AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540120 MtrunA17_Chr4g0017941 90.074 272 20 3 2 267 1 271 2.02e-163 456
Msa0540120 MtrunA17_Chr1g0178361 59.649 228 78 4 19 243 19 235 4.91e-80 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540120 AT5G61670.2 75.527 237 46 2 36 267 37 266 2.69e-121 349
Msa0540120 AT5G61670.1 75.527 237 46 2 36 267 37 266 2.69e-121 349
Msa0540120 AT5G06130.2 64.423 208 69 2 41 243 38 245 2.06e-88 266
Msa0540120 AT5G06130.1 70.807 161 46 1 84 243 1 161 2.53e-78 237

Find 45 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATCTTGAACAGTTTC+AGG 0.138888 4_1:-21682372 None:intergenic
GGAATGAATGATGGGAAATT+AGG 0.261986 4_1:-21683820 None:intergenic
CATTCCATTCTTGCCTCCTT+TGG 0.293420 4_1:+21683837 Msa0540120:CDS
GATGGAACTTCAAGAAATTC+AGG 0.311738 4_1:+21682398 Msa0540120:CDS
TGGTGTAATCTCTGCATTAA+TGG 0.340651 4_1:+21685104 Msa0540120:CDS
ATTTAGATGAATGAATCTTT+TGG 0.346573 4_1:-21682125 None:intergenic
AAGAAATTCAGGATAATATT+CGG 0.347874 4_1:+21682409 Msa0540120:CDS
CCTATTGTGGCATCATTCTC+TGG 0.350969 4_1:+21685072 Msa0540120:CDS
AAAGAAGATGATGTTGTGTT+TGG 0.379275 4_1:+21682060 None:intergenic
CGCAGGTTCTGTATTATAGA+AGG 0.413449 4_1:+21682348 Msa0540120:intron
CTTACCAAAGGAGGCAAGAA+TGG 0.419900 4_1:-21683841 None:intergenic
ATGTTGTGTTTGGGTGTAGT+TGG 0.422331 4_1:+21682070 Msa0540120:CDS
CCAGAGAATGATGCCACAAT+AGG 0.441935 4_1:-21685072 None:intergenic
TCATTCTCTGGTGGAGCTGT+TGG 0.444757 4_1:+21685084 Msa0540120:CDS
TGCAAATACTGTCTTGGTAC+TGG 0.456169 4_1:+21685168 Msa0540120:CDS
GTAACAATTTGCATTAAGAA+AGG 0.462823 4_1:-21685282 None:intergenic
GGAATCAAATTTCTGAATGG+TGG 0.463181 4_1:+21685228 Msa0540120:CDS
CTGGAGCTTAAGCTTGGAAT+AGG 0.466047 4_1:+21684750 Msa0540120:CDS
TTACTGCTTTCAACTGTTGA+GGG 0.467612 4_1:+21685301 Msa0540120:CDS
TTGTGTTTGGGTGTAGTTGG+TGG 0.471210 4_1:+21682073 Msa0540120:CDS
GGCAAGAATGGAATGAATGA+TGG 0.471565 4_1:-21683829 None:intergenic
TTAGGAATCAAATTTCTGAA+TGG 0.475496 4_1:+21685225 Msa0540120:CDS
GATAAACAATGTAAAACAAC+AGG 0.476410 4_1:+21685134 Msa0540120:CDS
TCTCAGCTGGAGCTTAAGCT+TGG 0.484713 4_1:+21684744 Msa0540120:intron
AAGAAGATGATGTTGTGTTT+GGG 0.485406 4_1:+21682061 None:intergenic
TGCAGACTTCAGCAAACCTC+CGG 0.495333 4_1:+21683954 Msa0540120:intron
AAAAGATGCAAATACTGTCT+TGG 0.520613 4_1:+21685162 Msa0540120:CDS
GTTACTGCTTTCAACTGTTG+AGG 0.523324 4_1:+21685300 Msa0540120:CDS
CAATAAGAGGTGGCGTGTCA+TGG 0.530836 4_1:+21682165 Msa0540120:CDS
ATGGTGGAACTGAAGCATTA+TGG 0.532839 4_1:+21685244 Msa0540120:CDS
TGTGTTTGGGTGTAGTTGGT+GGG 0.535913 4_1:+21682074 Msa0540120:CDS
AACAGGTTGCATAATACTGC+CGG 0.551192 4_1:-21683973 None:intergenic
GCAAGAATGGAATGAATGAT+GGG 0.568641 4_1:-21683828 None:intergenic
TGCATCTGCCTATGCAGTTG+AGG 0.569061 4_1:+21684805 Msa0540120:CDS
