AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475830 MtrunA17_Chr1g0204861 93.939 132 2 2 1 130 1 128 3.21e-85 246
Msa0475830 MtrunA17_Chr2g0305161 35.263 190 86 10 1 159 1 184 1.80e-13 65.1
Msa0475830 MtrunA17_Chr3g0121201 53.488 43 20 0 117 159 237 279 9.99e-13 64.7
Msa0475830 MtrunA17_Chr4g0041541 28.402 169 93 7 4 160 76 228 3.47e-12 62.8
Msa0475830 MtrunA17_Chr1g0207561 50.000 42 21 0 117 158 200 241 5.19e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475830 AT2G15580.1 37.398 123 56 3 49 159 79 192 9.93e-18 76.6
Msa0475830 AT1G55530.1 57.143 42 18 0 117 158 223 264 3.39e-12 63.5
Msa0475830 AT1G55530.2 57.143 42 18 0 117 158 223 264 3.39e-12 63.5
Msa0475830 AT1G55530.3 57.143 42 18 0 117 158 190 231 4.56e-12 63.2
Msa0475830 AT3G13430.4 57.143 42 18 0 117 158 225 266 6.87e-12 62.4
Msa0475830 AT3G13430.3 57.143 42 18 0 117 158 225 266 6.87e-12 62.4
Msa0475830 AT3G13430.1 57.143 42 18 0 117 158 225 266 6.87e-12 62.4
Msa0475830 AT3G13430.2 57.143 42 18 0 117 158 225 266 6.87e-12 62.4
Msa0475830 AT3G19950.1 23.077 156 114 3 7 158 104 257 1.15e-11 62.0
Msa0475830 AT3G19950.2 45.098 51 28 0 108 158 265 315 1.60e-11 61.6
Msa0475830 AT3G19950.3 45.098 51 28 0 108 158 265 315 1.60e-11 61.6
Msa0475830 AT5G56340.1 50.000 42 21 0 117 158 259 300 4.01e-11 60.5
Msa0475830 AT3G58720.2 44.000 50 28 0 111 160 166 215 6.24e-11 59.3
Msa0475830 AT3G58720.1 43.137 51 29 0 111 161 138 188 7.29e-11 58.9
Msa0475830 AT3G58720.4 43.137 51 29 0 111 161 158 208 8.10e-11 58.9
Msa0475830 AT1G35330.1 36.170 94 51 5 78 163 84 176 8.17e-11 59.3
Msa0475830 AT3G58720.3 44.000 50 28 0 111 160 166 215 8.28e-11 59.3
Msa0475830 AT4G26400.2 47.619 42 22 0 117 158 241 282 9.34e-11 59.3
Msa0475830 AT4G26400.1 47.619 42 22 0 117 158 241 282 9.34e-11 59.3

Find 53 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCATGTTAAAGTCTTTA+AGG 0.190882 3_3:-79310705 None:intergenic
CTAATCCTGCATCTTTCTTT+TGG 0.238953 3_3:-79310163 None:intergenic
TTGATGGTTGCGTGCTCTAC+TGG 0.300182 3_3:-79309182 None:intergenic
AAATTGACCCCTCTAAGTTT+TGG 0.342451 3_3:+79309117 Msa0475830:five_prime_UTR
TCATAACCTCTTCATCTTGC+TGG 0.345809 3_3:-79310274 None:intergenic
CAAAAGAAAGATGCAGGATT+AGG 0.351739 3_3:+79310164 Msa0475830:CDS
GTGCATCCAATGATTCCTTT+AGG 0.352281 3_3:-79309383 None:intergenic
TTGTTGAGATTAGTTAAAAC+AGG 0.360846 3_3:+79310432 Msa0475830:three_prime_UTR
CTCTTACCTAAAGGAATCAT+TGG 0.362848 3_3:+79309377 Msa0475830:CDS
TTGTAAATACCAAAACTTAG+AGG 0.364195 3_3:-79309126 None:intergenic
TTTGAAAGCAGTTTCATCTA+AGG 0.366099 3_3:-79309427 None:intergenic
TTTCTTCTGTAGGCGTTGTT+TGG 0.381475 3_3:-79309451 None:intergenic
AGTCATGCGTTTATCTACTA+TGG 0.381679 3_3:+79310562 Msa0475830:three_prime_UTR
CTCAGCAATAGTTCTACAAT+AGG 0.395188 3_3:-79310366 None:intergenic
AGAAGTTACTAGAAAGTTCA+TGG 0.406938 3_3:+79310189 Msa0475830:CDS
ATTCAGCATGTCTTCTCCCT+TGG 0.429232 3_3:+79310321 Msa0475830:CDS
GATACTTATGTGAGCAAGAA+AGG 0.444102 3_3:-79310298 None:intergenic
CGTTTATCTACTATGGCTAG+TGG 0.467021 3_3:+79310569 Msa0475830:three_prime_UTR
TGTAAATACCAAAACTTAGA+GGG 0.475798 3_3:-79309125 None:intergenic
