AlfalfaGEDB | Msa1289280

M. sativa cultivar zhongmu-4 / Msa1289280

KEGG: -
GO: -
PFAM: PF00931.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289280	XP_003628577.1	86.792	371	45	2	240	608	32	400	0.0	648
Msa1289280	XP_003628577.1	91.406	256	22	0	1	256	146	401	7.61e-144	473
Msa1289280	XP_003628577.1	92.834	307	22	0	609	915	161	467	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289280	sp\|V9M398\|RUN1_VITRO	37.135	377	221	6	239	608	41	408	2.22e-65	243
Msa1289280	sp\|V9M398\|RUN1_VITRO	38.608	316	189	4	600	915	162	472	3.52e-55	212
Msa1289280	sp\|V9M398\|RUN1_VITRO	36.709	237	148	2	17	253	172	406	9.45e-38	157

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289280	G7LDU5	86.792	371	45	2	240	608	32	400	0.0	648
Msa1289280	G7LDU5	91.406	256	22	0	1	256	146	401	3.63e-144	473
Msa1289280	G7LDU5	92.834	307	22	0	609	915	161	467	0.0	585

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004880	Msa1289280	0.829990	3.778886e-55	-8.615850e-47
Msa0007080	Msa1289280	0.824453	8.004915e-54	-8.615850e-47
Msa0012440	Msa1289280	0.816146	6.426075e-52	-8.615850e-47
Msa0017510	Msa1289280	0.862567	4.625202e-64	-8.615850e-47
Msa0028640	Msa1289280	0.800725	1.259742e-48	-8.615850e-47
Msa0029910	Msa1289280	0.821644	3.618182e-53	-8.615850e-47
Msa0032500	Msa1289280	0.807358	5.255988e-50	-8.615850e-47
Msa0036430	Msa1289280	0.810870	9.297124e-51	-8.615850e-47
Msa0037700	Msa1289280	0.815215	1.036195e-51	-8.615850e-47
Msa0040450	Msa1289280	0.810479	1.129167e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289280	MtrunA17_Chr8g0363851	92.580	283	21	0	633	915	1	283	6.31e-175	540
Msa1289280	MtrunA17_Chr8g0363851	91.204	216	19	0	393	608	1	216	2.12e-123	403
Msa1289280	MtrunA17_Chr8g0363851	90.783	217	20	0	40	256	1	217	1.22e-122	401
Msa1289280	MtrunA17_Chr6g0454931	36.681	458	250	9	185	610	13	462	8.77e-83	284
Msa1289280	MtrunA17_Chr6g0454931	39.776	357	203	6	561	915	179	525	3.69e-68	243
Msa1289280	MtrunA17_Chr6g0454931	41.221	262	146	5	3	262	210	465	3.09e-52	197
Msa1289280	MtrunA17_Chr4g0009141	40.642	374	207	6	247	612	548	914	6.70e-81	287
Msa1289280	MtrunA17_Chr4g0009141	42.089	316	173	7	603	914	665	974	6.03e-67	244
Msa1289280	MtrunA17_Chr4g0009141	41.569	255	140	5	1	252	659	907	1.16e-52	201
Msa1289280	MtrunA17_Chr4g0009141	36.525	282	168	7	638	912	198	475	1.84e-41	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1289280	AT1G27170.2	45.924	368	185	6	253	614	43	402	2.14e-98	337
Msa1289280	AT1G27170.2	45.963	322	165	3	600	915	145	463	5.08e-86	301
Msa1289280	AT1G27170.2	47.200	250	126	3	4	252	149	393	5.14e-63	233
Msa1289280	AT1G27170.1	46.341	369	184	5	253	614	41	402	4.35e-97	333
Msa1289280	AT1G27170.1	47.231	307	158	2	610	915	160	463	5.48e-86	301
Msa1289280	AT1G27170.1	46.800	250	127	3	4	252	149	393	2.25e-62	231
Msa1289280	AT1G27180.5	42.010	388	206	9	243	614	30	414	8.16e-84	295
Msa1289280	AT1G27180.5	44.291	289	153	6	630	915	189	472	1.73e-68	249
Msa1289280	AT1G27180.5	43.172	227	123	4	37	260	189	412	1.05e-49	191
Msa1289280	AT1G27180.8	42.010	388	206	9	243	614	30	414	8.16e-84	295