TACATGAAACTTACCAAAGG+AGG 0.570263 4_1:-21683850 None:intergenic
TAGTCAGGTTGATCCTATTG+TGG 0.580018 4_1:+21685059 Msa0540120:intron
ATTGTGGCATCATTCTCTGG+TGG 0.587254 4_1:+21685075 Msa0540120:CDS
AGGATAATATTCGGAGTCGA+AGG 0.596991 4_1:+21682418 Msa0540120:CDS
TAAATCTTACACTCGGAGCA+AGG 0.601691 4_1:-21684033 None:intergenic
GAGCTTAAGCTTGGAATAGG+TGG 0.603781 4_1:+21684753 Msa0540120:CDS
GGACGCTACCTCAACTGCAT+AGG 0.605455 4_1:-21684813 None:intergenic
GTTTAGTTGAAGACATGTTG+TGG 0.621480 4_1:-21682098 None:intergenic
TAAAATGCAGATCTCCGAAG+TGG 0.622921 4_1:-21685205 None:intergenic
AAAACAGTTTCAATAAGAGG+TGG 0.630936 4_1:+21682155 Msa0540120:CDS
AGGTTGCATAATACTGCCGG+AGG 0.679756 4_1:-21683970 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAATTTAATATTGAA+TGG + chr4_1:21682846-21682865 Msa0540120:intron 10.0%
!! AATCAAAATAATCTTAATAA+TGG - chr4_1:21683592-21683611 None:intergenic 10.0%
!!! TGATAATATTTTTATTGATA+AGG + chr4_1:21684556-21684575 Msa0540120:intron 10.0%
!!! AAAAAACTCATTTTTAAAAC+AGG - chr4_1:21682315-21682334 None:intergenic 15.0%
!!! GAATAAGATTTTTTTACATA+TGG + chr4_1:21682440-21682459 Msa0540120:CDS 15.0%
!! TAAAAAAATATTGAAGATGA+TGG + chr4_1:21682890-21682909 Msa0540120:intron 15.0%
!! AAAAAAATATTGAAGATGAT+GGG + chr4_1:21682891-21682910 Msa0540120:intron 15.0%
!!! ATTTAGATGAATGAATCTTT+TGG - chr4_1:21682128-21682147 None:intergenic 20.0%
!! AAGAAATTCAGGATAATATT+CGG + chr4_1:21682409-21682428 Msa0540120:CDS 20.0%
!! ATTTAATATTGAATGGACAA+TGG + chr4_1:21682853-21682872 Msa0540120:intron 20.0%
!!! CAGTTTGATTTTATTACTTA+TGG + chr4_1:21683511-21683530 Msa0540120:intron 20.0%
!! ATGTATACATAAAATTGAGA+TGG + chr4_1:21683545-21683564 Msa0540120:intron 20.0%
!!! GTATAATGTTGATAAGAAAA+GGG - chr4_1:21683706-21683725 None:intergenic 20.0%
!!! AGTATAATGTTGATAAGAAA+AGG - chr4_1:21683707-21683726 None:intergenic 20.0%
!!! TTATACTCTTGTTATTTTGT+AGG + chr4_1:21683720-21683739 Msa0540120:intron 20.0%
!! TAATGAAGTAGAATATGAAA+TGG - chr4_1:21684125-21684144 None:intergenic 20.0%
!! TTCATATTCTACTTCATTAA+TGG + chr4_1:21684126-21684145 Msa0540120:intron 20.0%
!! TACAATATAGATTATTACGA+CGG - chr4_1:21684245-21684264 None:intergenic 20.0%
!!! TATTTTTATTGATAAGGCTT+AGG + chr4_1:21684562-21684581 Msa0540120:intron 20.0%
! AGAAAAACAGTTTCAATAAG+AGG + chr4_1:21682152-21682171 Msa0540120:CDS 25.0%
! GTGTATTTCATATAAAAAGG+AGG - chr4_1:21682290-21682309 None:intergenic 25.0%
! GAGGTGTATTTCATATAAAA+AGG - chr4_1:21682293-21682312 None:intergenic 25.0%
!!! AAACTCATTTTTAAAACAGG+AGG - chr4_1:21682312-21682331 None:intergenic 25.0%
!!! GATTTTTTTACATATGGAAG+AGG + chr4_1:21682446-21682465 Msa0540120:CDS 25.0%
!! TTGCAATCACTAACATATTT+TGG - chr4_1:21682710-21682729 None:intergenic 25.0%