AAGACTTTAACATGCATGCC+TGG 0.482144 3_3:+79310710 Msa0475830:three_prime_UTR
CAACGCCTACAGAAGAAACT+TGG 0.500663 3_3:+79309456 Msa0475830:CDS
GCTGGTAGGCTACCTGGTGT+TGG 0.511550 3_3:+79309288 Msa0475830:CDS
CTTAGGTAAAGAAGAGTGAA+TGG 0.513291 3_3:+79309266 Msa0475830:exon
TGAATGGCTGGTAGGCTACC+TGG 0.514647 3_3:+79309282 Msa0475830:exon
AGCTTCCAAAAGAAAGATGC+AGG 0.517931 3_3:+79310158 Msa0475830:CDS
GGATTTGATGTACCTGGAAG+AGG 0.518796 3_3:-79309490 None:intergenic
TCAGCAATAGTTCTACAATA+GGG 0.519595 3_3:-79310365 None:intergenic
GGTAAAGAAGAGTGAATGGC+TGG 0.520572 3_3:+79309270 Msa0475830:exon
AGATTTCCAGCAAGATGAAG+AGG 0.526085 3_3:+79310268 Msa0475830:CDS
CTACAGAGACTCTTACCTAA+AGG 0.529350 3_3:+79309368 Msa0475830:CDS
TGAGGATGTGCTTCAAGCCA+AGG 0.532471 3_3:-79310338 None:intergenic
TGATGGTTGCGTGCTCTACT+GGG 0.542806 3_3:-79309181 None:intergenic
ATTGAGATGAGAATAAGCTT+AGG 0.543333 3_3:+79309249 Msa0475830:five_prime_UTR
AATGACCAAGTTTCTTCTGT+AGG 0.551796 3_3:-79309461 None:intergenic
AAGCATGTTAGTTAGTACCT+TGG 0.556879 3_3:+79310520 Msa0475830:three_prime_UTR
CGCAACCATCAATCAAAACA+TGG 0.561151 3_3:+79309193 Msa0475830:five_prime_UTR
ACTATGGCTAGTGGGTTGTT+CGG 0.563373 3_3:+79310578 Msa0475830:three_prime_UTR
CTTGGTGACAATCCAACACC+AGG 0.576332 3_3:-79309300 None:intergenic
CTGGAAATCTTCTAAGCACA+CGG 0.583428 3_3:-79310255 None:intergenic
TCAACAAGTAAATATCATCA+AGG 0.589727 3_3:-79310389 None:intergenic
GTAGTAGTCATTGAAGTCCA+TGG 0.592320 3_3:-79309405 None:intergenic
GTTTATCTACTATGGCTAGT+GGG 0.595932 3_3:+79310570 Msa0475830:three_prime_UTR
TACACATTGATTAGAGTCCA+AGG 0.600793 3_3:-79310537 None:intergenic
AAGAAGAGTGAATGGCTGGT+AGG 0.606425 3_3:+79309274 Msa0475830:exon
GTAAATACCAAAACTTAGAG+GGG 0.616152 3_3:-79309124 None:intergenic
CTTTAGGTAAGAGTCTCTGT+AGG 0.619274 3_3:-79309367 None:intergenic
AGGAATCATTGGATGCACCA+TGG 0.643184 3_3:+79309388 Msa0475830:CDS
TGTTGAGATTAGTTAAAACA+GGG 0.644264 3_3:+79310433 Msa0475830:three_prime_UTR
GAGGATGTGCTTCAAGCCAA+GGG 0.644286 3_3:-79310337 None:intergenic
GTTCTACAATAGGGACAATG+AGG 0.652812 3_3:-79310356 None:intergenic
GATAAACGTGACTCATCACA+TGG 0.674611 3_3:-79310628 None:intergenic
GCATATCAAACACAACAACC+AGG 0.678834 3_3:-79310728 None:intergenic
GAAAGTTCATGGTTATTACG+TGG 0.699981 3_3:+79310200 Msa0475830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTAACAATAATTTAAT+TGG - chr3_3:79309863-79309882 None:intergenic 10.0%
!! AAATAAAATATGAATTTCAA+TGG - chr3_3:79309896-79309915 None:intergenic 10.0%
!!! AAAAAATAATTTTAGTATCT+TGG - chr3_3:79309945-79309964 None:intergenic 10.0%
!! AACAAGAAAATTTATAAATA+TGG + chr3_3:79309974-79309993 Msa0475830:intron 10.0%
!!! GATTTTAACAATAATTTAAT+TGG - chr3_3:79309863-79309882 None:intergenic 10.0%
!! AAATAAAATATGAATTTCAA+TGG - chr3_3:79309896-79309915 None:intergenic 10.0%
!!! AAAAAATAATTTTAGTATCT+TGG - chr3_3:79309945-79309964 None:intergenic 10.0%
!! AACAAGAAAATTTATAAATA+TGG + chr3_3:79309974-79309993 Msa0475830:intron 10.0%
!! AAAAAACTGTATTATTATGT+AGG - chr3_3:79309514-79309533 None:intergenic 15.0%
!!! ATTTATTTTTTTTCTCTCTA+AGG + chr3_3:79309670-79309689 Msa0475830:intron 15.0%
