AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398310 MtrunA17_Chr3g0115371 97.619 336 6 1 1 334 1 336 0.0 671
Msa1398310 MtrunA17_Chr5g0424861 66.077 339 108 4 1 334 1 337 1.44e-148 435
Msa1398310 MtrunA17_Chr3g0115361 73.251 243 11 2 425 667 83 271 3.20e-110 333
Msa1398310 MtrunA17_Chr3g0124601 49.555 337 165 2 1 334 14 348 1.77e-107 330
Msa1398310 MtrunA17_Chr8g0382861 45.509 334 177 3 1 334 15 343 1.33e-90 286
Msa1398310 MtrunA17_Chr5g0424851 63.208 212 77 1 124 334 1 212 8.81e-88 281
Msa1398310 MtrunA17_Chr5g0424851 56.098 205 89 1 134 338 225 428 6.48e-74 244
Msa1398310 MtrunA17_Chr7g0256211 46.505 329 153 5 13 334 127 439 1.58e-86 278
Msa1398310 MtrunA17_Chr8g0353501 50.519 289 132 3 53 334 169 453 4.82e-86 277
Msa1398310 MtrunA17_Chr2g0321431 49.630 270 129 3 65 334 194 456 1.68e-77 256
Msa1398310 MtrunA17_Chr1g0174701 47.703 283 140 2 60 334 211 493 2.87e-76 253
Msa1398310 MtrunA17_Chr7g0258321 43.769 329 166 6 24 334 123 450 3.95e-74 246
Msa1398310 MtrunA17_Chr1g0210151 43.493 292 155 4 50 334 39 327 2.26e-72 237
Msa1398310 MtrunA17_Chr4g0026401 43.234 303 162 2 32 334 156 448 2.76e-72 242
Msa1398310 MtrunA17_Chr5g0422771 43.728 279 146 2 63 334 177 451 3.23e-70 236
Msa1398310 MtrunA17_Chr3g0093451 43.094 181 93 4 50 221 30 209 1.32e-39 144
Msa1398310 MtrunA17_Chr1g0196951 35.329 167 89 5 167 332 84 232 5.30e-17 80.9
Msa1398310 MtrunA17_Chr2g0315631 28.571 196 104 5 154 329 23 202 3.43e-13 69.3
Msa1398310 MtrunA17_Chr7g0242651 29.825 171 104 4 171 329 45 211 1.67e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398310 AT1G22070.1 50.992 353 152 4 1 334 19 369 4.71e-116 353
Msa1398310 AT1G77920.1 49.425 348 152 4 1 334 16 353 2.08e-108 332
Msa1398310 AT5G10030.5 48.521 338 168 2 1 334 14 349 2.38e-106 327
Msa1398310 AT5G10030.3 48.521 338 168 2 1 334 14 349 2.38e-106 327
Msa1398310 AT5G10030.1 48.521 338 168 2 1 334 14 349 2.38e-106 327
Msa1398310 AT5G10030.4 48.521 338 168 2 1 334 14 349 2.38e-106 327
Msa1398310 AT5G10030.2 48.521 338 168 2 1 334 14 349 2.38e-106 327
Msa1398310 AT5G65210.5 48.824 340 168 2 1 334 14 353 1.57e-105 325
Msa1398310 AT5G65210.7 48.824 340 168 2 1 334 14 353 1.57e-105 325
Msa1398310 AT5G65210.3 48.824 340 168 2 1 334 14 353 1.57e-105 325
Msa1398310 AT5G65210.1 48.824 340 168 2 1 334 14 353 1.57e-105 325
Msa1398310 AT5G65210.2 48.824 340 168 2 1 334 14 353 1.57e-105 325
Msa1398310 AT5G65210.4 48.824 340 168 2 1 334 14 353 1.57e-105 325
Msa1398310 AT5G65210.6 53.405 279 130 0 56 334 5 283 8.99e-99 305
Msa1398310 AT3G12250.5 47.917 288 140 2 53 334 7 290 7.22e-82 261
Msa1398310 AT3G12250.3 46.179 301 152 2 40 334 15 311 8.43e-82 262
Msa1398310 AT3G12250.6 47.917 288 140 2 53 334 34 317 1.17e-81 261
Msa1398310 AT3G12250.2 47.917 288 140 2 53 334 34 317 1.17e-81 261
Msa1398310 AT3G12250.7 47.917 288 140 2 53 334 34 317 1.17e-81 261
Msa1398310 AT3G12250.1 47.917 288 140 2 53 334 34 317 1.17e-81 261
Msa1398310 AT5G06950.2 47.569 288 141 2 53 334 34 317 2.02e-81 261
Msa1398310 AT5G06950.4 47.569 288 141 2 53 334 34 317 2.02e-81 261
Msa1398310 AT5G06950.1 47.569 288 141 2 53 334 34 317 2.02e-81 261
Msa1398310 AT5G06950.5 47.569 288 141 2 53 334 34 317 2.02e-81 261
Msa1398310 AT5G06950.3 47.569 288 141 2 53 334 34 317 2.02e-81 261
Msa1398310 AT3G12250.4 47.917 288 140 2 53 334 59 342 5.02e-81 261
Msa1398310 AT5G06960.3 49.281 278 131 2 63 334 24 297 1.56e-80 258
Msa1398310 AT5G06960.2 49.281 278 131 2 63 334 44 317 2.44e-80 258
Msa1398310 AT5G06960.1 49.281 278 131 2 63 334 44 317 2.44e-80 258
Msa1398310 AT1G08320.2 43.910 312 155 4 32 334 16 316 3.69e-79 256
Msa1398310 AT1G08320.5 43.910 312 155 4 32 334 16 316 3.69e-79 256
Msa1398310 AT1G77930.1 57.384 237 47 2 425 661 79 261 7.18e-79 252
Msa1398310 AT1G77930.2 57.384 237 47 2 425 661 79 261 7.18e-79 252
Msa1398310 AT1G08320.1 43.910 312 155 4 32 334 140 440 4.97e-77 254
Msa1398310 AT1G08320.4 43.910 312 155 4 32 334 140 440 4.97e-77 254
Msa1398310 AT1G08320.3 43.910 312 155 4 32 334 140 440 4.97e-77 254
Msa1398310 AT5G06839.1 45.918 294 136 4 60 334 113 402 8.24e-74 244
Msa1398310 AT5G06839.2 45.763 295 136 4 60 334 113 403 1.39e-73 243
Msa1398310 AT5G06839.3 45.918 294 136 4 60 334 156 445 2.53e-73 244
Msa1398310 AT1G68640.1 42.756 283 150 3 60 334 161 439 2.74e-65 222
Msa1398310 AT1G77930.3 52.273 176 30 2 425 600 79 200 9.01e-49 170

Find 160 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATTTGCTGCATTTAA+TGG 0.080172 tig0022248:+13772 None:intergenic
GCAGACATCAATTTCGATTT+AGG 0.096366 tig0022248:-11799 Msa1398310:intron
TTGAAATTGAATACGGAAAT+TGG 0.106575 tig0022248:-14276 Msa1398310:CDS
TGTAAATAGGGTTTGCAATT+AGG 0.149595 tig0022248:+11761 None:intergenic
CTTGAAAGTATTTCCATTTC+AGG 0.172636 tig0022248:+9973 None:intergenic
GAGAATTTATCTTTGCAATT+AGG 0.173142 tig0022248:-9033 Msa1398310:three_prime_UTR
TAACCATGGGGATTGTAAAT+AGG 0.217538 tig0022248:+11748 None:intergenic
TACCATAATGTTTCCCTTCA+TGG 0.222635 tig0022248:-9134 Msa1398310:three_prime_UTR
TTCGATTTAGGGCTTCATTT+TGG 0.247262 tig0022248:-11787 Msa1398310:CDS
TGGATTTAGTGAGAGATTAA+TGG 0.252757 tig0022248:-15373 Msa1398310:exon
CAGACATCAATTTCGATTTA+GGG 0.261433 tig0022248:-11798 Msa1398310:CDS
AAGTTGCAAAGACTTGTTTC+AGG 0.267001 tig0022248:+10306 None:intergenic
AGAATTTATCTTTGCAATTA+GGG 0.276595 tig0022248:-9032 Msa1398310:three_prime_UTR
CTAGGGGCTTGATTGCTCTT+GGG 0.281037 tig0022248:-13418 Msa1398310:CDS
ATTTCAGCAGTACCCTTAAA+AGG 0.282851 tig0022248:-9337 Msa1398310:CDS
GTAAATAGGGTTTGCAATTA+GGG 0.285181 tig0022248:+11762 None:intergenic
AACCATGGGGATTGTAAATA+GGG 0.305716 tig0022248:+11749 None:intergenic
TGGATCAACATATTAGTTAC+TGG 0.327419 tig0022248:+9158 None:intergenic
TTCTACATGGCTTGGTTCTT+CGG 0.334699 tig0022248:-11723 Msa1398310:CDS
TCTTTGCAATTAGGGTCATT+TGG 0.346331 tig0022248:-9024 Msa1398310:three_prime_UTR
TCCCATAAAACTGGTATCTA+AGG 0.348603 tig0022248:+14410 None:intergenic
GTTAGCATAGCAATCTATAT+AGG 0.348948 tig0022248:-15903 Msa1398310:intron
CACCCCACATGCTAACTTGC+TGG 0.350263 tig0022248:+15334 None:intergenic
GCTAGGGGCTTGATTGCTCT+TGG 0.359255 tig0022248:-13419 Msa1398310:CDS
ATCCATGAAGGGAAACATTA+TGG 0.360229 tig0022248:+9132 None:intergenic
AAAGATTGCTTATAGACGTT+TGG 0.369471 tig0022248:-11201 Msa1398310:CDS
GAAAAGCCGGGAGCGCAAAA+AGG 0.370740 tig0022248:-14880 Msa1398310:intron
ATGCAATTGGAGCTGGAGAT+TGG 0.373155 tig0022248:-14580 Msa1398310:CDS
TGAAATTGAATACGGAAATT+GGG 0.386776 tig0022248:-14275 Msa1398310:CDS
ACAAGAGACTACAAACAATA+AGG 0.391876 tig0022248:-15055 Msa1398310:intron
TTCAGATGATCCCATAAAAC+TGG 0.394744 tig0022248:+14401 None:intergenic
TCCTTGTGAAAGAGCATCTT+CGG 0.402772 tig0022248:+13840 None:intergenic