! CATCATTATTGTTCTTTCAT+CGG - chr4_1:21682756-21682775 None:intergenic 25.0%
! ATATGATGATAATTCTCAGA+GGG + chr4_1:21683268-21683287 Msa0540120:intron 25.0%
! GTGTGATTAAATACAATTAC+GGG - chr4_1:21683364-21683383 None:intergenic 25.0%
! GGTGTGATTAAATACAATTA+CGG - chr4_1:21683365-21683384 None:intergenic 25.0%
! GTAATTGTATTTAATCACAC+CGG + chr4_1:21683364-21683383 Msa0540120:intron 25.0%
!! TAAAATTGAGATGGATTTGT+TGG + chr4_1:21683554-21683573 Msa0540120:intron 25.0%
!! TGGTAATTTGAATTTTCAAC+AGG - chr4_1:21683659-21683678 None:intergenic 25.0%
! ACATAGAGTAAATGCATAAA+TGG - chr4_1:21683679-21683698 None:intergenic 25.0%
! AGAATTAAAAATGCTGAACT+TGG + chr4_1:21683766-21683785 Msa0540120:CDS 25.0%
! ATTTACATGAAACTTACCAA+AGG - chr4_1:21683856-21683875 None:intergenic 25.0%
!! ATTAGTGGGATAATACTTTT+TGG + chr4_1:21684004-21684023 Msa0540120:CDS 25.0%
! GTAAAAGTAAATCTTACACT+CGG - chr4_1:21684043-21684062 None:intergenic 25.0%
! ACAATATAGATTATTACGAC+GGG - chr4_1:21684244-21684263 None:intergenic 25.0%
! CGTAATAATCTATATTGTAG+CGG + chr4_1:21684246-21684265 Msa0540120:intron 25.0%
!! TTATTGTAATTTTTGTCTCG+TGG - chr4_1:21684388-21684407 None:intergenic 25.0%
! TTAGGTTAAGCAAATATTAC+TGG - chr4_1:21684506-21684525 None:intergenic 25.0%
!! CTTTTTATATCCATCTTTTG+TGG + chr4_1:21684681-21684700 Msa0540120:intron 25.0%
! AAAGCTGAAAATTATTCTCT+AGG + chr4_1:21684933-21684952 Msa0540120:intron 25.0%
! AAGCTGAAAATTATTCTCTA+GGG + chr4_1:21684934-21684953 Msa0540120:intron 25.0%
! CAACATAATTTCGTTACTAT+TGG - chr4_1:21685032-21685051 None:intergenic 25.0%
! CAATAGTAACGAAATTATGT+TGG + chr4_1:21685030-21685049 Msa0540120:intron 25.0%
! GATAAACAATGTAAAACAAC+AGG + chr4_1:21685134-21685153 Msa0540120:CDS 25.0%
! TTAGGAATCAAATTTCTGAA+TGG + chr4_1:21685225-21685244 Msa0540120:CDS 25.0%
! GTAACAATTTGCATTAAGAA+AGG - chr4_1:21685285-21685304 None:intergenic 25.0%
AAAACAGTTTCAATAAGAGG+TGG + chr4_1:21682155-21682174 Msa0540120:CDS 30.0%
!!! TTTTTTATCGTTTTGAACGC+AGG + chr4_1:21682331-21682350 Msa0540120:intron 30.0%
! TGTTCAAGATTTTGCTAAGA+TGG + chr4_1:21682380-21682399 Msa0540120:CDS 30.0%
AACAGACTTTACTTACCTTT+CGG + chr4_1:21682619-21682638 Msa0540120:intron 30.0%
!! GTTTTTCATAGCTTGTATGT+AGG + chr4_1:21682792-21682811 Msa0540120:intron 30.0%
AATATTGAATGGACAATGGT+TGG + chr4_1:21682857-21682876 Msa0540120:intron 30.0%
CAAATTCCACTTTAGATCAT+TGG - chr4_1:21682978-21682997 None:intergenic 30.0%
CTAAAGTGGAATTTGAATGA+TGG + chr4_1:21682983-21683002 Msa0540120:intron 30.0%
CTTAAGTCAGTAGAAGATTT+AGG + chr4_1:21683084-21683103 Msa0540120:intron 30.0%
CTAAAGAGCTCTACTATATA+AGG - chr4_1:21683164-21683183 None:intergenic 30.0%
CATATGATGATAATTCTCAG+AGG + chr4_1:21683267-21683286 Msa0540120:intron 30.0%
GTGTGTGTGATATGATATTA+TGG + chr4_1:21683299-21683318 Msa0540120:intron 30.0%
