Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034930 | XP_024640215.1 | 95.983 | 722 | 29 | 0 | 1 | 722 | 1 | 722 | 0.0 | 1437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034930 | Msa0040190 | 0.802184 | 6.329239e-49 | -8.615850e-47 |
| Msa0034930 | Msa0090350 | 0.803452 | 3.462554e-49 | -8.615850e-47 |
| Msa0034930 | Msa0134550 | 0.802157 | 6.410664e-49 | -8.615850e-47 |
| Msa0034930 | Msa0181290 | 0.800370 | 1.487827e-48 | -8.615850e-47 |
| Msa0034930 | Msa0198140 | 0.804364 | 2.237737e-49 | -8.615850e-47 |
| Msa0034930 | Msa0198220 | 0.802382 | 5.761651e-49 | -8.615850e-47 |
| Msa0034930 | Msa0226580 | 0.825062 | 5.753581e-54 | -8.615850e-47 |
| Msa0034930 | Msa0278340 | 0.801678 | 8.038451e-49 | -8.615850e-47 |
| Msa0034930 | Msa0370350 | 0.805279 | 1.441345e-49 | -8.615850e-47 |
| Msa0034930 | Msa0379720 | 0.806862 | 6.693857e-50 | -8.615850e-47 |
| Msa0034930 | Msa0429100 | 0.816943 | 4.261805e-52 | -8.615850e-47 |
| Msa0034930 | Msa0429130 | 0.806621 | 7.526626e-50 | -8.615850e-47 |
| Msa0034930 | Msa0451370 | 0.813961 | 1.963050e-51 | -8.615850e-47 |
| Msa0034930 | Msa0475830 | 0.806247 | 9.025629e-50 | -8.615850e-47 |
| Msa0034930 | Msa0486850 | 0.809024 | 2.321386e-50 | -8.615850e-47 |
| Msa0034930 | Msa0540120 | 0.807777 | 4.283604e-50 | -8.615850e-47 |
| Msa0034930 | Msa0578890 | 0.802489 | 5.476184e-49 | -8.615850e-47 |
| Msa0034930 | Msa0610850 | 0.805469 | 1.314832e-49 | -8.615850e-47 |
| Msa0034930 | Msa0747660 | 0.817690 | 2.892924e-52 | -8.615850e-47 |
| Msa0034930 | Msa1211100 | 0.821536 | 3.831626e-53 | -8.615850e-47 |
| Msa0034930 | Msa1211120 | 0.819367 | 1.205699e-52 | -8.615850e-47 |
| Msa0034930 | Msa1216700 | 0.817720 | 2.848537e-52 | -8.615850e-47 |
| Msa0034930 | Msa1245300 | 0.821239 | 4.487998e-53 | -8.615850e-47 |
| Msa0034930 | Msa1262740 | 0.815507 | 8.922241e-52 | -8.615850e-47 |
| Msa0034930 | Msa1263610 | 0.800498 | 1.401092e-48 | -8.615850e-47 |
| Msa0034930 | Msa1329660 | 0.810627 | 1.048969e-50 | -8.615850e-47 |
| Msa0034930 | Msa1398310 | 0.811099 | 8.294464e-51 | -8.615850e-47 |
| Msa0034930 | Msa1433380 | 0.810990 | 8.755519e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034930 | MtrunA17_Chr1g0197231 | 95.983 | 722 | 29 | 0 | 1 | 722 | 1 | 722 | 0.0 | 1437 |
| Msa0034930 | MtrunA17_Chr1g0197221 | 71.463 | 417 | 105 | 5 | 1 | 414 | 1 | 406 | 0.0 | 595 |
| Msa0034930 | MtrunA17_Chr8g0344061 | 41.349 | 786 | 373 | 16 | 1 | 719 | 1 | 765 | 0.0 | 568 |
| Msa0034930 | MtrunA17_Chr1g0197211 | 86.475 | 244 | 32 | 1 | 479 | 722 | 2 | 244 | 1.93e-152 | 442 |
| Msa0034930 | MtrunA17_Chr2g0303501 | 31.662 | 698 | 386 | 20 | 30 | 711 | 14 | 636 | 5.56e-96 | 310 |
| Msa0034930 | MtrunA17_Chr1g0154771 | 34.495 | 574 | 270 | 12 | 30 | 539 | 16 | 547 | 7.23e-88 | 286 |
| Msa0034930 | MtrunA17_Chr1g0154761 | 55.696 | 158 | 67 | 1 | 565 | 719 | 1 | 158 | 1.33e-52 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034930 | AT5G45540.1 | 34.979 | 466 | 251 | 13 | 24 | 459 | 7 | 450 | 9.89e-74 | 255 |
| Msa0034930 | AT5G45540.1 | 40.614 | 293 | 144 | 6 | 450 | 719 | 514 | 799 | 4.13e-57 | 208 |
| Msa0034930 | AT5G45470.1 | 36.000 | 425 | 246 | 11 | 30 | 442 | 13 | 423 | 8.62e-66 | 234 |
| Msa0034930 | AT5G45470.1 | 43.478 | 276 | 139 | 7 | 456 | 719 | 592 | 862 | 1.03e-58 | 214 |
| Msa0034930 | AT5G45530.1 | 34.685 | 444 | 239 | 11 | 24 | 435 | 6 | 430 | 1.01e-64 | 230 |
| Msa0034930 | AT5G45530.1 | 46.850 | 254 | 128 | 4 | 471 | 719 | 542 | 793 | 8.59e-64 | 227 |
| Msa0034930 | AT5G45480.1 | 37.027 | 370 | 214 | 5 | 30 | 395 | 13 | 367 | 1.26e-64 | 231 |
| Msa0034930 | AT5G45480.1 | 39.711 | 277 | 145 | 6 | 459 | 719 | 603 | 873 | 1.59e-52 | 196 |
| Msa0034930 | AT5G45460.1 | 35.597 | 427 | 247 | 13 | 30 | 443 | 13 | 424 | 3.43e-64 | 227 |
| Msa0034930 | AT4G19090.1 | 45.876 | 194 | 96 | 5 | 517 | 704 | 559 | 749 | 1.52e-43 | 168 |
| Msa0034930 | AT4G19090.1 | 34.812 | 293 | 159 | 9 | 101 | 392 | 82 | 343 | 7.62e-33 | 135 |
| Msa0034930 | AT4G19080.1 | 33.766 | 308 | 181 | 8 | 429 | 722 | 21 | 319 | 2.79e-43 | 159 |