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Find 184 sgRNAs with CRISPR-Local

Find 611 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAATGGTTTCATGA+AGG	0.605469	8_3:-43133718	Msa1289280:CDS
AAAAGGGAATGGTTTCATGA+AGG	0.605469	8_3:-43136841	Msa1289280:CDS
AAAAGGGAATGGTTTCATGA+AGG	0.605469	8_3:-43142064	Msa1289280:CDS
AAACCAAATTGTGTCTCTTA+CGG	0.392984	8_3:-43133533	Msa1289280:CDS
AAACCTTGACATTGTTGGAT+TGG	0.430833	8_3:+43134049	None:intergenic
AAACCTTGACATTGTTGGAT+TGG	0.430833	8_3:+43137172	None:intergenic
AAACCTTGACATTGTTGGAT+TGG	0.430833	8_3:+43142395	None:intergenic
AAAGATCTTACTTCTCAAGA+AGG	0.486471	8_3:-43133868	Msa1289280:CDS
AAAGATCTTACTTCTCAAGA+AGG	0.486471	8_3:-43142214	Msa1289280:CDS
AAAGATCTTGCTTCTCAAGA+AGG	0.453048	8_3:-43136991	Msa1289280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTTGCATCTAAAGAAGA+TGG	-	chr8_3:43134055-43134074	Msa1289280:CDS	30.0%
AAAGATCTTACTTCTCAAGA+AGG	-	chr8_3:43134106-43134125	Msa1289280:CDS	30.0%
GACATCACTGATAAAACTTT+GGG	+	chr8_3:43134134-43134153	None:intergenic	30.0%
TGACATCACTGATAAAACTT+TGG	+	chr8_3:43134135-43134154	None:intergenic	30.0%
TTGATGCTTTGATTGGTAAA+AGG	-	chr8_3:43134239-43134258	Msa1289280:intron	30.0%
TGATGCTTTGATTGGTAAAA+GGG	-	chr8_3:43134240-43134259	Msa1289280:intron	30.0%
ATGGTAACTGAATAACTCTA+AGG	+	chr8_3:43134377-43134396	None:intergenic	30.0%
TAATCTTTCATGGATGATGA+GGG	+	chr8_3:43134568-43134587	None:intergenic	30.0%
TTAATCTTTCATGGATGATG+AGG	+	chr8_3:43134569-43134588	None:intergenic	30.0%
ATTCAAACTAGTTAAATGGC+AGG	-	chr8_3:43134843-43134862	Msa1289280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	43133291	43143051	43133291	ID=Msa1289280;Name=Msa1289280
chr8_3	mRNA	43133291	43143051	43133291	ID=Msa1289280-mRNA-1;Parent=Msa1289280;Name=Msa1289280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|0.8\|1\|0.8\|5\|0\|915
chr8_3	exon	43143008	43143051	43143008	ID=Msa1289280-mRNA-1:exon:11795;Parent=Msa1289280-mRNA-1
chr8_3	exon	43141849	43142558	43141849	ID=Msa1289280-mRNA-1:exon:11794;Parent=Msa1289280-mRNA-1
chr8_3	exon	43139261	43139609	43139261	ID=Msa1289280-mRNA-1:exon:11793;Parent=Msa1289280-mRNA-1
chr8_3	exon	43136616	43137335	43136616	ID=Msa1289280-mRNA-1:exon:11792;Parent=Msa1289280-mRNA-1
chr8_3	exon	43133291	43134212	43133291	ID=Msa1289280-mRNA-1:exon:11791;Parent=Msa1289280-mRNA-1
chr8_3	CDS	43143008	43143051	43143008	ID=Msa1289280-mRNA-1:cds;Parent=Msa1289280-mRNA-1
chr8_3	CDS	43141849	43142558	43141849	ID=Msa1289280-mRNA-1:cds;Parent=Msa1289280-mRNA-1
chr8_3	CDS	43139261	43139609	43139261	ID=Msa1289280-mRNA-1:cds;Parent=Msa1289280-mRNA-1
chr8_3	CDS	43136616	43137335	43136616	ID=Msa1289280-mRNA-1:cds;Parent=Msa1289280-mRNA-1
chr8_3	CDS	43133291	43134212	43133291	ID=Msa1289280-mRNA-1:cds;Parent=Msa1289280-mRNA-1