AAAGTCTAATAATGCCCATT+TGG - chr4_1:21683339-21683358 None:intergenic 30.0%
!! ATTCTAAAACCATAAACCAC+CGG - chr4_1:21683386-21683405 None:intergenic 30.0%
TAAACTTGGAAAGTCAATGA+AGG - chr4_1:21683626-21683645 None:intergenic 30.0%
CAGGTACTTTGTATTAAACT+TGG - chr4_1:21683640-21683659 None:intergenic 30.0%
!!! TTGTTATTTTGTAGGTTCGT+AGG + chr4_1:21683728-21683747 Msa0540120:intron 30.0%
!! ACCTGTTTTTCTCTTATTAG+TGG + chr4_1:21683989-21684008 Msa0540120:CDS 30.0%
!! CCTGTTTTTCTCTTATTAGT+GGG + chr4_1:21683990-21684009 Msa0540120:CDS 30.0%
ACTCTCCTTAACTATATTCT+TGG + chr4_1:21684530-21684549 Msa0540120:intron 30.0%
CATTGCCAAGAATATAGTTA+AGG - chr4_1:21684538-21684557 None:intergenic 30.0%
TAGGATGTACAGCAAATTAA+TGG + chr4_1:21684581-21684600 Msa0540120:intron 30.0%
ATTGAAAATGCCACAAAAGA+TGG - chr4_1:21684694-21684713 None:intergenic 30.0%
AGCTGAAAATTATTCTCTAG+GGG + chr4_1:21684935-21684954 Msa0540120:intron 30.0%
TTATGTTGGAAATTGTAGTC+AGG + chr4_1:21685044-21685063 Msa0540120:intron 30.0%
AAAAGATGCAAATACTGTCT+TGG + chr4_1:21685162-21685181 Msa0540120:CDS 30.0%
TAAGACTTCAAAAACCACTT+CGG + chr4_1:21685191-21685210 Msa0540120:CDS 30.0%
GTTTAGTTGAAGACATGTTG+TGG - chr4_1:21682101-21682120 None:intergenic 35.0%
! AGTAGCAGAGTTTTTATCAG+TGG - chr4_1:21682248-21682267 None:intergenic 35.0%
ACTGATAAAAACTCTGCTAC+TGG + chr4_1:21682247-21682266 Msa0540120:CDS 35.0%
CTGATAAAAACTCTGCTACT+GGG + chr4_1:21682248-21682267 Msa0540120:CDS 35.0%
GCAAAATCTTGAACAGTTTC+AGG - chr4_1:21682375-21682394 None:intergenic 35.0%
GATGGAACTTCAAGAAATTC+AGG + chr4_1:21682398-21682417 Msa0540120:CDS 35.0%
! TCGAACTCGTGTTATCATTT+TGG - chr4_1:21682577-21682596 None:intergenic 35.0%
ACAGACTTTACTTACCTTTC+GGG + chr4_1:21682620-21682639 Msa0540120:intron 35.0%
GGAAAAACTCCGAATTACTA+GGG + chr4_1:21682641-21682660 Msa0540120:intron 35.0%
! TGTTAACTCTCTAGTTCCTA+GGG - chr4_1:21682674-21682693 None:intergenic 35.0%
ATGATGTTTCACATGAGATC+TGG + chr4_1:21682770-21682789 Msa0540120:intron 35.0%
AGATCATTGGCATCTTATGT+GGG - chr4_1:21682965-21682984 None:intergenic 35.0%
TAGATCATTGGCATCTTATG+TGG - chr4_1:21682966-21682985 None:intergenic 35.0%
AAGATGCCAATGATCTAAAG+TGG + chr4_1:21682969-21682988 Msa0540120:intron 35.0%
AGTGGAATTTGAATGATGGT+TGG + chr4_1:21682987-21683006 Msa0540120:intron 35.0%
! GTAGAGCTCTTTAGAAGAAT+TGG + chr4_1:21683170-21683189 Msa0540120:intron 35.0%
! AGCTCTTTAGAAGAATTGGA+GGG + chr4_1:21683174-21683193 Msa0540120:intron 35.0%
! TCGATTTTTGCCTTGATAAG+CGG + chr4_1:21683225-21683244 Msa0540120:intron 35.0%
CATGAGAATCCAATCCAAAT+GGG + chr4_1:21683322-21683341 Msa0540120:intron 35.0%
CTAATAATGCCCATTTGGAT+TGG - chr4_1:21683334-21683353 None:intergenic 35.0%
ATTGTATTTAATCACACCGG+TGG + chr4_1:21683367-21683386 Msa0540120:intron 35.0%