!! AAAAAACTGTATTATTATGT+AGG - chr3_3:79309514-79309533 None:intergenic 15.0%
!!! ATTTATTTTTTTTCTCTCTA+AGG + chr3_3:79309670-79309689 Msa0475830:intron 15.0%
!!! TAATTTTCTGATCTTTTTCT+TGG - chr3_3:79309321-79309340 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG + chr3_3:79309537-79309556 Msa0475830:intron 20.0%
!! AGAATTTATACAAATTGTCT+AGG + chr3_3:79309588-79309607 Msa0475830:intron 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG - chr3_3:79310131-79310150 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG + chr3_3:79310676-79310695 Msa0475830:three_prime_UTR 20.0%
!!! TAATTTTCTGATCTTTTTCT+TGG - chr3_3:79309321-79309340 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG + chr3_3:79309537-79309556 Msa0475830:intron 20.0%
!! AGAATTTATACAAATTGTCT+AGG + chr3_3:79309588-79309607 Msa0475830:intron 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG - chr3_3:79310131-79310150 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG + chr3_3:79310676-79310695 Msa0475830:three_prime_UTR 20.0%
! TGTAAATACCAAAACTTAGA+GGG - chr3_3:79309128-79309147 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG - chr3_3:79309129-79309148 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG + chr3_3:79309131-79309150 Msa0475830:five_prime_UTR 25.0%
!!! TGGATATGCATTATTTTTTG+TGG + chr3_3:79309213-79309232 Msa0475830:five_prime_UTR 25.0%
!!! GGATATGCATTATTTTTTGT+GGG + chr3_3:79309214-79309233 Msa0475830:five_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG - chr3_3:79309580-79309599 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG + chr3_3:79310020-79310039 Msa0475830:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG - chr3_3:79310132-79310151 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG - chr3_3:79310392-79310411 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG + chr3_3:79310432-79310451 Msa0475830:three_prime_UTR 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG + chr3_3:79310433-79310452 Msa0475830:three_prime_UTR 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG + chr3_3:79310675-79310694 Msa0475830:three_prime_UTR 25.0%
! TGTAAATACCAAAACTTAGA+GGG - chr3_3:79309128-79309147 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG - chr3_3:79309129-79309148 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG + chr3_3:79309131-79309150 Msa0475830:five_prime_UTR 25.0%
!!! TGGATATGCATTATTTTTTG+TGG + chr3_3:79309213-79309232 Msa0475830:five_prime_UTR 25.0%
!!! GGATATGCATTATTTTTTGT+GGG + chr3_3:79309214-79309233 Msa0475830:five_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG - chr3_3:79309580-79309599 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG + chr3_3:79310020-79310039 Msa0475830:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG - chr3_3:79310132-79310151 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG - chr3_3:79310392-79310411 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG + chr3_3:79310432-79310451 Msa0475830:three_prime_UTR 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG + chr3_3:79310433-79310452 Msa0475830:three_prime_UTR 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG + chr3_3:79310675-79310694 Msa0475830:three_prime_UTR 25.0%
