AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226580 MtrunA17_Chr2g0332621 93.907 279 15 1 1 279 1 277 0.0 529
Msa0226580 MtrunA17_Chr5g0437771 34.274 248 158 5 30 275 35 279 2.46e-39 138
Msa0226580 MtrunA17_Chr3g0114231 36.538 208 118 4 78 275 71 274 2.06e-33 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226580 AT3G15690.2 48.746 279 126 6 1 278 1 263 2.98e-80 243
Msa0226580 AT1G52670.1 46.182 275 142 5 6 278 4 274 3.09e-72 223
Msa0226580 AT3G15690.1 45.312 256 123 6 1 255 1 240 1.13e-63 200
Msa0226580 AT3G15690.3 44.800 250 123 5 7 255 7 242 5.05e-62 196
Msa0226580 AT3G56130.1 35.841 226 126 5 63 274 58 278 2.64e-35 128
Msa0226580 AT3G56130.2 37.500 192 102 4 96 274 16 202 1.74e-33 121
Msa0226580 AT3G56130.3 38.983 177 97 3 104 274 20 191 2.47e-31 115
Msa0226580 AT3G56130.4 32.850 207 120 5 63 255 58 259 5.13e-25 101
Msa0226580 AT3G56130.5 30.366 191 114 5 63 239 58 243 3.15e-17 79.3

Find 82 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTAACATCATTAAAAT+TGG 0.116441 2_1:+77102687 None:intergenic
TTTATCCTTATCTTCCCTTT+TGG 0.207575 2_1:+77101257 None:intergenic
GTTGAGCTTTCACAACATTT+TGG 0.245452 2_1:-77105617 Msa0226580:CDS
GCGGGTGTATTTATACTTAC+AGG 0.253090 2_1:+77102229 None:intergenic
ATATTGAAGCTTCTTTATTC+CGG 0.272327 2_1:+77101419 None:intergenic
GAAACTGATCCATTTGGTTT+AGG 0.301102 2_1:+77102199 None:intergenic
TCTGAAGAGATTAAATCTTC+TGG 0.320860 2_1:-77102730 Msa0226580:CDS
TATTGAAGCTTCTTTATTCC+GGG 0.339110 2_1:+77101420 None:intergenic
CAGAAGATCTCGGACGATAA+AGG 0.350185 2_1:-77101992 Msa0226580:CDS
TCTGCTGATTGGTCATTAGA+TGG 0.359586 2_1:+77105515 None:intergenic
GCAATATTGCCGTCATTTCC+CGG 0.364958 2_1:-77101438 Msa0226580:CDS
TTGAGAACAAGTTATATATA+AGG 0.373191 2_1:-77101336 Msa0226580:three_prime_UTR
GATGATAAACAGCTGTTTCA+AGG 0.373445 2_1:-77102765 Msa0226580:intron
AATGATATATATCAGCTTGA+TGG 0.374079 2_1:-77102325 Msa0226580:intron
GTTGGGGACTTGGATTGCTT+TGG 0.378715 2_1:+77106845 None:intergenic
GTGACAGATCCAGTTGGTTA+TGG 0.384983 2_1:-77101474 Msa0226580:intron
CAACTGGTAAGTTGGGGACT+TGG 0.388451 2_1:+77106835 None:intergenic
TCTTTCTAGTCTGACGTGTC+CGG 0.391008 2_1:-77101614 Msa0226580:intron
CTTTCTAGTCTGACGTGTCC+GGG 0.391958 2_1:-77101613 Msa0226580:intron
GTGAGATGAAGCCATTGAAT+TGG 0.400250 2_1:+77106704 None:intergenic
AGAAGATCTCGGACGATAAA+GGG 0.403087 2_1:-77101991 Msa0226580:CDS
AATGTAGAAACTGATCCATT+TGG 0.403959 2_1:+77102193 None:intergenic
TAATCTCTCTTCCAATTCAA+TGG 0.404021 2_1:-77106715 Msa0226580:exon
AAACGTATCACAGGTAGCTT+AGG 0.415749 2_1:-77105686 Msa0226580:intron
TACATTGGATCTCTGCTGAT+TGG 0.416759 2_1:+77105504 None:intergenic
CTGCTGATTGGTCATTAGAT+GGG 0.417953 2_1:+77105516 None:intergenic
TTTAATACACAAACCTCAAC+TGG 0.428231 2_1:+77101736 None:intergenic
TTATGTGAGACGGCATCAAT+TGG 0.434687 2_1:-77102483 Msa0226580:CDS
TTAAGAGTGTTGAATACTGC+AGG 0.442291 2_1:+77101297 None:intergenic
GCACTAACATCATTAAAATT+GGG 0.455388 2_1:+77102688 None:intergenic
CTTACAGGAGCAGGAATTGA+AGG 0.477237 2_1:+77102244 None:intergenic
GTACTAGAAGTTGGATCAGT+AGG 0.483887 2_1:-77105595 Msa0226580:CDS
TCAACGAGAAAGAATGAGAA+TGG 0.488105 2_1:+77101223 None:intergenic
TTCTTTATTCCGGGAAATGA+CGG 0.488727 2_1:+77101429 None:intergenic
TGGTGGGCAGCTACCAGTTG+AGG 0.498148 2_1:-77101749 Msa0226580:intron
AAAGAGAGAATGAACGTTGA+CGG 0.501156 2_1:+77106804 None:intergenic
TTTGGTTTAGGTGCTTCTGC+GGG 0.511687 2_1:+77102211 None:intergenic
GCAGAAGCACCTAAACCAAA+TGG 0.516816 2_1:-77102208 Msa0226580:CDS
AGTGCATCACCATAACCAAC+TGG 0.518295 2_1:+77101465 None:intergenic
CCTTCTTCATTGTCTATCGA+GGG 0.519793 2_1:-77102142 Msa0226580:CDS
AAAGTATTGAACTTGCACTT+TGG 0.522702 2_1:-77105650 Msa0226580:CDS
GTCACTGCAGTACACTAGAT+TGG 0.524258 2_1:-77105570 Msa0226580:CDS
ATAGACAATGAAGAAGGTAC+TGG 0.526221 2_1:+77102148 None:intergenic
TGCTGATTGGTCATTAGATG+GGG 0.529817 2_1:+77105517 None:intergenic
TAGAATCTTGATGACCTCCC+CGG 0.535783 2_1:+77101595 None:intergenic
GATTAAAACTTTGACGATGG+TGG 0.536358 2_1:-77106870 Msa0226580:five_prime_UTR
ACCTTCTTCATTGTCTATCG+AGG 0.541849 2_1:-77102143 Msa0226580:CDS
GTATTTATACTTACAGGAGC+AGG 0.544888 2_1:+77102235 None:intergenic
ATTTGGTTTAGGTGCTTCTG+CGG 0.545135 2_1:+77102210 None:intergenic
ATTAAAACTTTGACGATGGT+GGG 0.545762 2_1:-77106869 Msa0226580:five_prime_UTR
AGTTTCTACATTGACAACAT+TGG 0.552501 2_1:-77102182 Msa0226580:CDS
AATTGTACCTCGTTACATGA+AGG 0.552736 2_1:+77101955 None:intergenic
AAAGAATGAGAATGGAGGGT+TGG 0.559129 2_1:+77101231 None:intergenic
CCCTCGATAGACAATGAAGA+AGG 0.562111 2_1:+77102142 None:intergenic
TGTTACATTGAACAGCTTGG+TGG 0.563421 2_1:-77101766 Msa0226580:CDS
AACGTATCACAGGTAGCTTA+GGG 0.563493 2_1:-77105685 Msa0226580:intron
TGCGATTAAAACTTTGACGA+TGG 0.567908 2_1:-77106873 Msa0226580:five_prime_UTR
CGAGAAAGAATGAGAATGGA+GGG 0.581044 2_1:+77101227 None:intergenic
GTTACATTGAACAGCTTGGT+GGG 0.584700 2_1:-77101765 Msa0226580:CDS
ATCAAGATTCTAAGAGAGGA+TGG 0.587641 2_1:-77101584 Msa0226580:CDS
ATTTCACCTGCATGTAGTGA+GGG 0.591715 2_1:-77102302 Msa0226580:CDS