CTGTGGCGAAAGCAACGAAT+TGG 0.403026 tig0022248:-11652 Msa1398310:CDS
CAGATTGAAGCTCATGCAAT+TGG 0.405773 tig0022248:-14593 Msa1398310:CDS
CTGCCGTTTCACCTTCCTCA+AGG 0.406425 tig0022248:+10604 None:intergenic
GTTGCGTTTGAAATTGAATA+CGG 0.408058 tig0022248:-14283 Msa1398310:CDS
GTGATATGGCAATTTATGCT+TGG 0.410426 tig0022248:-9768 Msa1398310:CDS
AATTATAGTGAACGCGAGAC+TGG 0.414073 tig0022248:-9196 Msa1398310:exon
GAAGGGAAACATTATGGTAT+TGG 0.415073 tig0022248:+9138 None:intergenic
TGATATGGCAATTTATGCTT+GGG 0.419580 tig0022248:-9767 Msa1398310:CDS
AAATAAACTCCAGGAGAGTC+TGG 0.422863 tig0022248:-13815 Msa1398310:CDS
TGAGCTCTTCGTTCCGCCTA+TGG 0.423220 tig0022248:+14242 None:intergenic
TGCAATTGGAGCTGGAGATT+GGG 0.428890 tig0022248:-14579 Msa1398310:CDS
CCACAGTTCTCTTCTGATTG+AGG 0.429219 tig0022248:+11669 None:intergenic
TCAGCTTCTGAATGATCCCT+TGG 0.431043 tig0022248:+15078 None:intergenic
GTCCGAAGTGCAGCTTCGTC+TGG 0.433393 tig0022248:-14197 Msa1398310:CDS
TTTACTCTTCAAGTCTATGA+TGG 0.433498 tig0022248:-10636 Msa1398310:intron
AGAATCTTCCTATATTCATC+TGG 0.433520 tig0022248:+9389 None:intergenic
GTTTGTTCTTCAATTGTGTA+TGG 0.439846 tig0022248:-11266 Msa1398310:CDS
CTAAATCCAATTGATAAAAG+TGG 0.439900 tig0022248:+15387 None:intergenic
AAATTACCAAGAGTTTCATA+TGG 0.440349 tig0022248:+11614 None:intergenic
CCCCATGGTTATATTCTACA+TGG 0.443945 tig0022248:-11736 Msa1398310:CDS
TGGTTATATTCTACATGGCT+TGG 0.448434 tig0022248:-11731 Msa1398310:CDS
AATTACCAAGAGTTTCATAT+GGG 0.462947 tig0022248:+11615 None:intergenic
ATGGAACAAATGCCATGTCT+TGG 0.464262 tig0022248:+13791 None:intergenic
AGGTTGATCCAGATGAATAT+AGG 0.465707 tig0022248:-9397 Msa1398310:CDS
AGATGAATATAGGAAGATTC+TGG 0.467333 tig0022248:-9387 Msa1398310:CDS
AGTTGCAAAGACTTGTTTCA+GGG 0.467782 tig0022248:+10307 None:intergenic
GGCTGTGATACAGCCTGAAA+TGG 0.468691 tig0022248:-9986 Msa1398310:CDS
GGTGACAGCTTTAAAGTTGA+AGG 0.469579 tig0022248:-15315 Msa1398310:CDS
CCATTAAATGCAGCAAATCA+TGG 0.469880 tig0022248:-13772 Msa1398310:CDS
GTCGACAGGCAGATCATCTC+AGG 0.470981 tig0022248:-13490 Msa1398310:intron
GTCTACACACCAAGGTGCTA+GGG 0.472353 tig0022248:-13435 Msa1398310:CDS
TAGGGGCTTGATTGCTCTTG+GGG 0.473739 tig0022248:-13417 Msa1398310:CDS
TGTCTTGGACCAGACTCTCC+TGG 0.474340 tig0022248:+13806 None:intergenic
CACATGCTAACTTGCTGGAA+TGG 0.476844 tig0022248:+15339 None:intergenic
TGCCGTTTCACCTTCCTCAA+GGG 0.480126 tig0022248:+10605 None:intergenic
ATTCGATCAGACCCATGCTT+CGG 0.489870 tig0022248:-11697 Msa1398310:CDS
TGTGGCGAAAGCAACGAATT+GGG 0.490446 tig0022248:-11651 Msa1398310:CDS
TGACCAGCTTGAAACGTAGA+AGG 0.496866 tig0022248:+10254 None:intergenic
TAGCACCTTGGTGTGTAGAC+AGG 0.499406 tig0022248:+13438 None:intergenic
ATCCTCCGATCCATAGGAAA+AGG 0.500037 tig0022248:+14062 None:intergenic
GTATGGTGAAACAACAGAAC+TGG 0.503405 tig0022248:-11249 Msa1398310:CDS
CACTACTAGCATGGAGAACA+AGG 0.505528 tig0022248:-15247 Msa1398310:intron
TGTCTACACACCAAGGTGCT+AGG 0.507663 tig0022248:-13436 Msa1398310:CDS
CCATAGGAAAAGGCGCTCTA+CGG 0.507714 tig0022248:+14072 None:intergenic
AAAATATGACACGGCTAACC+AGG 0.515733 tig0022248:-10520 Msa1398310:CDS
GATTGGGAGAGCAAGAAAGC+AGG 0.518438 tig0022248:-14563 Msa1398310:intron
TATTGCTATAGACAAATTTG+AGG 0.520557 tig0022248:-13737 Msa1398310:CDS
TCAGGCATCTCAAGCATGGA+TGG 0.521128 tig0022248:-9830 Msa1398310:intron
AACCCTTGAGGAAGGTGAAA+CGG 0.521649 tig0022248:-10607 Msa1398310:CDS
AAGAATAGTCAGATCCATGA+AGG 0.524210 tig0022248:+9120 None:intergenic
AAAACCCCATATGAAACTCT+TGG 0.524253 tig0022248:-11620 Msa1398310:intron
TAGTTGCAGGGTATTTGCAC+AGG 0.526630 tig0022248:-14438 Msa1398310:intron
TCTCCTTCTACGTTTCAAGC+TGG 0.527468 tig0022248:-10257 Msa1398310:intron
TGTACATTTAGAAGTTGTGA+TGG 0.532177 tig0022248:+14034 None:intergenic
GATTCTGGCAAGAGAAAAGA+AGG 0.532183 tig0022248:-9372 Msa1398310:CDS
GAAGCTCATGCAATTGGAGC+TGG 0.532336 tig0022248:-14587 Msa1398310:CDS
GAGAGGCTGCTAAGAAAAGC+CGG 0.533392 tig0022248:-14893 Msa1398310:CDS
AATGAAAACGGATGCTGCAA+AGG 0.533573 tig0022248:-14134 Msa1398310:CDS
GATCCCCTCTATTTAATCTC+CGG 0.535169 tig0022248:-14109 Msa1398310:CDS
AATTCTTAGCATCAATCAGA+AGG 0.535444 tig0022248:-15975 Msa1398310:five_prime_UTR
AAGGTGAAACGGCAGAAGCT+AGG 0.542000 tig0022248:-10596 Msa1398310:CDS
TCGTCAACTTTCTCGTTCAA+AGG 0.543406 tig0022248:-9710 Msa1398310:intron
TTACTGTTCACTAGTAACAT+TGG 0.550321 tig0022248:+15270 None:intergenic
ATTGCTATAGACAAATTTGA+GGG 0.550505 tig0022248:-13736 Msa1398310:CDS
CAGCCTCTCGATTCTGTGAG+AGG 0.550635 tig0022248:+14907 None:intergenic
CTTCAAGTCTATGATGGAAG+AGG 0.550880 tig0022248:-10630 Msa1398310:intron
GACAAATTTGAGGGACTCGA+AGG 0.552796 tig0022248:-13727 Msa1398310:CDS
TTACCTTCATAGGGTTGACC+TGG 0.555641 tig0022248:+10502 None:intergenic
GTACATTTAGAAGTTGTGAT+GGG 0.555666 tig0022248:+14035 None:intergenic
TAACCAGGTCAACCCTATGA+AGG 0.562390 tig0022248:-10505 Msa1398310:intron
ACACACCGGAGATTAAATAG+AGG 0.563190 tig0022248:+14104 None:intergenic
ATTGAGGCGAAACCGAAGCA+TGG 0.565622 tig0022248:+11685 None:intergenic
ATTGGGTTGACGAGAACCAT+AGG 0.567572 tig0022248:-14258 Msa1398310:CDS
CTTGGTGTGTAGACAGGATG+CGG 0.573164 tig0022248:+13444 None:intergenic
TCATTCAGGCATCTCAAGCA+TGG 0.574313 tig0022248:-9834 Msa1398310:intron
GCCATGTAGAATATAACCAT+GGG 0.576894 tig0022248:+11735 None:intergenic
TCTATTTAATCTCCGGTGTG+TGG 0.577155 tig0022248:-14102 Msa1398310:CDS
AGGAAAAGGCGCTCTACGGA+TGG 0.579044 tig0022248:+14076 None:intergenic
GGACATCTCTTAGCCGCAGA+AGG 0.579963 tig0022248:-9245 Msa1398310:CDS
GAAGAAATGAAGAAGACTAT+CGG 0.580783 tig0022248:-9266 Msa1398310:CDS
TCAGACAAAGGCTCAAGTTG+TGG 0.581334 tig0022248:+13910 None:intergenic
CATCTCAAGCATGGATGGAG+TGG 0.584888 tig0022248:-9825 Msa1398310:CDS
CACACCGGAGATTAAATAGA+GGG 0.585253 tig0022248:+14105 None:intergenic
GAATGATCCCTTGGTTCATG+AGG 0.586065 tig0022248:+15087 None:intergenic
CATTCCAGCAAGTTAGCATG+TGG 0.586492 tig0022248:-15338 Msa1398310:CDS
GGAAGAGGAACCCTTGAGGA+AGG 0.586551 tig0022248:-10615 Msa1398310:CDS
ACTATCCACTCTTATATCTG+TGG 0.588253 tig0022248:-10007 Msa1398310:CDS
AGAGGCTGCTAAGAAAAGCC+GGG 0.588682 tig0022248:-14892 Msa1398310:CDS
ACAAGGACTAAATAAACTCC+AGG 0.589120 tig0022248:-13824 Msa1398310:CDS
GAACAGTAACACTACTAGCA+TGG 0.589169 tig0022248:-15256 Msa1398310:CDS
ATTATAGTGAACGCGAGACT+GGG 0.592694 tig0022248:-9195 Msa1398310:exon
GGCGAGATCCTCCGATCCAT+AGG 0.593085 tig0022248:+14056 None:intergenic
GAGTGTCTTGAATCATTACT+CGG 0.593826 tig0022248:-14167 Msa1398310:CDS
CAATCAAGCCCCTAGCACCT+TGG 0.595789 tig0022248:+13426 None:intergenic
TTGAGGCGAAACCGAAGCAT+GGG 0.597119 tig0022248:+11686 None:intergenic
TTCCAGCAAGTTAGCATGTG+GGG 0.599412 tig0022248:-15336 Msa1398310:CDS
AACCCTATTTACAATCCCCA+TGG 0.600639 tig0022248:-11751 Msa1398310:CDS
TGAGCTTGATGATAGTGAAG+AGG 0.600957 tig0022248:-9219 Msa1398310:CDS
