| !!! | GATTTTTTTTTGTGGTGTCT+GGG | - | chr4_2:59549336-59549355 | None:intergenic | 30.0% |
| !!! | TGATTTTTTTTTGTGGTGTC+TGG | - | chr4_2:59549337-59549356 | None:intergenic | 30.0% |
| !!! | GAGCTTGTGATTTTTTTTTG+TGG | - | chr4_2:59549344-59549363 | None:intergenic | 30.0% |
| GTGATAAAGGAAAAAAATGG+AGG | - | chr4_2:59549484-59549503 | None:intergenic | 30.0% | |
| ATAGGTAAAACTATCATGTG+AGG | + | chr4_2:59549540-59549559 | Msa0611380:intron | 30.0% | |
| ! | AAAACTATCATGTGAGGTTT+TGG | + | chr4_2:59549546-59549565 | Msa0611380:CDS | 30.0% |
| TGTATACATATTGATCGATG+GGG | - | chr4_2:59549826-59549845 | None:intergenic | 30.0% | |
| GATGTATACATATTGATCGA+TGG | - | chr4_2:59549828-59549847 | None:intergenic | 30.0% | |
| ! | TGGTATAACGAGGTAGTTTT+GGG | - | chr4_2:59548131-59548150 | None:intergenic | 35.0% |
| AATGACACATCAGCACTTAA+CGG | - | chr4_2:59548289-59548308 | None:intergenic | 35.0% | |
| !! | TTCACAACAAGGTTTTGTAC+TGG | + | chr4_2:59548326-59548345 | Msa0611380:intron | 35.0% |
| CACTAAATCGGTCACTAAAT+CGG | - | chr4_2:59548671-59548690 | None:intergenic | 35.0% | |
| CTCTAAATCGGTCACTAAAT+CGG | - | chr4_2:59548683-59548702 | None:intergenic | 35.0% | |
| TGTTTAGTCGGTCTCTAAAT+CGG | - | chr4_2:59548695-59548714 | None:intergenic | 35.0% | |
| AACAAGTGAAAAGGCCAAAT+TGG | + | chr4_2:59548711-59548730 | Msa0611380:intron | 35.0% | |
| CCGGTTGCTAATAATGTTAA+CGG | - | chr4_2:59548749-59548768 | None:intergenic | 35.0% | |
| CCGTTAACATTATTAGCAAC+CGG | + | chr4_2:59548746-59548765 | Msa0611380:intron | 35.0% | |
| TTAACATTATTAGCAACCGG+TGG | + | chr4_2:59548749-59548768 | Msa0611380:intron | 35.0% | |
| !!! | TTTGAAGGCATTTTGCAAAC+CGG | + | chr4_2:59548772-59548791 | Msa0611380:intron | 35.0% |
| AAATGACCTAGCGATCTATT+TGG | - | chr4_2:59548801-59548820 | None:intergenic | 35.0% | |
| ! | GTTTGATGGTACAAGTGAAA+AGG | + | chr4_2:59548906-59548925 | Msa0611380:intron | 35.0% |
| ! | TTTTGCTGAGCCATAAGAAA+TGG | + | chr4_2:59549175-59549194 | Msa0611380:intron | 35.0% |
| TTTGCTGAGCCATAAGAAAT+GGG | + | chr4_2:59549176-59549195 | Msa0611380:intron | 35.0% | |
| GCACAATATAGCGACTATAA+AGG | - | chr4_2:59549388-59549407 | None:intergenic | 35.0% | |
| ! | GCTTTACCTTTTCAACACAA+TGG | - | chr4_2:59549603-59549622 | None:intergenic | 35.0% |
| AAGCTTAAGAGTTATAGACC+TGG | + | chr4_2:59549619-59549638 | Msa0611380:intron | 35.0% | |
| AGGTCGTATAACAATCTCTT+TGG | + | chr4_2:59549650-59549669 | Msa0611380:intron | 35.0% | |
| CTTTGAATGATAAAAGGCGA+AGG | + | chr4_2:59549742-59549761 | Msa0611380:intron | 35.0% | |
| ! | TGGTATAACGAGGTAGTTTT+GGG | - | chr4_2:59548131-59548150 | None:intergenic | 35.0% |
