AlfalfaGEDB | Msa0429130

M. sativa cultivar zhongmu-4 / Msa0429130

KEGG: -
GO: GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576
PFAM: PF02458.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429130	XP_024634972.1	95.260	443	21	0	55	497	1	443	0.0	883

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429130	sp\|Q39048\|CER2_ARATH	41.014	434	220	14	61	479	1	413	1.86e-97	303

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429130	A0A396J1C8	95.260	443	21	0	55	497	1	443	0.0	883

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0429130	0.816730	4.756862e-52	-8.615850e-47
Msa0005690	Msa0429130	0.811632	6.352148e-51	-8.615850e-47
Msa0008330	Msa0429130	0.873988	9.590757e-68	-8.615850e-47
Msa0012740	Msa0429130	0.800273	1.557187e-48	-8.615850e-47
Msa0014790	Msa0429130	0.810550	1.090226e-50	-8.615850e-47
Msa0014970	Msa0429130	0.805391	1.365520e-49	-8.615850e-47
Msa0015370	Msa0429130	0.800634	1.314305e-48	-8.615850e-47
Msa0021980	Msa0429130	0.841460	4.688940e-58	-8.615850e-47
Msa0026120	Msa0429130	0.886552	3.097397e-72	-8.615850e-47
Msa0026770	Msa0429130	0.827786	1.290948e-54	-8.615850e-47

Showing 1 to 10 of 876 entries

Previous1 2 3 4 5…88Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429130	MtrunA17_Chr3g0132831	95.260	443	21	0	55	497	1	443	0.0	883
Msa0429130	MtrunA17_Chr1g0163441	78.539	438	89	2	55	490	1	435	0.0	714
Msa0429130	MtrunA17_Chr2g0298091	76.749	443	97	3	55	494	1	440	0.0	703
Msa0429130	MtrunA17_Chr8g0378151	39.234	418	240	8	69	482	16	423	4.03e-95	295
Msa0429130	MtrunA17_Chr7g0274021	25.170	441	278	16	72	478	15	437	9.38e-23	100
Msa0429130	MtrunA17_Chr1g0148851	25.682	440	271	17	74	478	13	431	4.11e-21	95.9
Msa0429130	MtrunA17_Chr8g0386141	27.459	244	152	6	100	329	39	271	1.66e-17	84.7
Msa0429130	MtrunA17_Chr8g0376901	23.684	266	188	8	72	332	10	265	1.89e-15	78.6
Msa0429130	MtrunA17_Chr4g0001861	23.358	274	189	9	69	331	6	269	2.46e-13	72.0
Msa0429130	MtrunA17_Chr4g0004691	29.091	165	105	5	72	231	11	168	3.12e-13	68.2

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429130	AT4G24510.1	41.014	434	220	14	61	479	1	413	1.89e-98	303
Msa0429130	AT4G13840.1	36.279	430	249	10	62	484	11	422	1.45e-91	286
Msa0429130	AT3G23840.1	36.343	432	242	11	64	491	11	413	4.46e-90	281
Msa0429130	AT3G48720.1	26.070	257	164	10	83	325	25	269	1.80e-14	75.9
Msa0429130	AT5G48930.1	23.776	286	175	9	69	332	6	270	3.24e-14	75.1
Msa0429130	AT2G19070.1	24.204	314	201	11	65	355	3	302	2.01e-13	72.8
Msa0429130	AT1G32910.1	24.439	401	244	15	114	475	59	439	7.01e-13	71.2
Msa0429130	AT1G27620.1	23.192	401	266	15	100	479	43	422	2.75e-12	68.9
Msa0429130	AT5G41040.1	28.902	173	108	5	100	266	65	228	5.91e-12	68.2
Msa0429130	AT5G41040.2	28.902	173	108	5	100	266	49	212	6.05e-12	68.2

