AlfalfaGEDB | Msa1297090

M. sativa cultivar zhongmu-4 / Msa1297090

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF01535.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297090	XP_003608531.1	96.237	877	31	1	1	875	1	877	0.0	1755

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297090	sp\|Q9FJW6\|PP451_ARATH	56.330	703	298	6	13	712	12	708	0.0	804

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297090	G7JE27	96.237	877	31	1	1	875	1	877	0.0	1755

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1297090	-0.816673	4.898591e-52	-8.615850e-47
Msa0006700	Msa1297090	0.838303	3.115315e-57	-8.615850e-47
Msa0007230	Msa1297090	0.807036	6.148381e-50	-8.615850e-47
Msa0008340	Msa1297090	0.815654	8.277368e-52	-8.615850e-47
Msa0008850	Msa1297090	0.838931	2.145282e-57	-8.615850e-47
Msa0011180	Msa1297090	0.806417	8.311084e-50	-8.615850e-47
Msa0011720	Msa1297090	0.864910	8.653379e-65	-8.615850e-47
Msa0012040	Msa1297090	0.814219	1.722345e-51	-8.615850e-47
Msa0012440	Msa1297090	0.804728	1.879238e-49	-8.615850e-47
Msa0020630	Msa1297090	0.837895	3.968456e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297090	MtrunA17_Chr4g0054111	96.203	474	18	0	1	474	1	474	0.0	954
Msa1297090	MtrunA17_Chr4g0054121	89.125	423	42	2	457	875	7	429	0.0	755
Msa1297090	MtrunA17_Chr4g0021311	39.721	574	315	10	162	711	235	801	3.07e-141	439
Msa1297090	MtrunA17_Chr3g0099661	23.932	468	332	10	226	689	171	618	1.80e-31	132
Msa1297090	MtrunA17_Chr3g0136851	24.363	353	238	7	279	606	218	566	1.82e-24	110
Msa1297090	MtrunA17_Chr3g0136851	21.875	352	250	5	259	588	758	1106	5.17e-22	102
Msa1297090	MtrunA17_Chr3g0136851	23.397	312	204	7	263	565	377	662	1.22e-17	88.6
Msa1297090	MtrunA17_Chr3g0136851	23.620	326	223	7	262	565	271	592	2.30e-15	80.9
Msa1297090	MtrunA17_Chr2g0331911	23.485	396	235	10	258	592	228	616	1.28e-23	106
Msa1297090	MtrunA17_Chr2g0331911	25.424	236	135	5	368	565	182	414	1.42e-11	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297090	AT5G67570.1	56.330	703	298	6	13	712	12	708	0.0	804
Msa1297090	AT1G30610.2	39.068	558	315	8	172	709	417	969	1.28e-127	408
Msa1297090	AT1G30610.1	37.201	586	315	9	172	709	417	997	7.42e-123	396
Msa1297090	AT5G02860.1	22.512	422	306	7	222	641	134	536	4.56e-29	125
Msa1297090	AT5G02860.1	19.682	503	308	9	261	685	314	798	4.98e-21	99.4
Msa1297090	AT5G02860.4	22.512	422	306	7	222	641	134	536	4.56e-29	125
Msa1297090	AT5G02860.4	19.682	503	308	9	261	685	314	798	4.98e-21	99.4
Msa1297090	AT5G02860.2	22.512	422	306	7	222	641	134	536	4.56e-29	125
Msa1297090	AT5G02860.2	19.682	503	308	9	261	685	314	798	4.98e-21	99.4
Msa1297090	AT5G02860.5	22.512	422	306	7	222	641	134	536	4.56e-29	125