AACCAGACGAAGCTGCACTT+CGG 0.601003 tig0022248:+14195 None:intergenic
GCCGAAGATGCTCTTTCACA+AGG 0.601136 tig0022248:-13841 Msa1398310:CDS
AATATATTCCTCATGAACCA+AGG 0.603855 tig0022248:-15095 Msa1398310:CDS
TGCTTATAGATGCAGAGAGG+CGG 0.606451 tig0022248:-10545 Msa1398310:CDS
AACATTTGTTCATCAGACAA+AGG 0.607845 tig0022248:+13898 None:intergenic
GGAGAGTCTGGTCCAAGACA+TGG 0.608703 tig0022248:-13803 Msa1398310:CDS
AGCAAATCATGGAATTCAGA+TGG 0.610088 tig0022248:-13761 Msa1398310:CDS
ATCAAGCTCAAGACCTTCTG+CGG 0.612130 tig0022248:+9232 None:intergenic
TACGGATGGTTTCCACACAC+CGG 0.623678 tig0022248:+14090 None:intergenic
ATTCTTAGCATCAATCAGAA+GGG 0.626123 tig0022248:-15974 Msa1398310:five_prime_UTR
ATATATTCCTCATGAACCAA+GGG 0.628071 tig0022248:-15094 Msa1398310:CDS
GACAGCTTTAAAGTTGAAGG+TGG 0.628685 tig0022248:-15312 Msa1398310:CDS
TTGGTGTGTAGACAGGATGC+GGG 0.633617 tig0022248:+13445 None:intergenic
AGAATAGTCAGATCCATGAA+GGG 0.635596 tig0022248:+9121 None:intergenic
AGCCATGTAGAATATAACCA+TGG 0.636683 tig0022248:+11734 None:intergenic
TCTACACACCAAGGTGCTAG+GGG 0.638389 tig0022248:-13434 Msa1398310:CDS
ATTCCAGCAAGTTAGCATGT+GGG 0.642837 tig0022248:-15337 Msa1398310:CDS
ATTACCAAGAGTTTCATATG+GGG 0.647825 tig0022248:+11616 None:intergenic
TCATCTGAAACAATTAACCC+AGG 0.648000 tig0022248:-14387 Msa1398310:intron
AATTAGGGTCATTTGGACTG+AGG 0.648676 tig0022248:-9017 Msa1398310:three_prime_UTR
TGATGGAAGAGGAACCCTTG+AGG 0.650992 tig0022248:-10619 Msa1398310:CDS
CACAGCCACAGATATAAGAG+TGG 0.653028 tig0022248:+10002 None:intergenic
CGCATCCTGTCTACACACCA+AGG 0.659708 tig0022248:-13443 Msa1398310:CDS
GGTGAAACAACAGAACTGGA+AGG 0.677606 tig0022248:-11245 Msa1398310:CDS
ACGCCTCTCACAGAATCGAG+AGG 0.691290 tig0022248:-14910 Msa1398310:CDS
ACACCGGAGATTAAATAGAG+GGG 0.728769 tig0022248:+14106 None:intergenic
CCATGTAGAATATAACCATG+GGG 0.734302 tig0022248:+11736 None:intergenic
GGGTTGACGAGAACCATAGG+CGG 0.739081 tig0022248:-14255 Msa1398310:CDS
CCTCAATCAGAAGAGAACTG+TGG 0.739950 tig0022248:-11669 Msa1398310:CDS
AATTGCTTATAGATGCAGAG+AGG 0.753654 tig0022248:-10548 Msa1398310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAATATTATTTATTATC+AGG - tig0022248:9602-9621 Msa1398310:intron 10.0%
!! TAATGAATTTCATAAAAATA+AGG + tig0022248:12691-12710 None:intergenic 10.0%
!! AAATAATAATAGAAAATTCA+CGG - tig0022248:12974-12993 Msa1398310:intron 10.0%
!! TTAAACTAATATCTAATATA+TGG - tig0022248:14791-14810 Msa1398310:intron 10.0%
!! AACTATATATGTATTTAGTT+TGG - tig0022248:9170-9189 Msa1398310:three_prime_UTR 15.0%
!!! TTATCTCTTGATTTATTTTA+AGG - tig0022248:9385-9404 Msa1398310:CDS 15.0%
!! AGGTAATATAATTTACTTAT+AGG - tig0022248:10161-10180 Msa1398310:intron 15.0%
!! ACTATATATATTGAATTGAA+AGG - tig0022248:11939-11958 Msa1398310:intron 15.0%
!! AAAAATCATTTCAATTCAAA+TGG - tig0022248:12054-12073 Msa1398310:intron 15.0%
!! AAAATCATTTCAATTCAAAT+GGG - tig0022248:12055-12074 Msa1398310:intron 15.0%
!! AATTTCATAAAAATAAGGAA+GGG + tig0022248:12686-12705 None:intergenic 15.0%
!!! AAAATACATTTAAGATATCT+AGG + tig0022248:12870-12889 None:intergenic 15.0%
!!! TAAATGTATTTTAGCTATTT+TGG - tig0022248:12878-12897 Msa1398310:intron 15.0%
!! TTAATCTAATAGCTAAAAAT+TGG - tig0022248:13471-13490 Msa1398310:CDS 15.0%
!! TAGATTAACTATTTAAATGA+TGG - tig0022248:13592-13611 Msa1398310:intron 15.0%
!! AAAAAAATTTAGATAACTCT+CGG - tig0022248:14215-14234 Msa1398310:CDS 15.0%
!! ATAAAAATATTACCTTCATA+GGG + tig0022248:14531-14550 None:intergenic 15.0%
!! AATAAAAATATTACCTTCAT+AGG + tig0022248:14532-14551 None:intergenic 15.0%
!!! AGGTAATATTTTTATTTTTG+TGG - tig0022248:14536-14555 Msa1398310:intron 15.0%
!! ATTTGATAGAATGAATATGT+TGG - tig0022248:9319-9338 Msa1398310:CDS 20.0%
!!! ATTTGTAACTTTTTGAGTAA+TGG - tig0022248:9421-9440 Msa1398310:intron 20.0%
!! CAAAATGACTAAAACAATTT+AGG - tig0022248:9452-9471 Msa1398310:intron 20.0%
!!! AAAATTCCACTTTTATCAAT+TGG - tig0022248:9628-9647 Msa1398310:intron 20.0%
!!! GTTTTATCACAAAACATTTT+TGG + tig0022248:10038-10057 None:intergenic 20.0%
!!! AAATGTTTTGTGATAAAACA+TGG - tig0022248:10039-10058 Msa1398310:intron 20.0%
!!! GGTAAATAAATTGTTAGTTT+TGG + tig0022248:10488-10507 None:intergenic 20.0%
!! TAGCGAATTAGATTAAAAAT+TGG - tig0022248:11023-11042 Msa1398310:intron 20.0%
!! TCAATTTGATAAATTGTGAA+TGG - tig0022248:11500-11519 Msa1398310:intron 20.0%
!! AAAAGATACTAAAAAGAAGA+TGG + tig0022248:11968-11987 None:intergenic 20.0%
!!! TTAGTATCTTTTGAATTGAA+AGG - tig0022248:11976-11995 Msa1398310:intron 20.0%
!! ATTTCATAAAAATAAGGAAG+GGG + tig0022248:12685-12704 None:intergenic 20.0%
!! GAATTTCATAAAAATAAGGA+AGG + tig0022248:12687-12706 None:intergenic 20.0%
!!! TTGTTCCTTTTTGAAAAAAT+TGG - tig0022248:13512-13531 Msa1398310:intron 20.0%
!!! TTTGACCAATTTTTTCAAAA+AGG + tig0022248:13520-13539 None:intergenic 20.0%
!! ACTATTTAAATGATGGTTAA+TGG - tig0022248:13599-13618 Msa1398310:intron 20.0%
!! TAATTAAAAAAACACTAGCA+CGG + tig0022248:14323-14342 None:intergenic 20.0%
!!! TTAAGATTTATGAGTTTTCA+AGG + tig0022248:15079-15098 None:intergenic 20.0%
!! AGAATTTATCTTTGCAATTA+GGG - tig0022248:15989-16008 Msa1398310:five_prime_UTR 20.0%
!! CTTAGATTAACCAAATTTTG+AGG - tig0022248:9079-9098 Msa1398310:intron 25.0%
!!! GAATTTTTAGCCTCAAAATT+TGG + tig0022248:9092-9111 None:intergenic 25.0%
!! ATATATAGTTCTACTAGAGA+AGG + tig0022248:9160-9179 None:intergenic 25.0%
! CTCAAATAAGCTATGTAAAT+TGG + tig0022248:9205-9224 None:intergenic 25.0%
!!! TAGAATGAATATGTTGGTTT+TGG - tig0022248:9325-9344 Msa1398310:CDS 25.0%
!!! TCTCTTGATTTATTTTAAGG+AGG - tig0022248:9388-9407 Msa1398310:CDS 25.0%
!!! TTGATTTATTTTAAGGAGGA+AGG - tig0022248:9392-9411 Msa1398310:CDS 25.0%
!!! TGATTTATTTTAAGGAGGAA+GGG - tig0022248:9393-9412 Msa1398310:CDS 25.0%
! CTAAATCCAATTGATAAAAG+TGG + tig0022248:9637-9656 None:intergenic 25.0%
! TAGTTAGTTAGTTAGTTAGT+TGG + tig0022248:10319-10338 None:intergenic 25.0%
! AAGCATATGTTTCATATTTG+TGG + tig0022248:10370-10389 None:intergenic 25.0%
! ATATAAATCAGAAGTGAAGA+TGG + tig0022248:10509-10528 None:intergenic 25.0%
! AAAATTTCTACTTTAGTTGC+AGG - tig0022248:10570-10589 Msa1398310:CDS 25.0%
! AAATTTCTACTTTAGTTGCA+GGG - tig0022248:10571-10590 Msa1398310:CDS 25.0%
! TTGAAATTGAATACGGAAAT+TGG - tig0022248:10745-10764 Msa1398310:intron 25.0%
! TGAAATTGAATACGGAAATT+GGG - tig0022248:10746-10765 Msa1398310:intron 25.0%
! TATTGCTATAGACAAATTTG+AGG - tig0022248:11284-11303 Msa1398310:CDS 25.0%
! ATTGCTATAGACAAATTTGA+GGG - tig0022248:11285-11304 Msa1398310:CDS 25.0%
! CTAGTTATAATTTGAACATC+AGG + tig0022248:11398-11417 None:intergenic 25.0%
! GAACAATGTAATGATGAATA+TGG + tig0022248:11482-11501 None:intergenic 25.0%