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 127 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGGAGGAAGGTGA+AGG	0.654901	3_2:+80304321	Msa0429130:CDS
AAAGAGAAAGAGACGAGAGA+AGG	0.557450	3_2:-80302048	None:intergenic
AAAGTTAACATTTGTAGATT+TGG	0.305013	3_2:+80304371	Msa0429130:CDS
AAATCACAATTTGCCAAAAT+CGG	0.338748	3_2:-80304435	None:intergenic
AAATGTATAGGACAAATAAG+AGG	0.585230	3_2:+80304111	Msa0429130:CDS
AAATGTGGAGGACTATCCGT+GGG	0.635013	3_2:+80303745	Msa0429130:CDS
AAATTATTTCAGCTATGATT+TGG	0.308886	3_2:+80304088	Msa0429130:CDS
AACTGAGGTTTAGTGAGATT+TGG	0.304675	3_2:-80303874	None:intergenic
AAGAAGGGATGGTCTAATTC+TGG	0.316930	3_2:+80301805	Msa0429130:five_prime_UTR
AAGTGGAGTCACACACTAGC+TGG	0.545603	3_2:+80303823	Msa0429130:CDS

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCTAGCAGATTTAATAAAGA+AGG	-	chr3_2:80301866-80301885	None:intergenic	30.0%
CCTTCTTTATTAAATCTGCT+AGG	+	chr3_2:80301863-80301882	Msa0429130:five_prime_UTR	30.0%
CCCTACAAATATTGAAATCA+AGG	+	chr3_2:80301969-80301988	Msa0429130:CDS	30.0%
GTTGAAATTCTTGAAGTTTG+GGG	-	chr3_2:80302112-80302131	None:intergenic	30.0%
GGTTGAAATTCTTGAAGTTT+GGG	-	chr3_2:80302113-80302132	None:intergenic	30.0%
TGCATATAACCTAAACTACA+TGG	+	chr3_2:80302168-80302187	Msa0429130:CDS	30.0%
TTAGCAAATCCATGTAGTTT+AGG	-	chr3_2:80302180-80302199	None:intergenic	30.0%
ATGGCTTAAATAATGTCACA+AGG	-	chr3_2:80302656-80302675	None:intergenic	30.0%
ATTTAAGCCATCTGTTAGTT+TGG	+	chr3_2:80302665-80302684	Msa0429130:intron	30.0%
TTACAAGGTAACTAAGAGAT+TGG	-	chr3_2:80303156-80303175	None:intergenic	30.0%

Showing 1 to 10 of 219 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	80301775	80304946	80301775	ID=Msa0429130;Name=Msa0429130
chr3_2	mRNA	80301775	80304946	80301775	ID=Msa0429130-mRNA-1;Parent=Msa0429130;Name=Msa0429130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142\|1\|1\|1\|1\|1\|2\|314\|497
chr3_2	exon	80301775	80302510	80301775	ID=Msa0429130-mRNA-1:exon:21909;Parent=Msa0429130-mRNA-1
chr3_2	exon	80303733	80304946	80303733	ID=Msa0429130-mRNA-1:exon:21910;Parent=Msa0429130-mRNA-1
chr3_2	five_prime_UTR	80301775	80301916	80301775	ID=Msa0429130-mRNA-1:five_prime_utr;Parent=Msa0429130-mRNA-1
chr3_2	CDS	80301917	80302510	80301917	ID=Msa0429130-mRNA-1:cds;Parent=Msa0429130-mRNA-1
chr3_2	CDS	80303733	80304632	80303733	ID=Msa0429130-mRNA-1:cds;Parent=Msa0429130-mRNA-1
chr3_2	three_prime_UTR	80304633	80304946	80304633	ID=Msa0429130-mRNA-1:three_prime_utr;Parent=Msa0429130-mRNA-1