! TTAAGATCACTGTTGCTTGT+AGG + chr4_1:21683433-21683452 Msa0540120:intron 35.0%
! GGAATGAATGATGGGAAATT+AGG - chr4_1:21683823-21683842 None:intergenic 35.0%
GCAAGAATGGAATGAATGAT+GGG - chr4_1:21683831-21683850 None:intergenic 35.0%
TACATGAAACTTACCAAAGG+AGG - chr4_1:21683853-21683872 None:intergenic 35.0%
! TGCTTTCAATTTGAAGTGCT+TGG + chr4_1:21683903-21683922 Msa0540120:intron 35.0%
! AATTTGAAGTGCTTGGCAAA+TGG + chr4_1:21683910-21683929 Msa0540120:intron 35.0%
CCCACTAATAAGAGAAAAAC+AGG - chr4_1:21683993-21684012 None:intergenic 35.0%
!! AGTGGGATAATACTTTTTGG+TGG + chr4_1:21684007-21684026 Msa0540120:CDS 35.0%
AGATCAGTGTTGTCAAATAG+CGG + chr4_1:21684218-21684237 Msa0540120:intron 35.0%
!! AACAAATCGGTGTCAAATAG+AGG + chr4_1:21684275-21684294 Msa0540120:intron 35.0%
GTGTCAAATAGAGGCTATAT+CGG + chr4_1:21684284-21684303 Msa0540120:intron 35.0%
GTGTTGTCAATCATGAATAG+TGG - chr4_1:21684346-21684365 None:intergenic 35.0%
GAATTGTTCAATGTTTGAGC+AGG + chr4_1:21684430-21684449 Msa0540120:intron 35.0%
!! TGGCCAATCCTTTTACTTTT+GGG + chr4_1:21684473-21684492 Msa0540120:intron 35.0%
!!! TAGTTAAGGAGAGTGCTTTT+AGG - chr4_1:21684524-21684543 None:intergenic 35.0%
! TTTGAGGTAGCATGATCAAA+AGG - chr4_1:21684638-21684657 None:intergenic 35.0%
!! GTACAATGTAGTGCTTTTTG+AGG - chr4_1:21684654-21684673 None:intergenic 35.0%
TACTTGTCTAATTTCTCAGC+TGG + chr4_1:21684731-21684750 Msa0540120:intron 35.0%
AGGTGACAATAATCAGGAAA+TGG - chr4_1:21684837-21684856 None:intergenic 35.0%
GTAAACAGGTGACAATAATC+AGG - chr4_1:21684843-21684862 None:intergenic 35.0%
TCTGCGAAGAATAAGTAAAC+AGG - chr4_1:21684857-21684876 None:intergenic 35.0%
TGTTTACTTATTCTTCGCAG+AGG + chr4_1:21684856-21684875 Msa0540120:intron 35.0%
TGGTGTAATCTCTGCATTAA+TGG + chr4_1:21685104-21685123 Msa0540120:CDS 35.0%
GGAATCAAATTTCTGAATGG+TGG + chr4_1:21685228-21685247 Msa0540120:CDS 35.0%
ATGTTGTGTTTGGGTGTAGT+TGG + chr4_1:21682070-21682089 Msa0540120:CDS 40.0%
CGCAGGTTCTGTATTATAGA+AGG + chr4_1:21682348-21682367 Msa0540120:intron 40.0%
AGGATAATATTCGGAGTCGA+AGG + chr4_1:21682418-21682437 Msa0540120:CDS 40.0%
GATAACACGAGTTCGATTCT+TGG + chr4_1:21682581-21682600 Msa0540120:intron 40.0%
! AATTCGGAGTTTTTCCCGAA+AGG - chr4_1:21682637-21682656 None:intergenic 40.0%
GGGAAAAACTCCGAATTACT+AGG + chr4_1:21682640-21682659 Msa0540120:intron 40.0%
! GTTAACTCTCTAGTTCCTAG+GGG - chr4_1:21682673-21682692 None:intergenic 40.0%
! GTGTTAACTCTCTAGTTCCT+AGG - chr4_1:21682675-21682694 None:intergenic 40.0%
GCTTGTATGTAGGAAGATGA+AGG + chr4_1:21682802-21682821 Msa0540120:intron 40.0%
!! GAAGATGATGGGATGATTAG+TGG + chr4_1:21682902-21682921 Msa0540120:intron 40.0%
CTTATGTGGGAAACTTTCCT+CGG - chr4_1:21682952-21682971 None:intergenic 40.0%
!! TGAATGATGGTTGGTGATGA+CGG + chr4_1:21682996-21683015 Msa0540120:intron 40.0%