Gene Sequence

>Msa1289280

ATGCTTAAAATAGGTGGTCTTGCTGGCTTTGTTTTCAATTCTAGTGATGATGGCAAGCATGAGAATTTGATACGTCGTTTGGTGAAAAGGGTTTTGAAGGGGTTGAGTAATACTCCAATGGTTGTGTCTGAGTTTGCTGTGGGGATCAATGAACGTGTTGAGAAGGTGATGGATTTGTTACAACTCCAATCCAACAATGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGTGTTGGCAAGACAACCCTTGCTAAGGCTCTCTTCAATAGTCTTGTTGGTCGTTTCGAGCGCAGATGCTTCATATCAAATGTGAGACAATTTGCATCTAAAGAAGATGGTTTGGTTTCTATTCAAAGCAATATAATTAAAGATCTTACTTCTCAAGAAGGAACCCAAAGTTTTATCAGTGATGTCAATGCTGGTATTTCTTCTATCAGAAGAATAGTTCGTGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATCATGTTAATCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTCATGAAGGAAGCTGTATAATAATTACAACAAGAGATACAACTGTTTTGCCTGAAAAACATGTCAATAAGCTGTTTGAAGTTACAGAATTGTATCCTAAAGAAGCCTTAGAGTTATTCAGTTACCATGCATTGAGGAAAAAGGATCCTCCACCAGACTTTCTGAGTTGTTCAGAGCAAATTGTGTCTCTTACGGGAAGAATGCCATTGGCTTTGGAAGTGTTCGGCGTTCGTGCTTTCATGGATGATGAGGGTTTGGACCGTGGGGACCACATAGCTACCACTCTTCTTGAAGCCATTGATGACTCTACTGCTTCCATTGTTAGCATTTCACCTAACTATGCTGATTCTCATTGGTGTCTTGATGAACTCAATAGGATTTGTGATCTTCAAAGGCTTATTATTCCTGTTTTCTATAAGGTTGATCCATCTCATGTCAGAAAACAAAAGGGTCCTTTTAAACAAGGGTTTAAGGATCTTCAAAACAGGTTTAGGGAAGATAAAATTTTGAAGTGGAGACGTTTTATGCTTAAAATAGGTGGTCTTGCTGGCTTTGTTTTCAATTCTATTTCTAGTGATGATGGCGAGCATGAGAATCTGATATGTCGTTTGGTGAAAAGGGTTTTGAAGGAGTTGAGTAATACTCCAATGGTTGTGTCTGAGTTTGCTGTGGGGATCAATGAACGTGTTGAGAAGGTGATGGATTTGTTACAACTCCAATCCAACAATGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGTGTTGGCAAGACAGCCCTTGCTAAGGCTCTCTTCAATAGTCTTGTTGGTCGTTTCGAGCGCAGATGCTTCATATCAAATGTGAGACAATTTGCATCTAAAGAAGATGGTTTGGTTTCTATTCAAAGCAATATAATTAAAGATCTTGCTTCTCAAGAAGGAACTCAAAGTTTTATCAGTGATGTCAATGCTGGTATTTCTTCTATCAGAAGAATAGTTCGTGAAAATCGAGTTCTGCTAGTGTTGGATGATGATGATCATGTAAATCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTCATGAAGGAAGCTGTATAATAATTACAACAAGAGATACAACTGTTTTGCCTGAAAAACATGTCAATAAGTTGTTTGAAGTTACAGAATTGTATCCTAAAGAAGCCTTAGAGTTATTCAGTTACCATGCATTGAGGAAAAAGGATCCTCCACCAGACTTTCTGAGTTGTTCAGAGCAAATTGTGTCTCTTACGGGAAGAATGCCATTGGCTTTGGAAGTGTTCGGTTGCTTTCTTGATGATGGCGAGCATGAGAATCTGATACGTCGTTTGGTGAAAAGGGTTTTGAAGGAGTTGAGTAATACTCCAATGGTTGTGTCTGAGTTTGCTGTGGGGATCAATGAACGTGTTGAGAAGGTGATGGATTTGTTACAACTCCAATCCAACAATGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGTGTTGGCAAGACAACCCTTGCTAAGGCTCTCTTCAATAGTCTTGTTGGTCGTTTCGAGCGCAGATGCTTCATATCAAATGTGAGACAATTTGCATCTAAAGAAGATGGTTTGGTTTCTATTCAAAGCAATATAATTAAAGATCTTACTTCTCAAGAAGGAACCCAAAGTTTTATCAGTGATGTCAATGCTGGTATTTCTTCTATCAGAAGAATAGTTCGTGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATCATGTTAATCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTCATGAAGGAAGCTGTATAATAATTACAACAAGAGATACAACTGTTTTACCTGAAAAACATGTCAATAAGCTGTTTGAAGTTACAGAATTGTCTCCTGAAGAAGCCCTAGAGTTATTCAGTTACCATGCATTGAGGAAAAAGGATCCTCCACCAGACTTCCAGAGTTGTTCAAACCAAATTGTGTCTCTTACGGGAAGAATGCCATTGGCTTTGGAAGTGTTCGGTTGCTTTCTGTTTGGGAAGAGAAGGGTGGAAGAATGGGAGGATGTTGTTGAGAAGCTGAAAACAATTCGCCCCGGGAATCTTCATGATGTGTTGAAGATAAGTTATGATGGGTTGGACGAACAAGAAAAGTGTATATTCCTTGATATTGCATGTTTGTTTGTTCAGATGGGCATGAAGCGTGACGATGTGATTGATGTATTGAGAGGCTGT