Find 146 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCCCATTTCCTTTCTT+TGG | 0.118167 | 1_1:+62898222 | None:intergenic |
| TGTATTGGAACTTCGGATTT+TGG | 0.203609 | 1_1:-62900087 | Msa0034930:CDS |
| CTTATGATCTTTAGTGTCTT+TGG | 0.208303 | 1_1:+62899920 | None:intergenic |
| TTGGTTCTCCCTTGAGTATT+AGG | 0.249278 | 1_1:+62899483 | None:intergenic |
| AAAGGCTAAAATTGTTGATA+TGG | 0.257398 | 1_1:-62899995 | Msa0034930:CDS |
| CATAAACTGCAACTGCTAAT+TGG | 0.259955 | 1_1:+62899763 | None:intergenic |
| CCATTTCTCCTTGTGCATCT+TGG | 0.274921 | 1_1:-62899861 | Msa0034930:CDS |
| TGAAACTACTCCCTTAGTTT+TGG | 0.276491 | 1_1:-62899508 | Msa0034930:CDS |
| AATGATGTAATATTGAAATT+TGG | 0.290303 | 1_1:-62897915 | Msa0034930:three_prime_UTR |
| AGTTTCATTAATTTCATCTA+AGG | 0.293820 | 1_1:+62899524 | None:intergenic |
| TCACGTAAAGCTTGACTATC+TGG | 0.301445 | 1_1:+62899441 | None:intergenic |
| CTAACCAGGTCTGGAAAATA+AGG | 0.304646 | 1_1:+62897786 | None:intergenic |
| TCCATGAATTTAGCATAGTT+TGG | 0.319706 | 1_1:+62899585 | None:intergenic |
| ATTATTCCTGCCACGACAAT+AGG | 0.320930 | 1_1:+62899693 | None:intergenic |
| CTGATTGATGTTTAAAGCTC+TGG | 0.322147 | 1_1:-62897741 | None:intergenic |
| TTGCAGTTTATGTTGTTTAT+CGG | 0.324974 | 1_1:-62899752 | Msa0034930:CDS |
| TTCTAAAGACTGTAGTGATT+TGG | 0.325018 | 1_1:+62898261 | None:intergenic |
| GCATAGTTTGGTCCTGGGTC+TGG | 0.329432 | 1_1:+62899597 | None:intergenic |
| AGACACCAACTTCGTAATTA+TGG | 0.335596 | 1_1:-62899895 | Msa0034930:CDS |
| CTTCAAGTTGGGTAATGAAT+TGG | 0.339080 | 1_1:-62899035 | Msa0034930:CDS |
| GGAAGCATATAGTTGATAAA+AGG | 0.341675 | 1_1:-62900013 | Msa0034930:CDS |
| CCTGACTGAGCAATGCCTTC+AGG | 0.350850 | 1_1:+62900379 | None:intergenic |
| TTGGATTGCTACCGTTGCTC+TGG | 0.351013 | 1_1:-62899952 | Msa0034930:CDS |
| TCAAACTCTCACACACTATC+AGG | 0.358742 | 1_1:-62898945 | Msa0034930:CDS |
| GTGGCAGGAATAATCAAATA+TGG | 0.362119 | 1_1:-62899684 | Msa0034930:CDS |
| ATTGGTCCAAAGAAAGGAAA+TGG | 0.365129 | 1_1:-62898228 | Msa0034930:CDS |
| TGACATTAACCGGAGCATTA+AGG | 0.367899 | 1_1:-62898647 | Msa0034930:CDS |
| TAAAGCTCTCATAAAATGTT+TGG | 0.372077 | 1_1:-62898024 | Msa0034930:exon |
| TCACTTATCTGTCAGCTGAT+TGG | 0.376601 | 1_1:-62899971 | Msa0034930:CDS |
| TCTGAATCCATCGCTGCTTC+CGG | 0.377026 | 1_1:+62899638 | None:intergenic |
| CAGAGGTACTTCAGTAAGAT+AGG | 0.378868 | 1_1:-62900405 | None:intergenic |
| TGAAGATGAGATCTGCAAAT+AGG | 0.383443 | 1_1:+62899388 | None:intergenic |
| GGGAAATGATAAGTCATGTT+TGG | 0.385745 | 1_1:-62898207 | Msa0034930:CDS |
| AGATTTCTAAAGGTCATGTA+AGG | 0.386149 | 1_1:-62898054 | Msa0034930:CDS |
| ACATATAATCCGACAACAAT+TGG | 0.387416 | 1_1:+62898506 | None:intergenic |
| CTTTAGAAACGGAGGAGAAT+TGG | 0.387914 | 1_1:-62898246 | Msa0034930:CDS |
| GTGAGTTGCTTACCCATGTC+TGG | 0.387983 | 1_1:-62898114 | Msa0034930:CDS |
| TTTGGTCCTGGGTCTGGAGG+AGG | 0.393596 | 1_1:+62899603 | None:intergenic |
| CCAGCTTAAGGATAAGTCTA+AGG | 0.393867 | 1_1:-62898755 | Msa0034930:CDS |
| TCAAATATGGTGAGAGGACT+TGG | 0.397112 | 1_1:-62899671 | Msa0034930:CDS |
| ACTTCGTAATTATGGCCATC+TGG | 0.404255 | 1_1:-62899887 | Msa0034930:CDS |
| ACCAAACTATGCTAAATTCA+TGG | 0.409018 | 1_1:-62899586 | Msa0034930:CDS |
| TTGATCAGAGTATTCTGCTT+TGG | 0.417447 | 1_1:-62898615 | Msa0034930:CDS |
| AATTTAGCATAGTTTGGTCC+TGG | 0.419818 | 1_1:+62899591 | None:intergenic |
| TTTAGAAATCTGAAATTGTT+CGG | 0.421250 | 1_1:+62898066 | None:intergenic |
| GAACAATTTCAGATTTCTAA+AGG | 0.421773 | 1_1:-62898064 | Msa0034930:CDS |
| TAGGAACGGTGATATACTTA+AGG | 0.424625 | 1_1:+62899712 | None:intergenic |
| ATAATGTTCGTGACATTAAC+CGG | 0.425191 | 1_1:-62898657 | Msa0034930:CDS |
| ATTCCACCATCAGAGGTTAA+AGG | 0.427849 | 1_1:-62898325 | Msa0034930:CDS |
| TAATAAACTCTAACCAGGTC+TGG | 0.428092 | 1_1:+62897777 | None:intergenic |
| CCAAGATGCACAAGGAGAAA+TGG | 0.430462 | 1_1:+62899861 | None:intergenic |
| TTTATGTTGTTTATCGGTCA+TGG | 0.437220 | 1_1:-62899746 | Msa0034930:CDS |
| TTTCTCCTTGTGCATCTTGG+TGG | 0.441469 | 1_1:-62899858 | Msa0034930:CDS |
| GTGATCAAGTTCTTAACAAA+TGG | 0.442018 | 1_1:-62898687 | Msa0034930:CDS |
| ACAAGTCTCTGAGGGATTGA+AGG | 0.445947 | 1_1:-62898791 | Msa0034930:CDS |