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Find 183 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGAAGGGCTTCTTT+CGG	0.395682	8_3:-57017880	None:intergenic
AAACACTACCTTTGTATGTA+AGG	0.356473	8_3:-57018926	None:intergenic
AAACCTAACAGAGCAACTTA+TGG	0.362730	8_3:+57018375	Msa1297090:CDS
AAAGACGAGTAAACGGAGTG+AGG	0.680603	8_3:+57016967	Msa1297090:CDS
AACACTACCTTTGTATGTAA+GGG	0.493151	8_3:-57018925	None:intergenic
AACTTATGGACTTGCAATGG+AGG	0.594715	8_3:+57018389	Msa1297090:CDS
AAGCGGTTGTTGGATGATCT+TGG	0.483832	8_3:+57020647	Msa1297090:CDS
AAGCTCTATCTGTGGTTCAA+TGG	0.429976	8_3:+57017408	Msa1297090:CDS
AAGGTGAATAATGAGCACAG+AGG	0.832510	8_3:+57016803	Msa1297090:CDS
AAGTTGTATGTGTATGCATC+TGG	0.492981	8_3:-57019771	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCAAAAACAAACGTTAG+AGG	+	chr8_3:57016637-57016656	Msa1297090:CDS	30.0%
ACAATTCACACAAAATTTGG+AGG	+	chr8_3:57016697-57016716	Msa1297090:CDS	30.0%
CAAAATTTGGAGGAAAATGA+AGG	+	chr8_3:57016707-57016726	Msa1297090:CDS	30.0%
AATAAAGGTTTGTGTTTGGT+TGG	+	chr8_3:57016734-57016753	Msa1297090:CDS	30.0%
ATAAAGGTTTGTGTTTGGTT+GGG	+	chr8_3:57016735-57016754	Msa1297090:CDS	30.0%
GGATGATATTGAAATTAACG+AGG	+	chr8_3:57016910-57016929	Msa1297090:CDS	30.0%
ATGAAAATAACGATGGGAAA+AGG	+	chr8_3:57016942-57016961	Msa1297090:CDS	30.0%
AAAGGAAAAAGACGAGTAAA+CGG	+	chr8_3:57016960-57016979	Msa1297090:CDS	30.0%
ATGATATGACAATACACCAT+TGG	-	chr8_3:57017108-57017127	None:intergenic	30.0%
AAAATTTGAAGGGCTTCTTT+CGG	-	chr8_3:57017883-57017902	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	57016391	57021414	57016391	ID=Msa1297090;Name=Msa1297090
chr8_3	mRNA	57016391	57021414	57016391	ID=Msa1297090-mRNA-1;Parent=Msa1297090;Name=Msa1297090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=37\|1\|1\|1\|1\|1\|9\|186\|875
chr8_3	exon	57016391	57017017	57016391	ID=Msa1297090-mRNA-1:exon:16345;Parent=Msa1297090-mRNA-1
chr8_3	exon	57017277	57017468	57017277	ID=Msa1297090-mRNA-1:exon:16346;Parent=Msa1297090-mRNA-1
chr8_3	exon	57017834	57017915	57017834	ID=Msa1297090-mRNA-1:exon:16347;Parent=Msa1297090-mRNA-1
chr8_3	exon	57018009	57018197	57018009	ID=Msa1297090-mRNA-1:exon:16348;Parent=Msa1297090-mRNA-1
chr8_3	exon	57018297	57018410	57018297	ID=Msa1297090-mRNA-1:exon:16349;Parent=Msa1297090-mRNA-1
chr8_3	exon	57018846	57018939	57018846	ID=Msa1297090-mRNA-1:exon:16350;Parent=Msa1297090-mRNA-1
chr8_3	exon	57019021	57019178	57019021	ID=Msa1297090-mRNA-1:exon:16351;Parent=Msa1297090-mRNA-1
chr8_3	exon	57019525	57019929	57019525	ID=Msa1297090-mRNA-1:exon:16352;Parent=Msa1297090-mRNA-1
chr8_3	exon	57020425	57021414	57020425	ID=Msa1297090-mRNA-1:exon:16353;Parent=Msa1297090-mRNA-1
chr8_3	five_prime_UTR	57016391	57016427	57016391	ID=Msa1297090-mRNA-1:five_prime_utr;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57016428	57017017	57016428	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57017277	57017468	57017277	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57017834	57017915	57017834	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57018009	57018197	57018009	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57018297	57018410	57018297	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57018846	57018939	57018846	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57019021	57019178	57019021	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57019525	57019929	57019525	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	CDS	57020425	57021228	57020425	ID=Msa1297090-mRNA-1:cds;Parent=Msa1297090-mRNA-1
chr8_3	three_prime_UTR	57021229	57021414	57021229	ID=Msa1297090-mRNA-1:three_prime_utr;Parent=Msa1297090-mRNA-1