| AATGACACATCAGCACTTAA+CGG | - | chr4_2:59548289-59548308 | None:intergenic | 35.0% | |
| !! | TTCACAACAAGGTTTTGTAC+TGG | + | chr4_2:59548326-59548345 | Msa0611380:intron | 35.0% |
| CACTAAATCGGTCACTAAAT+CGG | - | chr4_2:59548671-59548690 | None:intergenic | 35.0% | |
| CTCTAAATCGGTCACTAAAT+CGG | - | chr4_2:59548683-59548702 | None:intergenic | 35.0% | |
| TGTTTAGTCGGTCTCTAAAT+CGG | - | chr4_2:59548695-59548714 | None:intergenic | 35.0% | |
| AACAAGTGAAAAGGCCAAAT+TGG | + | chr4_2:59548711-59548730 | Msa0611380:intron | 35.0% | |
| CCGGTTGCTAATAATGTTAA+CGG | - | chr4_2:59548749-59548768 | None:intergenic | 35.0% | |
| CCGTTAACATTATTAGCAAC+CGG | + | chr4_2:59548746-59548765 | Msa0611380:intron | 35.0% | |
| TTAACATTATTAGCAACCGG+TGG | + | chr4_2:59548749-59548768 | Msa0611380:intron | 35.0% | |
| !!! | TTTGAAGGCATTTTGCAAAC+CGG | + | chr4_2:59548772-59548791 | Msa0611380:intron | 35.0% |
| AAATGACCTAGCGATCTATT+TGG | - | chr4_2:59548801-59548820 | None:intergenic | 35.0% | |
| ! | GTTTGATGGTACAAGTGAAA+AGG | + | chr4_2:59548906-59548925 | Msa0611380:intron | 35.0% |
| ! | TTTTGCTGAGCCATAAGAAA+TGG | + | chr4_2:59549175-59549194 | Msa0611380:intron | 35.0% |
| TTTGCTGAGCCATAAGAAAT+GGG | + | chr4_2:59549176-59549195 | Msa0611380:intron | 35.0% | |
| GCACAATATAGCGACTATAA+AGG | - | chr4_2:59549388-59549407 | None:intergenic | 35.0% | |
| ! | GCTTTACCTTTTCAACACAA+TGG | - | chr4_2:59549603-59549622 | None:intergenic | 35.0% |
| AAGCTTAAGAGTTATAGACC+TGG | + | chr4_2:59549619-59549638 | Msa0611380:intron | 35.0% | |
| AGGTCGTATAACAATCTCTT+TGG | + | chr4_2:59549650-59549669 | Msa0611380:intron | 35.0% | |
| CTTTGAATGATAAAAGGCGA+AGG | + | chr4_2:59549742-59549761 | Msa0611380:intron | 35.0% | |
| ! | GTGGTATAACGAGGTAGTTT+TGG | - | chr4_2:59548132-59548151 | None:intergenic | 40.0% |
| GATGCTGTGTCTTCCTATTA+TGG | + | chr4_2:59548152-59548171 | Msa0611380:CDS | 40.0% | |
| !!! | TAACGGCGTTGTTTTTCCTA+TGG | + | chr4_2:59548197-59548216 | Msa0611380:CDS | 40.0% |
| TTTCTGGGTTTAATGGCCAT+AGG | - | chr4_2:59548216-59548235 | None:intergenic | 40.0% | |
| !! | CAACTAGATGAGGTTGATGT+TGG | + | chr4_2:59548352-59548371 | Msa0611380:intron | 40.0% |
| ! | ATGTTGGCATCAAGTATCGT+GGG | + | chr4_2:59548368-59548387 | Msa0611380:CDS | 40.0% |
| TTTGATGCAGGATCTTGCTA+AGG | + | chr4_2:59548501-59548520 | Msa0611380:CDS | 40.0% | |
| TCATACTGCTGTTGAAGTTG+TGG | + | chr4_2:59548537-59548556 | Msa0611380:CDS | 40.0% | |
| CATACTGCTGTTGAAGTTGT+GGG | + | chr4_2:59548538-59548557 | Msa0611380:CDS | 40.0% | |
| GTTGAAGTTGTGGGAAATCT+TGG | + | chr4_2:59548547-59548566 | Msa0611380:CDS | 40.0% | |