| CTATCACCTTTAACCTCTGA+TGG | 0.451500 | 1_1:+62898319 | None:intergenic |
| TGCAGCTTCAGACAATGTAT+AGG | 0.452872 | 1_1:-62897966 | Msa0034930:three_prime_UTR |
| CTTTCAAGCAGAATCTTATG+AGG | 0.460902 | 1_1:+62898896 | None:intergenic |
| CCTTAGACTTATCCTTAAGC+TGG | 0.465395 | 1_1:+62898755 | None:intergenic |
| TATCAACTATATGCTTCCTT+CGG | 0.466017 | 1_1:+62900018 | None:intergenic |
| GAGTAGGCAGTGATTGTGTC+AGG | 0.469509 | 1_1:+62899834 | None:intergenic |
| GGTAAGCAACTCACCACCTT+GGG | 0.470676 | 1_1:+62898123 | None:intergenic |
| TAATCACAATAGTCCAAGTC+TGG | 0.471180 | 1_1:-62900123 | Msa0034930:CDS |
| GGAAATGATAAGTCATGTTT+GGG | 0.473545 | 1_1:-62898206 | Msa0034930:CDS |
| GGCAAAAGAGTGGAATGTAT+TGG | 0.474136 | 1_1:-62900102 | Msa0034930:CDS |
| AGTATTAGGATCCAAAACTA+AGG | 0.474378 | 1_1:+62899497 | None:intergenic |
| TGTTAGTCTCTTCTTACAAA+TGG | 0.475048 | 1_1:-62900060 | Msa0034930:CDS |
| TCTGATCTGTCCTATTCCAT+TGG | 0.477040 | 1_1:+62898450 | None:intergenic |
| TTGGTCCTGGGTCTGGAGGA+GGG | 0.477210 | 1_1:+62899604 | None:intergenic |
| ACCGTTCCTATTGTCGTGGC+AGG | 0.480684 | 1_1:-62899699 | Msa0034930:CDS |
| CTGCGGTCCGGAAGCAGCGA+TGG | 0.489508 | 1_1:-62899645 | Msa0034930:CDS |
| CTGATCTGTCCTATTCCATT+GGG | 0.491016 | 1_1:+62898451 | None:intergenic |
| CTTCGTAATTATGGCCATCT+GGG | 0.491238 | 1_1:-62899886 | Msa0034930:CDS |
| ATCACTACAGTCTTTAGAAA+CGG | 0.493332 | 1_1:-62898257 | Msa0034930:CDS |
| CCTGAAGGCATTGCTCAGTC+AGG | 0.493980 | 1_1:-62900379 | Msa0034930:five_prime_UTR |
| TACTGCATGATAATGTATAA+TGG | 0.496848 | 1_1:-62897862 | Msa0034930:three_prime_UTR |
| AGCTCTCATAAAATGTTTGG+TGG | 0.501710 | 1_1:-62898021 | Msa0034930:exon |
| AGGAGAATTGGTCCAAAGAA+AGG | 0.502133 | 1_1:-62898234 | Msa0034930:CDS |
| GGCTGAGCAAGCATGAGAAT+CGG | 0.508218 | 1_1:-62899014 | Msa0034930:CDS |
| GATAGTCAAGCTTTACGTGA+TGG | 0.514058 | 1_1:-62899438 | Msa0034930:CDS |
| TGCAGTACCAAGTGGTACAT+AGG | 0.514214 | 1_1:+62897878 | None:intergenic |
| AAAGCAATTGAGGTTGAGCT+AGG | 0.514923 | 1_1:-62899303 | Msa0034930:CDS |
| ATTTAGCATAGTTTGGTCCT+GGG | 0.515262 | 1_1:+62899592 | None:intergenic |
| ATGATGAAGGAAACAAATAC+AGG | 0.516016 | 1_1:-62899137 | Msa0034930:CDS |
| GTAAAACATTATGCGCTCAC+AGG | 0.517452 | 1_1:-62898711 | Msa0034930:CDS |
| CATGTTGAAGTCCTCTACAT+TGG | 0.517905 | 1_1:+62898158 | None:intergenic |
| TTGGTCCAAAGAAAGGAAAT+GGG | 0.518215 | 1_1:-62898227 | Msa0034930:CDS |
| AGTGGAATGTATTGGAACTT+CGG | 0.523355 | 1_1:-62900094 | Msa0034930:CDS |
| AGGAACGGTGATATACTTAA+GGG | 0.529728 | 1_1:+62899713 | None:intergenic |
| ACTCTACATCCTTAATGCTC+CGG | 0.529939 | 1_1:+62898638 | None:intergenic |
| AGGACTTGGTCACTGCGGTC+CGG | 0.530660 | 1_1:-62899657 | Msa0034930:CDS |
| TGGATTGCTACCGTTGCTCT+GGG | 0.533936 | 1_1:-62899951 | Msa0034930:CDS |
| TAGTTTGGTCCTGGGTCTGG+AGG | 0.533953 | 1_1:+62899600 | None:intergenic |
| GGTGATATACTTAAGGGGAT+TGG | 0.537278 | 1_1:+62899719 | None:intergenic |
| GATGGCCATAATTACGAAGT+TGG | 0.546121 | 1_1:+62899890 | None:intergenic |
| AAGGAGAAATGGTGCCCAGA+TGG | 0.549704 | 1_1:+62899872 | None:intergenic |
| GTATATGAACTTGATGATGA+AGG | 0.550772 | 1_1:-62899150 | Msa0034930:CDS |
| TAAAACATTATGCGCTCACA+GGG | 0.552136 | 1_1:-62898710 | Msa0034930:CDS |
| CCGTATTGTTTGATGCGTGT+AGG | 0.558265 | 1_1:-62898288 | Msa0034930:CDS |
| GCAGTACCAAGTGGTACATA+GGG | 0.560596 | 1_1:+62897879 | None:intergenic |
| GAGCCATCAAAAGCCAGACA+TGG | 0.570538 | 1_1:+62898101 | None:intergenic |
| CCTACACGCATCAAACAATA+CGG | 0.570995 | 1_1:+62898288 | None:intergenic |
| TTGGTTGTCTTCAAGAGAGT+AGG | 0.573804 | 1_1:+62899818 | None:intergenic |
| GCATATGTCGTGGCCACAGT+TGG | 0.576298 | 1_1:+62899799 | None:intergenic |
| GTCCAAGTCTGGCAAAAGAG+TGG | 0.576783 | 1_1:-62900112 | Msa0034930:CDS |
| TACATTACTCACAAAATAGA+CGG | 0.581239 | 1_1:+62897937 | None:intergenic |
| GGGTAAGCAACTCACCACCT+TGG | 0.584499 | 1_1:+62898122 | None:intergenic |
| GCTCTCATAAAATGTTTGGT+GGG | 0.588558 | 1_1:-62898020 | Msa0034930:exon |
| AAGCAAGCAATGTTACTCGC+TGG | 0.589019 | 1_1:-62900294 | Msa0034930:intron |