!!! AGTTTTATTGTGAATGAAGA+GGG - tig0022248:12029-12048 Msa1398310:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + tig0022248:12305-12324 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + tig0022248:12306-12325 None:intergenic 25.0%
!! TGACAATTTGTTTATAAGTG+GGG + tig0022248:12305-12324 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG + tig0022248:12306-12325 None:intergenic 25.0%
!! AAGTTAGACATCTCATTTTA+AGG - tig0022248:12755-12774 Msa1398310:intron 25.0%
!! GTTTGTAATTTTTCTTGAAG+AGG + tig0022248:13045-13064 None:intergenic 25.0%
! TTGATGTCTGCAATTAATAA+AGG + tig0022248:13213-13232 None:intergenic 25.0%
! AATTACCAAGAGTTTCATAT+GGG + tig0022248:13409-13428 None:intergenic 25.0%
! AAATTACCAAGAGTTTCATA+TGG + tig0022248:13410-13429 None:intergenic 25.0%
!!! TTGTTCCTTTTTGGAAAAAT+TGG - tig0022248:13442-13461 Msa1398310:CDS 25.0%
!!! TGTTCCTTTTTGGAAAAATT+GGG - tig0022248:13443-13462 Msa1398310:CDS 25.0%
! AAGAAGAAGTTAATGTGTTT+GGG - tig0022248:13631-13650 Msa1398310:intron 25.0%
! TTAGTTGTTACTGTTAAGTA+TGG - tig0022248:13658-13677 Msa1398310:intron 25.0%
!! CAATAGAGATGAAAATTTTG+TGG - tig0022248:13712-13731 Msa1398310:intron 25.0%
! TCAAATTCACATATAGAATG+AGG + tig0022248:13937-13956 None:intergenic 25.0%
!! ATTGGAAAGAACAATTTTCA+CGG - tig0022248:14153-14172 Msa1398310:CDS 25.0%
! AACATATCACAAACAACTAA+TGG + tig0022248:14293-14312 None:intergenic 25.0%
!!! CATTTTTTAATCCTGTAGAA+AGG - tig0022248:14871-14890 Msa1398310:intron 25.0%
!!! GCTTTTAGCTTTTAAACAAA+GGG + tig0022248:14919-14938 None:intergenic 25.0%
!!! TGCTTTTAGCTTTTAAACAA+AGG + tig0022248:14920-14939 None:intergenic 25.0%
!! TGACCATAACTTTATTTGTA+GGG + tig0022248:15406-15425 None:intergenic 25.0%
!!! TTGTTTTTCACCAAAGAATA+GGG - tig0022248:15505-15524 Msa1398310:intron 25.0%
! AATTCTCATTCAATTTAGTC+AGG + tig0022248:15975-15994 None:intergenic 25.0%
! GAGAATTTATCTTTGCAATT+AGG - tig0022248:15988-16007 Msa1398310:five_prime_UTR 25.0%
AATTCTTAGCATCAATCAGA+AGG - tig0022248:9046-9065 Msa1398310:three_prime_UTR 30.0%
ATTCTTAGCATCAATCAGAA+GGG - tig0022248:9047-9066 Msa1398310:three_prime_UTR 30.0%
GTTAGCATAGCAATCTATAT+AGG - tig0022248:9118-9137 Msa1398310:three_prime_UTR 30.0%
AAGCTATGTAAATTGGCAAT+TGG + tig0022248:9198-9217 None:intergenic 30.0%
!!! GATTTATTTTAAGGAGGAAG+GGG - tig0022248:9394-9413 Msa1398310:CDS 30.0%
!!! ATTTATTTTAAGGAGGAAGG+GGG - tig0022248:9395-9414 Msa1398310:CDS 30.0%
!!! CTTTTTTAAGATTCGAGCTT+TGG - tig0022248:9494-9513 Msa1398310:intron 30.0%
ACTACCAAACAATAGACTTA+TGG + tig0022248:9562-9581 None:intergenic 30.0%
TGGATTTAGTGAGAGATTAA+TGG - tig0022248:9648-9667 Msa1398310:intron 30.0%
TTACTGTTCACTAGTAACAT+TGG + tig0022248:9754-9773 None:intergenic 30.0%
AATATATTCCTCATGAACCA+AGG - tig0022248:9926-9945 Msa1398310:intron 30.0%
ATATATTCCTCATGAACCAA+GGG - tig0022248:9927-9946 Msa1398310:intron 30.0%
ACAAGAGACTACAAACAATA+AGG - tig0022248:9966-9985 Msa1398310:intron 30.0%
! TGTTCCTTTGTTGTGTAAAA+CGG - tig0022248:10199-10218 Msa1398310:intron 30.0%
!! ACTGTTCTATTGAGTTGAAT+GGG + tig0022248:10253-10272 None:intergenic 30.0%
!! AACTGTTCTATTGAGTTGAA+TGG + tig0022248:10254-10273 None:intergenic 30.0%
ATATCAAGAATCACAAACCT+GGG + tig0022248:10654-10673 None:intergenic 30.0%
! GTTGCGTTTGAAATTGAATA+CGG - tig0022248:10738-10757 Msa1398310:intron 30.0%
! GGATCTTTTCAGAATGAAAA+CGG - tig0022248:10875-10894 Msa1398310:intron 30.0%
GTACATTTAGAAGTTGTGAT+GGG + tig0022248:10989-11008 None:intergenic 30.0%
TGTACATTTAGAAGTTGTGA+TGG + tig0022248:10990-11009 None:intergenic 30.0%
TAATGATTAGTGATTCGTTG+AGG + tig0022248:11060-11079 None:intergenic 30.0%
AACATTTGTTCATCAGACAA+AGG + tig0022248:11126-11145 None:intergenic 30.0%
! CCTAGTTGATTCAAATTTCT+TGG + tig0022248:11344-11363 None:intergenic 30.0%
CCAAGAAATTTGAATCAACT+AGG - tig0022248:11341-11360 Msa1398310:intron 30.0%
TTCGTACTATTTGTTCTCTA+TGG - tig0022248:11642-11661 Msa1398310:CDS 30.0%
! CAGAACAGATGTTCAAATTT+TGG - tig0022248:11758-11777 Msa1398310:CDS 30.0%
!!! GAGTTTTATTGTGAATGAAG+AGG - tig0022248:12028-12047 Msa1398310:intron 30.0%
CAGATGATGTTACACATTAT+TGG - tig0022248:12101-12120 Msa1398310:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG + tig0022248:12304-12323 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + tig0022248:12307-12326 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG - tig0022248:12304-12323 Msa1398310:intron 30.0%
! TGAAGTGTCAACATAAATGA+CGG - tig0022248:12386-12405 Msa1398310:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG + tig0022248:12304-12323 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG + tig0022248:12307-12326 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG - tig0022248:12304-12323 Msa1398310:intron 30.0%
AATTATAACAAGCTGTTGTG+AGG + tig0022248:12608-12627 None:intergenic 30.0%
!!! GTCTAACTTTGTTTTAGTCA+AGG + tig0022248:12744-12763 None:intergenic 30.0%
TGATGCATGTTTAACATAAG+TGG - tig0022248:12805-12824 Msa1398310:intron 30.0%
!! CTATTTTGGAAGAAGCATAT+GGG - tig0022248:12892-12911 Msa1398310:intron 30.0%
!! GTTTGGTTTCTTTTTGTGTA+TGG + tig0022248:12934-12953 None:intergenic 30.0%
!! CTTTGATTTTCGAAGAAAAG+AGG + tig0022248:13140-13159 None:intergenic 30.0%
! CTCTTTTCTTCGAAAATCAA+AGG - tig0022248:13138-13157 Msa1398310:intron 30.0%
CAGACATCAATTTCGATTTA+GGG - tig0022248:13223-13242 Msa1398310:intron 30.0%
GTAAATAGGGTTTGCAATTA+GGG + tig0022248:13262-13281 None:intergenic 30.0%
TGTAAATAGGGTTTGCAATT+AGG + tig0022248:13263-13282 None:intergenic 30.0%
ATTACCAAGAGTTTCATATG+GGG + tig0022248:13408-13427 None:intergenic 30.0%
!!! CTTTCAAGTTTGTTCCTTTT+TGG - tig0022248:13433-13452 Msa1398310:CDS 30.0%
!! GTTCCTTTTTGGAAAAATTG+GGG - tig0022248:13444-13463 Msa1398310:CDS 30.0%
GAAGAAGAAGTTAATGTGTT+TGG - tig0022248:13630-13649 Msa1398310:intron 30.0%
GTTTGTTCTTCAATTGTGTA+TGG - tig0022248:13755-13774 Msa1398310:CDS 30.0%
AAAGATTGCTTATAGACGTT+TGG - tig0022248:13820-13839 Msa1398310:CDS 30.0%
TTTACTCTTCAAGTCTATGA+TGG - tig0022248:14385-14404 Msa1398310:intron 30.0%
GTGGTTATCAATAGTTAACT+AGG - tig0022248:14555-14574 Msa1398310:intron 30.0%
!!! CTTTTTTTAATCGTTTACGC+AGG - tig0022248:14580-14599 Msa1398310:CDS 30.0%
! ATTTTTACATTGCACAAGTC+AGG - tig0022248:14629-14648 Msa1398310:intron 30.0%
AAGTCAGGAACTTGATATAT+GGG - tig0022248:14644-14663 Msa1398310:intron 30.0%
GTCATTTATTGAAGTTCATC+AGG + tig0022248:14951-14970 None:intergenic 30.0%
!! CTTGAAAGTATTTCCATTTC+AGG + tig0022248:15051-15070 None:intergenic 30.0%
CAAAAATTTACATCCATCAC+TGG + tig0022248:15113-15132 None:intergenic 30.0%
! AACGAAAAGCTTTTAATCAG+CGG - tig0022248:15229-15248 Msa1398310:intron 30.0%
TGATATGGCAATTTATGCTT+GGG - tig0022248:15254-15273 Msa1398310:CDS 30.0%
!! TTTCTCGTTCAAAGGTATTA+GGG - tig0022248:15319-15338 Msa1398310:CDS 30.0%
ATATGTTGTCAGTTAACTGT+AGG - tig0022248:15351-15370 Msa1398310:CDS 30.0%