Gene Sequence

>Msa1297090

ATGGAAGCTCTGCACATGATACAGGGACACACACTCCCACTTCGTCCCTTATCACAATTCCAACCAGACACCGACAAAATTCGACGCAACCTTATTCAAAAAGGTGTCACTCCTACACCTAAAATCATTCACACTCTCCGCAAGAAACAAATCCAAAAACACAACCGAAAACTCAATCAACAAAACCAACTAAACCCGCCACTCTCAAATTCTCAAAAACAAACGTTAGAGGAAGAACAACACTTTCAGGAACTGAAACATGAGTACAAACAATTCACACAAAATTTGGAGGAAAATGAAGGAGGGAATAAAGGTTTGTGTTTGGTTGGGAAGCCATGGGAAGGGGTTGAAAAAGTTGAGTTTTTGGAGAGAATTAAGGTGAATAATGAGCACAGAGGAGAGAAACTTAAGAGGGAGAGTTTGATTGAGTTGAAGGAAATGTTTCATAAGAGAAAAATGGATGAATTGAAATGGGTTTTTGAGGATGATATTGAAATTAACGAGGTTTGGTTCGATGAAAATAACGATGGGAAAAGGAAAAAGACGAGTAAACGGAGTGAGGTTCAGGTTGTGAGGTTTCTTGTTGATAGGTTGTGTGATAAGGAATTTGGGGCTAAGGATTGGAAATTTTCGAGGTTGATGAAGCTGTCTGGATTGTCTTTCACAGAGGGTCAGTTGATGATGATTATTGAAATGCTTGGTGTTAAACGTTGTTGGAAGCAAGCTCTATCTGTGGTTCAATGGGTGTACAATTCTAAGGATCACAGAAAGTTTCAAAGCAGGTTTGTATACACAAAACTTCTTGCAGTTCTTGGGAAGGCAAGAAGGCCGAAAGAAGCCCTTCAAATTTTCAATATGATGCTTGGAAATATTCGTGTATATCCTGATATGGCTGCATATCACAGCATTGCTGTTACACTTGGTCAAGCTGGTCTTCTGAAAGAGTTGCTGAATATCGTGGAATGCATGAGGCAGAAACCTGAAACGTTAAAATATATGTATCGCAAGAACTGGGATCCAACTCTTGAACCTGATGTGGTTATATATAATGCCGTACTTAATGCTTGTGTTCCATCAAAGCAGTGGAAAGGTGTGTCATGGGTTTTTCAGCAAATGAGGAAAAGTAGTCTGAAACCTAACAGAGCAACTTATGGACTTGCAATGGAGGTAATGCTGCAATCGGGCAACTACAACCTTGTCCATGAGTTATTTGAAAAGATGCAGAGAAGTGGTGAAGTTCCAGAAGCCCTTACATACAAAGTGTTGGTGAGAACTTTCTGGAAGGAAGGTAAAGTTGACGAAGCGGTGAAAGCTGTCAGGGACATGGAAAGAAGAGGCGTTATGGGAACAGCCAGTGTTTATTATGAGCTAGCCTGTTGCCTTTGCAACTGTGGGAGATGGCAAGATGCTACTCTGGAGGTTGAGAAGATAAAAAGACTTCCTCATGCTAGACCTTTGGAGGTTACTTTCACTGGCATGATTAGGTCATCCATGGATGGTGGGCACATTGATGATTGCATATGTATATTTGAATATATGCAAGATCATTGTGCTCCTAATGTAGGGACTGTAAATACCATGCTGAAAGTTTACAGCCAGAATGACATGTTTTCTACAGCTAAAGTTTTATTCGAGGAAGTTAAGGTTGCAAAGTCAGATTTGCGACCAGATGCATACACATACAACTTGATGTTGGGAGCCTCTTCCTGTGCACACCAGTGGGAATACTTTGAGCATGTGTACAAAGAGATGATTCTCTCGGGTTATCATTTGGATCAAAATAAACACTTGCCATTACTTGTTAAAGCTTCAAGGGCTGGCAAGTTGCATTTACTGGAGCATGCATTTGACATGGTTCTTGAAGCTGGAGAAATCCCTCACCATCTTTTCTTTTTTGAATTGGTGATTCAAGCTATAGCTCGACATAATTACGAGCGAGCCATCATCTTACTCAGCACCATGGCTCATGCGCCATACCGAGTGACAGAAAAGCAATGGACAGAGCTGTTTAAAGAAAACGAAGACAGAATCAATCATGAAAATCTGAAGCGGTTGTTGGATGATCTTGGCAATTGTAATGTTGTATCAGAAGCAACCATCTCGAATTTATCAAGGTCATTGCATGATCTATGTGGATTGGGTTCATTGAGAAACATCTCAAGTATCATCCCTTTTAGAAGTGAAAATGTTGATTGTCTAAATGAGACAATTAATGGTGGTGAAAATGGAAAAGCGCCAAATTTTTCAGAGAGAATGATGATTGAAGGTGCTGAATCTGGGAATGATATTCTTTTTGGTGGTGATCAAGCTGAACCTGATACATTCACATTTAACGATGATCAAGTCGACAGAGTAAACAGTAATGATGTGGTGGTTTGCAGGCCACAAAACCGTGATATTGAAGATAAATCAAGTTTTTGCGTTGATAGACCGGAATTTCTTGATCGTCCGACACTTGACAAGTCTTTGGATGATTCGGAGGATGAGCTATCGGATGATGAAAGCTATGAAGACGATGATGATGAAGAAGTGATTGATAAGCCTTCAGCATATCAAATATTGGAAGCGTGGAAGAATATGAGAGAGGAGGATAAGAGTTTGTTACACTCTGAAATTGATTGTGGCTAG