| AGATCTGCAAATAGGCACTC+AGG | 0.594002 | 1_1:+62899396 | None:intergenic |
| ATTCTCCCTCCTCCAGACCC+AGG | 0.596606 | 1_1:-62899609 | Msa0034930:CDS |
| TGAAGACACGTGTGCAGAGG+TGG | 0.597472 | 1_1:-62898425 | Msa0034930:CDS |
| TTTGTTCCCTATGTACCACT+TGG | 0.602439 | 1_1:-62897885 | Msa0034930:three_prime_UTR |
| TACAGATATTCCACCATCAG+AGG | 0.605569 | 1_1:-62898332 | Msa0034930:CDS |
| AAAACAAAACAAGTCTCTGA+GGG | 0.610505 | 1_1:-62898799 | Msa0034930:CDS |
| AATGATAAGTCATGTTTGGG+TGG | 0.611175 | 1_1:-62898203 | Msa0034930:CDS |
| GGAAAGAATTCCCAGAGCAA+CGG | 0.617429 | 1_1:+62899941 | None:intergenic |
| CAAGCATGAGAATCGGAGAG+TGG | 0.617703 | 1_1:-62899007 | Msa0034930:CDS |
| TTTCAGGAAGATGCCGCGGT+AGG | 0.619037 | 1_1:+62899236 | None:intergenic |
| CAAATACAGGAATTATGACC+TGG | 0.626544 | 1_1:-62899124 | Msa0034930:CDS |
| GATTTCTAAAGGTCATGTAA+GGG | 0.628428 | 1_1:-62898053 | Msa0034930:CDS |
| TCACCTTTAACCTCTGATGG+TGG | 0.629266 | 1_1:+62898322 | None:intergenic |
| CATAACAAGTCATATAGCTG+TGG | 0.631148 | 1_1:-62900356 | Msa0034930:five_prime_UTR |
| GAATAATCAAATATGGTGAG+AGG | 0.632365 | 1_1:-62899677 | Msa0034930:CDS |
| GTATTAGGATCCAAAACTAA+GGG | 0.633824 | 1_1:+62899498 | None:intergenic |
| CAGTAAGATAGGAAACCTGA+AGG | 0.634792 | 1_1:-62900394 | Msa0034930:five_prime_UTR |
| AGACATAATAAACTCTAACC+AGG | 0.638731 | 1_1:+62897772 | None:intergenic |
| AGCCATCAAAAGCCAGACAT+GGG | 0.643731 | 1_1:+62898102 | None:intergenic |
| TCCTGCCACGACAATAGGAA+CGG | 0.646988 | 1_1:+62899698 | None:intergenic |
| ATTTGAAGACACGTGTGCAG+AGG | 0.648889 | 1_1:-62898428 | Msa0034930:CDS |
| CTCTTGAAGACAACCAACTG+TGG | 0.654311 | 1_1:-62899812 | Msa0034930:CDS |
| CATTATCATGCAGTACCAAG+TGG | 0.655183 | 1_1:+62897870 | None:intergenic |
| TATCACCGTTCCTATTGTCG+TGG | 0.655838 | 1_1:-62899703 | Msa0034930:CDS |
| CAGATTTCAGGAAGATGCCG+CGG | 0.656420 | 1_1:+62899232 | None:intergenic |
| CATGCTAAGCAACTCACCCA+AGG | 0.658311 | 1_1:-62898139 | Msa0034930:CDS |
| GGAACGGTGATATACTTAAG+GGG | 0.660207 | 1_1:+62899714 | None:intergenic |
| CAGGACCACCAAGATGCACA+AGG | 0.664529 | 1_1:+62899853 | None:intergenic |
| AAAGCACAAAAGTGATAACC+AGG | 0.668787 | 1_1:+62899106 | None:intergenic |
| AACTCTCACACACTATCAGG+TGG | 0.680578 | 1_1:-62898942 | Msa0034930:CDS |
| ACTACAGTCTTTAGAAACGG+AGG | 0.683348 | 1_1:-62898254 | Msa0034930:CDS |
| GTGATAACATATTCCTACCG+CGG | 0.686622 | 1_1:-62899249 | Msa0034930:CDS |
| CATGCTGCAAGCCAATGTAG+AGG | 0.690463 | 1_1:-62898169 | Msa0034930:CDS |
| AGTAATTCAAGCATATGTCG+TGG | 0.691047 | 1_1:+62899789 | None:intergenic |
| GCTAAGCAACTCACCCAAGG+TGG | 0.695605 | 1_1:-62898136 | Msa0034930:CDS |
| GTGAGAGGACTTGGTCACTG+CGG | 0.730382 | 1_1:-62899662 | Msa0034930:CDS |
| AAAACATTATGCGCTCACAG+GGG | 0.800627 | 1_1:-62898709 | Msa0034930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGATATTTTATATACAA+AGG | - | chr1_1:62898862-62898881 | Msa0034930:CDS | 10.0% |
| !!! | AATTTTTGTATTTGGTATTT+TGG | + | chr1_1:62898675-62898694 | None:intergenic | 15.0% |
| !! | TAGAATCTTGAAAAAAATAT+TGG | + | chr1_1:62898796-62898815 | None:intergenic | 15.0% |
| !! | AATGATGTAATATTGAAATT+TGG | - | chr1_1:62900221-62900240 | Msa0034930:intron | 15.0% |
| !! | TTATTTATTCAATTCAACAG+TGG | - | chr1_1:62897889-62897908 | Msa0034930:three_prime_UTR | 20.0% |
| !! | AAAAAACATATCTATGTCAA+TGG | + | chr1_1:62897947-62897966 | None:intergenic | 20.0% |
| !! | AGTTTCATTAATTTCATCTA+AGG | + | chr1_1:62898615-62898634 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCAAGATTCTAAC+TGG | - | chr1_1:62898798-62898817 | Msa0034930:CDS | 20.0% |
| !!! | TGTAATTTGATACATTTTAC+GGG | + | chr1_1:62899271-62899290 | None:intergenic | 20.0% |
| !!! | CTGTAATTTGATACATTTTA+CGG | + | chr1_1:62899272-62899291 | None:intergenic | 20.0% |
| !!! | TTTAGAAATCTGAAATTGTT+CGG | + | chr1_1:62900073-62900092 | None:intergenic | 20.0% |
| !!! | TTTTCTTAGCCTTTTTAGAA+AGG | + | chr1_1:62897924-62897943 | None:intergenic | 25.0% |
| ! | AAAGGCTAAAATTGTTGATA+TGG | - | chr1_1:62898141-62898160 | Msa0034930:CDS | 25.0% |
| !! | TTGCAGTTTATGTTGTTTAT+CGG | - | chr1_1:62898384-62898403 | Msa0034930:CDS | 25.0% |