Protein sequence

>Msa1289280

MLKIGGLAGFVFNSSDDGKHENLIRRLVKRVLKGLSNTPMVVSEFAVGINERVEKVMDLLQLQSNNVKVLGLYGMGGVGKTTLAKALFNSLVGRFERRCFISNVRQFASKEDGLVSIQSNIIKDLTSQEGTQSFISDVNAGISSIRRIVRENRVLLVLDDVDHVNQLDALIGKREWFHEGSCIIITTRDTTVLPEKHVNKLFEVTELYPKEALELFSYHALRKKDPPPDFLSCSEQIVSLTGRMPLALEVFGVRAFMDDEGLDRGDHIATTLLEAIDDSTASIVSISPNYADSHWCLDELNRICDLQRLIIPVFYKVDPSHVRKQKGPFKQGFKDLQNRFREDKILKWRRFMLKIGGLAGFVFNSISSDDGEHENLICRLVKRVLKELSNTPMVVSEFAVGINERVEKVMDLLQLQSNNVKVLGLYGMGGVGKTALAKALFNSLVGRFERRCFISNVRQFASKEDGLVSIQSNIIKDLASQEGTQSFISDVNAGISSIRRIVRENRVLLVLDDDDHVNQLDALIGKREWFHEGSCIIITTRDTTVLPEKHVNKLFEVTELYPKEALELFSYHALRKKDPPPDFLSCSEQIVSLTGRMPLALEVFGCFLDDGEHENLIRRLVKRVLKELSNTPMVVSEFAVGINERVEKVMDLLQLQSNNVKVLGLYGMGGVGKTTLAKALFNSLVGRFERRCFISNVRQFASKEDGLVSIQSNIIKDLTSQEGTQSFISDVNAGISSIRRIVRENRVLLVLDDVDHVNQLDALIGKREWFHEGSCIIITTRDTTVLPEKHVNKLFEVTELSPEEALELFSYHALRKKDPPPDFQSCSNQIVSLTGRMPLALEVFGCFLFGKRRVEEWEDVVEKLKTIRPGNLHDVLKISYDGLDEQEKCIFLDIACLFVQMGMKRDDVIDVLRGC