Protein sequence

>Msa1297090

MEALHMIQGHTLPLRPLSQFQPDTDKIRRNLIQKGVTPTPKIIHTLRKKQIQKHNRKLNQQNQLNPPLSNSQKQTLEEEQHFQELKHEYKQFTQNLEENEGGNKGLCLVGKPWEGVEKVEFLERIKVNNEHRGEKLKRESLIELKEMFHKRKMDELKWVFEDDIEINEVWFDENNDGKRKKTSKRSEVQVVRFLVDRLCDKEFGAKDWKFSRLMKLSGLSFTEGQLMMIIEMLGVKRCWKQALSVVQWVYNSKDHRKFQSRFVYTKLLAVLGKARRPKEALQIFNMMLGNIRVYPDMAAYHSIAVTLGQAGLLKELLNIVECMRQKPETLKYMYRKNWDPTLEPDVVIYNAVLNACVPSKQWKGVSWVFQQMRKSSLKPNRATYGLAMEVMLQSGNYNLVHELFEKMQRSGEVPEALTYKVLVRTFWKEGKVDEAVKAVRDMERRGVMGTASVYYELACCLCNCGRWQDATLEVEKIKRLPHARPLEVTFTGMIRSSMDGGHIDDCICIFEYMQDHCAPNVGTVNTMLKVYSQNDMFSTAKVLFEEVKVAKSDLRPDAYTYNLMLGASSCAHQWEYFEHVYKEMILSGYHLDQNKHLPLLVKASRAGKLHLLEHAFDMVLEAGEIPHHLFFFELVIQAIARHNYERAIILLSTMAHAPYRVTEKQWTELFKENEDRINHENLKRLLDDLGNCNVVSEATISNLSRSLHDLCGLGSLRNISSIIPFRSENVDCLNETINGGENGKAPNFSERMMIEGAESGNDILFGGDQAEPDTFTFNDDQVDRVNSNDVVVCRPQNRDIEDKSSFCVDRPEFLDRPTLDKSLDDSEDELSDDESYEDDDDEEVIDKPSAYQILEAWKNMREEDKSLLHSEIDCG*