TTGGCATCTTCAGAAGATCT+CGG 0.594306 2_1:-77102002 Msa0226580:CDS
AAAAGCTGCAGATGAAGGGT+TGG 0.594334 2_1:-77102110 Msa0226580:CDS
ATTTGTTACATTGAACAGCT+TGG 0.595450 2_1:-77101769 Msa0226580:CDS
ACGAGAAAGAATGAGAATGG+AGG 0.597759 2_1:+77101226 None:intergenic
GGTGATAATTCATTCTCCAA+CGG 0.599409 2_1:-77102089 Msa0226580:intron
TTTCTAGTCTGACGTGTCCG+GGG 0.599859 2_1:-77101612 Msa0226580:intron
TCAAATCCCTCACTACATGC+AGG 0.601554 2_1:+77102296 None:intergenic
GATTTCACCTGCATGTAGTG+AGG 0.604745 2_1:-77102303 Msa0226580:CDS
ACAGCTGTTTCAAGGTCAGA+AGG 0.607336 2_1:-77102757 Msa0226580:intron
TATTCAACACTCTTAAACTG+AGG 0.616680 2_1:-77101290 Msa0226580:three_prime_UTR
GGTCATCAAGATTCTAAGAG+AGG 0.618953 2_1:-77101588 Msa0226580:CDS
TAAGAGTGTTGAATACTGCA+GGG 0.627436 2_1:+77101298 None:intergenic
CTAGTCTGACGTGTCCGGGG+AGG 0.637170 2_1:-77101609 Msa0226580:intron
AGAAGGTACTGGTTTCGAGA+TGG 0.639561 2_1:+77102159 None:intergenic
GCTCACTAACTTATGTGAGA+CGG 0.640399 2_1:-77102493 Msa0226580:CDS
TGTACCTCGTTACATGAAGG+AGG 0.663501 2_1:+77101958 None:intergenic
GCTGTTTCAAGGTCAGAAGG+TGG 0.666496 2_1:-77102754 Msa0226580:CDS
TGCTCCTCCTTCATGTAACG+AGG 0.687207 2_1:-77101962 Msa0226580:intron
ACAGGAGCAGGAATTGAAGG+AGG 0.687530 2_1:+77102247 None:intergenic
GTGTTTGTGACAGATCCAGT+TGG 0.712286 2_1:-77101480 Msa0226580:intron
AAGATTCTAAGAGAGGATGG+CGG 0.764705 2_1:-77101581 Msa0226580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAGTGAAAAAATTTT+AGG - chr2_1:77102152-77102171 Msa0226580:CDS 10.0%
!!! AATTACCATATTTTTTATTT+TGG + chr2_1:77103027-77103046 None:intergenic 10.0%
!!! TATTATTATTTTTGGGTAAT+TGG - chr2_1:77101608-77101627 Msa0226580:CDS 15.0%
!! TTGTATAAAAAACAAAAAAC+AGG + chr2_1:77101884-77101903 None:intergenic 15.0%
!!! TTTTTTGTTTTTTATACAAG+AGG - chr2_1:77101885-77101904 Msa0226580:intron 15.0%
!! TGTTTATTTCATTACATAAT+GGG - chr2_1:77102210-77102229 Msa0226580:CDS 15.0%
!! ATATTATATGAGTACATATT+CGG - chr2_1:77102864-77102883 Msa0226580:intron 15.0%
!! AAAAAATATGGTAATTGTTT+AGG - chr2_1:77103031-77103050 Msa0226580:intron 15.0%
!!! AATTATGTAATTTTCTACAA+TGG + chr2_1:77103347-77103366 None:intergenic 15.0%
!! TCTAAAAAATAAAAATTGAC+CGG - chr2_1:77103503-77103522 Msa0226580:intron 15.0%
!!! AACATAAGCTTTATAAATAA+TGG + chr2_1:77103636-77103655 None:intergenic 15.0%
!! TTATTTATAAAGCTTATGTT+AGG - chr2_1:77103636-77103655 Msa0226580:intron 15.0%
!!! TTGTTTTCAATTAAATTTTC+CGG + chr2_1:77104699-77104718 None:intergenic 15.0%
!! TTTAAACAGATAAAAAATAG+AGG + chr2_1:77106569-77106588 None:intergenic 15.0%
!!! TTTTATCTGTTTAAACATAA+TGG - chr2_1:77106574-77106593 Msa0226580:intron 15.0%
!! TTGAGGTTAAAAAATATACT+AGG + chr2_1:77101476-77101495 None:intergenic 20.0%
!!! AAAACATTGATATTGTTTTG+AGG + chr2_1:77101493-77101512 None:intergenic 20.0%
!! TAAAGTATATTCTCACAAAA+AGG - chr2_1:77101769-77101788 Msa0226580:CDS 20.0%
!! AAAGTATATTCTCACAAAAA+GGG - chr2_1:77101770-77101789 Msa0226580:CDS 20.0%
!! TGAAAAGAAATTCAAATGAT+TGG - chr2_1:77101945-77101964 Msa0226580:intron 20.0%
!! GTGTTTATTTCATTACATAA+TGG - chr2_1:77102209-77102228 Msa0226580:CDS 20.0%
!!! TTAGAATGGTTTTTATTCTT+TGG - chr2_1:77102374-77102393 Msa0226580:intron 20.0%
!! AAAGAATAAAGAACTTACAT+TGG + chr2_1:77102627-77102646 None:intergenic 20.0%
!!! ATTTTTTTTTTGTCCTACTT+CGG - chr2_1:77102728-77102747 Msa0226580:CDS 20.0%
!! TATTATATGAGTACATATTC+GGG - chr2_1:77102865-77102884 Msa0226580:intron 20.0%
!! AGTAATATACTCATATACAT+TGG - chr2_1:77103087-77103106 Msa0226580:intron 20.0%
!!! AATAGACTTAACATTCATTT+TGG - chr2_1:77103196-77103215 Msa0226580:intron 20.0%
!! ATTGATATTAACTTTCTTCA+GGG + chr2_1:77103224-77103243 None:intergenic 20.0%
!! AATTGATATTAACTTTCTTC+AGG + chr2_1:77103225-77103244 None:intergenic 20.0%
!!! ATTGTTGTAACATTTTTAGA+AGG + chr2_1:77103283-77103302 None:intergenic 20.0%
!! TTGTGATCAATAAAAATTCA+GGG + chr2_1:77103683-77103702 None:intergenic 20.0%
!! CAAGTAAAAAAAATTAACGA+AGG - chr2_1:77103700-77103719 Msa0226580:intron 20.0%
!! ATAGAGATTAATGTGTATTT+AGG + chr2_1:77103929-77103948 None:intergenic 20.0%
!! GATAAAAAATAAGAAAGAGT+AGG - chr2_1:77104741-77104760 Msa0226580:intron 20.0%
!!! GTACAGATTTGTATTATTTT+GGG + chr2_1:77104825-77104844 None:intergenic 20.0%
!!! CAAAGAGATTTAAGTTATAT+AGG + chr2_1:77105586-77105605 None:intergenic 20.0%
!!! TTTTAGAGTAGATTATTGAA+AGG + chr2_1:77106081-77106100 None:intergenic 20.0%
!! GTAATAGTAACTATAGTAAA+TGG + chr2_1:77106445-77106464 None:intergenic 20.0%
!! TACTATAGTTACTATTACAA+TGG - chr2_1:77106447-77106466 Msa0226580:intron 20.0%
!! TTGAGAACAAGTTATATATA+AGG - chr2_1:77106777-77106796 Msa0226580:five_prime_UTR 20.0%
!! TATTTTACAACTGGTAAGTT+GGG + chr2_1:77101288-77101307 None:intergenic 25.0%
!!! TTATTTTACAACTGGTAAGT+TGG + chr2_1:77101289-77101308 None:intergenic 25.0%
! TAGGAATTGTAAAGAAAAGA+AGG + chr2_1:77101457-77101476 None:intergenic 25.0%
! AAAGAAATTCAAATGATTGG+TGG - chr2_1:77101948-77101967 Msa0226580:intron 25.0%
!! AAGCTAGTTTATATAAGCTT+GGG - chr2_1:77102118-77102137 Msa0226580:CDS 25.0%