! TCAATTTTCATGACTCTACA+TGG - chr3_3:79309104-79309123 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG - chr3_3:79309127-79309146 None:intergenic 30.0%
!!! CATATCCATGTTTTGATTGA+TGG - chr3_3:79309201-79309220 None:intergenic 30.0%
ATTGAGATGAGAATAAGCTT+AGG + chr3_3:79309249-79309268 Msa0475830:five_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG - chr3_3:79309430-79309449 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG + chr3_3:79309676-79309695 Msa0475830:intron 30.0%
AGAAGTTACTAGAAAGTTCA+TGG + chr3_3:79310189-79310208 Msa0475830:CDS 30.0%
! TCAGCAATAGTTCTACAATA+GGG - chr3_3:79310368-79310387 None:intergenic 30.0%
CATGCATGTTAAAGTCTTTA+AGG - chr3_3:79310708-79310727 None:intergenic 30.0%
! TCAATTTTCATGACTCTACA+TGG - chr3_3:79309104-79309123 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG - chr3_3:79309127-79309146 None:intergenic 30.0%
!!! CATATCCATGTTTTGATTGA+TGG - chr3_3:79309201-79309220 None:intergenic 30.0%
ATTGAGATGAGAATAAGCTT+AGG + chr3_3:79309249-79309268 Msa0475830:five_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG - chr3_3:79309430-79309449 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG + chr3_3:79309676-79309695 Msa0475830:intron 30.0%
AGAAGTTACTAGAAAGTTCA+TGG + chr3_3:79310189-79310208 Msa0475830:CDS 30.0%
! TCAGCAATAGTTCTACAATA+GGG - chr3_3:79310368-79310387 None:intergenic 30.0%
CATGCATGTTAAAGTCTTTA+AGG - chr3_3:79310708-79310727 None:intergenic 30.0%
! AAATTGACCCCTCTAAGTTT+TGG + chr3_3:79309117-79309136 Msa0475830:five_prime_UTR 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG + chr3_3:79309266-79309285 Msa0475830:exon 35.0%
CTCTTACCTAAAGGAATCAT+TGG + chr3_3:79309377-79309396 Msa0475830:CDS 35.0%
AATGACCAAGTTTCTTCTGT+AGG - chr3_3:79309464-79309483 None:intergenic 35.0%
TATGTAGGATTTGATGTACC+TGG - chr3_3:79309499-79309518 None:intergenic 35.0%
GAGTGTGCATAAGAAATATG+TGG - chr3_3:79309629-79309648 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG + chr3_3:79309759-79309778 Msa0475830:intron 35.0%
ACCTCATAACTCATCATAAG+TGG - chr3_3:79309763-79309782 None:intergenic 35.0%
CATTCTGCATACAACAATGT+CGG + chr3_3:79309783-79309802 Msa0475830:intron 35.0%
GAATTTCAATGGATATCACG+TGG - chr3_3:79309885-79309904 None:intergenic 35.0%
GAACACAATCCCAAAAAAGA+AGG + chr3_3:79310119-79310138 Msa0475830:CDS 35.0%
! CTAATCCTGCATCTTTCTTT+TGG - chr3_3:79310166-79310185 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG + chr3_3:79310164-79310183 Msa0475830:CDS 35.0%
GAAAGTTCATGGTTATTACG+TGG + chr3_3:79310200-79310219 Msa0475830:CDS 35.0%
GATACTTATGTGAGCAAGAA+AGG - chr3_3:79310301-79310320 None:intergenic 35.0%
! CTCAGCAATAGTTCTACAAT+AGG - chr3_3:79310369-79310388 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG + chr3_3:79310520-79310539 Msa0475830:three_prime_UTR 35.0%
! TACACATTGATTAGAGTCCA+AGG - chr3_3:79310540-79310559 None:intergenic 35.0%
AGTCATGCGTTTATCTACTA+TGG + chr3_3:79310562-79310581 Msa0475830:three_prime_UTR 35.0%