ACTAAATGATTGTATCACCT+TGG - tig0022248:15374-15393 Msa1398310:exon 30.0%
TCTCCCTACAAATAAAGTTA+TGG - tig0022248:15400-15419 Msa1398310:five_prime_UTR 30.0%
! CTGACCATAACTTTATTTGT+AGG + tig0022248:15407-15426 None:intergenic 30.0%
ACTTCCAATATTGAGTGATT+CGG - tig0022248:15439-15458 Msa1398310:intron 30.0%
!!! GTTGTTTTTCACCAAAGAAT+AGG - tig0022248:15504-15523 Msa1398310:intron 30.0%
!! GGAAGTATTTATGAAATCTC+AGG - tig0022248:15604-15623 Msa1398310:intron 30.0%
AGAATCTTCCTATATTCATC+TGG + tig0022248:15635-15654 None:intergenic 30.0%
AGATGAATATAGGAAGATTC+TGG - tig0022248:15634-15653 Msa1398310:intron 30.0%
! TATAAGTGTGTGCCTTTTAA+GGG + tig0022248:15699-15718 None:intergenic 30.0%
GAGAGATATAATGCGAAAAA+AGG - tig0022248:15727-15746 Msa1398310:intron 30.0%
GAAGAAATGAAGAAGACTAT+CGG - tig0022248:15755-15774 Msa1398310:intron 30.0%
TGGATCAACATATTAGTTAC+TGG + tig0022248:15866-15885 None:intergenic 30.0%
TGAGTGTGGTTGTTTATTTC+TGG - tig0022248:9241-9260 Msa1398310:CDS 35.0%
GAGACCATAAGTCTATTGTT+TGG - tig0022248:9555-9574 Msa1398310:intron 35.0%
AGAGTCTGACTCATTTAATG+TGG - tig0022248:9857-9876 Msa1398310:intron 35.0%
! TCAACCGTTTTACACAACAA+AGG + tig0022248:10206-10225 None:intergenic 35.0%
! TTTGTTGTGTAAAACGGTTG+AGG - tig0022248:10205-10224 Msa1398310:intron 35.0%
GGTTGAGGAAATGAAAATTG+AGG - tig0022248:10220-10239 Msa1398310:intron 35.0%
ACATATGCTTGATATTGTGC+AGG - tig0022248:10380-10399 Msa1398310:intron 35.0%
!! GCCTTAGATACCAGTTTTAT+GGG - tig0022248:10610-10629 Msa1398310:CDS 35.0%
TCCCATAAAACTGGTATCTA+AGG + tig0022248:10614-10633 None:intergenic 35.0%
TTCAGATGATCCCATAAAAC+TGG + tig0022248:10623-10642 None:intergenic 35.0%
! TCATCTGAAACAATTAACCC+AGG - tig0022248:10634-10653 Msa1398310:intron 35.0%
GATATCAAGAATCACAAACC+TGG + tig0022248:10655-10674 None:intergenic 35.0%
ATCTTTGTGTTCTGTTAACC+AGG - tig0022248:10711-10730 Msa1398310:intron 35.0%
TCTTTGTGTTCTGTTAACCA+GGG - tig0022248:10712-10731 Msa1398310:intron 35.0%
GAGTGTCTTGAATCATTACT+CGG - tig0022248:10854-10873 Msa1398310:intron 35.0%
ACAAGGACTAAATAAACTCC+AGG - tig0022248:11197-11216 Msa1398310:CDS 35.0%
!! CCATGATTTGCTGCATTTAA+TGG + tig0022248:11252-11271 None:intergenic 35.0%
CCATTAAATGCAGCAAATCA+TGG - tig0022248:11249-11268 Msa1398310:CDS 35.0%
AGCAAATCATGGAATTCAGA+TGG - tig0022248:11260-11279 Msa1398310:CDS 35.0%
!! TTTCTTGGTGTTACATTACC+TGG + tig0022248:11329-11348 None:intergenic 35.0%
! TAGACCCTTCCTCATTATTT+TGG - tig0022248:11415-11434 Msa1398310:intron 35.0%
! AGACCCTTCCTCATTATTTT+GGG - tig0022248:11416-11435 Msa1398310:intron 35.0%
CATCCCAAAATAATGAGGAA+GGG + tig0022248:11422-11441 None:intergenic 35.0%
TCATCCCAAAATAATGAGGA+AGG + tig0022248:11423-11442 None:intergenic 35.0%
ACTGTCATCCCAAAATAATG+AGG + tig0022248:11427-11446 None:intergenic 35.0%
AGTAATCCTAGGTGATATCT+TGG + tig0022248:11687-11706 None:intergenic 35.0%
! GAAGTGTCAACATAAATGAC+GGG - tig0022248:12387-12406 Msa1398310:intron 35.0%
TGTTATCAGGTTTCCGTTAT+CGG + tig0022248:12417-12436 None:intergenic 35.0%
TGATACCATCTTAGAAATCG+TGG - tig0022248:12477-12496 Msa1398310:intron 35.0%
TAAAACAAAAGACGTCGTTG+CGG + tig0022248:12657-12676 None:intergenic 35.0%
AAACATGCATCAAGATCACA+AGG + tig0022248:12797-12816 None:intergenic 35.0%
!! GCTATTTTGGAAGAAGCATA+TGG - tig0022248:12891-12910 Msa1398310:intron 35.0%
GCAGACATCAATTTCGATTT+AGG - tig0022248:13222-13241 Msa1398310:intron 35.0%
!! TTCGATTTAGGGCTTCATTT+TGG - tig0022248:13234-13253 Msa1398310:intron 35.0%
AACCATGGGGATTGTAAATA+GGG + tig0022248:13275-13294 None:intergenic 35.0%
TAACCATGGGGATTGTAAAT+AGG + tig0022248:13276-13295 None:intergenic 35.0%
CCATGTAGAATATAACCATG+GGG + tig0022248:13288-13307 None:intergenic 35.0%
GCCATGTAGAATATAACCAT+GGG + tig0022248:13289-13308 None:intergenic 35.0%
AGCCATGTAGAATATAACCA+TGG + tig0022248:13290-13309 None:intergenic 35.0%
TGGTTATATTCTACATGGCT+TGG - tig0022248:13290-13309 Msa1398310:intron 35.0%
AAAACCCCATATGAAACTCT+TGG - tig0022248:13401-13420 Msa1398310:CDS 35.0%
! TCTCCCCAATTTTTCCAAAA+AGG + tig0022248:13450-13469 None:intergenic 35.0%
TAAGTATGGTTGTGTGATGT+TGG - tig0022248:13672-13691 Msa1398310:intron 35.0%
!!! GTGATGTTGGTGTTTTTTGT+AGG - tig0022248:13685-13704 Msa1398310:intron 35.0%
! GCGAAATTTTATCATCCAGA+TGG - tig0022248:13842-13861 Msa1398310:CDS 35.0%
ATAGAATGAGGTCATCACAA+CGG + tig0022248:13925-13944 None:intergenic 35.0%
TTGTAGAACGAACATGCTTA+TGG + tig0022248:14076-14095 None:intergenic 35.0%
TAAGTTGTATGGCTGATAGT+TGG + tig0022248:14126-14145 None:intergenic 35.0%
CAATCAGACACTAAGTTGTA+TGG + tig0022248:14137-14156 None:intergenic 35.0%
CATACAACTTAGTGTCTGAT+TGG - tig0022248:14135-14154 Msa1398310:CDS 35.0%
GACTTGAAGAGTAAAGTAGA+AGG + tig0022248:14380-14399 None:intergenic 35.0%
AATTGCTTATAGATGCAGAG+AGG - tig0022248:14473-14492 Msa1398310:intron 35.0%
CAAGTCAGGAACTTGATATA+TGG - tig0022248:14643-14662 Msa1398310:intron 35.0%
! AGTTGCAAAGACTTGTTTCA+GGG + tig0022248:14717-14736 None:intergenic 35.0%
! AAGTTGCAAAGACTTGTTTC+AGG + tig0022248:14718-14737 None:intergenic 35.0%
CATATCTCTTTCCTTTCTAC+AGG + tig0022248:14885-14904 None:intergenic 35.0%
! ATAATTCAAAGCGTCTTCTG+TGG + tig0022248:14992-15011 None:intergenic 35.0%
ACTATCCACTCTTATATCTG+TGG - tig0022248:15014-15033 Msa1398310:intron 35.0%
! ACGAAAAGCTTTTAATCAGC+GGG - tig0022248:15230-15249 Msa1398310:intron 35.0%
GTGATATGGCAATTTATGCT+TGG - tig0022248:15253-15272 Msa1398310:CDS 35.0%
!! CTTTCTCGTTCAAAGGTATT+AGG - tig0022248:15318-15337 Msa1398310:CDS 35.0%
TATTTGTAGGGAGAAAACCA+AGG + tig0022248:15394-15413 None:intergenic 35.0%
TCTTCCGAATCACTCAATAT+TGG + tig0022248:15446-15465 None:intergenic 35.0%
TGATGTTTATCTGTGAAGCT+AGG + tig0022248:15478-15497 None:intergenic 35.0%
! TTTTCCAACACCCTATTCTT+TGG + tig0022248:15518-15537 None:intergenic 35.0%
!! AAATAGCATATGGTTCTGAG+AGG + tig0022248:15564-15583 None:intergenic 35.0%
! AGGTTGATCCAGATGAATAT+AGG - tig0022248:15624-15643 Msa1398310:intron 35.0%
ATTTCAGCAGTACCCTTAAA+AGG - tig0022248:15684-15703 Msa1398310:intron 35.0%
! GTATAAGTGTGTGCCTTTTA+AGG + tig0022248:15700-15719 None:intergenic 35.0%
GAAGGGAAACATTATGGTAT+TGG + tig0022248:15886-15905 None:intergenic 35.0%
TACCATAATGTTTCCCTTCA+TGG - tig0022248:15887-15906 Msa1398310:intron 35.0%
ATCCATGAAGGGAAACATTA+TGG + tig0022248:15892-15911 None:intergenic 35.0%
AGAATAGTCAGATCCATGAA+GGG + tig0022248:15903-15922 None:intergenic 35.0%
AAGAATAGTCAGATCCATGA+AGG + tig0022248:15904-15923 None:intergenic 35.0%
TCTTTGCAATTAGGGTCATT+TGG - tig0022248:15997-16016 Msa1398310:five_prime_UTR 35.0%
AGCTTATTTGAGCAGAAGCT+TGG - tig0022248:9213-9232 Msa1398310:CDS 40.0%
ATTCCAGCAAGTTAGCATGT+GGG - tig0022248:9684-9703 Msa1398310:intron 40.0%
!! GGTGACAGCTTTAAAGTTGA+AGG - tig0022248:9706-9725 Msa1398310:intron 40.0%