| !!! | CGGTCGATATGGCTTTATTT+TGG | - | chr4_2:59548651-59548670 | None:intergenic | 40.0% |
| GACCGACTAAACAAGTGAAA+AGG | + | chr4_2:59548702-59548721 | Msa0611380:intron | 40.0% | |
| ! | GGCCTTTTCACTTGTTTAGT+CGG | - | chr4_2:59548707-59548726 | None:intergenic | 40.0% |
| TAGTGTATACCACCGTTTGA+TGG | + | chr4_2:59548892-59548911 | Msa0611380:intron | 40.0% | |
| CTCAGCAAAACTATTCAAGG+TGG | - | chr4_2:59549165-59549184 | None:intergenic | 40.0% | |
| TGGCTCAGCAAAACTATTCA+AGG | - | chr4_2:59549168-59549187 | None:intergenic | 40.0% | |
| AACCAACTGAGTTAAGCTCA+CGG | - | chr4_2:59549273-59549292 | None:intergenic | 40.0% | |
| TGAGCTTAACTCAGTTGGTT+GGG | + | chr4_2:59549273-59549292 | Msa0611380:intron | 40.0% | |
| CACAAGCTCACAACTTCTAT+CGG | + | chr4_2:59549355-59549374 | Msa0611380:intron | 40.0% | |
| AATGGCTATGCACAATGGTA+TGG | - | chr4_2:59549585-59549604 | None:intergenic | 40.0% | |
| AACACAATGGCTATGCACAA+TGG | - | chr4_2:59549590-59549609 | None:intergenic | 40.0% | |
| GCATAGCCATTGTGTTGAAA+AGG | + | chr4_2:59549594-59549613 | Msa0611380:CDS | 40.0% | |
| ATTGTTATACGACCTCACCA+AGG | - | chr4_2:59549645-59549664 | None:intergenic | 40.0% | |
| AATGTTCTGCAATGCAACCA+TGG | + | chr4_2:59549777-59549796 | Msa0611380:three_prime_UTR | 40.0% | |
| ! | GTGGTATAACGAGGTAGTTT+TGG | - | chr4_2:59548132-59548151 | None:intergenic | 40.0% |
| GATGCTGTGTCTTCCTATTA+TGG | + | chr4_2:59548152-59548171 | Msa0611380:CDS | 40.0% | |
| !!! | TAACGGCGTTGTTTTTCCTA+TGG | + | chr4_2:59548197-59548216 | Msa0611380:CDS | 40.0% |
| TTTCTGGGTTTAATGGCCAT+AGG | - | chr4_2:59548216-59548235 | None:intergenic | 40.0% | |
| !! | CAACTAGATGAGGTTGATGT+TGG | + | chr4_2:59548352-59548371 | Msa0611380:intron | 40.0% |
| ! | ATGTTGGCATCAAGTATCGT+GGG | + | chr4_2:59548368-59548387 | Msa0611380:CDS | 40.0% |
| TTTGATGCAGGATCTTGCTA+AGG | + | chr4_2:59548501-59548520 | Msa0611380:CDS | 40.0% | |
| TCATACTGCTGTTGAAGTTG+TGG | + | chr4_2:59548537-59548556 | Msa0611380:CDS | 40.0% | |
| CATACTGCTGTTGAAGTTGT+GGG | + | chr4_2:59548538-59548557 | Msa0611380:CDS | 40.0% | |
| GTTGAAGTTGTGGGAAATCT+TGG | + | chr4_2:59548547-59548566 | Msa0611380:CDS | 40.0% | |
| !!! | CGGTCGATATGGCTTTATTT+TGG | - | chr4_2:59548651-59548670 | None:intergenic | 40.0% |
| GACCGACTAAACAAGTGAAA+AGG | + | chr4_2:59548702-59548721 | Msa0611380:intron | 40.0% | |
| ! | GGCCTTTTCACTTGTTTAGT+CGG | - | chr4_2:59548707-59548726 | None:intergenic | 40.0% |
| TAGTGTATACCACCGTTTGA+TGG | + | chr4_2:59548892-59548911 | Msa0611380:intron | 40.0% | |
| CTCAGCAAAACTATTCAAGG+TGG | - | chr4_2:59549165-59549184 | None:intergenic | 40.0% | |