GTTTATCTACTATGGCTAGT+GGG + chr3_3:79310570-79310589 Msa0475830:three_prime_UTR 35.0%
! AAATTGACCCCTCTAAGTTT+TGG + chr3_3:79309117-79309136 Msa0475830:five_prime_UTR 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG + chr3_3:79309266-79309285 Msa0475830:exon 35.0%
CTCTTACCTAAAGGAATCAT+TGG + chr3_3:79309377-79309396 Msa0475830:CDS 35.0%
AATGACCAAGTTTCTTCTGT+AGG - chr3_3:79309464-79309483 None:intergenic 35.0%
TATGTAGGATTTGATGTACC+TGG - chr3_3:79309499-79309518 None:intergenic 35.0%
GAGTGTGCATAAGAAATATG+TGG - chr3_3:79309629-79309648 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG + chr3_3:79309759-79309778 Msa0475830:intron 35.0%
ACCTCATAACTCATCATAAG+TGG - chr3_3:79309763-79309782 None:intergenic 35.0%
CATTCTGCATACAACAATGT+CGG + chr3_3:79309783-79309802 Msa0475830:intron 35.0%
GAATTTCAATGGATATCACG+TGG - chr3_3:79309885-79309904 None:intergenic 35.0%
GAACACAATCCCAAAAAAGA+AGG + chr3_3:79310119-79310138 Msa0475830:CDS 35.0%
! CTAATCCTGCATCTTTCTTT+TGG - chr3_3:79310166-79310185 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG + chr3_3:79310164-79310183 Msa0475830:CDS 35.0%
GAAAGTTCATGGTTATTACG+TGG + chr3_3:79310200-79310219 Msa0475830:CDS 35.0%
GATACTTATGTGAGCAAGAA+AGG - chr3_3:79310301-79310320 None:intergenic 35.0%
! CTCAGCAATAGTTCTACAAT+AGG - chr3_3:79310369-79310388 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG + chr3_3:79310520-79310539 Msa0475830:three_prime_UTR 35.0%
! TACACATTGATTAGAGTCCA+AGG - chr3_3:79310540-79310559 None:intergenic 35.0%
AGTCATGCGTTTATCTACTA+TGG + chr3_3:79310562-79310581 Msa0475830:three_prime_UTR 35.0%
GTTTATCTACTATGGCTAGT+GGG + chr3_3:79310570-79310589 Msa0475830:three_prime_UTR 35.0%
CGCAACCATCAATCAAAACA+TGG + chr3_3:79309193-79309212 Msa0475830:five_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG - chr3_3:79309370-79309389 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG + chr3_3:79309368-79309387 Msa0475830:CDS 40.0%
GTGCATCCAATGATTCCTTT+AGG - chr3_3:79309386-79309405 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG - chr3_3:79309408-79309427 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG - chr3_3:79309454-79309473 None:intergenic 40.0%
! GTCATTTCTTTTCCTCTTCC+AGG + chr3_3:79309478-79309497 Msa0475830:CDS 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG + chr3_3:79309685-79309704 Msa0475830:intron 40.0%
AAGAATCCTACCATCTAACC+TGG + chr3_3:79309810-79309829 Msa0475830:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG + chr3_3:79310158-79310177 Msa0475830:CDS 40.0%
CTGGAAATCTTCTAAGCACA+CGG - chr3_3:79310258-79310277 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG + chr3_3:79310268-79310287 Msa0475830:CDS 40.0%
TCATAACCTCTTCATCTTGC+TGG - chr3_3:79310277-79310296 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG - chr3_3:79310359-79310378 None:intergenic 40.0%
CGTTTATCTACTATGGCTAG+TGG + chr3_3:79310569-79310588 Msa0475830:three_prime_UTR 40.0%