!! GACAGCTTTAAAGTTGAAGG+TGG - tig0022248:9709-9728 Msa1398310:intron 40.0%
GAACAGTAACACTACTAGCA+TGG - tig0022248:9765-9784 Msa1398310:CDS 40.0%
GTGTCTGTGACATTATGTGT+AGG - tig0022248:10081-10100 Msa1398310:intron 40.0%
! ATATTACCTTTTTGCGCTCC+CGG + tig0022248:10150-10169 None:intergenic 40.0%
CAGATTGAAGCTCATGCAAT+TGG - tig0022248:10428-10447 Msa1398310:intron 40.0%
! CGCCTTAGATACCAGTTTTA+TGG - tig0022248:10609-10628 Msa1398310:CDS 40.0%
ATTTCAAACGCAACAATCCC+TGG + tig0022248:10732-10751 None:intergenic 40.0%
AATGAAAACGGATGCTGCAA+AGG - tig0022248:10887-10906 Msa1398310:intron 40.0%
GATCCCCTCTATTTAATCTC+CGG - tig0022248:10912-10931 Msa1398310:intron 40.0%
ACACCGGAGATTAAATAGAG+GGG + tig0022248:10918-10937 None:intergenic 40.0%
CACACCGGAGATTAAATAGA+GGG + tig0022248:10919-10938 None:intergenic 40.0%
ACACACCGGAGATTAAATAG+AGG + tig0022248:10920-10939 None:intergenic 40.0%
TCTATTTAATCTCCGGTGTG+TGG - tig0022248:10919-10938 Msa1398310:intron 40.0%
!! TCCTTGTGAAAGAGCATCTT+CGG + tig0022248:11184-11203 None:intergenic 40.0%
AAATAAACTCCAGGAGAGTC+TGG - tig0022248:11206-11225 Msa1398310:CDS 40.0%
ATGGAACAAATGCCATGTCT+TGG + tig0022248:11233-11252 None:intergenic 40.0%
!! ACTCGAAGGTTTTGTAATCC+AGG - tig0022248:11308-11327 Msa1398310:CDS 40.0%
GGTGATATCTTGGAATCGAA+TGG + tig0022248:11677-11696 None:intergenic 40.0%
TCGATTCCAAGATATCACCT+AGG - tig0022248:11678-11697 Msa1398310:CDS 40.0%
! TTCCTCTAAGGAGTAATCCT+AGG + tig0022248:11698-11717 None:intergenic 40.0%
AAGCATCATAAGCAGGTATC+CGG + tig0022248:11724-11743 None:intergenic 40.0%
GAAACTCAAGCATCATAAGC+AGG + tig0022248:11731-11750 None:intergenic 40.0%
CATCATCTGATCTTGTCTAC+CGG + tig0022248:12090-12109 None:intergenic 40.0%
!!! GTTTTGAAATAGCGTCCTGA+CGG + tig0022248:12203-12222 None:intergenic 40.0%
! TTAAGAGTCTCACATCGGTT+AGG + tig0022248:12336-12355 None:intergenic 40.0%
GTGTGTTAAGAGTCTCACAT+CGG + tig0022248:12341-12360 None:intergenic 40.0%
ATGTCTAATTCTGAGCGTGA+GGG + tig0022248:12365-12384 None:intergenic 40.0%
GTTATCAGGTTTCCGTTATC+GGG + tig0022248:12416-12435 None:intergenic 40.0%
!! GATAACGGAAACCTGATAAC+AGG - tig0022248:12416-12435 Msa1398310:intron 40.0%
CGATTCTCTTCACGATTCTT+TGG + tig0022248:12446-12465 None:intergenic 40.0%
ACCATCTTAGAAATCGTGGT+TGG - tig0022248:12481-12500 Msa1398310:intron 40.0%
CCATCTTAGAAATCGTGGTT+GGG - tig0022248:12482-12501 Msa1398310:intron 40.0%
AACCCTATTTACAATCCCCA+TGG - tig0022248:13270-13289 Msa1398310:intron 40.0%
CCCCATGGTTATATTCTACA+TGG - tig0022248:13285-13304 Msa1398310:intron 40.0%
!! TTCTACATGGCTTGGTTCTT+CGG - tig0022248:13298-13317 Msa1398310:intron 40.0%
GTATGGTGAAACAACAGAAC+TGG - tig0022248:13772-13791 Msa1398310:CDS 40.0%
AGATTAAGACGCATACCATC+TGG + tig0022248:13860-13879 None:intergenic 40.0%
! GGAAAGAACAATTTTCACGG+TGG - tig0022248:14156-14175 Msa1398310:CDS 40.0%
TTAGATAACTCTCGGAGCTT+CGG - tig0022248:14223-14242 Msa1398310:CDS 40.0%
! CTTCAAGTCTATGATGGAAG+AGG - tig0022248:14391-14410 Msa1398310:CDS 40.0%
GAGGCGGAAAAAATATGACA+CGG - tig0022248:14492-14511 Msa1398310:intron 40.0%
AAAATATGACACGGCTAACC+AGG - tig0022248:14501-14520 Msa1398310:intron 40.0%
AAAATCGATACGACCAGTGA+TGG - tig0022248:15097-15116 Msa1398310:CDS 40.0%
! ATTGATGTGCTGTGTCATTC+AGG - tig0022248:15173-15192 Msa1398310:intron 40.0%
! CGAAAAGCTTTTAATCAGCG+GGG - tig0022248:15231-15250 Msa1398310:intron 40.0%
! TTTTAATCAGCGGGGTGATA+TGG - tig0022248:15239-15258 Msa1398310:intron 40.0%
TCGTCAACTTTCTCGTTCAA+AGG - tig0022248:15311-15330 Msa1398310:CDS 40.0%
TTCACCAAAGAATAGGGTGT+TGG - tig0022248:15511-15530 Msa1398310:intron 40.0%
CAAGGGGGAAAAATAGCATA+TGG + tig0022248:15574-15593 None:intergenic 40.0%
TACTTCCCAGTCATTTGCAA+GGG + tig0022248:15591-15610 None:intergenic 40.0%
ATACTTCCCAGTCATTTGCA+AGG + tig0022248:15592-15611 None:intergenic 40.0%
GATTCTGGCAAGAGAAAAGA+AGG - tig0022248:15649-15668 Msa1398310:intron 40.0%
! TGAGCTTGATGATAGTGAAG+AGG - tig0022248:15802-15821 Msa1398310:intron 40.0%
AATTATAGTGAACGCGAGAC+TGG - tig0022248:15825-15844 Msa1398310:intron 40.0%
ATTATAGTGAACGCGAGACT+GGG - tig0022248:15826-15845 Msa1398310:intron 40.0%
AATTAGGGTCATTTGGACTG+AGG - tig0022248:16004-16023 Msa1398310:five_prime_UTR 40.0%
!! CACATGCTAACTTGCTGGAA+TGG + tig0022248:9685-9704 None:intergenic 45.0%
CATTCCAGCAAGTTAGCATG+TGG - tig0022248:9683-9702 Msa1398310:intron 45.0%
TTCCAGCAAGTTAGCATGTG+GGG - tig0022248:9685-9704 Msa1398310:intron 45.0%
CACTACTAGCATGGAGAACA+AGG - tig0022248:9774-9793 Msa1398310:CDS 45.0%
GAATGATCCCTTGGTTCATG+AGG + tig0022248:9937-9956 None:intergenic 45.0%
TCAGCTTCTGAATGATCCCT+TGG + tig0022248:9946-9965 None:intergenic 45.0%
ATGCAATTGGAGCTGGAGAT+TGG - tig0022248:10441-10460 Msa1398310:intron 45.0%
TGCAATTGGAGCTGGAGATT+GGG - tig0022248:10442-10461 Msa1398310:intron 45.0%
! TAGTTGCAGGGTATTTGCAC+AGG - tig0022248:10583-10602 Msa1398310:CDS 45.0%
!! ATTGGGTTGACGAGAACCAT+AGG - tig0022248:10763-10782 Msa1398310:intron 45.0%
ATCCTCCGATCCATAGGAAA+AGG + tig0022248:10962-10981 None:intergenic 45.0%
! TCAGACAAAGGCTCAAGTTG+TGG + tig0022248:11114-11133 None:intergenic 45.0%
GACAAATTTGAGGGACTCGA+AGG - tig0022248:11294-11313 Msa1398310:CDS 45.0%
! GAATGGTTTGTGTTGTCGAC+AGG - tig0022248:11517-11536 Msa1398310:intron 45.0%
CACCTAGGATTACTCCTTAG+AGG - tig0022248:11693-11712 Msa1398310:CDS 45.0%
TTACTCCTTAGAGGAAGAGC+CGG - tig0022248:11702-11721 Msa1398310:CDS 45.0%
TAATGCTGTGTAGCAGCAAG+AGG - tig0022248:11814-11833 Msa1398310:intron 45.0%
TTCAAATGGGACACTGTGAC+CGG - tig0022248:12068-12087 Msa1398310:intron 45.0%
! CGATTTCTAAGAGAGGTCGA+TGG + tig0022248:12231-12250 None:intergenic 45.0%
TCGACCTCTCTTAGAAATCG+TGG - tig0022248:12231-12250 Msa1398310:intron 45.0%
! CCAACCACGATTTCTAAGAG+AGG + tig0022248:12238-12257 None:intergenic 45.0%
CCTCTCTTAGAAATCGTGGT+TGG - tig0022248:12235-12254 Msa1398310:intron 45.0%
CTAACACTACCCCACAAAAC+CGG - tig0022248:12260-12279 Msa1398310:intron 45.0%
TGTCTAATTCTGAGCGTGAG+GGG + tig0022248:12364-12383 None:intergenic 45.0%
GATGTCTAATTCTGAGCGTG+AGG + tig0022248:12366-12385 None:intergenic 45.0%
! GTGTCAACATAAATGACGGG+TGG - tig0022248:12390-12409 Msa1398310:intron 45.0%
AACGGAAACCTGATAACAGG+TGG - tig0022248:12419-12438 Msa1398310:intron 45.0%
TCTTTGGACCACCTGTTATC+AGG + tig0022248:12430-12449 None:intergenic 45.0%
TCGTGAAGAGAATCGTGAAG+AGG - tig0022248:12451-12470 Msa1398310:intron 45.0%
! CCCAACCACGATTTCTAAGA+TGG + tig0022248:12485-12504 None:intergenic 45.0%
CTAACACAACCCCACAAAAC+CGG - tig0022248:12506-12525 Msa1398310:intron 45.0%
! TTAAGAGTCCCACATCGGTT+AGG + tig0022248:12582-12601 None:intergenic 45.0%
GGTTGTTAAGAGTCCCACAT+CGG + tig0022248:12587-12606 None:intergenic 45.0%
CGGGAAATTTGTGGTCAGTT+TGG + tig0022248:12951-12970 None:intergenic 45.0%