TTAAGCATCAGAATGCTAGC+AGG - chr4_1:21683069-21683088 None:intergenic 40.0%
GTAGAAGATTTAGGTGAGTG+AGG + chr4_1:21683093-21683112 Msa0540120:intron 40.0%
! GAGCTCTTTAGAAGAATTGG+AGG + chr4_1:21683173-21683192 Msa0540120:intron 40.0%
TGATGATAATTCTCAGAGGG+AGG + chr4_1:21683271-21683290 Msa0540120:intron 40.0%
GCATGAGAATCCAATCCAAA+TGG + chr4_1:21683321-21683340 Msa0540120:intron 40.0%
TTAATCACACCGGTGGTTTA+TGG + chr4_1:21683374-21683393 Msa0540120:intron 40.0%
GGCAAGAATGGAATGAATGA+TGG - chr4_1:21683832-21683851 None:intergenic 40.0%
AACAGGTTGCATAATACTGC+CGG - chr4_1:21683976-21683995 None:intergenic 40.0%
TAAATCTTACACTCGGAGCA+AGG - chr4_1:21684036-21684055 None:intergenic 40.0%
! TGAATCCGACTCTTTTGTAC+TGG + chr4_1:21684086-21684105 Msa0540120:intron 40.0%
TTGCACCAGTACAAAAGAGT+CGG - chr4_1:21684094-21684113 None:intergenic 40.0%
! GTAGCGGAATTCGAACAAAT+CGG + chr4_1:21684262-21684281 Msa0540120:intron 40.0%
!! TGCTATAGCACTGATGAGTA+GGG + chr4_1:21684307-21684326 Msa0540120:intron 40.0%
AACACTAGAGAAGAGAGAGA+GGG + chr4_1:21684361-21684380 Msa0540120:intron 40.0%
! CTGGCCAATCCTTTTACTTT+TGG + chr4_1:21684472-21684491 Msa0540120:intron 40.0%
GCACCCAAAAGTAAAAGGAT+TGG - chr4_1:21684479-21684498 None:intergenic 40.0%
! TCTCTAGGGGCATATTCTAT+TGG + chr4_1:21684948-21684967 Msa0540120:intron 40.0%
!! TAGTCAGGTTGATCCTATTG+TGG + chr4_1:21685059-21685078 Msa0540120:intron 40.0%
TGCAAATACTGTCTTGGTAC+TGG + chr4_1:21685168-21685187 Msa0540120:CDS 40.0%
TAAAATGCAGATCTCCGAAG+TGG - chr4_1:21685208-21685227 None:intergenic 40.0%
! ACTTCGGAGATCTGCATTTT+AGG + chr4_1:21685207-21685226 Msa0540120:CDS 40.0%
! ATGGTGGAACTGAAGCATTA+TGG + chr4_1:21685244-21685263 Msa0540120:CDS 40.0%
TTGTGTTTGGGTGTAGTTGG+TGG + chr4_1:21682073-21682092 Msa0540120:CDS 45.0%
TGTGTTTGGGTGTAGTTGGT+GGG + chr4_1:21682074-21682093 Msa0540120:CDS 45.0%
ACACGAGTTCGATTCTTGGA+TGG + chr4_1:21682585-21682604 Msa0540120:intron 45.0%
GGGATGTGTCCCTAGTAATT+CGG - chr4_1:21682653-21682672 None:intergenic 45.0%
TGATGGGATGATTAGTGGCA+AGG + chr4_1:21682907-21682926 Msa0540120:intron 45.0%
GATGGGATGATTAGTGGCAA+GGG + chr4_1:21682908-21682927 Msa0540120:intron 45.0%
ATGATTAGTGGCAAGGGAAG+TGG + chr4_1:21682914-21682933 Msa0540120:intron 45.0%
!! TTGGTGATGACGGAACATAG+TGG + chr4_1:21683006-21683025 Msa0540120:intron 45.0%
AGACGACAATCCGCTTATCA+AGG - chr4_1:21683238-21683257 None:intergenic 45.0%
CATTCCATTCTTGCCTCCTT+TGG + chr4_1:21683837-21683856 Msa0540120:CDS 45.0%
CTTACCAAAGGAGGCAAGAA+TGG - chr4_1:21683844-21683863 None:intergenic 45.0%
AAAGAGTCGGATTCACATCG+AGG - chr4_1:21684081-21684100 None:intergenic 45.0%
!! GTGCTATAGCACTGATGAGT+AGG + chr4_1:21684306-21684325 Msa0540120:intron 45.0%
!! GCTATAGCACTGATGAGTAG+GGG + chr4_1:21684308-21684327 Msa0540120:intron 45.0%