| TGGCTCAGCAAAACTATTCA+AGG | - | chr4_2:59549168-59549187 | None:intergenic | 40.0% | |
| AACCAACTGAGTTAAGCTCA+CGG | - | chr4_2:59549273-59549292 | None:intergenic | 40.0% | |
| TGAGCTTAACTCAGTTGGTT+GGG | + | chr4_2:59549273-59549292 | Msa0611380:intron | 40.0% | |
| CACAAGCTCACAACTTCTAT+CGG | + | chr4_2:59549355-59549374 | Msa0611380:intron | 40.0% | |
| AATGGCTATGCACAATGGTA+TGG | - | chr4_2:59549585-59549604 | None:intergenic | 40.0% | |
| AACACAATGGCTATGCACAA+TGG | - | chr4_2:59549590-59549609 | None:intergenic | 40.0% | |
| GCATAGCCATTGTGTTGAAA+AGG | + | chr4_2:59549594-59549613 | Msa0611380:CDS | 40.0% | |
| ATTGTTATACGACCTCACCA+AGG | - | chr4_2:59549645-59549664 | None:intergenic | 40.0% | |
| AATGTTCTGCAATGCAACCA+TGG | + | chr4_2:59549777-59549796 | Msa0611380:three_prime_UTR | 40.0% | |
| AATAGGAAGACACAGCATCG+TGG | - | chr4_2:59548151-59548170 | None:intergenic | 45.0% | |
| TCAGCACTTAACGGTGGTAA+CGG | - | chr4_2:59548280-59548299 | None:intergenic | 45.0% | |
| GTACTGGATGCAACTAGATG+AGG | + | chr4_2:59548342-59548361 | Msa0611380:intron | 45.0% | |
| ! | GATGTTGGCATCAAGTATCG+TGG | + | chr4_2:59548367-59548386 | Msa0611380:CDS | 45.0% |
| ! | AAGTATCGTGGGCATAAGCT+TGG | + | chr4_2:59548379-59548398 | Msa0611380:CDS | 45.0% |
| TGGGGTTCAGAACATGTGTT+TGG | + | chr4_2:59548436-59548455 | Msa0611380:CDS | 45.0% | |
| GGGGTTCAGAACATGTGTTT+GGG | + | chr4_2:59548437-59548456 | Msa0611380:CDS | 45.0% | |
| GGGTTCAGAACATGTGTTTG+GGG | + | chr4_2:59548438-59548457 | Msa0611380:CDS | 45.0% | |
| TGTTTGGGGAGCTTGAGTTT+GGG | + | chr4_2:59548452-59548471 | Msa0611380:CDS | 45.0% | |
| AAATGTGCCACATCTGCAGA+AGG | - | chr4_2:59548484-59548503 | None:intergenic | 45.0% | |
| AGATGTGGCACATTTGATGC+AGG | + | chr4_2:59548489-59548508 | Msa0611380:CDS | 45.0% | |
| GGTCACTAAATCGGTCGATA+TGG | - | chr4_2:59548662-59548681 | None:intergenic | 45.0% | |
| GGCCAAATTGGTCGCTAAAT+TGG | + | chr4_2:59548723-59548742 | Msa0611380:intron | 45.0% | |
| GGCCAATTTAGCGACCAATT+TGG | - | chr4_2:59548728-59548747 | None:intergenic | 45.0% | |
| ATTAGCAACCGGTGGTTTGA+AGG | + | chr4_2:59548757-59548776 | Msa0611380:intron | 45.0% | |
| GCAAAATGCCTTCAAACCAC+CGG | - | chr4_2:59548768-59548787 | None:intergenic | 45.0% | |
| !! | CTAGCGATCTATTTGGTGTC+CGG | - | chr4_2:59548794-59548813 | None:intergenic | 45.0% |
| TCACTTGTACCATCAAACGG+TGG | - | chr4_2:59548904-59548923 | None:intergenic | 45.0% | |
| ACCAACTGAGTTAAGCTCAC+GGG | - | chr4_2:59549272-59549291 | None:intergenic | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+TGG | + | chr4_2:59549272-59549291 | Msa0611380:intron | 45.0% | |