! TTTGTTCTTAGAACTTAGAA+TGG - chr2_1:77102360-77102379 Msa0226580:intron 25.0%
!!! ACAAATAACCATCATTTTTG+GGG + chr2_1:77102401-77102420 None:intergenic 25.0%
!!! CACAAATAACCATCATTTTT+GGG + chr2_1:77102402-77102421 None:intergenic 25.0%
!! ACACAAATAACCATCATTTT+TGG + chr2_1:77102403-77102422 None:intergenic 25.0%
! GTAATTGAGTAATAGAACAA+TGG + chr2_1:77102664-77102683 None:intergenic 25.0%
!!! GATGGTAGAAATTTTTCAAT+AGG + chr2_1:77102693-77102712 None:intergenic 25.0%
! TATAGTGTAAGATATACTTC+TGG + chr2_1:77102840-77102859 None:intergenic 25.0%
! ATTATATGAGTACATATTCG+GGG - chr2_1:77102866-77102885 Msa0226580:intron 25.0%
! TGCTATGTTAGTATTATTGA+CGG + chr2_1:77102892-77102911 None:intergenic 25.0%
!!! TATTTTTTATTTTGGCACGA+GGG + chr2_1:77103019-77103038 None:intergenic 25.0%
!!! ATATTTTTTATTTTGGCACG+AGG + chr2_1:77103020-77103039 None:intergenic 25.0%
! TCGTGCCAAAATAAAAAATA+TGG - chr2_1:77103019-77103038 Msa0226580:intron 25.0%
! ATGGTAATTGTTTAGGAATT+TGG - chr2_1:77103038-77103057 Msa0226580:intron 25.0%
!! TTTTACGCAAGAAAATACAT+TGG - chr2_1:77103119-77103138 Msa0226580:intron 25.0%
!! TGTTTAAAATAATGATCTCC+AGG - chr2_1:77103166-77103185 Msa0226580:intron 25.0%
!! TTAAGTCTATTCTTTTTACC+TGG + chr2_1:77103187-77103206 None:intergenic 25.0%
! ATATCAACTTTCAATGATTG+AGG + chr2_1:77103312-77103331 None:intergenic 25.0%
!! ATGTAATTTTCTACAATGGA+GGG + chr2_1:77103343-77103362 None:intergenic 25.0%
!! TATGTAATTTTCTACAATGG+AGG + chr2_1:77103344-77103363 None:intergenic 25.0%
!!! AAGTCATTTTTCATGATTGA+GGG - chr2_1:77103406-77103425 Msa0226580:intron 25.0%
! TAGTAATGTAAATTACACTC+CGG + chr2_1:77103525-77103544 None:intergenic 25.0%
! TGTGATCAATAAAAATTCAG+GGG + chr2_1:77103682-77103701 None:intergenic 25.0%
! CTTGTGATCAATAAAAATTC+AGG + chr2_1:77103684-77103703 None:intergenic 25.0%
!!! TGTATTTAGGTTTTTACTGT+TGG + chr2_1:77103888-77103907 None:intergenic 25.0%
! TAAACGGTATTTGTGTATTT+AGG + chr2_1:77103901-77103920 None:intergenic 25.0%
!! GTGTATTTAGGTCTTTTAAA+CGG + chr2_1:77103917-77103936 None:intergenic 25.0%
! TATGAACATGAACAGATATT+TGG - chr2_1:77104099-77104118 Msa0226580:intron 25.0%
!!! GACAAAATCCTTTTTAGAAA+AGG - chr2_1:77104284-77104303 Msa0226580:intron 25.0%
!! GGTACAGATTTGTATTATTT+TGG + chr2_1:77104826-77104845 None:intergenic 25.0%
! AATTATCATGTATAGATAGG+AGG + chr2_1:77104872-77104891 None:intergenic 25.0%
! TCGAATTATCATGTATAGAT+AGG + chr2_1:77104875-77104894 None:intergenic 25.0%
!!! GCTAGGGAATTTTTAATTAA+CGG + chr2_1:77104906-77104925 None:intergenic 25.0%
!!! GTTTTGAAAATCAAACAATG+TGG + chr2_1:77105069-77105088 None:intergenic 25.0%
!!! AACTCTGTTAGTTTTTATCA+AGG - chr2_1:77105086-77105105 Msa0226580:intron 25.0%
! AATTTAACAGTTTCAGTTCT+CGG + chr2_1:77105237-77105256 None:intergenic 25.0%
! TAAAGCAATTGAAATTTGTG+TGG - chr2_1:77105263-77105282 Msa0226580:intron 25.0%
! GATATGTATATATCATAGTC+TGG - chr2_1:77105302-77105321 Msa0226580:intron 25.0%
! AGCTGTTTATCATCAAAAAA+AGG + chr2_1:77105342-77105361 None:intergenic 25.0%
! GCACTAACATCATTAAAATT+GGG + chr2_1:77105428-77105447 None:intergenic 25.0%
! TGCACTAACATCATTAAAAT+TGG + chr2_1:77105429-77105448 None:intergenic 25.0%
!!! TTTGTTTTATTGATGCTGAA+TGG + chr2_1:77105500-77105519 None:intergenic 25.0%
! TATAACTTAAATCTCTTTGC+AGG - chr2_1:77105587-77105606 Msa0226580:CDS 25.0%
! ATATATATCATTTGGAGGTT+GGG + chr2_1:77105780-77105799 None:intergenic 25.0%
! TCAAGCTGATATATATCATT+TGG + chr2_1:77105788-77105807 None:intergenic 25.0%
! AATGATATATATCAGCTTGA+TGG - chr2_1:77105788-77105807 Msa0226580:intron 25.0%
!! AACATAATGGCATTTTTATG+TGG - chr2_1:77106587-77106606 Msa0226580:intron 25.0%
! ATATTGAAGCTTCTTTATTC+CGG + chr2_1:77106697-77106716 None:intergenic 25.0%
!! AAGTTTTAATCGCATGCTAA+TGG + chr2_1:77101234-77101253 None:intergenic 30.0%
ATTAAAACTTTGACGATGGT+GGG - chr2_1:77101244-77101263 Msa0226580:three_prime_UTR 30.0%
! ATTTTACAACTGGTAAGTTG+GGG + chr2_1:77101287-77101306 None:intergenic 30.0%
TAATCTCTCTTCCAATTCAA+TGG - chr2_1:77101398-77101417 Msa0226580:exon 30.0%
AAAGAAGGAGAAGTAGAAAA+AGG + chr2_1:77101442-77101461 None:intergenic 30.0%
!!! TTATACAAGAGGCTGTTTTT+AGG - chr2_1:77101896-77101915 Msa0226580:intron 30.0%
TTTGGAGACTGCATAATTAA+GGG - chr2_1:77102020-77102039 Msa0226580:intron 30.0%
! TTTTACAACCAAACAAAACG+AGG - chr2_1:77102073-77102092 Msa0226580:intron 30.0%
TTTACAACCAAACAAAACGA+GGG - chr2_1:77102074-77102093 Msa0226580:intron 30.0%
! CAAGCTAGTTTATATAAGCT+TGG - chr2_1:77102117-77102136 Msa0226580:CDS 30.0%
GCAACCTTTGTAACATTTAT+AGG - chr2_1:77102252-77102271 Msa0226580:CDS 30.0%
GTTGCCTATAAATGTTACAA+AGG + chr2_1:77102259-77102278 None:intergenic 30.0%
ATAAAATGACTCTCAACGAT+AGG + chr2_1:77102293-77102312 None:intergenic 30.0%
GTATGTATTGTTCATGCAAA+TGG - chr2_1:77102324-77102343 Msa0226580:intron 30.0%
!! AAAGTATTGAACTTGCACTT+TGG - chr2_1:77102463-77102482 Msa0226580:intron 30.0%
!! AACATTTTGGTACTAGAAGT+TGG - chr2_1:77102509-77102528 Msa0226580:intron 30.0%