ATTCGATCAGACCCATGCTT+CGG - tig0022248:13324-13343 Msa1398310:intron 45.0%
CCACAGTTCTCTTCTGATTG+AGG + tig0022248:13355-13374 None:intergenic 45.0%
CCTCAATCAGAAGAGAACTG+TGG - tig0022248:13352-13371 Msa1398310:intron 45.0%
TGTGGCGAAAGCAACGAATT+GGG - tig0022248:13370-13389 Msa1398310:intron 45.0%
GGTGAAACAACAGAACTGGA+AGG - tig0022248:13776-13795 Msa1398310:CDS 45.0%
AACCCTTGAGGAAGGTGAAA+CGG - tig0022248:14414-14433 Msa1398310:CDS 45.0%
TGCTTATAGATGCAGAGAGG+CGG - tig0022248:14476-14495 Msa1398310:intron 45.0%
TAACCAGGTCAACCCTATGA+AGG - tig0022248:14516-14535 Msa1398310:intron 45.0%
TTACCTTCATAGGGTTGACC+TGG + tig0022248:14522-14541 None:intergenic 45.0%
TCTCCTTCTACGTTTCAAGC+TGG - tig0022248:14764-14783 Msa1398310:intron 45.0%
TGACCAGCTTGAAACGTAGA+AGG + tig0022248:14770-14789 None:intergenic 45.0%
CACAGCCACAGATATAAGAG+TGG + tig0022248:15022-15041 None:intergenic 45.0%
TCATTCAGGCATCTCAAGCA+TGG - tig0022248:15187-15206 Msa1398310:intron 45.0%
! GAGTGATTCGGAAGAATCCA+TGG - tig0022248:15451-15470 Msa1398310:intron 45.0%
TATCTGTGAAGCTAGGACCA+TGG + tig0022248:15471-15490 None:intergenic 45.0%
! TTTTCCCCCTTGCAAATGAC+TGG - tig0022248:15582-15601 Msa1398310:intron 45.0%
TTTCCCCCTTGCAAATGACT+GGG - tig0022248:15583-15602 Msa1398310:intron 45.0%
ACTTCCCAGTCATTTGCAAG+GGG + tig0022248:15590-15609 None:intergenic 45.0%
ATCAAGCTCAAGACCTTCTG+CGG + tig0022248:15792-15811 None:intergenic 45.0%
!! TTGAATATATATATATATAA+TGG + tig0022248:9028-9047 None:intergenic 5.0%
GAAGCTTGGTCTCATGAGTG+TGG - tig0022248:9227-9246 Msa1398310:CDS 50.0%
GAGAGGCTGCTAAGAAAAGC+CGG - tig0022248:10128-10147 Msa1398310:intron 50.0%
AGAGGCTGCTAAGAAAAGCC+GGG - tig0022248:10129-10148 Msa1398310:intron 50.0%
GAAGCTCATGCAATTGGAGC+TGG - tig0022248:10434-10453 Msa1398310:intron 50.0%
GATTGGGAGAGCAAGAAAGC+AGG - tig0022248:10458-10477 Msa1398310:intron 50.0%
AACCAGACGAAGCTGCACTT+CGG + tig0022248:10829-10848 None:intergenic 50.0%
TACGGATGGTTTCCACACAC+CGG + tig0022248:10934-10953 None:intergenic 50.0%
!! CCATAGGAAAAGGCGCTCTA+CGG + tig0022248:10952-10971 None:intergenic 50.0%
! GAGCGCCTTTTCCTATGGAT+CGG - tig0022248:10954-10973 Msa1398310:intron 50.0%
GTTGTGGCACAATGAGCTGT+AGG + tig0022248:11098-11117 None:intergenic 50.0%
GCCGAAGATGCTCTTTCACA+AGG - tig0022248:11180-11199 Msa1398310:CDS 50.0%
TTGGTGTGTAGACAGGATGC+GGG + tig0022248:11579-11598 None:intergenic 50.0%
! CTTGGTGTGTAGACAGGATG+CGG + tig0022248:11580-11599 None:intergenic 50.0%
! TAGCACCTTGGTGTGTAGAC+AGG + tig0022248:11586-11605 None:intergenic 50.0%
! TGTCTACACACCAAGGTGCT+AGG - tig0022248:11585-11604 Msa1398310:intron 50.0%
! GTCTACACACCAAGGTGCTA+GGG - tig0022248:11586-11605 Msa1398310:intron 50.0%
! TCTACACACCAAGGTGCTAG+GGG - tig0022248:11587-11606 Msa1398310:intron 50.0%
CTAGGGGCTTGATTGCTCTT+GGG - tig0022248:11603-11622 Msa1398310:intron 50.0%
TAGGGGCTTGATTGCTCTTG+GGG - tig0022248:11604-11623 Msa1398310:intron 50.0%
! TTGTTTTCTTAGCCGCCGTC+AGG - tig0022248:12185-12204 Msa1398310:intron 50.0%
TTGAAATAGCGTCCTGACGG+CGG + tig0022248:12200-12219 None:intergenic 50.0%
CTAAGAGAGGTCGATGGTGA+TGG + tig0022248:12225-12244 None:intergenic 50.0%
!! CGGTTTTGTGGGGTAGTGTT+AGG + tig0022248:12262-12281 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + tig0022248:12273-12292 None:intergenic 50.0%
! GTCTCACATCGGTTAGGAGT+TGG + tig0022248:12330-12349 None:intergenic 50.0%
GTCTAATTCTGAGCGTGAGG+GGG + tig0022248:12363-12382 None:intergenic 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG + tig0022248:12508-12527 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + tig0022248:12273-12292 None:intergenic 50.0%
TTGAGGCGAAACCGAAGCAT+GGG + tig0022248:13338-13357 None:intergenic 50.0%
ATTGAGGCGAAACCGAAGCA+TGG + tig0022248:13339-13358 None:intergenic 50.0%
CTGTGGCGAAAGCAACGAAT+TGG - tig0022248:13369-13388 Msa1398310:intron 50.0%
TGATGGAAGAGGAACCCTTG+AGG - tig0022248:14402-14421 Msa1398310:CDS 50.0%
! TGCCGTTTCACCTTCCTCAA+GGG + tig0022248:14419-14438 None:intergenic 50.0%
AAGGTGAAACGGCAGAAGCT+AGG - tig0022248:14425-14444 Msa1398310:CDS 50.0%
GGCTGTGATACAGCCTGAAA+TGG - tig0022248:15035-15054 Msa1398310:intron 50.0%
TCAGGCATCTCAAGCATGGA+TGG - tig0022248:15191-15210 Msa1398310:intron 50.0%
CATCTCAAGCATGGATGGAG+TGG - tig0022248:15196-15215 Msa1398310:intron 50.0%
CTTCCCAGTCATTTGCAAGG+GGG + tig0022248:15589-15608 None:intergenic 50.0%
! CACCCCACATGCTAACTTGC+TGG + tig0022248:9690-9709 None:intergenic 55.0%
ACGCCTCTCACAGAATCGAG+AGG - tig0022248:10111-10130 Msa1398310:intron 55.0%
CAGCCTCTCGATTCTGTGAG+AGG + tig0022248:10117-10136 None:intergenic 55.0%
! GAAAAGCCGGGAGCGCAAAA+AGG - tig0022248:10141-10160 Msa1398310:intron 55.0%
GGGTTGACGAGAACCATAGG+CGG - tig0022248:10766-10785 Msa1398310:intron 55.0%
TGAGCTCTTCGTTCCGCCTA+TGG + tig0022248:10782-10801 None:intergenic 55.0%
!! AGGAAAAGGCGCTCTACGGA+TGG + tig0022248:10948-10967 None:intergenic 55.0%
!! CCGTAGAGCGCCTTTTCCTA+TGG - tig0022248:10949-10968 Msa1398310:intron 55.0%
! CGCCTTTTCCTATGGATCGG+AGG - tig0022248:10957-10976 Msa1398310:intron 55.0%
GTGGCACAATGAGCTGTAGG+AGG + tig0022248:11095-11114 None:intergenic 55.0%
TGTCTTGGACCAGACTCTCC+TGG + tig0022248:11218-11237 None:intergenic 55.0%
GGAGAGTCTGGTCCAAGACA+TGG - tig0022248:11218-11237 Msa1398310:CDS 55.0%
GTCGACAGGCAGATCATCTC+AGG - tig0022248:11531-11550 Msa1398310:intron 55.0%
CGCATCCTGTCTACACACCA+AGG - tig0022248:11578-11597 Msa1398310:intron 55.0%
CAATCAAGCCCCTAGCACCT+TGG + tig0022248:11598-11617 None:intergenic 55.0%
GCTAGGGGCTTGATTGCTCT+TGG - tig0022248:11602-11621 Msa1398310:intron 55.0%
GGTATCCGGCTCTTCCTCTA+AGG + tig0022248:11710-11729 None:intergenic 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + tig0022248:12272-12291 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + tig0022248:12274-12293 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - tig0022248:12274-12293 Msa1398310:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG + tig0022248:12282-12301 None:intergenic 55.0%
!! AATGACGGGTGGCCCGATAA+CGG - tig0022248:12401-12420 Msa1398310:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + tig0022248:12272-12291 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + tig0022248:12274-12293 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - tig0022248:12274-12293 Msa1398310:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG + tig0022248:12282-12301 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG - tig0022248:12324-12343 Msa1398310:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG - tig0022248:12325-12344 Msa1398310:intron 55.0%
! GTCCCACATCGGTTAGGAGT+TGG + tig0022248:12576-12595 None:intergenic 55.0%