Gene Sequence

>Msa0429130

ATGAAGGGATGTGGTACAGTACAGTACCATCAATTCATTGAATGCAATATTTCCCTACAAATATTGAAATCAAGGAGGAACATATCCCACGTCAAAAACCAAACTACCATACTTTCAAATTGCAAAAACAACCTTCTCTCGTCTCTTTCTCTTTATTTGGAAATGGGTTCACTACCTAATTTGGAAACTCCTCCCCAAACTTCAAGAATTTCAACCGTAGTTCCAGCAACCCCTCGTGGTGAAGAAAATAGTGCATATAACCTAAACTACATGGATTTGCTAATGAAACTCCACTATATCCGATCCATATACTTATTCAATTCTAAAGCGGTTCAAAACCTCTCAATATCCGACTTAAAAGCACCAATGTTTCCACTACTTGATTCATACTCACATGTTTCAGGTAGGGTTAGAATATCAGAATCAGGAAGACCGTTTATCAAGTGCAACGACGCGGGGGTGCGAATAGCAGAGTCACACTGCGAGAAAACGCTGCGTGAATGGTTGGATGAAAAAGAGTACTCTGTTGATGAACTTGTATATGATCATGTGCTTGGTCCTGATCTTGCTTTTTCTCCTTTGGTTTTTGTCAAGTTCACATTCTTCAAATGTGGAGGACTATCCGTGGGACTGAGCTGGGCTCACATTCTTGGAGATGCATTTTCAGCTTTTAACTTCATCACCAAGTGGAGTCACACACTAGCTGGTCAAGCTCCACCAAAATCTCTTCACATGCCAAATCTCACTAAACCTCAGTTCTTATCAAATTCTATTTCTGATAATCCCATTTCCATTAAAAGGGCAACAACTGTTGAAGAATATTGGCTCGCTGCCACTGATAGTTATGTAGCTACTCACGCTTTTCACATCACTTCCAAACAACTTCATCATTTGGTAACAACATCCATATCAACCAATACCAATATCAATACCAAGACAAAGTATTTTGAAATTATTTCAGCTATGATTTGGAAATGTATAGGACAAATAAGAGGAGATTTTGGACCTAGGGTTGTGACGATATGTACTACAAATATCTCTGATCGCGCTGAAAATGAATTCCCGACAAATGGCTCGGTGTTGAGCAAAATCGAAACAAGTTTACCTCCTGGAGAATCTAATATATCAGAATTAGTGAAGCTAATTTCTGAGAAAAAAATGAATGAGAATCATGCATTGGAAAAAATGATGGAGGAAGGTGAAGGAAAAGATGATTTTATTGTTTATGGAGCAAAGTTAACATTTGTAGATTTGGAAGAAGCTAATTTTTATGGGATAAAGATTAAAGGGCAGAAACCGATTTTGGCAAATTGTGATTTTCGAGGTGTGGGTGATCAAGGTGTTGTTTTGGTTCTTCCAGGACCAGAAGATGACAATGGTAATAATGGAAGGATGGTAACAATTTCTTTACCTGGGAAAGAACTTGACCAACTGAAATGTAAACTAGCACAAGAATGGGATATACAATATTGTTCGAGTCTTGGACTTTGTTAA

Protein sequence

>Msa0429130

MKGCGTVQYHQFIECNISLQILKSRRNISHVKNQTTILSNCKNNLLSSLSLYLEMGSLPNLETPPQTSRISTVVPATPRGEENSAYNLNYMDLLMKLHYIRSIYLFNSKAVQNLSISDLKAPMFPLLDSYSHVSGRVRISESGRPFIKCNDAGVRIAESHCEKTLREWLDEKEYSVDELVYDHVLGPDLAFSPLVFVKFTFFKCGGLSVGLSWAHILGDAFSAFNFITKWSHTLAGQAPPKSLHMPNLTKPQFLSNSISDNPISIKRATTVEEYWLAATDSYVATHAFHITSKQLHHLVTTSISTNTNINTKTKYFEIISAMIWKCIGQIRGDFGPRVVTICTTNISDRAENEFPTNGSVLSKIETSLPPGESNISELVKLISEKKMNENHALEKMMEEGEGKDDFIVYGAKLTFVDLEEANFYGIKIKGQKPILANCDFRGVGDQGVVLVLPGPEDDNGNNGRMVTISLPGKELDQLKCKLAQEWDIQYCSSLGLC*