AATGCATGTGAAATCATTGA+TGG + chr2_1:77102711-77102730 None:intergenic 30.0%
TAGTGTATAGTGTAAACACT+CGG - chr2_1:77102811-77102830 Msa0226580:intron 30.0%
!!! ATTTTTTATTTTGGCACGAG+GGG + chr2_1:77103018-77103037 None:intergenic 30.0%
!! ACATTTTTAGAAGGCCAAAT+TGG + chr2_1:77103274-77103293 None:intergenic 30.0%
!!! GAAGTCATTTTTCATGATTG+AGG - chr2_1:77103405-77103424 Msa0226580:intron 30.0%
ATTGATGTCACCTATATCTT+TGG - chr2_1:77103459-77103478 Msa0226580:intron 30.0%
TTATTGTCCTCCAAAGATAT+AGG + chr2_1:77103472-77103491 None:intergenic 30.0%
! TATCTTTGGAGGACAATAAT+AGG - chr2_1:77103473-77103492 Msa0226580:intron 30.0%
TGAAAATTGCTTAGCTAAAC+TGG + chr2_1:77103754-77103773 None:intergenic 30.0%
!! CCTTTTATAAAGAGAAGCAT+GGG + chr2_1:77103798-77103817 None:intergenic 30.0%
! ACCTTTTATAAAGAGAAGCA+TGG + chr2_1:77103799-77103818 None:intergenic 30.0%
TGCTTCTCTTTATAAAAGGT+TGG - chr2_1:77103799-77103818 Msa0226580:intron 30.0%
!! GGTTGTTATTTCTGTTTAGT+TGG + chr2_1:77103854-77103873 None:intergenic 30.0%
! AAAGGTTTATTCTAGGAAGA+AGG + chr2_1:77103964-77103983 None:intergenic 30.0%
! TTTAAAATCAAACTGCTCAG+AGG + chr2_1:77104147-77104166 None:intergenic 30.0%
! AACACTAACCTACAAGTTTT+GGG + chr2_1:77104335-77104354 None:intergenic 30.0%
AGAAAACCAAGATCCAAATT+GGG + chr2_1:77104438-77104457 None:intergenic 30.0%
AAGAAAACCAAGATCCAAAT+TGG + chr2_1:77104439-77104458 None:intergenic 30.0%
TCAAACCAATTGTTAGAAAC+CGG - chr2_1:77104677-77104696 Msa0226580:intron 30.0%
! ATTTTCCGGTTTCTAACAAT+TGG + chr2_1:77104685-77104704 None:intergenic 30.0%
!! TATTTTGGGTGAATAGACAA+TGG + chr2_1:77104811-77104830 None:intergenic 30.0%
AATGAGTTAGAGAAAGGATA+TGG + chr2_1:77104847-77104866 None:intergenic 30.0%
GTTAGTTAGGATATAGGATA+AGG + chr2_1:77104937-77104956 None:intergenic 30.0%
TAAGGAGTTAGTTAGGATAT+AGG + chr2_1:77104943-77104962 None:intergenic 30.0%
! AGTTTTTATCAAGGTTCTGT+TGG - chr2_1:77105095-77105114 Msa0226580:intron 30.0%
!! TCTGTTGGTTTATGTCAATA+TGG - chr2_1:77105110-77105129 Msa0226580:intron 30.0%
!! CTGTTGGTTTATGTCAATAT+GGG - chr2_1:77105111-77105130 Msa0226580:intron 30.0%
TCTGAAGAGATTAAATCTTC+TGG - chr2_1:77105383-77105402 Msa0226580:intron 30.0%
CAATGAAGAAGAAACAACAA+AGG + chr2_1:77105750-77105769 None:intergenic 30.0%
GATATATATCATTTGGAGGT+TGG + chr2_1:77105781-77105800 None:intergenic 30.0%
AGCTGATATATATCATTTGG+AGG + chr2_1:77105785-77105804 None:intergenic 30.0%
AATGTAGAAACTGATCCATT+TGG + chr2_1:77105923-77105942 None:intergenic 30.0%
AGTTTCTACATTGACAACAT+TGG - chr2_1:77105931-77105950 Msa0226580:intron 30.0%
! ATTTGTTACATTGAACAGCT+TGG - chr2_1:77106344-77106363 Msa0226580:intron 30.0%
TTTAATACACAAACCTCAAC+TGG + chr2_1:77106380-77106399 None:intergenic 30.0%
TATTGAAGCTTCTTTATTCC+GGG + chr2_1:77106696-77106715 None:intergenic 30.0%
TATTCAACACTCTTAAACTG+AGG - chr2_1:77106823-77106842 Msa0226580:five_prime_UTR 30.0%
!!! TGAGGTTATTTTTTCCCAAA+AGG - chr2_1:77106841-77106860 Msa0226580:five_prime_UTR 30.0%
!!! GAGGTTATTTTTTCCCAAAA+GGG - chr2_1:77106842-77106861 Msa0226580:five_prime_UTR 30.0%
! TTATCCTTATCTTCCCTTTT+GGG + chr2_1:77106858-77106877 None:intergenic 30.0%
! TTTATCCTTATCTTCCCTTT+TGG + chr2_1:77106859-77106878 None:intergenic 30.0%
TGCGATTAAAACTTTGACGA+TGG - chr2_1:77101240-77101259 Msa0226580:three_prime_UTR 35.0%
GATTAAAACTTTGACGATGG+TGG - chr2_1:77101243-77101262 Msa0226580:three_prime_UTR 35.0%
!! GTTGACGGTTATTTTACAAC+TGG + chr2_1:77101297-77101316 None:intergenic 35.0%
AAAGAGAGAATGAACGTTGA+CGG + chr2_1:77101312-77101331 None:intergenic 35.0%
GTTTGGAGACTGCATAATTA+AGG - chr2_1:77102019-77102038 Msa0226580:intron 35.0%
GGTTTATCGTGTAAATGCTT+AGG - chr2_1:77102041-77102060 Msa0226580:intron 35.0%
TAAACACTTGTGTAAGTGCT+TGG + chr2_1:77102196-77102215 None:intergenic 35.0%
! TGTGTCATTAAACGTATCAC+AGG - chr2_1:77102418-77102437 Msa0226580:intron 35.0%
! GTTGAGCTTTCACAACATTT+TGG - chr2_1:77102496-77102515 Msa0226580:CDS 35.0%
!!! TTTTTTTGTCCTACTTCGGA+CGG - chr2_1:77102732-77102751 Msa0226580:CDS 35.0%
TGTTGATGTCATACTGTATG+TGG - chr2_1:77102784-77102803 Msa0226580:intron 35.0%
AGTGTATAGTGTAAACACTC+GGG - chr2_1:77102812-77102831 Msa0226580:intron 35.0%
CATTACATTAGCTAGCAAGA+GGG + chr2_1:77102943-77102962 None:intergenic 35.0%
CTCTTGCTAGCTAATGTAAT+GGG - chr2_1:77102942-77102961 Msa0226580:intron 35.0%
AACAAAACAGGCAACAAACA+AGG + chr2_1:77102990-77103009 None:intergenic 35.0%
!!! TTTTTTATTTTGGCACGAGG+GGG + chr2_1:77103017-77103036 None:intergenic 35.0%
TAAACCTGGACTTTCTTTGA+AGG - chr2_1:77103431-77103450 Msa0226580:intron 35.0%
AAAGCTTATGTTAGGATCTC+TGG - chr2_1:77103644-77103663 Msa0226580:intron 35.0%
CCCATGCTTCTCTTTATAAA+AGG - chr2_1:77103795-77103814 Msa0226580:intron 35.0%
! TTACTGTTGGATCTTTTTGC+AGG + chr2_1:77103875-77103894 None:intergenic 35.0%
!! AGGCTCTAAAGGTTTATTCT+AGG + chr2_1:77103971-77103990 None:intergenic 35.0%
GAAAATCAGTAAGTGTTTGC+TGG - chr2_1:77104013-77104032 Msa0226580:intron 35.0%
CCACAAGAACACATTTATCA+AGG + chr2_1:77104260-77104279 None:intergenic 35.0%