| AAGAGTTATAGACCTGGCCT+TGG | + | chr4_2:59549625-59549644 | Msa0611380:intron | 45.0% | |
| ! | ATCTTTTGCGCTTTGCACCA+TGG | - | chr4_2:59549797-59549816 | None:intergenic | 45.0% |
| ATGGTGCAAAGCGCAAAAGA+TGG | + | chr4_2:59549796-59549815 | Msa0611380:three_prime_UTR | 45.0% | |
| AATAGGAAGACACAGCATCG+TGG | - | chr4_2:59548151-59548170 | None:intergenic | 45.0% | |
| TCAGCACTTAACGGTGGTAA+CGG | - | chr4_2:59548280-59548299 | None:intergenic | 45.0% | |
| GTACTGGATGCAACTAGATG+AGG | + | chr4_2:59548342-59548361 | Msa0611380:intron | 45.0% | |
| ! | GATGTTGGCATCAAGTATCG+TGG | + | chr4_2:59548367-59548386 | Msa0611380:CDS | 45.0% |
| ! | AAGTATCGTGGGCATAAGCT+TGG | + | chr4_2:59548379-59548398 | Msa0611380:CDS | 45.0% |
| TGGGGTTCAGAACATGTGTT+TGG | + | chr4_2:59548436-59548455 | Msa0611380:CDS | 45.0% | |
| GGGGTTCAGAACATGTGTTT+GGG | + | chr4_2:59548437-59548456 | Msa0611380:CDS | 45.0% | |
| GGGTTCAGAACATGTGTTTG+GGG | + | chr4_2:59548438-59548457 | Msa0611380:CDS | 45.0% | |
| TGTTTGGGGAGCTTGAGTTT+GGG | + | chr4_2:59548452-59548471 | Msa0611380:CDS | 45.0% | |
| AAATGTGCCACATCTGCAGA+AGG | - | chr4_2:59548484-59548503 | None:intergenic | 45.0% | |
| AGATGTGGCACATTTGATGC+AGG | + | chr4_2:59548489-59548508 | Msa0611380:CDS | 45.0% | |
| GGTCACTAAATCGGTCGATA+TGG | - | chr4_2:59548662-59548681 | None:intergenic | 45.0% | |
| GGCCAAATTGGTCGCTAAAT+TGG | + | chr4_2:59548723-59548742 | Msa0611380:intron | 45.0% | |
| GGCCAATTTAGCGACCAATT+TGG | - | chr4_2:59548728-59548747 | None:intergenic | 45.0% | |
| ATTAGCAACCGGTGGTTTGA+AGG | + | chr4_2:59548757-59548776 | Msa0611380:intron | 45.0% | |
| GCAAAATGCCTTCAAACCAC+CGG | - | chr4_2:59548768-59548787 | None:intergenic | 45.0% | |
| !! | CTAGCGATCTATTTGGTGTC+CGG | - | chr4_2:59548794-59548813 | None:intergenic | 45.0% |
| TCACTTGTACCATCAAACGG+TGG | - | chr4_2:59548904-59548923 | None:intergenic | 45.0% | |
| ACCAACTGAGTTAAGCTCAC+GGG | - | chr4_2:59549272-59549291 | None:intergenic | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+TGG | + | chr4_2:59549272-59549291 | Msa0611380:intron | 45.0% | |
| AAGAGTTATAGACCTGGCCT+TGG | + | chr4_2:59549625-59549644 | Msa0611380:intron | 45.0% | |
| ! | ATCTTTTGCGCTTTGCACCA+TGG | - | chr4_2:59549797-59549816 | None:intergenic | 45.0% |
| ATGGTGCAAAGCGCAAAAGA+TGG | + | chr4_2:59549796-59549815 | Msa0611380:three_prime_UTR | 45.0% | |
| CACAGCATCGTGGTATAACG+AGG | - | chr4_2:59548141-59548160 | None:intergenic | 50.0% | |
| CAGCACTTAACGGTGGTAAC+GGG | - | chr4_2:59548279-59548298 | None:intergenic | 50.0% | |