GATAAACGTGACTCATCACA+TGG - chr3_3:79310631-79310650 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG + chr3_3:79310710-79310729 Msa0475830:three_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG - chr3_3:79310731-79310750 None:intergenic 40.0%
CGCAACCATCAATCAAAACA+TGG + chr3_3:79309193-79309212 Msa0475830:five_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG - chr3_3:79309370-79309389 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG + chr3_3:79309368-79309387 Msa0475830:CDS 40.0%
GTGCATCCAATGATTCCTTT+AGG - chr3_3:79309386-79309405 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG - chr3_3:79309408-79309427 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG - chr3_3:79309454-79309473 None:intergenic 40.0%
! GTCATTTCTTTTCCTCTTCC+AGG + chr3_3:79309478-79309497 Msa0475830:CDS 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG + chr3_3:79309685-79309704 Msa0475830:intron 40.0%
AAGAATCCTACCATCTAACC+TGG + chr3_3:79309810-79309829 Msa0475830:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG + chr3_3:79310158-79310177 Msa0475830:CDS 40.0%
CTGGAAATCTTCTAAGCACA+CGG - chr3_3:79310258-79310277 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG + chr3_3:79310268-79310287 Msa0475830:CDS 40.0%
TCATAACCTCTTCATCTTGC+TGG - chr3_3:79310277-79310296 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG - chr3_3:79310359-79310378 None:intergenic 40.0%
CGTTTATCTACTATGGCTAG+TGG + chr3_3:79310569-79310588 Msa0475830:three_prime_UTR 40.0%
GATAAACGTGACTCATCACA+TGG - chr3_3:79310631-79310650 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG + chr3_3:79310710-79310729 Msa0475830:three_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG - chr3_3:79310731-79310750 None:intergenic 40.0%
GGTAAAGAAGAGTGAATGGC+TGG + chr3_3:79309270-79309289 Msa0475830:exon 45.0%
AAGAAGAGTGAATGGCTGGT+AGG + chr3_3:79309274-79309293 Msa0475830:exon 45.0%
AGGAATCATTGGATGCACCA+TGG + chr3_3:79309388-79309407 Msa0475830:CDS 45.0%
CAACGCCTACAGAAGAAACT+TGG + chr3_3:79309456-79309475 Msa0475830:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG - chr3_3:79309493-79309512 None:intergenic 45.0%
GCACACTCACATGCATAGTA+AGG + chr3_3:79309641-79309660 Msa0475830:intron 45.0%
ATATGTCTATAGCCACAGCC+AGG - chr3_3:79309831-79309850 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG + chr3_3:79310321-79310340 Msa0475830:CDS 45.0%
!! ACTATGGCTAGTGGGTTGTT+CGG + chr3_3:79310578-79310597 Msa0475830:three_prime_UTR 45.0%
GGTAAAGAAGAGTGAATGGC+TGG + chr3_3:79309270-79309289 Msa0475830:exon 45.0%
AAGAAGAGTGAATGGCTGGT+AGG + chr3_3:79309274-79309293 Msa0475830:exon 45.0%
AGGAATCATTGGATGCACCA+TGG + chr3_3:79309388-79309407 Msa0475830:CDS 45.0%
CAACGCCTACAGAAGAAACT+TGG + chr3_3:79309456-79309475 Msa0475830:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG - chr3_3:79309493-79309512 None:intergenic 45.0%
GCACACTCACATGCATAGTA+AGG + chr3_3:79309641-79309660 Msa0475830:intron 45.0%
ATATGTCTATAGCCACAGCC+AGG - chr3_3:79309831-79309850 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG + chr3_3:79310321-79310340 Msa0475830:CDS 45.0%
!! ACTATGGCTAGTGGGTTGTT+CGG + chr3_3:79310578-79310597 Msa0475830:three_prime_UTR 45.0%