CCTTGATAAATGTGTTCTTG+TGG - chr2_1:77104257-77104276 Msa0226580:intron 35.0%
!! AGGCACAACCTTTTCTAAAA+AGG + chr2_1:77104295-77104314 None:intergenic 35.0%
! CAACACTAACCTACAAGTTT+TGG + chr2_1:77104336-77104355 None:intergenic 35.0%
ATGATCAGAACAATTGGAGA+GGG + chr2_1:77104398-77104417 None:intergenic 35.0%
ACAGACATGATCAGAACAAT+TGG + chr2_1:77104404-77104423 None:intergenic 35.0%
AATTGTTCTGATCATGTCTG+TGG - chr2_1:77104403-77104422 Msa0226580:intron 35.0%
GTGGAAAATGATTCCCAATT+TGG - chr2_1:77104422-77104441 Msa0226580:intron 35.0%
ATGATTCCCAATTTGGATCT+TGG - chr2_1:77104429-77104448 Msa0226580:intron 35.0%
TTACGTCCATAAGTTGCATT+GGG + chr2_1:77104513-77104532 None:intergenic 35.0%
ATTACGTCCATAAGTTGCAT+TGG + chr2_1:77104514-77104533 None:intergenic 35.0%
GAGGATAATGAGTTAGAGAA+AGG + chr2_1:77104853-77104872 None:intergenic 35.0%
AGTTAGGATATAGGATAAGG+AGG + chr2_1:77104934-77104953 None:intergenic 35.0%
CATAGGATAAGGAGTTAGTT+AGG + chr2_1:77104950-77104969 None:intergenic 35.0%
ATCTGTTAGGACATAGGATA+AGG + chr2_1:77104961-77104980 None:intergenic 35.0%
CTATGTCCTAACAGATTCAT+GGG - chr2_1:77104965-77104984 Msa0226580:intron 35.0%
TATGTCCTAACAGATTCATG+GGG - chr2_1:77104966-77104985 Msa0226580:intron 35.0%
GAAAATCAAACAATGTGGAC+TGG + chr2_1:77105064-77105083 None:intergenic 35.0%
TGTCAATATGGGATTCTATG+AGG - chr2_1:77105122-77105141 Msa0226580:intron 35.0%
CTCATATGTTCATGCATTCA+TGG - chr2_1:77105151-77105170 Msa0226580:intron 35.0%
! GATGATAAACAGCTGTTTCA+AGG - chr2_1:77105348-77105367 Msa0226580:intron 35.0%
AACTTAAATCTCTTTGCAGG+TGG - chr2_1:77105590-77105609 Msa0226580:CDS 35.0%
GTATTTATACTTACAGGAGC+AGG + chr2_1:77105881-77105900 None:intergenic 35.0%
! GAAACTGATCCATTTGGTTT+AGG + chr2_1:77105917-77105936 None:intergenic 35.0%
! ATAGACAATGAAGAAGGTAC+TGG + chr2_1:77105968-77105987 None:intergenic 35.0%
TAGAAAAAGCTGCAGATGAA+GGG - chr2_1:77105999-77106018 Msa0226580:intron 35.0%
GGTGATAATTCATTCTCCAA+CGG - chr2_1:77106024-77106043 Msa0226580:intron 35.0%
!!! TTGTTTTAGAGTCTTACCGT+TGG + chr2_1:77106043-77106062 None:intergenic 35.0%
AATTGTACCTCGTTACATGA+AGG + chr2_1:77106161-77106180 None:intergenic 35.0%
ATGTAACGAGGTACAATTGA+AGG - chr2_1:77106163-77106182 Msa0226580:intron 35.0%
GATTTCTCAACATACACATG+AGG + chr2_1:77106253-77106272 None:intergenic 35.0%
TTGACAGATGCAAAAAGTTG+AGG - chr2_1:77106310-77106329 Msa0226580:intron 35.0%
! ATCAAGATTCTAAGAGAGGA+TGG - chr2_1:77106529-77106548 Msa0226580:intron 35.0%
TTCTTTATTCCGGGAAATGA+CGG + chr2_1:77106687-77106706 None:intergenic 35.0%
!! TAAGAGTGTTGAATACTGCA+GGG + chr2_1:77106818-77106837 None:intergenic 35.0%
!! TTAAGAGTGTTGAATACTGC+AGG + chr2_1:77106819-77106838 None:intergenic 35.0%
! TTTTCCCAAAAGGGAAGATA+AGG - chr2_1:77106851-77106870 Msa0226580:five_prime_UTR 35.0%
GTGAGATGAAGCCATTGAAT+TGG + chr2_1:77101412-77101431 None:intergenic 40.0%
GCATCAACACTTCTGATTGA+TGG + chr2_1:77101734-77101753 None:intergenic 40.0%
AATCTCCAAACACAAACCCT+AGG - chr2_1:77101981-77102000 Msa0226580:CDS 40.0%
ATCTCCAAACACAAACCCTA+GGG - chr2_1:77101982-77102001 Msa0226580:CDS 40.0%
ACAAACCCTAGGGATCATTA+AGG - chr2_1:77101992-77102011 Msa0226580:CDS 40.0%
AACCAAACAAAACGAGGGAA+AGG - chr2_1:77102079-77102098 Msa0226580:intron 40.0%
!! AACCTTTCCCTCGTTTTGTT+TGG + chr2_1:77102084-77102103 None:intergenic 40.0%
TCTTTGGACCCCAAAAATGA+TGG - chr2_1:77102390-77102409 Msa0226580:intron 40.0%
AAACGTATCACAGGTAGCTT+AGG - chr2_1:77102427-77102446 Msa0226580:intron 40.0%
AACGTATCACAGGTAGCTTA+GGG - chr2_1:77102428-77102447 Msa0226580:intron 40.0%
GTACTAGAAGTTGGATCAGT+AGG - chr2_1:77102518-77102537 Msa0226580:intron 40.0%
! TGCTGATTGGTCATTAGATG+GGG + chr2_1:77102599-77102618 None:intergenic 40.0%
! CTGCTGATTGGTCATTAGAT+GGG + chr2_1:77102600-77102619 None:intergenic 40.0%
! TCTGCTGATTGGTCATTAGA+TGG + chr2_1:77102601-77102620 None:intergenic 40.0%
TACATTGGATCTCTGCTGAT+TGG + chr2_1:77102612-77102631 None:intergenic 40.0%
! GGACGGAAATGATGTGTTTT+AGG - chr2_1:77102749-77102768 Msa0226580:CDS 40.0%
CCATTACATTAGCTAGCAAG+AGG + chr2_1:77102944-77102963 None:intergenic 40.0%
CCTCTTGCTAGCTAATGTAA+TGG - chr2_1:77102941-77102960 Msa0226580:intron 40.0%
AATCCCTCAATCACAGAAAG+CGG - chr2_1:77103246-77103265 Msa0226580:intron 40.0%
TCCCACTTGTGATTCGTAAA+CGG - chr2_1:77103370-77103389 Msa0226580:intron 40.0%
TCCGTTTACGAATCACAAGT+GGG + chr2_1:77103374-77103393 None:intergenic 40.0%
TTCCGTTTACGAATCACAAG+TGG + chr2_1:77103375-77103394 None:intergenic 40.0%
TTGTCCTTCAAAGAAAGTCC+AGG + chr2_1:77103438-77103457 None:intergenic 40.0%
GATGTCACCTATATCTTTGG+AGG - chr2_1:77103462-77103481 Msa0226580:intron 40.0%
TGAATCTCTTCCTAGAGAGA+AGG + chr2_1:77103991-77104010 None:intergenic 40.0%
! CTCGACAATTGGTTCATCTT+CGG - chr2_1:77104066-77104085 Msa0226580:intron 40.0%
CACCAAGAATCTTTGTTCTC+GGG + chr2_1:77104230-77104249 None:intergenic 40.0%
CCACCAAGAATCTTTGTTCT+CGG + chr2_1:77104231-77104250 None:intergenic 40.0%
CATGATCAGAACAATTGGAG+AGG + chr2_1:77104399-77104418 None:intergenic 40.0%