CAACACTAGAGAAGAGAGAG+AGG + chr4_1:21684360-21684379 Msa0540120:intron 45.0%
CCAGCAACAGCAATAGCATA+GGG - chr4_1:21684456-21684475 None:intergenic 45.0%
GCAACGCACCCAAAAGTAAA+AGG - chr4_1:21684484-21684503 None:intergenic 45.0%
CTGGAGCTTAAGCTTGGAAT+AGG + chr4_1:21684750-21684769 Msa0540120:CDS 45.0%
GAGCTTAAGCTTGGAATAGG+TGG + chr4_1:21684753-21684772 Msa0540120:CDS 45.0%
TGGCGTCAGATTATCACTGT+TGG + chr4_1:21684968-21684987 Msa0540120:intron 45.0%
CCAGAGAATGATGCCACAAT+AGG - chr4_1:21685075-21685094 None:intergenic 45.0%
CCTATTGTGGCATCATTCTC+TGG + chr4_1:21685072-21685091 Msa0540120:CDS 45.0%
ATTGTGGCATCATTCTCTGG+TGG + chr4_1:21685075-21685094 Msa0540120:CDS 45.0%
CAATAAGAGGTGGCGTGTCA+TGG + chr4_1:21682165-21682184 Msa0540120:CDS 50.0%
TTACTAGGGACACATCCCCT+AGG + chr4_1:21682655-21682674 Msa0540120:intron 50.0%
AGTGGAAACTCCTTTGACCG+AGG + chr4_1:21682932-21682951 Msa0540120:intron 50.0%
GGGAAACTTTCCTCGGTCAA+AGG - chr4_1:21682945-21682964 None:intergenic 50.0%
!! GTGATGACGGAACATAGTGG+AGG + chr4_1:21683009-21683028 Msa0540120:intron 50.0%
! ATGACGGAACATAGTGGAGG+AGG + chr4_1:21683012-21683031 Msa0540120:intron 50.0%
! TGACGGAACATAGTGGAGGA+GGG + chr4_1:21683013-21683032 Msa0540120:intron 50.0%
AGGGTGACGATTGTTCTCCT+AGG + chr4_1:21683032-21683051 Msa0540120:intron 50.0%
GGGTGACGATTGTTCTCCTA+GGG + chr4_1:21683033-21683052 Msa0540120:intron 50.0%
GGTGACGATTGTTCTCCTAG+GGG + chr4_1:21683034-21683053 Msa0540120:intron 50.0%
GTGACGATTGTTCTCCTAGG+GGG + chr4_1:21683035-21683054 Msa0540120:intron 50.0%
TGATGTGTACCTTGCTCCTG+AGG + chr4_1:21683125-21683144 Msa0540120:intron 50.0%
GATGTGTACCTTGCTCCTGA+GGG + chr4_1:21683126-21683145 Msa0540120:intron 50.0%
GCGTCTTCTCACGTACTCAA+TGG - chr4_1:21683205-21683224 None:intergenic 50.0%
TGCAGACTTCAGCAAACCTC+CGG + chr4_1:21683954-21683973 Msa0540120:intron 50.0%
AGGTTGCATAATACTGCCGG+AGG - chr4_1:21683973-21683992 None:intergenic 50.0%
! CCCTATGCTATTGCTGTTGC+TGG + chr4_1:21684453-21684472 Msa0540120:intron 50.0%
GCCAGCAACAGCAATAGCAT+AGG - chr4_1:21684457-21684476 None:intergenic 50.0%
TCTCAGCTGGAGCTTAAGCT+TGG + chr4_1:21684744-21684763 Msa0540120:intron 50.0%
TGCATCTGCCTATGCAGTTG+AGG + chr4_1:21684805-21684824 Msa0540120:CDS 50.0%
TCATTCTCTGGTGGAGCTGT+TGG + chr4_1:21685084-21685103 Msa0540120:CDS 50.0%
CGATTGTTCTCCTAGGGGGA+TGG + chr4_1:21683039-21683058 Msa0540120:intron 55.0%
GGACGCTACCTCAACTGCAT+AGG - chr4_1:21684816-21684835 None:intergenic 55.0%
AGCAGGTACACCATCCCCCT+AGG - chr4_1:21683052-21683071 None:intergenic 60.0%
ACCTTGCTCCTGAGGGAGTG+AGG + chr4_1:21683133-21683152 Msa0540120:intron 60.0%
CCTTGCTCCTGAGGGAGTGA+GGG + chr4_1:21683134-21683153 Msa0540120:intron 60.0%
CCCTCACTCCCTCAGGAGCA+AGG - chr4_1:21683137-21683156 None:intergenic 65.0%