GGAAGAGGAACCCTTGAGGA+AGG - tig0022248:14406-14425 Msa1398310:CDS 55.0%
! CTGCCGTTTCACCTTCCTCA+AGG + tig0022248:14420-14439 None:intergenic 55.0%
GGACATCTCTTAGCCGCAGA+AGG - tig0022248:15776-15795 Msa1398310:intron 55.0%
GTCCGAAGTGCAGCTTCGTC+TGG - tig0022248:10824-10843 Msa1398310:intron 60.0%
GGCGAGATCCTCCGATCCAT+AGG + tig0022248:10968-10987 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - tig0022248:12269-12288 Msa1398310:intron 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - tig0022248:12269-12288 Msa1398310:intron 60.0%
Chromosome Type Strat End Strand Name
tig0022248 gene 8972 16071 8972 ID=Msa1398310;Name=Msa1398310
tig0022248 mRNA 8972 16071 8972 ID=Msa1398310-mRNA-1;Parent=Msa1398310;Name=Msa1398310-mRNA-1;_AED=0.21;_eAED=0.21;_QI=211|0.68|0.70|0.88|0.87|0.76|17|214|667
tig0022248 exon 8972 9066 8972 ID=Msa1398310-mRNA-1:exon:16591;Parent=Msa1398310-mRNA-1
tig0022248 exon 9092 9417 9092 ID=Msa1398310-mRNA-1:exon:16590;Parent=Msa1398310-mRNA-1
tig0022248 exon 9711 9848 9711 ID=Msa1398310-mRNA-1:exon:16589;Parent=Msa1398310-mRNA-1
tig0022248 exon 9972 10048 9972 ID=Msa1398310-mRNA-1:exon:16588;Parent=Msa1398310-mRNA-1
tig0022248 exon 10258 10342 10258 ID=Msa1398310-mRNA-1:exon:16587;Parent=Msa1398310-mRNA-1
tig0022248 exon 10506 10645 10506 ID=Msa1398310-mRNA-1:exon:16586;Parent=Msa1398310-mRNA-1
tig0022248 exon 11180 11336 11180 ID=Msa1398310-mRNA-1:exon:16585;Parent=Msa1398310-mRNA-1
tig0022248 exon 11621 11817 11621 ID=Msa1398310-mRNA-1:exon:16584;Parent=Msa1398310-mRNA-1
tig0022248 exon 13399 13504 13399 ID=Msa1398310-mRNA-1:exon:16583;Parent=Msa1398310-mRNA-1
tig0022248 exon 13714 13941 13714 ID=Msa1398310-mRNA-1:exon:16582;Parent=Msa1398310-mRNA-1
tig0022248 exon 14039 14310 14039 ID=Msa1398310-mRNA-1:exon:16581;Parent=Msa1398310-mRNA-1
tig0022248 exon 14388 14451 14388 ID=Msa1398310-mRNA-1:exon:16580;Parent=Msa1398310-mRNA-1
tig0022248 exon 14564 14641 14564 ID=Msa1398310-mRNA-1:exon:16579;Parent=Msa1398310-mRNA-1
tig0022248 exon 14881 14940 14881 ID=Msa1398310-mRNA-1:exon:16578;Parent=Msa1398310-mRNA-1
tig0022248 exon 15056 15121 15056 ID=Msa1398310-mRNA-1:exon:16577;Parent=Msa1398310-mRNA-1
tig0022248 exon 15248 15419 15248 ID=Msa1398310-mRNA-1:exon:16576;Parent=Msa1398310-mRNA-1
tig0022248 exon 15904 16071 15904 ID=Msa1398310-mRNA-1:exon:16575;Parent=Msa1398310-mRNA-1
tig0022248 five_prime_UTR 15904 16071 15904 ID=Msa1398310-mRNA-1:five_prime_utr;Parent=Msa1398310-mRNA-1
tig0022248 five_prime_UTR 15377 15419 15377 ID=Msa1398310-mRNA-1:five_prime_utr;Parent=Msa1398310-mRNA-1
tig0022248 CDS 15248 15376 15248 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 15056 15121 15056 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 14881 14940 14881 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 14564 14641 14564 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 14388 14451 14388 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 14039 14310 14039 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 13714 13941 13714 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 13399 13504 13399 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 11621 11817 11621 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 11180 11336 11180 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 10506 10645 10506 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 10258 10342 10258 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 9972 10048 9972 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 9711 9848 9711 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 CDS 9211 9417 9211 ID=Msa1398310-mRNA-1:cds;Parent=Msa1398310-mRNA-1
tig0022248 three_prime_UTR 9092 9210 9092 ID=Msa1398310-mRNA-1:three_prime_utr;Parent=Msa1398310-mRNA-1
tig0022248 three_prime_UTR 8972 9066 8972 ID=Msa1398310-mRNA-1:three_prime_utr;Parent=Msa1398310-mRNA-1
Gene Sequence

>Msa1398310

ATGGATATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGTCTTAATTCAATTGCTTCTCCAATGTTACTAGTGAACAGTAACACTACTAGCATGGAGAACAAGTCTGAATATATTCCTCATGAACCAAGGGATCATTCAGAAGCTGAACAAGAGACTACAAACAATAAGGTACTTAGACGCCTCTCACAGAATCGAGAGGCTGCTAAGAAAAGCCGGGAGCGCAAAAAGGCTTATGTTAAACAATTAGAATCAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATTGGGAGAGCAAGAAAGCAGGGTATTTGCACAGGAAGCGCCTTAGATACCAGTTTTATGGGATCATCTGAAACAATTAACCCAGGGATTGTTGCGTTTGAAATTGAATACGGAAATTGGGTTGACGAGAACCATAGGCGGAACGAAGAGCTCAGAAATGCATTTCAAACTAATGCGTCCGAAGTGCAGCTTCGTCTGGTTGTTCAGAGTGTCTTGAATCATTACTCGGATCTTTTCAGAATGAAAACGGATGCTGCAAAGGCTGATCCCCTCTATTTAATCTCCGGTGTGTGGAAACCATCCGTAGAGCGCCTTTTCCTATGGATCGGAGGATCTCGCCCATCACAACTTCTAAATCTCATTGTGCCACAACTTGAGCCTTTGTCTGATGAACAAATGTTGAGCATTAAAAAACTTCATCTGTCGTCTCAGCAAGCCGAAGATGCTCTTTCACAAGGACTAAATAAACTCCAGGAGAGTCTGGTCCAAGACATGGCATTTGTTCCATTAAATGCAGCAAATCATGGAATTCAGATGGCTATTGCTATAGACAAATTTGAGGGACTCGAAGGTTTTGTAATCCAGGCAGATCATCTCAGGCAGCAAACTCTGATACACATGTCCCGCATCCTGTCTACACACCAAGGTGCTAGGGGCTTGATTGCTCTTGGGGAATACTTTCATCGTCTTCACATCAATTTCGATTTAGGGCTTCATTTTGGAACCCTAATTGCAAACCCTATTTACAATCCCCATGGTTATATTCTACATGGCTTGGTTCTTCGGTTAATTCGATCAGACCCATGCTTCGGTTTCGCCTCAATCAGAAGAGAACTGTGGCGAAAGCAACGAATTGGGATCAACAAAAAACCCCATATGAAACTCTTGGAAGACAATAGAGATGAAAATTTTGTGGATAATTGTTTTGTTTTGAATGTTTGTTCTTCAATTGTGTATGGTGAAACAACAGAACTGGAAGGAGATGCTAATGATGAGCAGATAAAGATTGCTTATAGACGTTTGGCGAAATTTTATCATCCAGATGTCTATGATGGAAGAGGAACCCTTGAGGAAGGTGAAACGGCAGAAGCTAGGTTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGCAGAGAGGCGGAAAAAATATGACACGGCTAACCAGGTCAACCCTATGAAGTATCAACTATCAACCCTGAAACAAGTCTTTGCAACTTATATAATTGATGAAGCTGTTTCAATTTCTCCTTCTACGTTTCAAGCTGAAGACGCTTTGAATTATTTACTATCCACTCTTATATCTGTGGCTGTGATACAGCCTGAAATGGAAATACTTTCAAGTGCATCTCAAGCATGGATGGAGTGGCTTATGAAAAAACGAAAAGCTTTTAATCAGCGGGGTGATATGGCAATTTATGCTTGGGCTGAGCAGCAGCAGCGCGAGTTGAATGTTCGTGCTCGTCAACTTTCTCGTTCAAAGGTTGATCCAGATGAATATAGGAAGATTCTGGCAAGAGAAAAGAAGGCTTCAGCTGAACATTTCAGCAGTACCCTTAAAAGGCACACACTTATACTGCAGAAGAGAGATATAATGCGAAAAAAGGCTGACGAAGAAATGAAGAAGACTATCGGACATCTCTTAGCCGCAGAAGGTCTTGAGCTTGATGATAGTGAAGAGGAATTATAG

Protein sequence

>Msa1398310

MDIYEPFQQVSMWGDSFKVEGGLNSIASPMLLVNSNTTSMENKSEYIPHEPRDHSEAEQETTNNKVLRRLSQNREAAKKSRERKKAYVKQLESSRLKLMQLELEIGRARKQGICTGSALDTSFMGSSETINPGIVAFEIEYGNWVDENHRRNEELRNAFQTNASEVQLRLVVQSVLNHYSDLFRMKTDAAKADPLYLISGVWKPSVERLFLWIGGSRPSQLLNLIVPQLEPLSDEQMLSIKKLHLSSQQAEDALSQGLNKLQESLVQDMAFVPLNAANHGIQMAIAIDKFEGLEGFVIQADHLRQQTLIHMSRILSTHQGARGLIALGEYFHRLHINFDLGLHFGTLIANPIYNPHGYILHGLVLRLIRSDPCFGFASIRRELWRKQRIGINKKPHMKLLEDNRDENFVDNCFVLNVCSSIVYGETTELEGDANDEQIKIAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDAERRKKYDTANQVNPMKYQLSTLKQVFATYIIDEAVSISPSTFQAEDALNYLLSTLISVAVIQPEMEILSSASQAWMEWLMKKRKAFNQRGDMAIYAWAEQQQRELNVRARQLSRSKVDPDEYRKILAREKKASAEHFSSTLKRHTLILQKRDIMRKKADEEMKKTIGHLLAAEGLELDDSEEEL*