GCTAAGGCTGAAAAGTTCTT+TGG + chr2_1:77104551-77104570 None:intergenic 40.0%
!! TAACAATTGGTTTGACCTGC+TGG + chr2_1:77104672-77104691 None:intergenic 40.0%
GTAGAATAGCAGATCCTTAG+AGG + chr2_1:77104781-77104800 None:intergenic 40.0%
CCATGAATCTGTTAGGACAT+AGG + chr2_1:77104967-77104986 None:intergenic 40.0%
CCTATGTCCTAACAGATTCA+TGG - chr2_1:77104964-77104983 Msa0226580:intron 40.0%
ATGTCCTAACAGATTCATGG+GGG - chr2_1:77104967-77104986 Msa0226580:intron 40.0%
TGCAAACTAGTGTATGCAGT+TGG + chr2_1:77105002-77105021 None:intergenic 40.0%
GCTCACTAACTTATGTGAGA+CGG - chr2_1:77105620-77105639 Msa0226580:CDS 40.0%
TTATGTGAGACGGCATCAAT+TGG - chr2_1:77105630-77105649 Msa0226580:CDS 40.0%
ATTTCACCTGCATGTAGTGA+GGG - chr2_1:77105811-77105830 Msa0226580:intron 40.0%
GCGGGTGTATTTATACTTAC+AGG + chr2_1:77105887-77105906 None:intergenic 40.0%
! ATTTGGTTTAGGTGCTTCTG+CGG + chr2_1:77105906-77105925 None:intergenic 40.0%
ACCTTCTTCATTGTCTATCG+AGG - chr2_1:77105970-77105989 Msa0226580:intron 40.0%
CCTTCTTCATTGTCTATCGA+GGG - chr2_1:77105971-77105990 Msa0226580:intron 40.0%
!! CTTCATCTGCAGCTTTTTCT+AGG + chr2_1:77106000-77106019 None:intergenic 40.0%
CTAGAAAAAGCTGCAGATGA+AGG - chr2_1:77105998-77106017 Msa0226580:intron 40.0%
!! ATCTACTCTAAAACCAGAGC+AGG - chr2_1:77106088-77106107 Msa0226580:intron 40.0%
TTGGCATCTTCAGAAGATCT+CGG - chr2_1:77106111-77106130 Msa0226580:intron 40.0%
AGAAGATCTCGGACGATAAA+GGG - chr2_1:77106122-77106141 Msa0226580:intron 40.0%
!! GGCCTTTCCTTCTCATTTTT+CGG - chr2_1:77106184-77106203 Msa0226580:intron 40.0%
!! GCCTTTCCTTCTCATTTTTC+GGG - chr2_1:77106185-77106204 Msa0226580:intron 40.0%
!!! TTTCCTTCTCATTTTTCGGG+CGG - chr2_1:77106188-77106207 Msa0226580:intron 40.0%
ACAGATGCAAAAAGTTGAGG+AGG - chr2_1:77106313-77106332 Msa0226580:intron 40.0%
CAGATGCAAAAAGTTGAGGA+GGG - chr2_1:77106314-77106333 Msa0226580:intron 40.0%
AGATGCAAAAAGTTGAGGAG+GGG - chr2_1:77106315-77106334 Msa0226580:intron 40.0%
TGTTACATTGAACAGCTTGG+TGG - chr2_1:77106347-77106366 Msa0226580:intron 40.0%
GTTACATTGAACAGCTTGGT+GGG - chr2_1:77106348-77106367 Msa0226580:intron 40.0%
GATGAGAATCTGAAAGAGCT+AGG + chr2_1:77106410-77106429 None:intergenic 40.0%
! GGTCATCAAGATTCTAAGAG+AGG - chr2_1:77106525-77106544 Msa0226580:intron 40.0%
! AAGATTCTAAGAGAGGATGG+CGG - chr2_1:77106532-77106551 Msa0226580:intron 40.0%
AAAGAATGAGAATGGAGGGT+TGG + chr2_1:77106885-77106904 None:intergenic 40.0%
! ATGCGGGAGCTTTAATGCAT+CGG + chr2_1:77101807-77101826 None:intergenic 45.0%
AAAATAGTGAGACCCCTTCC+CGG + chr2_1:77101839-77101858 None:intergenic 45.0%
TGATCCCTAGGGTTTGTGTT+TGG + chr2_1:77101989-77102008 None:intergenic 45.0%
AACCCTAGGGATCATTAAGG+AGG - chr2_1:77101995-77102014 Msa0226580:CDS 45.0%
CACCTCCTTAATGATCCCTA+GGG + chr2_1:77102000-77102019 None:intergenic 45.0%
ACACCTCCTTAATGATCCCT+AGG + chr2_1:77102001-77102020 None:intergenic 45.0%
!! GGGATCATTAAGGAGGTGTT+TGG - chr2_1:77102002-77102021 Msa0226580:CDS 45.0%
GTCACTGCAGTACACTAGAT+TGG - chr2_1:77102543-77102562 Msa0226580:intron 45.0%
ACATCATTTCCGTCCGAAGT+AGG + chr2_1:77102744-77102763 None:intergenic 45.0%
!! TAAGGCCAGGGGTTGATAAT+TGG + chr2_1:77102917-77102936 None:intergenic 45.0%
TAGCTAGCAAGAGGGATGTA+AGG + chr2_1:77102935-77102954 None:intergenic 45.0%
! TAATGGGCACAACCCTTCTA+AGG - chr2_1:77102958-77102977 Msa0226580:intron 45.0%
ACAAGGCTAGGTCCTTAGAA+GGG + chr2_1:77102973-77102992 None:intergenic 45.0%
AACAAGGCTAGGTCCTTAGA+AGG + chr2_1:77102974-77102993 None:intergenic 45.0%
AACAGGCAACAAACAAGGCT+AGG + chr2_1:77102985-77103004 None:intergenic 45.0%
CATGATTGAGGGACTAAACC+TGG - chr2_1:77103417-77103436 Msa0226580:intron 45.0%
AGCACTGTCTTCTTTCACAC+TGG - chr2_1:77103723-77103742 Msa0226580:intron 45.0%
!! ACCTTTAGAGCCTTCTCTCT+AGG - chr2_1:77103978-77103997 Msa0226580:intron 45.0%
! TCCTAGAGAGAAGGCTCTAA+AGG + chr2_1:77103982-77104001 None:intergenic 45.0%
ATCGAGGTTGTTATCGAGGT+CGG + chr2_1:77104046-77104065 None:intergenic 45.0%
ACAACCTCGATCTCGACAAT+TGG - chr2_1:77104055-77104074 Msa0226580:intron 45.0%
TGAACCAATTGTCGAGATCG+AGG + chr2_1:77104062-77104081 None:intergenic 45.0%
! ATGAGACTAGTCCAAGGGTT+TGG + chr2_1:77104192-77104211 None:intergenic 45.0%
TGTTCTCGGGCAAGAAAGTT+GGG + chr2_1:77104217-77104236 None:intergenic 45.0%
TTGTTCTCGGGCAAGAAAGT+TGG + chr2_1:77104218-77104237 None:intergenic 45.0%
TGCCCGAGAACAAAGATTCT+TGG - chr2_1:77104225-77104244 Msa0226580:intron 45.0%
CCGAGAACAAAGATTCTTGG+TGG - chr2_1:77104228-77104247 Msa0226580:intron 45.0%
TTTGGGTGAGTCGAACAAGT+TGG + chr2_1:77104318-77104337 None:intergenic 45.0%
TCGACTCACCCAAAACTTGT+AGG - chr2_1:77104324-77104343 Msa0226580:intron 45.0%
TTGTTACAGGGGATCGACAA+TGG + chr2_1:77104366-77104385 None:intergenic 45.0%
TGAACGCCCAATGCAACTTA+TGG - chr2_1:77104504-77104523 Msa0226580:intron 45.0%
CCTTAGCAATCCAACCAACA+GGG - chr2_1:77104564-77104583 Msa0226580:intron 45.0%
GGAGGACATGTGAGCTAAAA+GGG + chr2_1:77104618-77104637 None:intergenic 45.0%
AGAGATCTCTCTCTCCTCTA+AGG - chr2_1:77104764-77104783 Msa0226580:intron 45.0%