| !!! | CTATCTGGAATTTTTGTATT+TGG | + | chr1_1:62898683-62898702 | None:intergenic | 25.0% |
| !!! | TTGTTTTACTTTCTTCAAGT+TGG | - | chr1_1:62899089-62899108 | Msa0034930:CDS | 25.0% |
| !!! | TGTTTTACTTTCTTCAAGTT+GGG | - | chr1_1:62899090-62899109 | Msa0034930:CDS | 25.0% |
| ! | GAACAATTTCAGATTTCTAA+AGG | - | chr1_1:62900072-62900091 | Msa0034930:CDS | 25.0% |
| ! | TAAAGCTCTCATAAAATGTT+TGG | - | chr1_1:62900112-62900131 | Msa0034930:CDS | 25.0% |
| ! | TACATTACTCACAAAATAGA+CGG | + | chr1_1:62900202-62900221 | None:intergenic | 25.0% |
| !! | TACTGCATGATAATGTATAA+TGG | - | chr1_1:62900274-62900293 | Msa0034930:intron | 25.0% |
| !!! | ACATTCTTTTTCATAACTCA+CGG | + | chr1_1:62900323-62900342 | None:intergenic | 25.0% |
| TAAATACTGAAACAAACACC+CGG | + | chr1_1:62897872-62897891 | None:intergenic | 30.0% | |
| ! | TCCTGATTTCCTTTCTAAAA+AGG | - | chr1_1:62897912-62897931 | Msa0034930:three_prime_UTR | 30.0% |
| ! | TGTTAGTCTCTTCTTACAAA+TGG | - | chr1_1:62898076-62898095 | Msa0034930:CDS | 30.0% |
| ! | ACAAATGGTACTCATCTTTT+TGG | - | chr1_1:62898091-62898110 | Msa0034930:CDS | 30.0% |
| ! | CAAATGGTACTCATCTTTTT+GGG | - | chr1_1:62898092-62898111 | Msa0034930:CDS | 30.0% |
| TATCAACTATATGCTTCCTT+CGG | + | chr1_1:62898121-62898140 | None:intergenic | 30.0% | |
| !! | GGAAGCATATAGTTGATAAA+AGG | - | chr1_1:62898123-62898142 | Msa0034930:CDS | 30.0% |
| CTTATGATCTTTAGTGTCTT+TGG | + | chr1_1:62898219-62898238 | None:intergenic | 30.0% | |
| ! | TTTATGTTGTTTATCGGTCA+TGG | - | chr1_1:62898390-62898409 | Msa0034930:CDS | 30.0% |
| GAATAATCAAATATGGTGAG+AGG | - | chr1_1:62898459-62898478 | Msa0034930:CDS | 30.0% | |
| ACCAAACTATGCTAAATTCA+TGG | - | chr1_1:62898550-62898569 | Msa0034930:CDS | 30.0% | |
| TCCATGAATTTAGCATAGTT+TGG | + | chr1_1:62898554-62898573 | None:intergenic | 30.0% | |
| TACACTGCTAAAAAAGATGA+AGG | - | chr1_1:62898578-62898597 | Msa0034930:CDS | 30.0% | |
| GTATTAGGATCCAAAACTAA+GGG | + | chr1_1:62898641-62898660 | None:intergenic | 30.0% | |
| AGTATTAGGATCCAAAACTA+AGG | + | chr1_1:62898642-62898661 | None:intergenic | 30.0% | |
| ! | TTTTGGATCCTAATACTCAA+GGG | - | chr1_1:62898645-62898664 | Msa0034930:CDS | 30.0% |
| !!! | AAAAATATTGGCTGCTTTTG+TGG | + | chr1_1:62898784-62898803 | None:intergenic | 30.0% |
| !!! | AGATGCTTTTAAAGCAATTG+AGG | - | chr1_1:62898823-62898842 | Msa0034930:CDS | 30.0% |
| !! | GTATATGAACTTGATGATGA+AGG | - | chr1_1:62898986-62899005 | Msa0034930:CDS | 30.0% |
| ATGATGAAGGAAACAAATAC+AGG | - | chr1_1:62898999-62899018 | Msa0034930:CDS | 30.0% | |
| !!! | CAGAGACTTGTTTTGTTTTT+TGG | + | chr1_1:62899336-62899355 | None:intergenic | 30.0% |
| AAAAACAAAACAAGTCTCTG+AGG | - | chr1_1:62899336-62899355 | Msa0034930:CDS | 30.0% | |
| AAAACAAAACAAGTCTCTGA+GGG | - | chr1_1:62899337-62899356 | Msa0034930:CDS | 30.0% | |
| GTGATCAAGTTCTTAACAAA+TGG | - | chr1_1:62899449-62899468 | Msa0034930:CDS | 30.0% | |
| ATAATGTTCGTGACATTAAC+CGG | - | chr1_1:62899479-62899498 | Msa0034930:CDS | 30.0% | |
| TGAAAAAAGCCAATTGTTGT+CGG | - | chr1_1:62899621-62899640 | Msa0034930:CDS | 30.0% | |
| ACATATAATCCGACAACAAT+TGG | + | chr1_1:62899633-62899652 | None:intergenic | 30.0% | |
| ! | TTCTAAAGACTGTAGTGATT+TGG | + | chr1_1:62899878-62899897 | None:intergenic | 30.0% |
| ! | ATCACTACAGTCTTTAGAAA+CGG | - | chr1_1:62899879-62899898 | Msa0034930:CDS | 30.0% |
| GGAAATGATAAGTCATGTTT+GGG | - | chr1_1:62899930-62899949 | Msa0034930:CDS | 30.0% | |
| ! | AGATTTCTAAAGGTCATGTA+AGG | - | chr1_1:62900082-62900101 | Msa0034930:CDS | 30.0% |
| ! | GATTTCTAAAGGTCATGTAA+GGG | - | chr1_1:62900083-62900102 | Msa0034930:CDS | 30.0% |
| AGACATAATAAACTCTAACC+AGG | + | chr1_1:62900367-62900386 | None:intergenic | 30.0% | |
| CATAACAAGTCATATAGCTG+TGG | - | chr1_1:62897780-62897799 | Msa0034930:three_prime_UTR | 35.0% | |
| !! | GCCTTTTTAGAAAGGAAATC+AGG | + | chr1_1:62897916-62897935 | None:intergenic | 35.0% |
| TAATCACAATAGTCCAAGTC+TGG | - | chr1_1:62898013-62898032 | Msa0034930:three_prime_UTR | 35.0% | |
| AGTGGAATGTATTGGAACTT+CGG | - | chr1_1:62898042-62898061 | Msa0034930:CDS | 35.0% | |