TGATGGTTGCGTGCTCTACT+GGG - chr3_3:79309184-79309203 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG - chr3_3:79309185-79309204 None:intergenic 50.0%
! CTTGGTGACAATCCAACACC+AGG - chr3_3:79309303-79309322 None:intergenic 50.0%
ATAGCCACAGCCAGGTTAGA+TGG - chr3_3:79309823-79309842 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG - chr3_3:79310340-79310359 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG - chr3_3:79310341-79310360 None:intergenic 50.0%
TGATGGTTGCGTGCTCTACT+GGG - chr3_3:79309184-79309203 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG - chr3_3:79309185-79309204 None:intergenic 50.0%
! CTTGGTGACAATCCAACACC+AGG - chr3_3:79309303-79309322 None:intergenic 50.0%
ATAGCCACAGCCAGGTTAGA+TGG - chr3_3:79309823-79309842 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG - chr3_3:79310340-79310359 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG - chr3_3:79310341-79310360 None:intergenic 50.0%
TGAATGGCTGGTAGGCTACC+TGG + chr3_3:79309282-79309301 Msa0475830:exon 55.0%
CCACAGCCAGGTTAGATGGT+AGG - chr3_3:79309819-79309838 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG + chr3_3:79309816-79309835 Msa0475830:intron 55.0%
TGAATGGCTGGTAGGCTACC+TGG + chr3_3:79309282-79309301 Msa0475830:exon 55.0%
CCACAGCCAGGTTAGATGGT+AGG - chr3_3:79309819-79309838 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG + chr3_3:79309816-79309835 Msa0475830:intron 55.0%
GCTGGTAGGCTACCTGGTGT+TGG + chr3_3:79309288-79309307 Msa0475830:CDS 60.0%
GCTGGTAGGCTACCTGGTGT+TGG + chr3_3:79309288-79309307 Msa0475830:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 79309064 79310785 79309064 ID=Msa0475830;Name=Msa0475830
chr3_3 mRNA 79309064 79310785 79309064 ID=Msa0475830-mRNA-1;Parent=Msa0475830;Name=Msa0475830-mRNA-1;_AED=0.14;_eAED=0.14;_QI=221|1|1|1|1|1|2|391|163
chr3_3 exon 79309064 79309499 79309064 ID=Msa0475830-mRNA-1:exon:21524;Parent=Msa0475830-mRNA-1
chr3_3 exon 79310118 79310785 79310118 ID=Msa0475830-mRNA-1:exon:21525;Parent=Msa0475830-mRNA-1
chr3_3 five_prime_UTR 79309064 79309284 79309064 ID=Msa0475830-mRNA-1:five_prime_utr;Parent=Msa0475830-mRNA-1
chr3_3 CDS 79309285 79309499 79309285 ID=Msa0475830-mRNA-1:cds;Parent=Msa0475830-mRNA-1
chr3_3 CDS 79310118 79310394 79310118 ID=Msa0475830-mRNA-1:cds;Parent=Msa0475830-mRNA-1
chr3_3 three_prime_UTR 79310395 79310785 79310395 ID=Msa0475830-mRNA-1:three_prime_utr;Parent=Msa0475830-mRNA-1
Gene Sequence

>Msa0475830

ATGGCTGGTAGGCTACCTGGTGTTGGATTGTCACCAAGAAAAAGATCAGAAAATTATCACAACAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAACTGCTTTCAAAGCCAAACAACGCCTACAGAAGAAACTTGGTCATTTCTTTTCCTCTTCCAGTGAACACAATCCCAAAAAAGAAGGAAAAGAAAACAAAAGCAGCTTCCAAAAGAAAGATGCAGGATTAGGTAAGAAGTTACTAGAAAGTTCATGGTTATTACGTGGCAACAAGTTTAAGAAAGAGAGAAAAATTTGTGCCGTGTGCTTAGAAGATTTCCAGCAAGATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAGCACATCCTCATTGTCCCTATTGTAGAACTATTGCTGAGCCTTGA

Protein sequence

>Msa0475830

MAGRLPGVGLSPRKRSENYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSSEHNPKKEGKENKSSFQKKDAGLGKKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACLLPWLEAHPHCPYCRTIAEP*