! ACAGCTGTTTCAAGGTCAGA+AGG - chr2_1:77105356-77105375 Msa0226580:intron 45.0%
GATTTCACCTGCATGTAGTG+AGG - chr2_1:77105810-77105829 Msa0226580:intron 45.0%
TCAAATCCCTCACTACATGC+AGG + chr2_1:77105820-77105839 None:intergenic 45.0%
CTTACAGGAGCAGGAATTGA+AGG + chr2_1:77105872-77105891 None:intergenic 45.0%
! TTTGGTTTAGGTGCTTCTGC+GGG + chr2_1:77105905-77105924 None:intergenic 45.0%
!! GCAGAAGCACCTAAACCAAA+TGG - chr2_1:77105905-77105924 Msa0226580:intron 45.0%
!! AGAAGGTACTGGTTTCGAGA+TGG + chr2_1:77105957-77105976 None:intergenic 45.0%
CCCTCGATAGACAATGAAGA+AGG + chr2_1:77105974-77105993 None:intergenic 45.0%
AAAAGCTGCAGATGAAGGGT+TGG - chr2_1:77106003-77106022 Msa0226580:intron 45.0%
!! ACTCTAAAACCAGAGCAGGT+TGG - chr2_1:77106092-77106111 Msa0226580:intron 45.0%
CAGAAGATCTCGGACGATAA+AGG - chr2_1:77106121-77106140 Msa0226580:intron 45.0%
TGTACCTCGTTACATGAAGG+AGG + chr2_1:77106158-77106177 None:intergenic 45.0%
GCCCGAAAAATGAGAAGGAA+AGG + chr2_1:77106189-77106208 None:intergenic 45.0%
! TCTTTCTAGTCTGACGTGTC+CGG - chr2_1:77106499-77106518 Msa0226580:intron 45.0%
! TAGAATCTTGATGACCTCCC+CGG + chr2_1:77106521-77106540 None:intergenic 45.0%
GTGTTTGTGACAGATCCAGT+TGG - chr2_1:77106633-77106652 Msa0226580:intron 45.0%
GTGACAGATCCAGTTGGTTA+TGG - chr2_1:77106639-77106658 Msa0226580:intron 45.0%
AGTGCATCACCATAACCAAC+TGG + chr2_1:77106651-77106670 None:intergenic 45.0%
GCAATATTGCCGTCATTTCC+CGG - chr2_1:77106675-77106694 Msa0226580:intron 45.0%
!!! TTGTTTTATATTATTATTTT+TGG - chr2_1:77101600-77101619 Msa0226580:CDS 5.0%
!!! TGTTTTATATTATTATTTTT+GGG - chr2_1:77101601-77101620 Msa0226580:CDS 5.0%
GTTGGGGACTTGGATTGCTT+TGG + chr2_1:77101271-77101290 None:intergenic 50.0%
! CAACTGGTAAGTTGGGGACT+TGG + chr2_1:77101281-77101300 None:intergenic 50.0%
ATTAAAGCTCCCGCATACGC+AGG - chr2_1:77101811-77101830 Msa0226580:intron 50.0%
! GGGAAGGGGTCTCACTATTT+TGG - chr2_1:77101838-77101857 Msa0226580:intron 50.0%
GCATGCCAATTATCAACCCC+TGG - chr2_1:77102909-77102928 Msa0226580:intron 50.0%
CGAGGGGGAAGAAACAAAAC+AGG + chr2_1:77103002-77103021 None:intergenic 50.0%
!! GTGCCGCTTTCTGTGATTGA+GGG + chr2_1:77103252-77103271 None:intergenic 50.0%
CACAGAAAGCGGCACCAATT+TGG - chr2_1:77103257-77103276 Msa0226580:intron 50.0%
CGAGATCGAGGTTGTTATCG+AGG + chr2_1:77104050-77104069 None:intergenic 50.0%
CTGCTCAGAGGAGACAATCA+TGG + chr2_1:77104135-77104154 None:intergenic 50.0%
!! CCAAGGGTTTGGTGTCAACA+AGG + chr2_1:77104181-77104200 None:intergenic 50.0%
CCTTGTTGACACCAAACCCT+TGG - chr2_1:77104178-77104197 Msa0226580:intron 50.0%
! GGGTGATGAGACTAGTCCAA+GGG + chr2_1:77104197-77104216 None:intergenic 50.0%
! TGGGTGATGAGACTAGTCCA+AGG + chr2_1:77104198-77104217 None:intergenic 50.0%
TACAGGGGATCGACAATGGA+GGG + chr2_1:77104362-77104381 None:intergenic 50.0%
TTACAGGGGATCGACAATGG+AGG + chr2_1:77104363-77104382 None:intergenic 50.0%
GGAAGCAGTGGTTGTTACAG+GGG + chr2_1:77104377-77104396 None:intergenic 50.0%
GGGAAGCAGTGGTTGTTACA+GGG + chr2_1:77104378-77104397 None:intergenic 50.0%
AGGGAAGCAGTGGTTGTTAC+AGG + chr2_1:77104379-77104398 None:intergenic 50.0%
ACAATTGGAGAGGGAAGCAG+TGG + chr2_1:77104389-77104408 None:intergenic 50.0%
GCCTTAGCAATCCAACCAAC+AGG - chr2_1:77104563-77104582 Msa0226580:intron 50.0%
! CCCTGTTGGTTGGATTGCTA+AGG + chr2_1:77104567-77104586 None:intergenic 50.0%
TAGCGCTGCCAGTACTTAAC+GGG + chr2_1:77104595-77104614 None:intergenic 50.0%
GTAGCGCTGCCAGTACTTAA+CGG + chr2_1:77104596-77104615 None:intergenic 50.0%
GGGAGGACATGTGAGCTAAA+AGG + chr2_1:77104619-77104638 None:intergenic 50.0%
TTTGACCTGCTGGATCTTCG+AGG + chr2_1:77104662-77104681 None:intergenic 50.0%
GGATAAGGAGGAGCTAGCTA+GGG + chr2_1:77104922-77104941 None:intergenic 50.0%
AGGATAAGGAGGAGCTAGCT+AGG + chr2_1:77104923-77104942 None:intergenic 50.0%
GAAGCCCCCATGAATCTGTT+AGG + chr2_1:77104974-77104993 None:intergenic 50.0%
! GCTGTTTCAAGGTCAGAAGG+TGG - chr2_1:77105359-77105378 Msa0226580:intron 50.0%
TCATTTGGAGGTTGGGCAGA+TGG + chr2_1:77105773-77105792 None:intergenic 50.0%
ACAGGAGCAGGAATTGAAGG+AGG + chr2_1:77105869-77105888 None:intergenic 50.0%
TGCTCCTCCTTCATGTAACG+AGG - chr2_1:77106151-77106170 Msa0226580:intron 50.0%
TGACCGCCCGAAAAATGAGA+AGG + chr2_1:77106194-77106213 None:intergenic 50.0%
! CTTTCTAGTCTGACGTGTCC+GGG - chr2_1:77106500-77106519 Msa0226580:intron 50.0%
! TTTCTAGTCTGACGTGTCCG+GGG - chr2_1:77106501-77106520 Msa0226580:intron 50.0%
! AAGAGAGGATGGCGGTTAGT+TGG - chr2_1:77106540-77106559 Msa0226580:intron 50.0%
! CGTGTCGATGTCACCTGTGT+TGG - chr2_1:77101696-77101715 Msa0226580:intron 55.0%
GCGTGTCTAGTGACCAACAC+AGG + chr2_1:77101712-77101731 None:intergenic 55.0%
CAAGAGGGATGTAAGGCCAG+GGG + chr2_1:77102928-77102947 None:intergenic 55.0%
GCAAGAGGGATGTAAGGCCA+GGG + chr2_1:77102929-77102948 None:intergenic 55.0%
AGCAAGAGGGATGTAAGGCC+AGG + chr2_1:77102930-77102949 None:intergenic 55.0%
!! GGTGCCGCTTTCTGTGATTG+AGG + chr2_1:77103253-77103272 None:intergenic 55.0%
! GGGTGAGTCGAACAAGTTGG+AGG + chr2_1:77104315-77104334 None:intergenic 55.0%