| ! | TGTATTGGAACTTCGGATTT+TGG | - | chr1_1:62898049-62898068 | Msa0034930:CDS | 35.0% |
| AGACACCAACTTCGTAATTA+TGG | - | chr1_1:62898241-62898260 | Msa0034930:CDS | 35.0% | |
| AGTAATTCAAGCATATGTCG+TGG | + | chr1_1:62898350-62898369 | None:intergenic | 35.0% | |
| CATAAACTGCAACTGCTAAT+TGG | + | chr1_1:62898376-62898395 | None:intergenic | 35.0% | |
| AGGAACGGTGATATACTTAA+GGG | + | chr1_1:62898426-62898445 | None:intergenic | 35.0% | |
| TAGGAACGGTGATATACTTA+AGG | + | chr1_1:62898427-62898446 | None:intergenic | 35.0% | |
| GTGGCAGGAATAATCAAATA+TGG | - | chr1_1:62898452-62898471 | Msa0034930:CDS | 35.0% | |
| ATTTAGCATAGTTTGGTCCT+GGG | + | chr1_1:62898547-62898566 | None:intergenic | 35.0% | |
| AATTTAGCATAGTTTGGTCC+TGG | + | chr1_1:62898548-62898567 | None:intergenic | 35.0% | |
| ! | TGAAACTACTCCCTTAGTTT+TGG | - | chr1_1:62898628-62898647 | Msa0034930:CDS | 35.0% |
| !! | GTTTTGGATCCTAATACTCA+AGG | - | chr1_1:62898644-62898663 | Msa0034930:CDS | 35.0% |
| TGAAGATGAGATCTGCAAAT+AGG | + | chr1_1:62898751-62898770 | None:intergenic | 35.0% | |
| AGAAAAAGCTCACAGATTTC+AGG | + | chr1_1:62898919-62898938 | None:intergenic | 35.0% | |
| CAAATACAGGAATTATGACC+TGG | - | chr1_1:62899012-62899031 | Msa0034930:CDS | 35.0% | |
| AAAGCACAAAAGTGATAACC+AGG | + | chr1_1:62899033-62899052 | None:intergenic | 35.0% | |
| !! | ATCACTTTTGTGCTTTTCGT+CGG | - | chr1_1:62899037-62899056 | Msa0034930:CDS | 35.0% |
| !! | CTTCAAGTTGGGTAATGAAT+TGG | - | chr1_1:62899101-62899120 | Msa0034930:CDS | 35.0% |
| CTTTCAAGCAGAATCTTATG+AGG | + | chr1_1:62899243-62899262 | None:intergenic | 35.0% | |
| !! | ACTCATTTTTGACCAGCTTA+AGG | - | chr1_1:62899369-62899388 | Msa0034930:CDS | 35.0% |
| TAAAACATTATGCGCTCACA+GGG | - | chr1_1:62899426-62899445 | Msa0034930:CDS | 35.0% | |
| ! | TTGATCAGAGTATTCTGCTT+TGG | - | chr1_1:62899521-62899540 | Msa0034930:CDS | 35.0% |
| ATTGGTCCAAAGAAAGGAAA+TGG | - | chr1_1:62899908-62899927 | Msa0034930:CDS | 35.0% | |
| TTGGTCCAAAGAAAGGAAAT+GGG | - | chr1_1:62899909-62899928 | Msa0034930:CDS | 35.0% | |
| CATTTCCCATTTCCTTTCTT+TGG | + | chr1_1:62899917-62899936 | None:intergenic | 35.0% | |
| GGGAAATGATAAGTCATGTT+TGG | - | chr1_1:62899929-62899948 | Msa0034930:CDS | 35.0% | |
| AATGATAAGTCATGTTTGGG+TGG | - | chr1_1:62899933-62899952 | Msa0034930:CDS | 35.0% | |
| AGCTCTCATAAAATGTTTGG+TGG | - | chr1_1:62900115-62900134 | Msa0034930:CDS | 35.0% | |
| GCTCTCATAAAATGTTTGGT+GGG | - | chr1_1:62900116-62900135 | Msa0034930:CDS | 35.0% | |
| TAATAAACTCTAACCAGGTC+TGG | + | chr1_1:62900362-62900381 | None:intergenic | 35.0% | |
| CAGTAAGATAGGAAACCTGA+AGG | - | chr1_1:62897742-62897761 | Msa0034930:three_prime_UTR | 40.0% | |
| GGCAAAAGAGTGGAATGTAT+TGG | - | chr1_1:62898034-62898053 | Msa0034930:CDS | 40.0% | |
| !!! | TCATCTTTTTGGGTAACCGA+AGG | - | chr1_1:62898102-62898121 | Msa0034930:CDS | 40.0% |
| TCACTTATCTGTCAGCTGAT+TGG | - | chr1_1:62898165-62898184 | Msa0034930:CDS | 40.0% | |
| GATGGCCATAATTACGAAGT+TGG | + | chr1_1:62898249-62898268 | None:intergenic | 40.0% | |
| ACTTCGTAATTATGGCCATC+TGG | - | chr1_1:62898249-62898268 | Msa0034930:CDS | 40.0% | |
| CTTCGTAATTATGGCCATCT+GGG | - | chr1_1:62898250-62898269 | Msa0034930:CDS | 40.0% | |
| TTGGTTGTCTTCAAGAGAGT+AGG | + | chr1_1:62898321-62898340 | None:intergenic | 40.0% | |
| GGTGATATACTTAAGGGGAT+TGG | + | chr1_1:62898420-62898439 | None:intergenic | 40.0% | |
| GGAACGGTGATATACTTAAG+GGG | + | chr1_1:62898425-62898444 | None:intergenic | 40.0% | |
| ATTATTCCTGCCACGACAAT+AGG | + | chr1_1:62898446-62898465 | None:intergenic | 40.0% | |
| TCAAATATGGTGAGAGGACT+TGG | - | chr1_1:62898465-62898484 | Msa0034930:CDS | 40.0% | |
| ! | TTGGTTCTCCCTTGAGTATT+AGG | + | chr1_1:62898656-62898675 | None:intergenic | 40.0% |
| TCACGTAAAGCTTGACTATC+TGG | + | chr1_1:62898698-62898717 | None:intergenic | 40.0% | |
| GATAGTCAAGCTTTACGTGA+TGG | - | chr1_1:62898698-62898717 | Msa0034930:CDS | 40.0% | |
| AAAGCAATTGAGGTTGAGCT+AGG | - | chr1_1:62898833-62898852 | Msa0034930:CDS | 40.0% | |
| GTGATAACATATTCCTACCG+CGG | - | chr1_1:62898887-62898906 | Msa0034930:CDS | 40.0% | |
| !! | TCACTTTTGTGCTTTTCGTC+GGG | - | chr1_1:62899038-62899057 | Msa0034930:CDS | 40.0% |