TGCTCCTGAGGGAGTGAGGG+AGG + chr4_1:21683137-21683156 Msa0540120:intron 65.0%
AGGACCTCCCTCACTCCCTC+AGG - chr4_1:21683144-21683163 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21682067 21685320 21682067 ID=Msa0540120;Name=Msa0540120
chr4_1 mRNA 21682067 21685320 21682067 ID=Msa0540120-mRNA-1;Parent=Msa0540120;Name=Msa0540120-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0.2|0|1|1|1|6|0|285
chr4_1 exon 21682067 21682269 21682067 ID=Msa0540120-mRNA-1:exon:6148;Parent=Msa0540120-mRNA-1
chr4_1 exon 21682353 21682467 21682353 ID=Msa0540120-mRNA-1:exon:6149;Parent=Msa0540120-mRNA-1
chr4_1 exon 21683742 21683858 21683742 ID=Msa0540120-mRNA-1:exon:6150;Parent=Msa0540120-mRNA-1
chr4_1 exon 21683959 21684045 21683959 ID=Msa0540120-mRNA-1:exon:6151;Parent=Msa0540120-mRNA-1
chr4_1 exon 21684750 21684826 21684750 ID=Msa0540120-mRNA-1:exon:6152;Parent=Msa0540120-mRNA-1
chr4_1 exon 21685062 21685320 21685062 ID=Msa0540120-mRNA-1:exon:6153;Parent=Msa0540120-mRNA-1
chr4_1 CDS 21682067 21682269 21682067 ID=Msa0540120-mRNA-1:cds;Parent=Msa0540120-mRNA-1
chr4_1 CDS 21682353 21682467 21682353 ID=Msa0540120-mRNA-1:cds;Parent=Msa0540120-mRNA-1
chr4_1 CDS 21683742 21683858 21683742 ID=Msa0540120-mRNA-1:cds;Parent=Msa0540120-mRNA-1
chr4_1 CDS 21683959 21684045 21683959 ID=Msa0540120-mRNA-1:cds;Parent=Msa0540120-mRNA-1
chr4_1 CDS 21684750 21684826 21684750 ID=Msa0540120-mRNA-1:cds;Parent=Msa0540120-mRNA-1
chr4_1 CDS 21685062 21685320 21685062 ID=Msa0540120-mRNA-1:cds;Parent=Msa0540120-mRNA-1
Gene Sequence

>Msa0540120

ATGATGTTGTGTTTGGGTGTAGTTGGTGGGTCCACAACATGTCTTCAACTAAACAACACCAAAAGATTCATTCATCTAAATAATAAGAAAAACAGTTTCAATAAGAGGTGGCGTGTCATGGCACTTGAATTTGAATCAGACTCTTCTTCTTTTGCATCTTCTATTGATTCTTCTGATACCACTGATAAAAACTCTGCTACTGGGTTCTGTATTATAGAAGGACCTGAAACTGTTCAAGATTTTGCTAAGATGGAACTTCAAGAAATTCAGGATAATATTCGGAGTCGAAGGAATAAGATTTTTTTACATATGGAAGAGGTTCGTAGGCTTAGAATACAGCAAAGAATTAAAAATGCTGAACTTGGAATTTTTAAAGAAGAGCAAGAGAATGAACTTCCTAATTTCCCATCATTCATTCCATTCTTGCCTCCTTTGACTTCAGCAAACCTCCGGCAGTATTATGCAACCTGTTTTTCTCTTATTAGTGGGATAATACTTTTTGGTGGTCTCCTTGCTCCGAGTCTGGAGCTTAAGCTTGGAATAGGTGGCACATCTTATGCAGATTTTATTCAAAATATGCATCTGCCTATGCAGTTGAGTCAGGTTGATCCTATTGTGGCATCATTCTCTGGTGGAGCTGTTGGTGTAATCTCTGCATTAATGGTTGTTGAGATAAACAATGTAAAACAACAGGAACAGAAAAGATGCAAATACTGTCTTGGTACTGGTAAGACTTCAAAAACCACTTCGGAGATCTGCATTTTAGGAATCAAATTTCTGAATGGTGGAACTGAAGCATTATGGCTTCTTTTTTCTTTTCCTTTCTTAATGCAAATTGTTACTGCTTTCAACTGTTGA

Protein sequence

>Msa0540120

MMLCLGVVGGSTTCLQLNNTKRFIHLNNKKNSFNKRWRVMALEFESDSSSFASSIDSSDTTDKNSATGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGIFKEEQENELPNFPSFIPFLPPLTSANLRQYYATCFSLISGIILFGGLLAPSLELKLGIGGTSYADFIQNMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGKTSKTTSEICILGIKFLNGGTEALWLLFSFPFLMQIVTAFNC*