GCATTGGGCGTTCATGAGCA+CGG + chr2_1:77104498-77104517 None:intergenic 55.0%
CTGCCAGTACTTAACGGGAC+AGG + chr2_1:77104590-77104609 None:intergenic 55.0%
AGAGTCAGCAATGCCGGAGT+GGG + chr2_1:77104639-77104658 None:intergenic 55.0%
TCGAGGAGAGTCAGCAATGC+CGG + chr2_1:77104645-77104664 None:intergenic 55.0%
ACTCTCCTCGAAGATCCAGC+AGG - chr2_1:77104654-77104673 Msa0226580:intron 55.0%
CTGAAGATGCCAACCTGCTC+TGG + chr2_1:77106104-77106123 None:intergenic 55.0%
TTCCCGGAACCTGCGTATGC+GGG + chr2_1:77101823-77101842 None:intergenic 60.0%
CTTCCCGGAACCTGCGTATG+CGG + chr2_1:77101824-77101843 None:intergenic 60.0%
GCATACGCAGGTTCCGGGAA+GGG - chr2_1:77101823-77101842 Msa0226580:intron 60.0%
CATACGCAGGTTCCGGGAAG+GGG - chr2_1:77101824-77101843 Msa0226580:intron 60.0%
CTTAACGGGACAGGCCCTGT+TGG + chr2_1:77104581-77104600 None:intergenic 60.0%
GGGCCTGTCCCGTTAAGTAC+TGG - chr2_1:77104584-77104603 Msa0226580:intron 60.0%
GCTCACATGTCCTCCCACTC+CGG - chr2_1:77104623-77104642 Msa0226580:intron 60.0%
GAGAGTCAGCAATGCCGGAG+TGG + chr2_1:77104640-77104659 None:intergenic 60.0%
! TGGTGGGCAGCTACCAGTTG+AGG - chr2_1:77106364-77106383 Msa0226580:intron 60.0%
GCTCCCGCATACGCAGGTTC+CGG - chr2_1:77101817-77101836 Msa0226580:intron 65.0%
CTCCCGCATACGCAGGTTCC+GGG - chr2_1:77101818-77101837 Msa0226580:intron 65.0%
CGCATACGCAGGTTCCGGGA+AGG - chr2_1:77101822-77101841 Msa0226580:intron 65.0%
ACGGGACAGGCCCTGTTGGT+TGG + chr2_1:77104577-77104596 None:intergenic 65.0%
GTCAGCAATGCCGGAGTGGG+AGG + chr2_1:77104636-77104655 None:intergenic 65.0%
CTAGTCTGACGTGTCCGGGG+AGG - chr2_1:77106504-77106523 Msa0226580:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 77101230 77106905 77101230 ID=Msa0226580;Name=Msa0226580
chr2_1 mRNA 77101230 77106905 77101230 ID=Msa0226580-mRNA-1;Parent=Msa0226580;Name=Msa0226580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=187|1|1|1|0.75|0.88|9|186|279
chr2_1 exon 77101230 77101489 77101230 ID=Msa0226580-mRNA-1:exon:23402;Parent=Msa0226580-mRNA-1
chr2_1 exon 77101582 77101627 77101582 ID=Msa0226580-mRNA-1:exon:23401;Parent=Msa0226580-mRNA-1
chr2_1 exon 77101750 77101818 77101750 ID=Msa0226580-mRNA-1:exon:23400;Parent=Msa0226580-mRNA-1
chr2_1 exon 77101963 77102025 77101963 ID=Msa0226580-mRNA-1:exon:23399;Parent=Msa0226580-mRNA-1
chr2_1 exon 77102090 77102332 77102090 ID=Msa0226580-mRNA-1:exon:23398;Parent=Msa0226580-mRNA-1
chr2_1 exon 77102467 77102526 77102467 ID=Msa0226580-mRNA-1:exon:23397;Parent=Msa0226580-mRNA-1
chr2_1 exon 77102696 77102775 77102696 ID=Msa0226580-mRNA-1:exon:23396;Parent=Msa0226580-mRNA-1
chr2_1 exon 77105507 77105695 77105507 ID=Msa0226580-mRNA-1:exon:23395;Parent=Msa0226580-mRNA-1
chr2_1 exon 77106703 77106905 77106703 ID=Msa0226580-mRNA-1:exon:23394;Parent=Msa0226580-mRNA-1
chr2_1 five_prime_UTR 77106719 77106905 77106719 ID=Msa0226580-mRNA-1:five_prime_utr;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77106703 77106718 77106703 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77105507 77105695 77105507 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77102696 77102775 77102696 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77102467 77102526 77102467 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77102090 77102332 77102090 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77101963 77102025 77101963 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77101750 77101818 77101750 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77101582 77101627 77101582 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 CDS 77101416 77101489 77101416 ID=Msa0226580-mRNA-1:cds;Parent=Msa0226580-mRNA-1
chr2_1 three_prime_UTR 77101230 77101415 77101230 ID=Msa0226580-mRNA-1:three_prime_utr;Parent=Msa0226580-mRNA-1
Gene Sequence

>Msa0226580

ATGGCTTCATCTCACTGTAGCTTAGGGACACAAAATGTCAAAGTATTGAACTTGCACTTTGGTCAAGAAAGAGTTGAGCTTTCACAACATTTTGGTACTAGAAGTTGGATCAGTAGGAAGTCACTGCAGTACACTAGATTGGTTGCGTCAAGACAGACAGTTAGATCTTTAACCCCATCTAATGACCAATCAGCAGAGATCCAATCTGTTTCAAGGTCAGAAGGTGGTTCTGAAGAGATTAAATCTTCTGGTTTGACAAGTGAACTGTTTCCCAATTTTAATGATGTGGAATTCTTGCTCACTAACTTATGTGAGACGGCATCAATTGGAGAGCTAGAATTAAAACTTGATGGATTTCACCTGCATGTAGTGAGGGATTTGAGTTTGACTGAAAAATCTATAACACTTCCTCCTTCAATTCCTGCTCCTGTAAGTATAAATACACCCGCAGAAGCACCTAAACCAAATGGATCAGTTTCTACATTGACAACATTGGCCATCTCGAAACCAGTACCTTCTTCATTGTCTATCGAGGGATTCCTAGAAAAAGCTGCAGATGAAGGGTTGGTGATAATTCATTCTCCAACGGTTGGCATCTTCAGAAGATCTCGGACGATAAAGGGAAAACGTGCTCCTCCTTCATGTAACGAGATGCAAAAAGTTGAGGAGGGGAAAGTGATTTGTTACATTGAACAGCTTGGTGGGCAGCTACCAGTTGAGTCTGACGTGTCCGGGGAGGTCATCAAGATTCTAAGAGAGGATGGCGATCCAGTTGGTTATGGTGATGCACTTATAGCAATATTGCCGTCATTTCCCGGAATAAAGAAGCTTCAATATTGA

Protein sequence

>Msa0226580

MASSHCSLGTQNVKVLNLHFGQERVELSQHFGTRSWISRKSLQYTRLVASRQTVRSLTPSNDQSAEIQSVSRSEGGSEEIKSSGLTSELFPNFNDVEFLLTNLCETASIGELELKLDGFHLHVVRDLSLTEKSITLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPVPSSLSIEGFLEKAADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCNEMQKVEEGKVICYIEQLGGQLPVESDVSGEVIKILREDGDPVGYGDALIAILPSFPGIKKLQY*