| TCAAACTCTCACACACTATC+AGG | - | chr1_1:62899191-62899210 | Msa0034930:CDS | 40.0% | |
| CCTTAGACTTATCCTTAAGC+TGG | + | chr1_1:62899384-62899403 | None:intergenic | 40.0% | |
| CCAGCTTAAGGATAAGTCTA+AGG | - | chr1_1:62899381-62899400 | Msa0034930:CDS | 40.0% | |
| GTAAAACATTATGCGCTCAC+AGG | - | chr1_1:62899425-62899444 | Msa0034930:CDS | 40.0% | |
| AAAACATTATGCGCTCACAG+GGG | - | chr1_1:62899427-62899446 | Msa0034930:CDS | 40.0% | |
| ! | TGACATTAACCGGAGCATTA+AGG | - | chr1_1:62899489-62899508 | Msa0034930:CDS | 40.0% |
| ACTCTACATCCTTAATGCTC+CGG | + | chr1_1:62899501-62899520 | None:intergenic | 40.0% | |
| TTCCATTGGGCAGCAAAAAA+GGG | + | chr1_1:62899675-62899694 | None:intergenic | 40.0% | |
| ATTCCATTGGGCAGCAAAAA+AGG | + | chr1_1:62899676-62899695 | None:intergenic | 40.0% | |
| ! | TTTTTGCTGCCCAATGGAAT+AGG | - | chr1_1:62899676-62899695 | Msa0034930:CDS | 40.0% |
| CTGATCTGTCCTATTCCATT+GGG | + | chr1_1:62899688-62899707 | None:intergenic | 40.0% | |
| TCTGATCTGTCCTATTCCAT+TGG | + | chr1_1:62899689-62899708 | None:intergenic | 40.0% | |
| TACAGATATTCCACCATCAG+AGG | - | chr1_1:62899804-62899823 | Msa0034930:CDS | 40.0% | |
| ATTCCACCATCAGAGGTTAA+AGG | - | chr1_1:62899811-62899830 | Msa0034930:CDS | 40.0% | |
| CTATCACCTTTAACCTCTGA+TGG | + | chr1_1:62899820-62899839 | None:intergenic | 40.0% | |
| CCTACACGCATCAAACAATA+CGG | + | chr1_1:62899851-62899870 | None:intergenic | 40.0% | |
| ! | ACTACAGTCTTTAGAAACGG+AGG | - | chr1_1:62899882-62899901 | Msa0034930:CDS | 40.0% |
| ! | CTTTAGAAACGGAGGAGAAT+TGG | - | chr1_1:62899890-62899909 | Msa0034930:CDS | 40.0% |
| AGGAGAATTGGTCCAAAGAA+AGG | - | chr1_1:62899902-62899921 | Msa0034930:CDS | 40.0% | |
| CATGTTGAAGTCCTCTACAT+TGG | + | chr1_1:62899981-62900000 | None:intergenic | 40.0% | |
| !! | TGGCTTTTGATGGCTCATTT+AGG | - | chr1_1:62900042-62900061 | Msa0034930:CDS | 40.0% |
| TGCAGCTTCAGACAATGTAT+AGG | - | chr1_1:62900170-62900189 | Msa0034930:intron | 40.0% | |
| TTTGTTCCCTATGTACCACT+TGG | - | chr1_1:62900251-62900270 | Msa0034930:intron | 40.0% | |
| CATTATCATGCAGTACCAAG+TGG | + | chr1_1:62900269-62900288 | None:intergenic | 40.0% | |
| CTAACCAGGTCTGGAAAATA+AGG | + | chr1_1:62900353-62900372 | None:intergenic | 40.0% | |
| AAGCAAGCAATGTTACTCGC+TGG | - | chr1_1:62897842-62897861 | Msa0034930:three_prime_UTR | 45.0% | |
| AATGTTACTCGCTGGTAAGC+CGG | - | chr1_1:62897850-62897869 | Msa0034930:three_prime_UTR | 45.0% | |
| ! | TTCCACTCTTTTGCCAGACT+TGG | + | chr1_1:62898029-62898048 | None:intergenic | 45.0% |
| GGAAAGAATTCCCAGAGCAA+CGG | + | chr1_1:62898198-62898217 | None:intergenic | 45.0% | |
| CCAAGATGCACAAGGAGAAA+TGG | + | chr1_1:62898278-62898297 | None:intergenic | 45.0% | |
| CCATTTCTCCTTGTGCATCT+TGG | - | chr1_1:62898275-62898294 | Msa0034930:CDS | 45.0% | |
| TTTCTCCTTGTGCATCTTGG+TGG | - | chr1_1:62898278-62898297 | Msa0034930:CDS | 45.0% | |
| CTCTTGAAGACAACCAACTG+TGG | - | chr1_1:62898324-62898343 | Msa0034930:CDS | 45.0% | |
| TATCACCGTTCCTATTGTCG+TGG | - | chr1_1:62898433-62898452 | Msa0034930:CDS | 45.0% | |
| AGATCTGCAAATAGGCACTC+AGG | + | chr1_1:62898743-62898762 | None:intergenic | 45.0% | |
| ! | CACTTTTGTGCTTTTCGTCG+GGG | - | chr1_1:62899039-62899058 | Msa0034930:CDS | 45.0% |
| AACTCTCACACACTATCAGG+TGG | - | chr1_1:62899194-62899213 | Msa0034930:CDS | 45.0% | |
| ! | ACAAGTCTCTGAGGGATTGA+AGG | - | chr1_1:62899345-62899364 | Msa0034930:CDS | 45.0% |
| ATTTGAAGACACGTGTGCAG+AGG | - | chr1_1:62899708-62899727 | Msa0034930:CDS | 45.0% | |
| TCACCTTTAACCTCTGATGG+TGG | + | chr1_1:62899817-62899836 | None:intergenic | 45.0% | |
| CCGTATTGTTTGATGCGTGT+AGG | - | chr1_1:62899848-62899867 | Msa0034930:CDS | 45.0% | |
| !!! | TACCCATGTCTGGCTTTTGA+TGG | - | chr1_1:62900032-62900051 | Msa0034930:CDS | 45.0% |
| AGCCATCAAAAGCCAGACAT+GGG | + | chr1_1:62900037-62900056 | None:intergenic | 45.0% | |
| GCAGTACCAAGTGGTACATA+GGG | + | chr1_1:62900260-62900279 | None:intergenic | 45.0% | |
| TGCAGTACCAAGTGGTACAT+AGG | + | chr1_1:62900261-62900280 | None:intergenic | 45.0% | |