| GACACATCAGCACTTAACGG+TGG | - | chr4_2:59548286-59548305 | None:intergenic | 50.0% | |
| AGCTTGGTCACGTGGAAACT+AGG | + | chr4_2:59548395-59548414 | Msa0611380:CDS | 50.0% | |
| GCTTGGTCACGTGGAAACTA+GGG | + | chr4_2:59548396-59548415 | Msa0611380:CDS | 50.0% | |
| CTTGGTCACGTGGAAACTAG+GGG | + | chr4_2:59548397-59548416 | Msa0611380:CDS | 50.0% | |
| GTGTTTGGGGAGCTTGAGTT+TGG | + | chr4_2:59548451-59548470 | Msa0611380:CDS | 50.0% | |
| GTTTGGGGAGCTTGAGTTTG+GGG | + | chr4_2:59548453-59548472 | Msa0611380:CDS | 50.0% | |
| TTTGGGGAGCTTGAGTTTGG+GGG | + | chr4_2:59548454-59548473 | Msa0611380:CDS | 50.0% | |
| TGCAGGATCTTGCTAAGGCT+AGG | + | chr4_2:59548506-59548525 | Msa0611380:CDS | 50.0% | |
| GCAGGATCTTGCTAAGGCTA+GGG | + | chr4_2:59548507-59548526 | Msa0611380:CDS | 50.0% | |
| CGGACACCAAATAGATCGCT+AGG | + | chr4_2:59548792-59548811 | Msa0611380:intron | 50.0% | |
| TCCCGTGAGCTTAACTCAGT+TGG | + | chr4_2:59549268-59549287 | Msa0611380:intron | 50.0% | |
| !! | TTATAGACCTGGCCTTGGTG+AGG | + | chr4_2:59549630-59549649 | Msa0611380:intron | 50.0% |
| CACAGCATCGTGGTATAACG+AGG | - | chr4_2:59548141-59548160 | None:intergenic | 50.0% | |
| CAGCACTTAACGGTGGTAAC+GGG | - | chr4_2:59548279-59548298 | None:intergenic | 50.0% | |
| GACACATCAGCACTTAACGG+TGG | - | chr4_2:59548286-59548305 | None:intergenic | 50.0% | |
| AGCTTGGTCACGTGGAAACT+AGG | + | chr4_2:59548395-59548414 | Msa0611380:CDS | 50.0% | |
| GCTTGGTCACGTGGAAACTA+GGG | + | chr4_2:59548396-59548415 | Msa0611380:CDS | 50.0% | |
| CTTGGTCACGTGGAAACTAG+GGG | + | chr4_2:59548397-59548416 | Msa0611380:CDS | 50.0% | |
| GTGTTTGGGGAGCTTGAGTT+TGG | + | chr4_2:59548451-59548470 | Msa0611380:CDS | 50.0% | |
| GTTTGGGGAGCTTGAGTTTG+GGG | + | chr4_2:59548453-59548472 | Msa0611380:CDS | 50.0% | |
| TTTGGGGAGCTTGAGTTTGG+GGG | + | chr4_2:59548454-59548473 | Msa0611380:CDS | 50.0% | |
| TGCAGGATCTTGCTAAGGCT+AGG | + | chr4_2:59548506-59548525 | Msa0611380:CDS | 50.0% | |
| GCAGGATCTTGCTAAGGCTA+GGG | + | chr4_2:59548507-59548526 | Msa0611380:CDS | 50.0% | |
| CGGACACCAAATAGATCGCT+AGG | + | chr4_2:59548792-59548811 | Msa0611380:intron | 50.0% | |
| TCCCGTGAGCTTAACTCAGT+TGG | + | chr4_2:59549268-59549287 | Msa0611380:intron | 50.0% | |
| !! | TTATAGACCTGGCCTTGGTG+AGG | + | chr4_2:59549630-59549649 | Msa0611380:intron | 50.0% |
| TGGGCATAAGCTTGGTCACG+TGG | + | chr4_2:59548387-59548406 | Msa0611380:CDS | 55.0% | |
| GTCACGTGGAAACTAGGGGT+TGG | + | chr4_2:59548401-59548420 | Msa0611380:CDS | 55.0% | |
| ! | AACTAGGGGTTGGCACGTGA+AGG | + | chr4_2:59548411-59548430 | Msa0611380:CDS | 55.0% |