| !!! | ACTGCCTTATTTTCCAGACC+TGG | - | chr1_1:62900346-62900365 | Msa0034930:five_prime_UTR | 45.0% |
| ATGTTACTCGCTGGTAAGCC+GGG | - | chr1_1:62897851-62897870 | Msa0034930:three_prime_UTR | 50.0% | |
| GTCCAAGTCTGGCAAAAGAG+TGG | - | chr1_1:62898024-62898043 | Msa0034930:exon | 50.0% | |
| TTGGATTGCTACCGTTGCTC+TGG | - | chr1_1:62898184-62898203 | Msa0034930:CDS | 50.0% | |
| TGGATTGCTACCGTTGCTCT+GGG | - | chr1_1:62898185-62898204 | Msa0034930:CDS | 50.0% | |
| AAGGAGAAATGGTGCCCAGA+TGG | + | chr1_1:62898267-62898286 | None:intergenic | 50.0% | |
| GAGTAGGCAGTGATTGTGTC+AGG | + | chr1_1:62898305-62898324 | None:intergenic | 50.0% | |
| TCCTGCCACGACAATAGGAA+CGG | + | chr1_1:62898441-62898460 | None:intergenic | 50.0% | |
| TCTGAATCCATCGCTGCTTC+CGG | + | chr1_1:62898501-62898520 | None:intergenic | 50.0% | |
| CAGATTTCAGGAAGATGCCG+CGG | + | chr1_1:62898907-62898926 | None:intergenic | 50.0% | |
| GGCTGAGCAAGCATGAGAAT+CGG | - | chr1_1:62899122-62899141 | Msa0034930:CDS | 50.0% | |
| CAAGCATGAGAATCGGAGAG+TGG | - | chr1_1:62899129-62899148 | Msa0034930:CDS | 50.0% | |
| !!! | TGCCCTTTTTTGCTGCCCAA+TGG | - | chr1_1:62899670-62899689 | Msa0034930:CDS | 50.0% |
| CATGCTGCAAGCCAATGTAG+AGG | - | chr1_1:62899967-62899986 | Msa0034930:CDS | 50.0% | |
| CATGCTAAGCAACTCACCCA+AGG | - | chr1_1:62899997-62900016 | Msa0034930:CDS | 50.0% | |
| GGTAAGCAACTCACCACCTT+GGG | + | chr1_1:62900016-62900035 | None:intergenic | 50.0% | |
| GTGAGTTGCTTACCCATGTC+TGG | - | chr1_1:62900022-62900041 | Msa0034930:CDS | 50.0% | |
| GAGCCATCAAAAGCCAGACA+TGG | + | chr1_1:62900038-62900057 | None:intergenic | 50.0% | |
| CCTGACTGAGCAATGCCTTC+AGG | + | chr1_1:62897760-62897779 | None:intergenic | 55.0% | |
| !! | CCTGAAGGCATTGCTCAGTC+AGG | - | chr1_1:62897757-62897776 | Msa0034930:three_prime_UTR | 55.0% |
| CAGGACCACCAAGATGCACA+AGG | + | chr1_1:62898286-62898305 | None:intergenic | 55.0% | |
| GCATATGTCGTGGCCACAGT+TGG | + | chr1_1:62898340-62898359 | None:intergenic | 55.0% | |
| ACCGTTCCTATTGTCGTGGC+AGG | - | chr1_1:62898437-62898456 | Msa0034930:CDS | 55.0% | |
| ! | GTGAGAGGACTTGGTCACTG+CGG | - | chr1_1:62898474-62898493 | Msa0034930:CDS | 55.0% |
| TAGTTTGGTCCTGGGTCTGG+AGG | + | chr1_1:62898539-62898558 | None:intergenic | 55.0% | |
| GCATAGTTTGGTCCTGGGTC+TGG | + | chr1_1:62898542-62898561 | None:intergenic | 55.0% | |
| TTTCAGGAAGATGCCGCGGT+AGG | + | chr1_1:62898903-62898922 | None:intergenic | 55.0% | |
| TGAAGACACGTGTGCAGAGG+TGG | - | chr1_1:62899711-62899730 | Msa0034930:CDS | 55.0% | |
| GCTAAGCAACTCACCCAAGG+TGG | - | chr1_1:62900000-62900019 | Msa0034930:CDS | 55.0% | |
| GGGTAAGCAACTCACCACCT+TGG | + | chr1_1:62900017-62900036 | None:intergenic | 55.0% | |
| ! | AGGACTTGGTCACTGCGGTC+CGG | - | chr1_1:62898479-62898498 | Msa0034930:CDS | 60.0% |
| ATTCTCCCTCCTCCAGACCC+AGG | - | chr1_1:62898527-62898546 | Msa0034930:CDS | 60.0% | |
| TTGGTCCTGGGTCTGGAGGA+GGG | + | chr1_1:62898535-62898554 | None:intergenic | 60.0% | |
| TTTGGTCCTGGGTCTGGAGG+AGG | + | chr1_1:62898536-62898555 | None:intergenic | 60.0% | |
| CTGCGGTCCGGAAGCAGCGA+TGG | - | chr1_1:62898491-62898510 | Msa0034930:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62897742 | 62900416 | 62897742 | ID=Msa0034930;Name=Msa0034930 |
| chr1_1 | mRNA | 62897742 | 62900416 | 62897742 | ID=Msa0034930-mRNA-1;Parent=Msa0034930;Name=Msa0034930-mRNA-1;_AED=0.24;_eAED=0.24;_QI=109|1|1|1|1|1|2|291|722 |
| chr1_1 | exon | 62897742 | 62900188 | 62897742 | ID=Msa0034930-mRNA-1:exon:19989;Parent=Msa0034930-mRNA-1 |
| chr1_1 | exon | 62900295 | 62900416 | 62900295 | ID=Msa0034930-mRNA-1:exon:19988;Parent=Msa0034930-mRNA-1 |
| chr1_1 | five_prime_UTR | 62900308 | 62900416 | 62900308 | ID=Msa0034930-mRNA-1:five_prime_utr;Parent=Msa0034930-mRNA-1 |
| chr1_1 | CDS | 62900295 | 62900307 | 62900295 | ID=Msa0034930-mRNA-1:cds;Parent=Msa0034930-mRNA-1 |
| chr1_1 | CDS | 62898033 | 62900188 | 62898033 | ID=Msa0034930-mRNA-1:cds;Parent=Msa0034930-mRNA-1 |
| chr1_1 | three_prime_UTR | 62897742 | 62898032 | 62897742 | ID=Msa0034930-mRNA-1:three_prime_utr;Parent=Msa0034930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