| ! | ACTAGGGGTTGGCACGTGAA+GGG | + | chr4_2:59548412-59548431 | Msa0611380:CDS | 55.0% |
| GGGACTTCCTTCTGCAGATG+TGG | + | chr4_2:59548474-59548493 | Msa0611380:CDS | 55.0% | |
| TATACGACCTCACCAAGGCC+AGG | - | chr4_2:59549640-59549659 | None:intergenic | 55.0% | |
| TGGGCATAAGCTTGGTCACG+TGG | + | chr4_2:59548387-59548406 | Msa0611380:CDS | 55.0% | |
| GTCACGTGGAAACTAGGGGT+TGG | + | chr4_2:59548401-59548420 | Msa0611380:CDS | 55.0% | |
| ! | AACTAGGGGTTGGCACGTGA+AGG | + | chr4_2:59548411-59548430 | Msa0611380:CDS | 55.0% |
| ! | ACTAGGGGTTGGCACGTGAA+GGG | + | chr4_2:59548412-59548431 | Msa0611380:CDS | 55.0% |
| GGGACTTCCTTCTGCAGATG+TGG | + | chr4_2:59548474-59548493 | Msa0611380:CDS | 55.0% | |
| TATACGACCTCACCAAGGCC+AGG | - | chr4_2:59549640-59549659 | None:intergenic | 55.0% | |
| ! | GGGTTGGCACGTGAAGGGTT+GGG | + | chr4_2:59548417-59548436 | Msa0611380:CDS | 60.0% |
| GGTTGGCACGTGAAGGGTTG+GGG | + | chr4_2:59548418-59548437 | Msa0611380:CDS | 60.0% | |
| ! | GGGTTGGCACGTGAAGGGTT+GGG | + | chr4_2:59548417-59548436 | Msa0611380:CDS | 60.0% |
| GGTTGGCACGTGAAGGGTTG+GGG | + | chr4_2:59548418-59548437 | Msa0611380:CDS | 60.0% | |
| ! | GGGGTTGGCACGTGAAGGGT+TGG | + | chr4_2:59548416-59548435 | Msa0611380:CDS | 65.0% |
| ! | GGGGTTGGCACGTGAAGGGT+TGG | + | chr4_2:59548416-59548435 | Msa0611380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59548106 | 59549984 | 59548106 | ID=Msa0611380;Name=Msa0611380 |
| chr4_2 | mRNA | 59548106 | 59549984 | 59548106 | ID=Msa0611380-mRNA-1;Parent=Msa0611380;Name=Msa0611380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|1|0.33|0.25|4|215|184 |
| chr4_2 | exon | 59548106 | 59548336 | 59548106 | ID=Msa0611380-mRNA-1:exon:15784;Parent=Msa0611380-mRNA-1 |
| chr4_2 | exon | 59548364 | 59548603 | 59548364 | ID=Msa0611380-mRNA-1:exon:15785;Parent=Msa0611380-mRNA-1 |
| chr4_2 | exon | 59549544 | 59549615 | 59549544 | ID=Msa0611380-mRNA-1:exon:15786;Parent=Msa0611380-mRNA-1 |
| chr4_2 | exon | 59549758 | 59549984 | 59549758 | ID=Msa0611380-mRNA-1:exon:15787;Parent=Msa0611380-mRNA-1 |
| chr4_2 | CDS | 59548106 | 59548336 | 59548106 | ID=Msa0611380-mRNA-1:cds;Parent=Msa0611380-mRNA-1 |
| chr4_2 | CDS | 59548364 | 59548603 | 59548364 | ID=Msa0611380-mRNA-1:cds;Parent=Msa0611380-mRNA-1 |
| chr4_2 | CDS | 59549544 | 59549615 | 59549544 | ID=Msa0611380-mRNA-1:cds;Parent=Msa0611380-mRNA-1 |
| chr4_2 | CDS | 59549758 | 59549769 | 59549758 | ID=Msa0611380-mRNA-1:cds;Parent=Msa0611380-mRNA-1 |
| chr4_2 | three_prime_UTR | 59549770 | 59549984 | 59549770 | ID=Msa0611380-mRNA-1:three_prime_utr;Parent=Msa0611380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
